Search for motifs of 1577 Regulatory Elements (REs) was performed by NSITE program [http://www.softberry.com]; version 3.2009 SET of REs: REGSITE DB: Plant Transcription Regulatory Sites [Last Update: March 15, 2009] For NSITE programs | Only one of identical REs (regardless RE NAME and GROUP) is presented in this Set Search Parameters: Expected Mean Number : 0.01 or less Statistical Siginicance Level : 0.95 Level of homology between known RE and motif: 90% or higher Variation of Distance between RE Blocks : 20% ============================================================ > A.thaliana, Chr 1: GENE: inorganic pyrophosphatase |LOCUS: AT1G01050 |PROD: the same as GENE |complement(31181..33148) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +478 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.33 C - 0.14 1 ccaaaccaaa ttatttgtga aaaatgtaat gcaagtatcc tacatagatt 51 ataggagtga ccgcaaaaac acaaactatg tttcgtaata aaaaataaag 101 tatttttaaa aagatgtaaa tctttgtaaa taATTGAgtg gtagtgtagt 151 gagtgttacg ataaTATAAA AGtttgatcc gtatatctcg gtggtgactc 201 ATATATACAT TTTACAATCA CTTGCTAGAC CAACGGGCTT CACTTGTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.003 +strand -103 : -91 AAgTATTTTTAAA AC RSP00421 Mean Expected Number 0.005 -strand -9 : -15 ACCGAGA AC RSP00750 Mean Expected Number 0.007 -strand +20 : +9 TgATTGTAAAAT AC RSP00871 Mean Expected Number 0.005 +strand -8 : +2 GGTGAcTCAT AC RSP01017 Mean Expected Number 0.007 -strand +51 : +44 AGAAACAA Totally 5 motifs of 5 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G01110 |PROD: the same as GENE |52869..54685 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.42 C - 0.14 1 tttattacgc aagagaaaat tacgctgctg ttgtcatcca gacttctttc 51 agaggatatt tggtgagcaa ttattaatga cctatatttt tactttcatt 101 tttttaacca acttgacttc tagaccactt tttagtgACA ATgatgtgtg 151 tctatgtcTA TAAAATtaac attgcttata caagatctac catttaaaag 201 ATTGGGATTT CATTTAGATA ATTTTTTTTT GGGTCTTGAT ATAAGTTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.001 -strand -56 : -67 ATCATTgTCACT AC RSP00953 Mean Expected Number 0.007 +strand -133 : -125 CAATTATTA AC RSP01640 Mean Expected Number 0.008 +strand -49 : -40 CTATGTCTaT Totally 3 motifs of 3 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AP2 domain-containing transcription factor |LOCUS: AT1G01250 |PROD: the same as GENE |complement(104491..105324) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.29 C - 0.16 1 tgaaatagaa ttacgcacac tacgtactac tatccatttg gcagtagatt 51 tggaaaatta cattccggta atcgaaagtc tatgatttaa atgtacgttg 101 ggggcattta tgtaaattca gataataaac agtaacgctt ttggttagaa 151 aatgggattg gatgagatTA TAAATGtaga taacagtgtg acttaaccac 201 ATAACAAACT CTTTAATGTC ACCACAGAGA ATGAAGCTAT CATCACCACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.009 +strand -95 : -84 ATTTATgTAAAT AC RSP00157 Mean Expected Number 0.009 -strand -84 : -95 ATTTAcATAAAT AC RSP00192 Mean Expected Number 0.002 +strand +2 : +13 TAACAAACTCTt AC RSP00377 Mean Expected Number 0.003 -strand -38 : -47 AtCCAATCCC AC RSP00559 Mean Expected Number 0.004 +strand -90 : -80 TGTAAaTTCAG AC RSP00683 Mean Expected Number 0.002 -strand -159 : -168 GCCAAaTGGA AC RSP01013 Mean Expected Number 0.003 -strand -161 : -170 CAAATGGAtA AC RSP01071 Mean Expected Number 0.006 -strand -100 : -109 CcAACGTACA Totally 8 motifs of 7 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G02070 |PROD: the same as GENE |complement(370257..370967) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.27 C - 0.17 1 acaaaaggaa ggagaaaaca gtcatttccg aaaaactccc cattttaagg 51 ttggctttct ctctaaaacc gaaaagtgaa aacgacggca agcaaactct 101 ctagtctacc tgtacatttt tactaacacg catagttgta taattacttt 151 aaacatcacg gcctaacaTA TATATAcaag ggtcgatata tataaataat 201 AAAGATTGTG AAGATATATC ATGGAGAGAG TGTGTTGCAT GTGCGGTGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.007 +strand -15 : -4 ATaTATATAAAT AC RSP00157 Mean Expected Number 0.007 -strand -4 : -15 ATTTATATAtAT AC RSP00535 Mean Expected Number 0.001 +strand -40 : -25 GCCT-- +6 bp --TATATA AC RSP00566 Mean Expected Number 0.001 -strand -20 : -29 CCTTGTATAT AC RSP01205 Mean Expected Number 0.004 +strand -161 : -152 CCATTTTAAG Totally 5 motifs of 4 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: FUS5 |LOCUS: AT1G02090 |PROD: |complement(387278..389646) |SUPPORT | 9 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.26 C - 0.16 1 aagaagaata ttcaatagtc tctctcttcc ccgggattgt ttgggctcac 51 cagacgcggt ttctaatatt tctcttagta ggccttggcc cagaaactac 101 gaaatttgag cCCAATtatt aaacaagatt ctagaagaat tcggtcggtc 151 acataaaaaa aacagtaaTA TAAAAAcgga agaaggaagg agcagagaga 201 AGAAGTTTGG GATTTTATTC GTTATTAGTG TGGTAAGAAA GAAAACCCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +51 : +43 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +43 : +51 AAACCCTAA AC RSP00653 Mean Expected Number 0.007 -strand +1 : -10 TTCTCTCTgCT AC RSP00860 Mean Expected Number 0.009 +strand +36 : +44 AGAAAGAAA AC RSP00864 Mean Expected Number 0.000 -strand -174 : -182 AGAGAGAGA AC RSP00953 Mean Expected Number 0.003 +strand -88 : -80 CAATTATTA AC RSP01031 Mean Expected Number 0.007 -strand -69 : -76 AGAATCTT AC RSP01303 Mean Expected Number 0.003 +strand +42 : +51 aAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SAM1 |LOCUS: AT1G02500 |PROD: S-adenosylmethionine synthetase 1 (SAM1) |518251..520437 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +786 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.28 C - 0.22 1 gaccaatcgg tccccaatag tcagaaaatt ttgaaaataa tgccaaaaaa 51 tagtaaatat tggtaggcca actccaaagc caaatacata tatatttctt 101 tacaagtcca aagtagggtg gtttaaccaa ataaaccggt gaccagtcat 151 tagtgaaccg taaaaggccT ATAAATAacc aacgtgttct gactcacttt 201 CTCGTCTCAA ACCGTTCCTT CTCTTTTAAC ACTTGTTCTT TTAAGGCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.010 -strand -68 : -78 TATTTGgTTAA AC RSP01006 Mean Expected Number 0.001 -strand -79 : -85 ACCACCC AC RSP01296 Mean Expected Number 0.007 +strand -32 : -24 CTATAAATA AC RSP01635 Mean Expected Number 0.001 +strand -129 : -119 CTCCAAAGCCA Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB2386 |LOCUS: AT1G02780 |PROD: 60S ribosomal protein L19 (RPL19A) |complement(607821..609435) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.31 C - 0.18 1 ccgtgtttct aaacctcaat ttataaattt ggtgtagctt ttcaaccttg 51 atgaaattat tacatagaat cattcgttaa aagacttata attgggttta 101 gaaaagccca ttttaaattt aaagcCCAAT atactgctcg aaaaggagga 151 aaccctagaa acattgtggt aTATAAATTc ttttcgtctc gttcgctaat 201 CAGTTCTCCG CCACACCAAT CTCCAGAAAA GGGGAGAAGC AAAAATGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00501 Mean Expected Number 0.004 -strand -61 : -67 CGAGCAG AC RSP01033 Mean Expected Number 0.006 -strand +32 : +23 CCTTTTCTGG AC RSP01103 Mean Expected Number 