> PLPR0541 ..AC:M25268.1 ..OS:Arabidopsis thaliana ..GENE:dbp ..PROD:DNA-binding protein ..[ -200: +51] ..CDS: +52 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.26 C - 0.22
1 aggtgtgttt aatcacgtgt aacgcatcca atgcgtatga gagctttaca
51 gccgcacgat cacatgggta caaaaatcaa cggcgaagca aaacaagagt
101 ctcacactta ttaaagccac gtagcactcc accggtataa gctaacggag
151 gaTATAAAAA ctctttaact cattattgtc ctaaaatctc aattttatcc
201 ATTTTCACGG AAAAAACATA AAATCTGTTC TTCTTCTTCG GCTGAGAGAC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00043 Mean Expected Number 0.002 -strand -78 : -85 TACGTGGC
AC RSP00073 Mean Expected Number 0.002 +strand -85 : -76 GCCACGTaGC
AC RSP00073 Mean Expected Number 0.002 -strand -76 : -85 GCtACGTGGC
AC RSP00189 Mean Expected Number 0.003 +strand -85 : -76 gCCACGTAGC
AC RSP00524 Mean Expected Number 0.008 -strand -181 : -187 ACACGTG
AC RSP00756 Mean Expected Number 0.005 +strand -100 : -93 CTCACACT
AC RSP00817 Mean Expected Number 0.004 -strand -180 : -189 TACACGTGaT
AC RSP00978 Mean Expected Number 0.002 +strand -189 : -180 ATCACGTGTa
AC RSP01034 Mean Expected Number 0.007 -strand -79 : -85 ACGTGGC
AC RSP01259 Mean Expected Number 0.002 -strand -77 : -84 CTACGTGG
AC RSP01469 Mean Expected Number 0.006 +strand -141 : -132 TCACATGgGT
Totally 11 motifs of 10 different REs have been found
Description of REs found
42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274
183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown
763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
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