> PLPR0549 ..AC:NC_003075 ..OS:Arabidopsis thaliana ..GENE:SQS1 ..PROD:farnesyl-diphosphate farnesyltransferase 1 (=squalene synthase 1) ..[ -200:  +51]  ..CDS: +130 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.35   G -  0.18   T -  0.30   C -  0.16

      1  catttgatga tattctttaa gtttcgtggc tctttttcaa tttcattggc
     51  tctgacattt tgtttttaat taaaaaggaa gaaacaaaca aaatgtgaat
    101  ccttgtgagt tggctcactg gcaaaaaaga aagaaaaaaa attcagaagc
    151  ctttgttttc atcgatgaat aaattaacaa acaaaactaa aaaataggat
    201  ATTCGCTGGC CGAATCGCGT CGATCCACAT CGCAGGTGAG GGTTCCTGCA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00357   Mean Expected Number 0.003   -strand    -89 :  -96   CAACTCAC
AC RSP00444   Mean Expected Number 0.000   +strand    -78 :  -65   AAaAAAGAAAGAAA
AC RSP00860   Mean Expected Number 0.005   +strand    -73 :  -65   AGAAAGAAA
AC RSP01437   Mean Expected Number 0.004   +strand     -8 :   +1   AATAGGATA

  Totally       4 motifs of     4 different REs have been found


Description of REs found

  342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown
  424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1
  796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1
 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA