> PLPR0518 ..AC:M99431.1 ..OS:Pharbitis nil ..GENE:Hsp83 ..PROD:heat shock protein 83 ..[ -200:  +51]  ..CDS: +112 ..TSS:201 (+1) # Alternative TSS(s): -6 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.29   G -  0.19   T -  0.29   C -  0.23

      1  ataggtggat ccaatcaaac tttaaaaata acggcgtgga gaagaagtcg
     51  agtgtctgga gggtagtaga atactccaga agcttgagaa atccaatatt
    101  tttcgccttc aactttcctt cgCCAATaga aggacctaga atacactcgt
    151  tttccctact cgcgTATATA AAcacaccac tcttcgtttc aattagagtc
    201  ATCAGGACAA AAGCGGTTAT ACGTCGTTCT CGATCTCTCT GCGCTTTCTT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00038   Mean Expected Number 0.001   -strand    -25 :  -36   TGTGtTTATATA
AC RSP01476   Mean Expected Number 0.010   -strand   -175 : -182   TTTAAAGT

  Totally       2 motifs of     2 different REs have been found


Description of REs found

   37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs
 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format