> PLPR0509 ..AC:M76980.1 ..OS:Glycine max ..GENE: vspB ..PROD:vegetative storage protein ..[ -200: +51] ..CDS: +53 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.33 C - 0.10
1 ttgaggagta agactatgaa tatcaggaat agtttattta ataaaagaat
51 ttgtgtttga tttttaatct agtaaagtaa gagaaacttg tgatttctta
101 cacaggataa cacttttgat ttaattttga gataaaagtg atacgtgtag
151 atctaggaag agcgttgcct atttaaagaa gctaaccctc cacaaggaat
201 TAAGGTGCAA GAGTTTGTTG TGAGCTATAA GCTAGTTTAT CGTGAGGAGA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP01030 Mean Expected Number 0.009 +strand -119 : -112 AGAAACTT
AC RSP01274 Mean Expected Number 0.005 -strand -52 : -61 TaCACGTATC
AC RSP01288 Mean Expected Number 0.005 +strand -60 : -53 ATACGTGT
AC RSP01621 Mean Expected Number 0.005 +strand -92 : -83 aACACTTTTG
Totally 4 motifs of 4 different REs have been found
Description of REs found
955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22
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