> PLPR0539 ..AC:M85261.1 ..OS:Gossypium hirsutum ..GENE:Lea4-D9 ..PROD:putative desiccation protectant protein ..[ -200:  +51]  ..CDS:  +70 ..TSS:201 (+1) # Alternative TSS(s): +2 +5 +6 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.31   G -  0.13   T -  0.26   C -  0.30

      1  accctaaagt gtccctcaaa agtttaccat gcaatggact gaacaaaaat
     51  tactcgtgtc atcttattgg ctgacggtgt gcttacgtgg atcacaacct
    101  gtttccttaa tccaccacgt cgCCAATgct tatcattcat caccgatcaa
    151  ccccatgcac tccctcccaT ATATATAcaa gcatttcccg caatcggtac
    201  AATCATCACT ATCACAACTC ACAGCAATAT TATCACAAGC AGCAGCTAAA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00015   Mean Expected Number 0.004   +strand    -17 :  -10   TTTCCCGC
AC RSP00153   Mean Expected Number 0.004   +strand    -86 :  -77   CCACGTcGCC
AC RSP00247   Mean Expected Number 0.003   -strand   -110 : -119   tCCACGTAAG
AC RSP00395   Mean Expected Number 0.006   +strand   -118 : -109   TTACGTgGAT
AC RSP00566   Mean Expected Number 0.008   -strand    -19 :  -28   gCTTGTATAT
AC RSP00986   Mean Expected Number 0.003   +strand    -86 :  -79   CCACGTCG
AC RSP01267   Mean Expected Number 0.000   +strand   -123 : -106   TGTGCTTACGTGGATCAC
AC RSP01621   Mean Expected Number 0.005   -strand   -175 : -184   TAaACTTTTG
AC RSP01734   Mean Expected Number 0.004   -strand   -110 : -116   TCCACGT

  Totally       9 motifs of     9 different REs have been found


Description of REs found

   14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC:  RSP00165  RSP00298
  149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC:  RSP00154
  240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC:  RSP00738
  378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1
  542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown
  907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP
 1169. Group RE: Motif I /AC: RSP01267//OS: Gossypium hirsutum /GENE: D-19/RE: Motif I /TF: unknown
 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22
 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3