> PLPR0518 ..AC:M99431.1 ..OS:Pharbitis nil ..GENE:Hsp83 ..PROD:heat shock protein 83 ..[ -200: +51] ..CDS: +112 ..TSS:201 (+1) # Alternative TSS(s): -6 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.29 C - 0.23
1 ataggtggat ccaatcaaac tttaaaaata acggcgtgga gaagaagtcg
51 agtgtctgga gggtagtaga atactccaga agcttgagaa atccaatatt
101 tttcgccttc aactttcctt cgCCAATaga aggacctaga atacactcgt
151 tttccctact cgcgTATATA AAcacaccac tcttcgtttc aattagagtc
201 ATCAGGACAA AAGCGGTTAT ACGTCGTTCT CGATCTCTCT GCGCTTTCTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00038 Mean Expected Number 0.001 -strand -25 : -36 TGTGtTTATATA
AC RSP01476 Mean Expected Number 0.010 -strand -175 : -182 TTTAAAGT
Totally 2 motifs of 2 different REs have been found
Description of REs found
37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs
1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown
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