> PLPR0536 ..AC:M97285.1 ..OS:Glycine max ..GENE:GmPM9 ..PROD:16 kDa seed maturation protein ..[ -200: +51] ..CDS: +49 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.24 C - 0.20
1 tgcacgagtg gttgattgcc acgtgtccct aacactgtgt tgaagctcgt
51 tgcaaacaga cacgcggcaa ttacgtgtaa gacgattagt ccaataatcc
101 tcagaaactt gccacgcgta ctgcactgac acgtgtgcaa aagatagcgc
151 cgcacctaaa tctatttatt tggtagcatg cggtgtgctg ttgaaagaag
201 AAAGAACCTA AGTGAGAAAC AAAGAAAGGA AATAATTGAT CTTTGAAAAT
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00002 Mean Expected Number 0.000 -strand -175 : -183 ACACGTGGC
AC RSP00044 Mean Expected Number 0.001 -strand -80 : -90 GtACGCGTGGC
AC RSP00044 Mean Expected Number 0.001 -strand -173 : -183 GGACaCGTGGC
AC RSP00049 Mean Expected Number 0.005 -strand -64 : -73 CaCACGTGTC
AC RSP00056 Mean Expected Number 0.003 +strand -183 : -174 GCCACgTGTC
AC RSP00063 Mean Expected Number 0.003 -strand -133 : -142 GCCGCGTGtC
AC RSP00073 Mean Expected Number 0.003 +strand -183 : -174 GCCACGTGtC
AC RSP00073 Mean Expected Number 0.003 -strand -174 : -183 GaCACGTGGC
AC RSP00143 Mean Expected Number 0.004 -strand -133 : -142 GcCGCGTGTC
AC RSP00153 Mean Expected Number 0.003 +strand -182 : -173 CCACGTGtCC
AC RSP00175 Mean Expected Number 0.002 -strand -176 : -183 CACGTGGC
AC RSP00204 Mean Expected Number 0.002 -strand -174 : -183 GACACGTGGC
AC RSP00219 Mean Expected Number 0.000 -strand -173 : -184 gGACACGTGGCA
AC RSP00340 Mean Expected Number 0.003 +strand -183 : -174 gCCACGTGTC
AC RSP00862 Mean Expected Number 0.004 +strand +23 : +31 AGAAAGGAA
AC RSP00936 Mean Expected Number 0.000 +strand -184 : -173 TGCCACGTGTCc
AC RSP00961 Mean Expected Number 0.007 +strand -65 : -58 TGCAAAAG
AC RSP00985 Mean Expected Number 0.009 -strand +13 : +4 AcTTAGGTTC
AC RSP01030 Mean Expected Number 0.007 +strand -98 : -91 AGAAACTT
AC RSP01034 Mean Expected Number 0.008 -strand -177 : -183 ACGTGGC
AC RSP01072 Mean Expected Number 0.007 +strand -131 : -122 ATTACGTGTa
AC RSP01152 Mean Expected Number 0.003 -strand -64 : -73 CACACGTGTC
AC RSP01201 Mean Expected Number 0.003 +strand -160 : -153 TGAAGCTC
AC RSP01255 Mean Expected Number 0.002 -strand -175 : -182 ACACGTGG
AC RSP01256 Mean Expected Number 0.003 +strand -72 : -65 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -65 : -72 ACACGTGT
AC RSP01261 Mean Expected Number 0.003 +strand -130 : -123 TTACGTGT
AC RSP01600 Mean Expected Number 0.005 -strand +48 : +41 TTTCAAAG
Totally 28 motifs of 25 different REs have been found
Description of REs found
2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1
48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown
55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274
139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1
149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151
212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1
865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF
886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF
906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305)
955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154
1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1)
1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2
1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
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