> PLPR0529 ..AC:L28831.1 ..OS:Glycine max ..GENE:rps11 ..PROD:ribosomal protein S11 ..[ -200:  +51]  ..CDS:  +85 ..TSS:201 (+1) # Alternative TSS(s): +3 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.34   G -  0.16   T -  0.31   C -  0.19

      1  ttaaaaaaaa aatacaaaat acgagtgtaa tttacttttt tttcatgatt
     51  taatttaaag gtaaaaaacc ttaacatcca gtgcgacatt acttacttat
    101  ccctagaagg cttattaagt tttgggctaa tctaattcct agcccacttt
    151  aaaaagccca gtagctgaaa tcttaacaaa aggagcgtct tccctcaact
    201  CCGAGCGAGA GAAGTTATTA GGGTTTTTGA GTGCGGCGGT CCAAACACTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00279   Mean Expected Number 0.001   +strand    +18 :  +26   TTAGGGTTT
AC RSP00296   Mean Expected Number 0.000   +strand    -78 :  -55   TGGGCT-- ** bp --AGCCCA
AC RSP00296   Mean Expected Number 0.000   -strand    -55 :  -78   TGGGCT-- ** bp --AGCCCA
AC RSP00369   Mean Expected Number 0.001   -strand    +26 :  +18   AAACCCTAA
AC RSP00874   Mean Expected Number 0.001   -strand    -47 :  -57   TTTTAAAGTGG
AC RSP01303   Mean Expected Number 0.002   -strand    +27 :  +18   aAAACCCTAA

  Totally       6 motifs of     5 different REs have been found


Description of REs found

  270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC:  RSP00448
  287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20
  354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
  810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3
 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown