> PLPR0541 ..AC:M25268.1 ..OS:Arabidopsis thaliana ..GENE:dbp ..PROD:DNA-binding protein ..[ -200:  +51]  ..CDS:  +52 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.34   G -  0.17   T -  0.26   C -  0.22

      1  aggtgtgttt aatcacgtgt aacgcatcca atgcgtatga gagctttaca
     51  gccgcacgat cacatgggta caaaaatcaa cggcgaagca aaacaagagt
    101  ctcacactta ttaaagccac gtagcactcc accggtataa gctaacggag
    151  gaTATAAAAA ctctttaact cattattgtc ctaaaatctc aattttatcc
    201  ATTTTCACGG AAAAAACATA AAATCTGTTC TTCTTCTTCG GCTGAGAGAC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00043   Mean Expected Number 0.002   -strand    -78 :  -85   TACGTGGC
AC RSP00073   Mean Expected Number 0.002   +strand    -85 :  -76   GCCACGTaGC
AC RSP00073   Mean Expected Number 0.002   -strand    -76 :  -85   GCtACGTGGC
AC RSP00189   Mean Expected Number 0.003   +strand    -85 :  -76   gCCACGTAGC
AC RSP00524   Mean Expected Number 0.008   -strand   -181 : -187   ACACGTG
AC RSP00756   Mean Expected Number 0.005   +strand   -100 :  -93   CTCACACT
AC RSP00817   Mean Expected Number 0.004   -strand   -180 : -189   TACACGTGaT
AC RSP00978   Mean Expected Number 0.002   +strand   -189 : -180   ATCACGTGTa
AC RSP01034   Mean Expected Number 0.007   -strand    -79 :  -85   ACGTGGC
AC RSP01259   Mean Expected Number 0.002   -strand    -77 :  -84   CTACGTGG
AC RSP01469   Mean Expected Number 0.006   +strand   -141 : -132   TCACATGgGT

  Totally      11 motifs of    10 different REs have been found


Description of REs found

   42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
   72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC:  RSP00274
  183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown
  763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
  900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1
 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)

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