> PLPR0519 ..AC:AY227363.1 ..OS:Zea mays ..GENE:mads2 ..PROD:MADS-box transcription factor MADS2 ..[ -200:  +51]  ..CDS: +311 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.22   G -  0.24   T -  0.21   C -  0.33

      1  gccatttagg ggtaatgagc agcggccaat aaacaaagcc ctggggtagc
     51  caatcgggtg tcgccgtgcg cgcgcgcgcg cgtctggcct cctgccctcc
    101  tcctcccttt ccttgctaaa taaagcaagt agcagatagg ggaaagtctg
    151  ctcgcaagtt gcatccgccc tgcgccaaga aaagccatcg ttcttcccac
    201  AAACGCACAC ATAGAAGCAT CATTCCCCTC TCGGCTAGCT TCCTCCTCTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00260   Mean Expected Number 0.007   +strand   -196 : -190   TTTAGGG
AC RSP01071   Mean Expected Number 0.007   +strand     -1 :   +9   CAAACGcACA
AC RSP01209   Mean Expected Number 0.003   -strand    -17 :  -26   CTTTTCTTGG

  Totally       3 motifs of     3 different REs have been found


Description of REs found

  253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
  989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC:  RSP01153
 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs