> PLPR0558 ..AC:AB101032 ..OS:Solanum melongena ..GENE:SmCP ..PROD:cysteine proteinase ..[ -200: +51] ..CDS: +407 ..TSS:201 (+1) ... |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.31 C - 0.17
1 aaaatgaata gattataata aaataataaa aatacattta ttaaatgcat
51 atttaatctg atttcaaaaa aaaattgtga aatatagcta ccacacgtat
101 catgaggcgA CAATtacacg tgtcagcatc acaacggcta actcacatac
151 ctaaccatgt tctcggagcc aatatatact cgagtagcta aagaggagag
201 GAGAAAATAT CCGCATTCAT TTCTTCTTCA TTCTTCTTTT TATTATTATT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00340 Mean Expected Number 0.002 +strand -86 : -77 TaCACGTGTC
AC RSP00524 Mean Expected Number 0.005 +strand -85 : -79 ACACGTG
AC RSP00524 Mean Expected Number 0.004 -strand -78 : -84 ACACGTG
AC RSP01035 Mean Expected Number 0.004 +strand -83 : -77 ACGTGTC
AC RSP01256 Mean Expected Number 0.002 +strand -85 : -78 ACACGTGT
AC RSP01256 Mean Expected Number 0.002 -strand -78 : -85 ACACGTGT
AC RSP01288 Mean Expected Number 0.005 -strand -101 : -108 ATACGTGT
Totally 7 motifs of 5 different REs have been found
Description of REs found
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
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