> PLPR0543 ..AC:NC_003074 ..OS:Arabidopsis thaliana ..GENE:ARR5 ..PROD:two-component responsive regulator ..[ -200: +51] ..CDS: +69 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.33 C - 0.26
1 tgaagtttag ccaaaatttg aaaatatgac ttttgagaag aaaacagaat
51 aaacaaataa ttagccacgc gctatcagac agacaaaatc ccacagatat
101 gcaaagatct ctcagaatcc tctccccata tcatattttt ctcttttccc
151 tctccttctt tcttccttTA TAAATCcatt tattctcctc tcatctctca
201 GCAAAATCAA ATCCTCATAG TTGATTCTCT CTATCTCTCT CACGAGTCAC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00301 Mean Expected Number 0.006 +strand -101 : -95 TGCAAAG
AC RSP00574 Mean Expected Number 0.006 +strand -156 : -149 CAGAATAA
AC RSP00709 Mean Expected Number 0.008 -strand -138 : -146 TAATTATTT
AC RSP01326 Mean Expected Number 0.008 -strand -163 : -169 TCTCAAA
AC RSP01283 Mean Expected Number 0.000 -strand +41 : +25 GAGAGAGAtAGAGAGAA
AC RSP01599 Mean Expected Number 0.008 -strand -178 : -185 TTTCAAAT
Totally 6 motifs of 6 different REs have been found
Description of REs found
289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown
1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC: RSP01326
1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown
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