> PLPR0573 ..AC:X02408 ..OS:Phaseolus vulgaris ..GENE:dlec1 ..PROD:phytohemagglutinin PHA-E ..[ -200: +51] ..CDS: +16 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.37 C - 0.16
1 tatctcttta aatttaaact aattatttca tattttttca atgtatttga
51 tgacgtgtat gcattgccat cgttgcttaa ttgttatttc tatattctta
101 ttactccctc aaataatatt ataaaagaaa aaagaatcca taaagtagag
151 agagagagtg cagttgttgt tgTATAAATA gagaagagag tgatggttaa
201 TGCATGAATG CATACATGGC TTCCTCCAAC TTACTCTCCC TAGCCCTCTT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00710 Mean Expected Number 0.004 +strand -181 : -169 TAATTATTTCaTA
AC RSP00864 Mean Expected Number 0.000 +strand -54 : -46 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.000 +strand -52 : -44 AGAGAGAGA
AC RSP00916 Mean Expected Number 0.002 +strand -152 : -143 GATGACGTGT
AC RSP00997 Mean Expected Number 0.002 +strand -152 : -143 GATGACGTGT
AC RSP01258 Mean Expected Number 0.002 +strand -150 : -143 TGACGTGT
AC RSP01275 Mean Expected Number 0.002 -strand -142 : -151 TaCACGTCAT
AC RSP01654 Mean Expected Number 0.005 +strand -152 : -143 GATGACGTGT
Totally 8 motifs of 7 different REs have been found
Description of REs found
676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2
918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2)
1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1
1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown
1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5
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