> PLPR0533 ..AC:M81603.1 ..OS:Zea mays ..GENE:shrunken-2 ..PROD:ADP glucose pyrophosphorylase ..[ -200: +51] ..CDS: +525 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.31 C - 0.26
1 gcataaaaca aacagcttct agcctctttt acggtacttg cacttgcaag
51 aaatgtgaac tccttttcat ttctgtatgt ggacataatg ccaaagcatc
101 caggcttttt catggttgtt gatgtcttta cacagttcat ctccaccagt
151 atgccctcct catactcTAT ATAAAcacat caacagcatc gcaattagcc
201 ACAAGATCAC TTCGGGAGGC AAGTGTGATT TCGACCTTGC AGCCACCTTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00038 Mean Expected Number 0.002 -strand -22 : -33 TGTGtTTATATA
AC RSP00881 Mean Expected Number 0.004 -strand -78 : -87 ATCAACAACC
AC RSP01604 Mean Expected Number 0.005 -strand -65 : -72 ACTGTGTA
Totally 3 motifs of 3 different REs have been found
Description of REs found
37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs
817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family
1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1
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