> PLPR0532 ..AC:AF099203.1 ..OS:Oryza sativa ..GENE:EP3A ..PROD:cysteine endopeptidase precursor ..[ -200:  +51]  ..CDS: +123 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.22   G -  0.14   T -  0.25   C -  0.39

      1  cgtatttgaa tctggccaga atcttcgacg ccattggcaa ctcacgtagc
     51  ccgccgctaa cgtagcagcc gtccatccca actccctagc tgaatctgac
    101  accatcgcac gcatctttct gttaccccca tttaaatccg tctcgtttcc
    151  cgccgcaaat cccagcTATA AATAcgtctc ctcccttctc cttcctcctc
    201  ATCGCCCTCA CCCTCCAATT CCAATCCCTC CCAAGAACTA GCTGATCACG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00179   Mean Expected Number 0.009   -strand    -65 :  -71   TTTAAAT
AC RSP00354   Mean Expected Number 0.001   +strand   -143 : -136   TAACGTAG
AC RSP00355   Mean Expected Number 0.003   -strand    -77 :  -84   TAACAGAA
AC RSP00695   Mean Expected Number 0.009   +strand    -34 :  -28   TATAAAT
AC RSP01004   Mean Expected Number 0.007   -strand    -64 :  -73   AtTTAAATGG
AC RSP01025   Mean Expected Number 0.009   +strand   -183 : -177   AGAATCT
AC RSP01031   Mean Expected Number 0.002   +strand   -183 : -176   AGAATCTT
AC RSP01296   Mean Expected Number 0.001   +strand    -35 :  -27   CTATAAATA
AC RSP01301   Mean Expected Number 0.009   +strand    -35 :  -26   CTATAAATAC

  Totally       9 motifs of     9 different REs have been found


Description of REs found

  173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
  339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown
  340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown
  661. Group RE: TATA box /AC: RSP00695//OS: Oryza sativa /GENE: Gt1/RE: TATA box /TF: unknown
  929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO
  950. Group RE: R2 /AC: RSP01025//OS: Arabidopsis thaliana /GENE: GapB/RE: R2 /TF: unknown
  956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302