0.006 +strand -190 : -183 AAACCTCA Totally 3 motifs of 3 different REs have been found Description of REs found 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G02820 |PROD: the same as GENE |complement(623782..624474) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +170 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.27 C - 0.22 1 taaaacaagt tgttaattac atacaaaacg actttgaaaa caattttaat 51 tataagttac aactaacttt aaaaccctaa acccaaaaaa aaaaatcaaa 101 agaaacagaa aACAATaact ttgggtgaaa gcctaaattg acgcagccta 151 tctgctctgc ttcctctaTA TAAACCctcc tctcatctct cttccttctc 201 ATCTATCCTG CAAAGCATTT TGAAATCTGT CAAGAGAGAT AGGACGACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.002 -strand -74 : -79 CACCCA AC RSP00279 Mean Expected Number 0.007 -strand -121 : -129 TTAGGGTTT AC RSP00369 Mean Expected Number 0.007 +strand -129 : -121 AAACCCTAA AC RSP00385 Mean Expected Number 0.009 -strand +26 : +19 ATTTCAAA AC RSP01065 Mean Expected Number 0.001 -strand +9 : -2 AGGATaGATGA AC RSP01600 Mean Expected Number 0.007 -strand -162 : -169 TTTCAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SR1 |LOCUS: AT1G02840 |PROD: pre-mRNA splicing factor SF2 (SF2) / SR1 protein |626741..629819 |SUPPORT | 13 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.20 1 tccataaagt tggaatggtc acaggcaaat gaacctatct aacaacaagc 51 cagtttcgga gacatgtaat ttttttgttt gtgagaattt tttaagttgc 101 tttctttgta atgttttaag attttgatta aagcagataA TTGAaacgtt 151 tcttcgccac actatagtaT ATAAAAGgct cacgtgactc acgtgacgct 201 CCCTTATTAA CCTATATCGT TCGCCAACTT CGAAACCCTA AATTCCCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +41 : +33 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +33 : +41 AAACCCTAA AC RSP00985 Mean Expected Number 0.009 -strand -161 : -170 AGaTAGGTTC AC RSP01061 Mean Expected Number 0.000 -strand -9 : -17 GTGAGTCAC AC RSP01303 Mean Expected Number 0.004 +strand +32 : +41 gAAACCCTAA AC RSP01642 Mean Expected Number 0.004 -strand -134 : -143 AcATGTCTCC Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G03170 |PROD: the same as GENE |769632..770684 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +173 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.34 C - 0.23 1 catatattta aagtttttca ctagagaaaa actaccaaaa tttggatgat 51 ctggtgccag ttaaaatggt tccatattaa tagggattat aagattttat 101 tatatattca tgcaataaaa ggtgtcgaat aatataaaga atCCAATgcc 151 aagtggactc gccacTATAA ATActtgctc acccctccct cttccctttc 201 ACATTCATTC CTCTCTTCTT AACTAACATC CAATCTCTCT CATTCGTTCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.003 -strand -45 : -51 CCACTTG AC RSP00683 Mean Expected Number 0.001 +strand -53 : -44 GCCAAGTGGA AC RSP00863 Mean Expected Number 0.003 -strand +16 : +8 AGAGAGGAA AC RSP00914 Mean Expected Number 0.001 +strand -156 : -147 GATGATCTGG AC RSP00915 Mean Expected Number 0.000 +strand -156 : -147 GATGATCTGG AC RSP01296 Mean Expected Number 0.007 +strand -36 : -28 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -36 : -27 CTATAAATAC Totally 7 motifs of 7 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: extracellular dermal glycoprotein, putative / EDGP |LOCUS: AT1G03220 |PROD: the same as GENE |787122..788651 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.28 C - 0.24 1 aatgaaagaa actagatctg ctttgtgtca ttttcacata aatgagaagc 51 aaaatcacga aaccataaga gtgtcgtatg aattttgaaa gtcaaaataa 101 cgtcacacac cattatCCAA