> PLPR0565 ..AC:AF126810 ..OS:Nicotiana tabacum ..GENE:NtPMT1a ..PROD:Putrescine N-methyltransferase ..[ -200:  +51]  ..CDS:  +74 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.34   G -  0.15   T -  0.32   C -  0.19

      1  atggagagag aaatgagcac acacatatac taacaaaatt ttactaataa
     51  ttgcaccgag acaaacttat attttagttc caaaatgtca gtctaaccct
    101  gcacgttgta atgaattttt aactattata ttatatcgag ttgcgccctc
    151  cactcctcgg tgtccaaatt gtatttaaat gcatagatgt ttattgggag
    201  TGTACAGCAA GCTTTCGGAA AATACAAACC ATAATACTTT CTCTTCTTCA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00421   Mean Expected Number 0.008   +strand   -146 : -140   ACCGAGA
AC RSP00642   Mean Expected Number 0.009   +strand    -25 :  -18   TAAATGCA
AC RSP00653   Mean Expected Number 0.001   -strand   -189 : -199   TTCTCTCTCCa
AC RSP00865   Mean Expected Number 0.000   +strand   -198 : -190   GGAGAGAGA
AC RSP00866   Mean Expected Number 0.001   +strand   -100 :  -93   GCACGTTG
AC RSP00867   Mean Expected Number 0.001   +strand    -59 :  -52   TGCGCCCT
AC RSP00868   Mean Expected Number 0.010   +strand    -77 :  -66   TATTATATTATA
AC RSP00879   Mean Expected Number 0.007   -strand    +17 :  +11   CGAAAGC
AC RSP00953   Mean Expected Number 0.005   -strand   -148 : -156   CAATTATTA
AC RSP01475   Mean Expected Number 0.002   +strand   -121 : -113   CCAAAATGT

  Totally      10 motifs of    10 different REs have been found


Description of REs found

  402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown
  617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
  627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
  801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1
  802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown
  803. Group RE: GCC-box /AC: RSP00867//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: GCC-box /TF: unknown
  804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown
  815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family
  880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6
 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown