> PLPR0548 ..AC:AJ536577.1 ..OS:Lycopersicon esculentum ..GENE:rnale ..PROD:ribonuclease T2 ..[ -200: +51] ..CDS: +38 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.44 G - 0.05 T - 0.33 C - 0.18
1 atactttaga atataccaaa atcaataatt ggcatcttat caattgtgtc
51 aacatcaaaa acactaataa taaaggatac aaaatccaaa tcatattatt
101 atatcaagct ccTCAATttc acactttaaa aagttagact tttcacatct
151 ttcatttatt atttttttcc TATAAATAaa acccccaaaa tcactttatc
201 AAATCACTAC CAATACAAAA AAAAATAATT TTTTTTACAA GAAAAAAATG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00843 Mean Expected Number 0.006 -strand -168 : -173 GCCAAT
AC RSP00933 Mean Expected Number 0.008 +strand -46 : -34 TTTATtATTTTTT
AC RSP01015 Mean Expected Number 0.007 -strand -43 : -52 tAAATGAAAG
AC RSP01060 Mean Expected Number 0.005 +strand -178 : -170 CAATAATTG
AC RSP01060 Mean Expected Number 0.005 -strand -170 : -178 CAATTATTG
AC RSP01077 Mean Expected Number 0.003 +strand -178 : -170 CAATAATTG
Totally 6 motifs of 5 different REs have been found
Description of REs found
788. Group RE: CAT /AC: RSP00843//OS: Zea mays /GENE: H3C4/RE: CAT /TF: Uunknown TF
862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown
940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4
995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short)
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