> PLPR0542 ..AC:M81130.1 ..OS:Arabidopsis thaliana ..GENE:carboxypeptidase Y-like protein ..PROD:carboxypeptidase Y-like protein ..[ -200:  +51]  ..CDS:  +32 ..TSS:201 (+1) # Alternative TSS(s): +2 +3 +4 +5 +6 +7 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.32   G -  0.16   T -  0.27   C -  0.25

      1  ctcgcgtgcc taaccgtcga ttactacgcc aaacgttatc tttgttgtaa
     51  cgtaacagat tcacccacta tttctcatat ttcgcaaaat agccccaact
    101  ttctcgggca cgtatcggaa gatatttctg tgatagttcc tgccacgtgt
    151  acattctctc ctcccccaaa ttgttgtata caacaatctc agaaaaggaa
    201  AAAAAAAGAA GCACAGTTGA AAGAACCAAA AATGGAGAAA CTAACTTTTC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00002   Mean Expected Number 0.000   -strand    -51 :  -59   ACACGTGGC
AC RSP00175   Mean Expected Number 0.001   -strand    -52 :  -59   CACGTGGC
AC RSP00204   Mean Expected Number 0.002   -strand    -50 :  -59   tACACGTGGC
AC RSP00254   Mean Expected Number 0.010   -strand     -3 :   -9   CCTTTTC
AC RSP00431   Mean Expected Number 0.003   -strand   -180 : -191   ATCGACGGTTAG
AC RSP00524   Mean Expected Number 0.009   -strand    -51 :  -57   ACACGTG
AC RSP00680   Mean Expected Number 0.009   +strand   -148 : -139   TAACAGAtTC
AC RSP00682   Mean Expected Number 0.002   +strand    -59 :  -50   GCCACGTGtA
AC RSP00783   Mean Expected Number 0.000   -strand    -50 :  -59   TACACGTGGC
AC RSP00920   Mean Expected Number 0.001   -strand    +49 :  +38   AAAAGTTAGTTt
AC RSP01013   Mean Expected Number 0.005   +strand    +29 :  +38   aAAATGGAGA
AC RSP01033   Mean Expected Number 0.007   -strand    +35 :  +26   CCATTTTTGG
AC RSP01034   Mean Expected Number 0.008   -strand    -53 :  -59   ACGTGGC
AC RSP01255   Mean Expected Number 0.002   -strand    -51 :  -58   ACACGTGG
AC RSP01593   Mean Expected Number 0.000   -strand    -50 :  -61   TACACGTGGCAG

  Totally      15 motifs of    15 different REs have been found


Description of REs found

    2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown
  169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC:  RSP00723  RSP01570
  197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC:  RSP01151
  247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC:  RSP00676
  411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown
  651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
  738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF
  850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3
  938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF
  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF