> PLPR0538 ..AC:M86213.1 ..OS:Gossypium hirsutum ..GENE:Mat5-A ..PROD:2S albumin storage protein ..[ -200:  +51]  ..CDS:  +46 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.32   G -  0.12   T -  0.29   C -  0.27

      1  gagatattaa aattacatcg agaacctgaa tactaccgat cccagttaag
     51  gcagtttcat aaccaaccaa acaaatgtgt ccatttttgc atgcagaaat
    101  taacctacgt gttaggtttc aagtttcaac atcacacgta ttccccatgc
    151  aaaggttcaa ctctccTATA AATTaccttc acacctccac tccatttctc
    201  ACCCTTCTCA TCTGATTATT TTCTCCATAC CAGGATAAAT CAACAATGGC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00107   Mean Expected Number 0.007   -strand   -108 : -114   CATGCAA
AC RSP00301   Mean Expected Number 0.009   +strand    -53 :  -47   TGCAAAG
AC RSP00892   Mean Expected Number 0.003   -strand   -191 : -199   TTAATATCT
AC RSP01008   Mean Expected Number 0.003   -strand    -84 :  -90   ACCTAAC
AC RSP01078   Mean Expected Number 0.003   +strand   -142 : -131   ATAACCAaCCAA
AC RSP01260   Mean Expected Number 0.002   +strand    -96 :  -89   CTACGTGT
AC RSP01288   Mean Expected Number 0.006   -strand    -60 :  -67   ATACGTGT
AC RSP01702   Mean Expected Number 0.008   +strand    -68 :  -59   CACACGTATT

  Totally       8 motifs of     8 different REs have been found


Description of REs found

  105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown
  289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC:  RSP00882
  824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family
  933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC:  RSP01455
  996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1
 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1
 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown