> PLPR0520 ..AC:AB008810.1 ..OS:Arabidopsis thaliana ..GENE:erd5 ..PROD:proline dehydrogenase ..[ -200:  +51]  ..CDS: +123 ..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.16   T -  0.32   C -  0.16

      1  tctttacaaa gattccgttg taattttaga atttgttttt tgtcactgtt
     51  tttttataga ttaatttatc tgcatcaaac cgattaagaa gtgtacacat
    101  gggcatctat atatatctaa caggtaaaac gtgtatgtac atgcataagg
    151  ttttacgtgc ttcTATAAAT Atatgtggca gtaaccatag gagaaaaatc
    201  ACACAACCAA AGCGTTTAGA AAAAAACAGC GATAAAACCG AAACATCAAG
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00548   Mean Expected Number 0.001   +strand    -20 :  -10   GTAACCATaGG
AC RSP00559   Mean Expected Number 0.005   +strand   -182 : -172   TGTAATTTtAG
AC RSP00744   Mean Expected Number 0.001   +strand    -82 :  -71   AaCAGGTAAAAC
AC RSP00744   Mean Expected Number 0.000   -strand    -40 :  -51   AGCAcGTAAAAC
AC RSP01296   Mean Expected Number 0.008   +strand    -38 :  -30   CTATAAATA
AC RSP01470   Mean Expected Number 0.009   -strand    -53 :  -62   TtATGCATGT

  Totally       6 motifs of     5 different REs have been found


Description of REs found

  524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown
  535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown
  706. Group TF: GT-1 /AC: RSP00744//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 4 /TF: GT-1
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)