Ttattcaaaa ttagccgaca aaaaaactaa 151 acaaatctca aaaccttgtc TATAAATAca ctcaatcctc ttcttcaaac 201 TCAACATCGT CATCTCTAAC AATGGCGCCT TCTCCGATCA TCTTCTCCGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01094 Mean Expected Number 0.004 -strand -78 : -89 TAATTGGATAAt AC RSP01296 Mean Expected Number 0.010 +strand -31 : -23 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -31 : -22 CTATAAATAC AC RSP01598 Mean Expected Number 0.004 +strand -175 : -168 TGTCATTT Totally 4 motifs of 4 different REs have been found Description of REs found 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glutaredoxin family protein |LOCUS: AT1G03850 |PROD: the same as GENE |complement(976099..977760) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.35 C - 0.23 1 aaatatattt ttaagttttg gatgatttac actcaacatt aataaataat 51 cataagttta gttatagatc tttattttgg atacggtgac atggcttcgg 101 atatcaagag aatacagttt acacatgctt cATTGAcccc caaagccaaa 151 tgctctccaa aatcctctaT ATAAATTctt taataatcac atctcttacc 201 AAACGAACCC AACTACACAA GTCTCTCTCT CTTTTCCCAT TTCTCCCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.003 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +30 : +22 AGAGAGAGA AC RSP00913 Mean Expected Number 0.000 +strand -116 : -107 GGTGACATGG AC RSP01280 Mean Expected Number 0.000 +strand -116 : -106 GGTGACaTGGC Totally 4 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, Location of ESTs 203I24T7 |LOCUS: AT1G04000 |PROD: the same as GENE |complement(1028105..1029118) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +246 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.33 C - 0.20 1 caacttttat gagaataaaa aggaacaatt tagtcataaa tttatatttc 51 aatgggtaac ccaaaattga agaaacggta aagcaaagaa ggacaatcca 101 gtaaattcca attgagtggc attaatgtaa ttttATTGAa aagtagaggg 151 taatttaaac ctccagcctc TATAAATTgt cgtaacctac ccattccctt 201 AAACTTTCTG TTATCCCCTC TTTCTCTTAT TCTCTCTCTC TCGCTATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.009 -strand +13 : +6 TAACAGAA AC RSP00864 Mean Expected Number 0.002 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +39 : +31 AGAGAGAGA AC RSP01104 Mean Expected Number 0.005 +strand -44 : -37 AAACCTCC AC RSP01639 Mean Expected Number 0.001 -strand -103 : -112 GATTGTCCTT Totally 5 motifs of 4 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: self-incompatibility protein-related |LOCUS: AT1G04645 |PROD: the same as GENE |complement(1293769..1294262) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.37 C - 0.17 1 ttattatttt attttttttg tctgggtcaa aaccacacta aattctcatt 51 ttactgattt ggatgtttgt ttggtcacat gacttttaca ctgatttctt 101 tgtttgtttg gTCAATagtc aatgggatag ttactatgtg aagaaaccgt 151 cgagcccttg gaatacTATA AAATcaactc caagagcaac ctgaaaagcc 201 ACATTCATAA ATACAAACAT CAAAATGGAA AAAGTTTCTA TTGTTTGCTT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05060 |PROD: the same as GENE |complement(1451057..1452871) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.29 C - 0.18 1 tttttgcaac ctcgggttaa aagtcaaaaa gagcttctct ccaatctatc 51 ttccttcttc aaccttgatc tccaaggttg ggaaatcgtt tttttaatcc 101 tATTGTcgat taaaaatcat atctttttat ggatatctga gaccgaagaa 151 gatataataa tatgTATAAA TAagaagcaa cgagactaat caaccgaaac 201 AACAACAAAA GAAAATGAGT TTTCTTGGAG CAGGGAGACT CGCGGGAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.002 -strand +49 : +42 TTTCCCGC AC RSP01209 Mean Expected Number 0.004 +strand -78 : -69 