> PLPR0536 ..AC:M97285.1 ..OS:Glycine max ..GENE:GmPM9 ..PROD:16 kDa seed maturation protein ..[ -200:  +51]  ..CDS:  +49 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.33   G -  0.24   T -  0.24   C -  0.20

      1  tgcacgagtg gttgattgcc acgtgtccct aacactgtgt tgaagctcgt
     51  tgcaaacaga cacgcggcaa ttacgtgtaa gacgattagt ccaataatcc
    101  tcagaaactt gccacgcgta ctgcactgac acgtgtgcaa aagatagcgc
    151  cgcacctaaa tctatttatt tggtagcatg cggtgtgctg ttgaaagaag
    201  AAAGAACCTA AGTGAGAAAC AAAGAAAGGA AATAATTGAT CTTTGAAAAT
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00002   Mean Expected Number 0.000   -strand   -175 : -183   ACACGTGGC
AC RSP00044   Mean Expected Number 0.001   -strand    -80 :  -90   GtACGCGTGGC
AC RSP00044   Mean Expected Number 0.001   -strand   -173 : -183   GGACaCGTGGC
AC RSP00049   Mean Expected Number 0.005   -strand    -64 :  -73   CaCACGTGTC
AC RSP00056   Mean Expected Number 0.003   +strand   -183 : -174   GCCACgTGTC
AC RSP00063   Mean Expected Number 0.003   -strand   -133 : -142   GCCGCGTGtC
AC RSP00073   Mean Expected Number 0.003   +strand   -183 : -174   GCCACGTGtC
AC RSP00073   Mean Expected Number 0.003   -strand   -174 : -183   GaCACGTGGC
AC RSP00143   Mean Expected Number 0.004   -strand   -133 : -142   GcCGCGTGTC
AC RSP00153   Mean Expected Number 0.003   +strand   -182 : -173   CCACGTGtCC
AC RSP00175   Mean Expected Number 0.002   -strand   -176 : -183   CACGTGGC
AC RSP00204   Mean Expected Number 0.002   -strand   -174 : -183   GACACGTGGC
AC RSP00219   Mean Expected Number 0.000   -strand   -173 : -184   gGACACGTGGCA
AC RSP00340   Mean Expected Number 0.003   +strand   -183 : -174   gCCACGTGTC
AC RSP00862   Mean Expected Number 0.004   +strand    +23 :  +31   AGAAAGGAA
AC RSP00936   Mean Expected Number 0.000   +strand   -184 : -173   TGCCACGTGTCc
AC RSP00961   Mean Expected Number 0.007   +strand    -65 :  -58   TGCAAAAG
AC RSP00985   Mean Expected Number 0.009   -strand    +13 :   +4   AcTTAGGTTC
AC RSP01030   Mean Expected Number 0.007   +strand    -98 :  -91   AGAAACTT
AC RSP01034   Mean Expected Number 0.008   -strand   -177 : -183   ACGTGGC
AC RSP01072   Mean Expected Number 0.007   +strand   -131 : -122   ATTACGTGTa
AC RSP01152   Mean Expected Number 0.003   -strand    -64 :  -73   CACACGTGTC
AC RSP01201   Mean Expected Number 0.003   +strand   -160 : -153   TGAAGCTC
AC RSP01255   Mean Expected Number 0.002   -strand   -175 : -182   ACACGTGG
AC RSP01256   Mean Expected Number 0.003   +strand    -72 :  -65   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand    -65 :  -72   ACACGTGT
AC RSP01261   Mean Expected Number 0.003   +strand   -130 : -123   TTACGTGT
AC RSP01600   Mean Expected Number 0.005   -strand    +48 :  +41   TTTCAAAG

  Totally      28 motifs of    25 different REs have been found


Description of REs found

    2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
   43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1
   48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown
   55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
   62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1
  865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF
  886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
  906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305)
  955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
  990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC:  RSP01154
 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1)
 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1
 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown

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