> PLPR0524 ..AC:M99429.1 ..OS:Ipomoea nil ..GENE:shsp-1 ..PROD:small heat shock protein ..[ -200:  +51]  ..CDS:  +64 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.31   G -  0.14   T -  0.31   C -  0.24

      1  aactatagtc gatggaccat tttgggtatt tactctttta aaaaagttag
     51  ttagggtagt actagtacac tctagaattg tttagaaact gaactgggtc
    101  caagctagca ttttgaagat cccagaacct gccagaaact tatttccttt
    151  ctccagaaac ttcttcttcc tacataaatc ccaatctcct cagctctttc
    201  AATCACGTCA GCTAACATTC CAATTTCAAT TCGCGAAATA CCACAAAACA
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00862   Mean Expected Number 0.003   -strand    -49 :  -57   AGAAAGGAA
AC RSP00916   Mean Expected Number 0.005   -strand    +12 :   +3   GCTGACGTGA
AC RSP00917   Mean Expected Number 0.006   -strand    +12 :   +3   GcTGACGTGA
AC RSP00920   Mean Expected Number 0.001   +strand   -159 : -148   AAAAGTTAGTTA
AC RSP01030   Mean Expected Number 0.007   +strand    -67 :  -60   AGAAACTT
AC RSP01030   Mean Expected Number 0.007   +strand    -46 :  -39   AGAAACTT
AC RSP01214   Mean Expected Number 0.002   +strand   -184 : -175   CCATTTTGGG
AC RSP01577   Mean Expected Number 0.010   -strand   -115 : -124   tCTAAACAAT
AC SP017556   Mean Expected Number 0.001   -strand   -186 : -193   CCATCGAC

  Totally       9 motifs of     8 different REs have been found


Description of REs found

  798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1
  847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
  848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2
  850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3
  955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs
 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC:  RSP01578  RSP01579
 1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1