CTTTTTATGG Totally 2 motifs of 2 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RCI3 |LOCUS: AT1G05260 |PROD: |1529767..1531438 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.28 C - 0.19 1 atctcttcat tagtaagagt attaaaaaac cattttgtaa ttatgaataa 51 aaatttctca aatttttatt gtggcgctga ttatgagcca gaaaaataaa 101 gtagaaaaag agcacatgtt agttagctta gatggaccca cttctactac 151 caaacatgca aactcttcta TATAAACCta tgttaacgtc tcaatacatc 201 ACACAACATA ATCCTCCCAA ACAGAGAGAG TCTCAAAAAT TAAACCAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00596 Mean Expected Number 0.006 -strand -126 : -131 GCCACA AC RSP00654 Mean Expected Number 0.005 +strand -66 : -57 gACCCACTTC AC RSP00749 Mean Expected Number 0.003 +strand -169 : -158 ATTTTGTAATTA AC RSP00808 Mean Expected Number 0.009 +strand -83 : -77 GTTAGTT AC RSP01014 Mean Expected Number 0.005 -strand -188 : -197 CtAATGAAGA Totally 5 motifs of 5 different REs have been found Description of REs found 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC: RSP00810 RSP00812 RSP00813 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05575 |PROD: the same as GENE |complement(1661690..1662186) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.31 C - 0.21 1 tgtataatat tcatacacaa aaaaaactca cgtctacttt gaccaggtca 51 aaatcaaagt ttaaatggaa atcttctaca tatgcgataa attaaattgt 101 ttacttgtgt ttcgtagctt cgaggtctct gcctctggtc aaataaggcc 151 atcttctctt ttcgatctct aTATAAACCa gcgactgtct gattagaaac 201 ATCAATCTCT AACTCATAGA TCTTAAGACA ACAACAACAA CAAAAAAGTC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RanBPM-related |LOCUS: AT1G06060 |PROD: the same as GENE |1832942..1835576 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.32 C - 0.16 1 caaactataa gatttttttc ccttaatttt tacacctaat caagtaaaaa 51 ggaaaaaaat tagaaaaaga aaaagaaaag taatgttagt ttttactttt 101 tcctattttt ttttgtcaaa aatcgtcaaa ataaccaaaa aacattaaaa 151 aaaaatccaa attaaAATAA ATAaaagaac ttttgttttg ggctttccac 201 ATCGTAAACT ATAATCGGCG TCTCTCCGGA CTCACACCTC ATCGAAATTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 -strand -100 : -111 AAAAAGTAAAAA AC RSP00847 Mean Expected Number 0.003 +strand +34 : +43 aCACCTCATC AC RSP00997 Mean Expected Number 0.003 -strand +43 : +34 GATGAGGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ADS1 |LOCUS: AT1G06080 |PROD: delta 9 desaturase (ADS1) |1843569..1846299 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.31 C - 0.22 1 ttttattatt ttcacaccaa gttaatgaag tgataacgac tacgtcccaa 51 ctgcaacaat ttacagatag gataaaaaag aggtagcatg cattagagaa 101 taaattacgg cgtccgttag taagTCAATt cactctattc aattttttac 151 cctccatgct acTATAAATT acaacgatac tcactcacaa aacctaaacc 201 ACTATAACAC TCTTTATACA AACTTCAAAT CCACAAAGAG TCTTTTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.009 -strand -192 : -200 ATAATAAAA AC RSP00880 Mean Expected Number 0.004 +strand -153 : -144 CAACtGCAAC AC RSP01135 Mean Expected Number 0.001 +strand -136 : -124 AGATAGGATAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 1053. Group RE: I-box-like sequence /AC: RSP01135//OS: Cucumis melo /GENE: Cucumisin/RE: I-box-like sequence /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G06135 |PROD: the same as GENE |1862196..1862741 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.29 C - 0.18 1 gatcaattcc tacgcttgtt ttatcaaata tttgaaagcc atttgttttt 51 gtagtaaagt caaagtcaaa gatatatata catacatata caagctagtg 101 