> PLPR0555 ..AC:AP004046.2 ..OS:Oryza sativa (japonica cultivar-group) ..GENE:CAD2 (OsCAD2) ..PROD:cinnamyl-alcohol dehydrogenase ..[ -200: +51] ..CDS: +135 ..TSS:201 (+1) # Alternative TSS(s): -4 -2 +2 |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.22 C - 0.31
1 taaaaactgt cttgcacgaa aacaaaaaaa aaaacaaaaa cgaatcaaat
51 tgaggccgtg tggccacaga agatcctggc acgatctccg aggcagccag
101 ccttcaccaa cccctcttcc ccctctcagt cacgacccgt ccaacgcgat
151 gttttccttt aatTATATAT Actcgctgcg ggacgcacca ccccctctcc
201 AGAATTCAGC GAGAGAGAGC GAATCAGCCA CTGCACTTCT TGTTCTTGTT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00063 Mean Expected Number 0.003 +strand -146 : -137 GCCGtGTGGC
AC RSP01499 Mean Expected Number 0.009 +strand -84 : -75 TTCCCCcTCT
Totally 2 motifs of 2 different REs have been found
Description of REs found
62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown
1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500
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