> PLPR0530 ..AC:L28828.1 ..OS:Arabidopsis thaliana ..GENE:rps11 ..PROD:ribosomal protein S11 ..[ -200: +51] ..CDS: +81 ..TSS:201 (+1) # Alternative TSS(s): +2 +5 +6 +9 +10 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.31 C - 0.21
1 tattgttcca aaaacaaaaa gtaaaacaaa acacaccctt accaaaatta
51 tgtcaagtca aagcatcctc gttttaggga ttttctatac ttgggcctaa
101 atactaaggc ccgtaattaa aggcccaata acgtttgtgg tATTGTacaa
151 ttttcatgta gaaaatgtct TATATAAAga ggtcttgcaa attagggttt
201 TCATTTCAGT AATCGCTGCC GCACTATCGT CTCCTACCTC CTTTGCCTAC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00021 Mean Expected Number 0.003 +strand -185 : -174 AAAAAGTAAAAc
AC RSP00260 Mean Expected Number 0.009 +strand -128 : -122 TTTAGGG
AC RSP00279 Mean Expected Number 0.001 +strand -9 : -1 TTAGGGTTT
AC RSP00369 Mean Expected Number 0.001 -strand -1 : -9 AAACCCTAA
AC RSP01303 Mean Expected Number 0.002 -strand +1 : -9 aAAACCCTAA
Totally 5 motifs of 5 different REs have been found
Description of REs found
20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1
253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown
270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448
354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown
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