> PLPR0505 ..AC:AJ312199.1 ..OS:Oryza sativa ..GENE:OsEPB-89 ..PROD:ethylene responsive protein ..[ -200: +51] ..CDS: +42 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.25 G - 0.24 T - 0.17 C - 0.34
1 atcaatttaa cctgcaacca acttttgcca caattttttt aaggagacga
51 attgacaacg aggcagccca cagacttcgg cgcccacaag atcgggagat
101 agcggcccac ggagactaca cagcccatcc ccacatcagc cagcgacggc
151 gacgccgacg acgacgactt ttcctctatt taccactccc gcgtcgcgcc
201 ATAGCGACGT CTCTCCCGGA GAAAGAAGAG CGCGCCGCGC CATGTGCGGC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00743 Mean Expected Number 0.000 -strand -13 : -24 GAGTGGTAAATa
AC RSP00915 Mean Expected Number 0.008 -strand -61 : -70 GCTGATGTGG
AC RSP00948 Mean Expected Number 0.009 -strand -17 : -23 GGTAAAT
Totally 3 motifs of 3 different REs have been found
Description of REs found
705. Group RE: box 3 /Group TF: GT-1 /AC: RSP00743//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 3 /TF: GT-1
846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2
877. Group TF: GT-2 /AC: RSP00948//OS: Oryza sativa /GENE: PHYA/RE: GT3-bx /TF: GT-2
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