> PLPR0548 ..AC:AJ536577.1 ..OS:Lycopersicon esculentum ..GENE:rnale ..PROD:ribonuclease T2 ..[ -200:  +51]  ..CDS:  +38 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.44   G -  0.05   T -  0.33   C -  0.18

      1  atactttaga atataccaaa atcaataatt ggcatcttat caattgtgtc
     51  aacatcaaaa acactaataa taaaggatac aaaatccaaa tcatattatt
    101  atatcaagct ccTCAATttc acactttaaa aagttagact tttcacatct
    151  ttcatttatt atttttttcc TATAAATAaa acccccaaaa tcactttatc
    201  AAATCACTAC CAATACAAAA AAAAATAATT TTTTTTACAA GAAAAAAATG
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00843   Mean Expected Number 0.006   -strand   -168 : -173   GCCAAT
AC RSP00933   Mean Expected Number 0.008   +strand    -46 :  -34   TTTATtATTTTTT
AC RSP01015   Mean Expected Number 0.007   -strand    -43 :  -52   tAAATGAAAG
AC RSP01060   Mean Expected Number 0.005   +strand   -178 : -170   CAATAATTG
AC RSP01060   Mean Expected Number 0.005   -strand   -170 : -178   CAATTATTG
AC RSP01077   Mean Expected Number 0.003   +strand   -178 : -170   CAATAATTG

  Totally       6 motifs of     5 different REs have been found


Description of REs found

  788. Group RE: CAT /AC: RSP00843//OS: Zea mays /GENE: H3C4/RE: CAT /TF: Uunknown TF
  862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown
  940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
  980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4
  995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short)

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