> PLPR0511 ..AC:AF175275.1 ..OS:Pisum sativum ..GENE:CYP73A9 ..PROD:trans-cinnamic acid hydroxylase ..[ -200: +51] ..CDS: +21 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.47 G - 0.06 T - 0.24 C - 0.24
1 aattaaaatt aattttaaaa acataattaa tcattttaaa atagaatgta
51 aaatatttca tcttcattaa tcattataaa aagaaaagaa aaaagataca
101 tgaatgacaa gcaagacaca ccaaaaccac aaactcaacc taacccacct
151 aaccaaccaa aagctctcTA TAAAAAccca acaaccacta ccaacatttc
201 CATTACACCA CAACACAAAA ATGGATCTCC TTCTTCTCGA AAAGACCCTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00017 Mean Expected Number 0.005 +strand -59 : -21 AACCCA-- ** bp --AACCCA
AC RSP00681 Mean Expected Number 0.009 +strand -177 : -169 TAATTAATC
AC RSP01233 Mean Expected Number 0.009 +strand -91 : -85 AGCAAGA
AC RSP01470 Mean Expected Number 0.006 -strand -94 : -103 TCATtCATGT
Totally 4 motifs of 4 different REs have been found
Description of REs found
16. Group TF: SEF3 /AC: RSP00017//OS: Glycine max /GENE: beta-conglycinin/RE: SEF3-BE /TF: SEF3
650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown
1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown
1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)
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