aggatgatcc caaagtcaag ccatgaggtg ttgaCCAATa actctacata 151 taTATATATA tatatatata tatagactta aaatgaaacc ccatgcaaac 201 AAAAAAAGGC CTACACTCTA CAACCAATTT TACGTGCCAA TACACACAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00727 Mean Expected Number 0.006 -strand -80 : -86 GCTTGAC AC RSP01033 Mean Expected Number 0.008 -strand +9 : -1 CCTTTTTTTG Totally 2 motifs of 2 different REs have been found Description of REs found 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGPAT1/GPAT1 |LOCUS: AT1G06520 |PROD: |complement(1993977..1996111) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.35 C - 0.21 1 attagataaa aactttatag acgttgtgtc gttgagttaa tgcgagagag 51 atgtgtgggt taaccaaaat taaaatagaa aagaagaagt taatttaaaa 101 gcaaattttt ttaaaaaggg tcaaccttca caccaccttt gcactcgcct 151 atcatcatca ctcacttaTA TAAACCtcct ctgttacttc tttgtcttct 201 CCAACACATT TACTTTTCTT CTTCTTCTCT CTCTACGCCA TAGCTATGGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00773 Mean Expected Number 0.002 +strand -168 : -159 TGAGTTAATG AC RSP00864 Mean Expected Number 0.002 -strand +34 : +26 AGAGAGAGA AC RSP01104 Mean Expected Number 0.005 +strand -29 : -22 AAACCTCC Totally 3 motifs of 3 different REs have been found Description of REs found 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glutaredoxin family protein |LOCUS: AT1G06830 |PROD: the same as GENE |2097150..2097654 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.35 C - 0.21 1 catattattg gtccttacaa tcaaaagggt aaaggctgcc gaagaaaagg 51 ttcggtctcg tcgaatcatc ttgctcatat ataataaagt cggacttggg 101 aacattttca acgatcttct tgtgatctct gtatgtggat tcttattcag 151 ttattcttcc ctcctgtTAT AAATAgcctg agactctagc tactcctttc 201 AATCCATATA CTTCTTCTTC TTCACCTTAT GCAAGATAAT GGACAAAGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 +strand -179 : -173 CAAAAGG AC RSP00254 Mean Expected Number 0.006 -strand -151 : -157 CCTTTTC AC RSP01621 Mean Expected Number 0.005 -strand -170 : -179 TACcCTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G07020 |PROD: the same as GENE |complement(2154900..2156007) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.37 C - 0.20 1 aaagctttga tgtttctgga atatcgcaac tccgtcaaat tcgtatattt 51 gatatctcac actcggataa tttgtgtctg tttcaagttc cagccgatgc 101 aactaaggtc ctgactttga ttcatgtttg ggcctcatat agtgggcatc 151 ttttaatatg ggctTATATA TAtatatata tggatctggt aatccgagtc 201 AACTCAGTCG TCTCAATCCG TGTAACAACT TCATCGTCTT TTTCAGTTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00195 Mean Expected Number 0.001 +strand +17 : +27 TCCGTGTAaCA AC RSP00459 Mean Expected Number 0.005 -strand +2 : -8 TTGACTCGGA AC RSP00597 Mean Expected Number 0.003 +strand -135 : -124 GaTAATTTGTGT AC RSP00756 Mean Expected Number 0.003 +strand -145 : -138 CTCACACT AC RSP01597 Mean Expected Number 0.002 +strand -59 : -49 GTGGGCATCTT AC RSP01602 Mean Expected Number 0.006 +strand +11 : +18 TCTCAATC Totally 6 motifs of 6 different REs have been found Description of REs found 188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PCNA1 |LOCUS: AT1G07370 |PROD: proliferating cell nuclear antigen 1 (PCNA1) |2263140..2264549 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 tcgaaatgaa cttttcttct ttttattaat acaaattaac cctctaactt 51 ttataatgac caaaaatatc catccaattc ttaaaacgat tgaggccggc 101 actagcgcAT TGGcgggaac caaatagctt agaatggcga aatcccgcca 151 gaaaagaaaa agctTATAAA TCggactcct tgaccttata gtgtcaatcc 