> PLPR0528 ..AC:U20345.1 ..OS:Solanum tuberosum ..GENE:UGPase ..PROD:UDP-glucose pyrophosphorylase, UGPase-Lemhi10 allele ..[ -200: +51] ..CDS: +85 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.38 C - 0.23
1 gaactctgtc gaacatggca tgatagcgaa atattattct ttcctataat
51 atttttcgat atctcaacaa tataattcat aaaatcacct ttgttaaaga
101 acggttagcg ttaagtttca ttaggtgtca cctaatagaa gaatatttat
151 aggtgttaac tcttctggct ctttccctct cttcattcac acactatatc
201 TATCACTCTT CTCTCCATAC TCTCTGCTCC TCGAGAACTT TCTCTTCTCA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00428 Mean Expected Number 0.001 +strand -105 : -94 AAAgAACGGTTA
AC RSP00439 Mean Expected Number 0.006 -strand -55 : -62 ATATTCTT
AC RSP01296 Mean Expected Number 0.005 -strand -49 : -57 CTATAAATA
Totally 3 motifs of 3 different REs have been found
Description of REs found
409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919
419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
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