> PLPR0534 ..AC:M76981.1 ..OS:Glycine max ..GENE:vspA ..PROD:vegetative storage protein ..[ -200: +51] ..CDS: +44 ..TSS:201 (+1) # Alternative TSS(s): -2 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.44 G - 0.18 T - 0.27 C - 0.12
1 aaaaaaatat gttcaaccaa attctattga agattaaaaa aaaagtagac
51 aaaaaacata aaagaaaata acattctgga ctagtaaaat gaattattgg
101 accgtaaaaa ttagcttatt acagttcaga aatattttat cctctatgca
151 gtaggcagag gtattgtcta tttaaagaag caaatcctcg atgaggaaag
201 TGCACAAGTG AGTTTGTTGA TCGAGATAAC TAGAAACAGT GTGATGAAAA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00097 Mean Expected Number 0.001 -strand -96 : -103 ACGGTCCA
AC RSP00881 Mean Expected Number 0.005 -strand +21 : +12 ATCAACAAaC
AC RSP01527 Mean Expected Number 0.001 -strand +20 : +9 TCAACAAACTCA
Totally 3 motifs of 3 different REs have been found
Description of REs found
95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown
817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family
1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown
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