> PLPR0551 ..AC:NC_003076 ..OS:Arabidopsis thaliana ..GENE:MS1 ..PROD:male sterility 1 protein ..[ -200:  +51]  ..CDS: +104 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.33   G -  0.07   T -  0.34   C -  0.26

      1  agaaaagttg ttaatgttac aagtcatgca catatcaaga cctaacatac
     51  aatccaatgg taacaattgt taattcacag tttaattaac ctttctcttt
    101  ctctcactca cttttccttt tcatcaccac aaagcactaA TTGTgtgacc
    151  atcatcttaa tgactactat atctctaaac ccttaacaca cttcctcaac
    201  ACTTTTCGGT CTCTTCTTAT AACAAACCCC ATCATAATAT ATATCCAAAT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00242   Mean Expected Number 0.000   +strand   -150 : -138   AATCCAATGGTaA
AC RSP00548   Mean Expected Number 0.001   -strand   -137 : -147   GTtACCATTGG
AC RSP00745   Mean Expected Number 0.005   -strand   -106 : -117   GAAAGGTTAaTT
AC RSP00748   Mean Expected Number 0.000   +strand   -146 : -135   cAATGGTAACAA
AC RSP00861   Mean Expected Number 0.006   -strand    -99 : -107   AGAAAGAGA
AC RSP01686   Mean Expected Number 0.004   -strand    -54 :  -59   CACACA

  Totally       6 motifs of     6 different REs have been found


Description of REs found

  235. Group TF: LFU /AC: RSP00242//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: AG1 /TF: LFU
  524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown
  707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1
  710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1
  797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown