> PLPR0522 ..AC:AF264749.1 ..OS:Arabidopsis thaliana ..GENE:RCI2A ..PROD:hydrophobic protein RCI2A ..[ -200:  +51]  ..CDS:  +72 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.47   G -  0.16   T -  0.25   C -  0.12

      1  agattaagta cctatcttgc caaaaaaata tccctttcgc cttgtatgta
     51  gaaaaaagaa aagaaaaaca aagtcctcat ttagcttaaa ggtaaaggaa
    101  acaaataaaa taaaaagggt aagGCAATac gtggctcaaa aatatctaaa
    151  aagttggtct cTATATAATg tgagagatat atcacaagaa gaagatagag
    201  TAAAGAAGAT AAAAAACACA ATTTGAAGCT TTTATAATAT TTTCTCAGAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00043   Mean Expected Number 0.000   +strand    -73 :  -66   TACGTGGC
AC RSP00064   Mean Expected Number 0.001   +strand    -75 :  -66   AaTACGTGGC
AC RSP00566   Mean Expected Number 0.005   +strand   -161 : -152   CCTTGTATgT
AC RSP00819   Mean Expected Number 0.002   -strand    -66 :  -75   GCCACGTaTT
AC RSP00933   Mean Expected Number 0.001   +strand    +31 :  +43   TTTATAATaTTTT
AC RSP01007   Mean Expected Number 0.006   +strand   -191 : -185   ACCTATC
AC RSP01034   Mean Expected Number 0.002   +strand    -72 :  -66   ACGTGGC
AC RSP01039   Mean Expected Number 0.007   -strand   -163 : -168   GAAAGG

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
   63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown
  542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown
  765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF
  862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown
  932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
  963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family