> PLPR0524 ..AC:M99429.1 ..OS:Ipomoea nil ..GENE:shsp-1 ..PROD:small heat shock protein ..[ -200: +51] ..CDS: +64 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.31 C - 0.24
1 aactatagtc gatggaccat tttgggtatt tactctttta aaaaagttag
51 ttagggtagt actagtacac tctagaattg tttagaaact gaactgggtc
101 caagctagca ttttgaagat cccagaacct gccagaaact tatttccttt
151 ctccagaaac ttcttcttcc tacataaatc ccaatctcct cagctctttc
201 AATCACGTCA GCTAACATTC CAATTTCAAT TCGCGAAATA CCACAAAACA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00862 Mean Expected Number 0.003 -strand -49 : -57 AGAAAGGAA
AC RSP00916 Mean Expected Number 0.005 -strand +12 : +3 GCTGACGTGA
AC RSP00917 Mean Expected Number 0.006 -strand +12 : +3 GcTGACGTGA
AC RSP00920 Mean Expected Number 0.001 +strand -159 : -148 AAAAGTTAGTTA
AC RSP01030 Mean Expected Number 0.007 +strand -67 : -60 AGAAACTT
AC RSP01030 Mean Expected Number 0.007 +strand -46 : -39 AGAAACTT
AC RSP01214 Mean Expected Number 0.002 +strand -184 : -175 CCATTTTGGG
AC RSP01577 Mean Expected Number 0.010 -strand -115 : -124 tCTAAACAAT
AC SP017556 Mean Expected Number 0.001 -strand -186 : -193 CCATCGAC
Totally 9 motifs of 8 different REs have been found
Description of REs found
798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1
847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2
850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3
955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs
1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579
1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1
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