> PLPR0557 ..AC:AB112026 ..OS:Nicotiana glutinosa ..GENE:ngr3 ..PROD:RNase NGR3 ..[ -200: +51] ..CDS: +450 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.30 C - 0.18
1 taataattag ttaatgcgta attttcaaaa cttaagcata tgaagatata
51 ggcaactaac attgacacat ggcgttacgc tgaacacgca acaatgaaaa
101 taaaatatta cacaaatact tggcatatac ttatcaggat attccttaac
151 gacgtgtatt gtttgccTAT AAATTgatac acaactatca aattctaaca
201 ATACCAAAAA TATATTTTCT TTCCATTTCT CATCCTAAAA GAAAGAACAA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00307 Mean Expected Number 0.009 -strand -77 : -82 GCCAAG
AC RSP00423 Mean Expected Number 0.008 +strand -50 : -45 GACGTG
AC RSP00424 Mean Expected Number 0.008 -strand -45 : -50 CACGTC
Totally 3 motifs of 3 different REs have been found
Description of REs found
294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown
404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547
405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549
Download This Page
Download Promoter Sequence in FASTA Format