201 ACTTTCCAAA ATAGCCGCAA ACGATTCTCA TTGTGAACTC TGATAATATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00299 Mean Expected Number 0.000 -strand -81 : -92 gTTCCCGCCAAT AC RSP00597 Mean Expected Number 0.004 -strand -161 : -172 GTTAATTTGTaT AC RSP01078 Mean Expected Number 0.002 +strand -135 : -124 ATAtCCATCCAA Totally 3 motifs of 3 different REs have been found Description of REs found 288. Group TF: E2F /AC: RSP00299//OS: Nicotiana benthamiana /GENE: PCNA/RE: E2F-2 /TF: E2F 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein phosphatase 2C, putative / PP2C, putative |LOCUS: AT1G07430 |PROD: the same as GENE |complement(2280832..2282825) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.23 T - 0.24 C - 0.12 1 ggtcaagatt gattctaatt tagacgaaag accaacacgt cacgtcgcta 51 gagtaaaaga ttttttgaag gcggagggag aaaaatcaaa agttaaaagt 101 aatttgaaaa cgaggaagag aaaaaggaat tttaaaatgt ttaatgaagc 151 ggtaggccgc atgggtaTAT AAATGggcac gctttgtaac gtgtaacgat 201 GATATTTATT CAACTGCGTG GTATAACCAA AAAAAAAAGA AACACTATTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.008 -strand -136 : -143 AAAAATCT AC RSP00889 Mean Expected Number 0.005 -strand +21 : +15 CCACGCA AC RSP01150 Mean Expected Number 0.009 -strand -181 : -191 AATTAgAATCA AC RSP01258 Mean Expected Number 0.002 -strand -159 : -166 TGACGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MT1C |LOCUS: AT1G07610 |PROD: metallothionein-like protein 1C (MT-1C) |2341539..2342120 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.13 T - 0.27 C - 0.14 1 acaagaaagc tatatgtata tctcatatac aaaaactttg ctaaccctat 51 catatacgaa actaaaactt acaggaaaat ataaaatata tatagggagg 101 ttgacaaaag ataatatata tatataggaa atgtatggtg gatataaaac 151 cgatatttta tattcttcTA TATATActgg ccattccctt agttgaaatc 201 ACATAAAGCA TCAGAAGAAG AAAAAGAAAA CTACAAAATC AATCAAAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.009 -strand -57 : -63 TATCCAC AC RSP00333 Mean Expected Number 0.001 -strand -63 : -71 CCATACATT Totally 2 motifs of 2 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G07980 |PROD: the same as GENE |complement(2473162..2474924) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.27 C - 0.18 1 aatgttttac gaggtgtatg cgaaacagtg aaagcatgtc caataattta 51 ttttgaagta gtcgtcatgc atcttcattc ctcaacatca ccatgtccat 101 tccttaaATT GAtcatatga taaatgggcc taaaaggctc aaacaaataa 151 gcccaTGTAA ATAtccatcg atttattcag gcgaaagggt gaaacatact 201 GTAGTTCTAA AAAATTAATG GTGTCGTCAA AGAAACCCAA GGAGAAGAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00698 Mean Expected Number 0.004 -strand -22 : -32 TGAATaAATCG AC RSP01470 Mean Expected Number 0.006 +strand -136 : -127 TCATGCATcT Totally 2 motifs of 2 different REs have been found Description of REs found 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GPI-anchor transamidase, putative |LOCUS: AT1G08750 |PROD: the same as GENE |2801070..2804540 |SUPPORT | 10 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +216 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.32 C - 0.17 1 gggataatta attggaattt tttacgaaat caaactgttg aaaaaaaaat 51 caaagagaaa ttctatattg aatttaagaa agtaaaaaac catttaataa 101 aattttaacg ataatttaat gtaaTCAATt tatccaataa ttcacaacaa 151 aatagacaaa gtaatcaTAT AAAAGgattt atttactccg tcgtttgctc 201 CCGTCTTCAC CGTTTCCTTC CACGCCTCCG CCGGCAAGCT AGTTTTCTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 +strand +19 : +28 TCCACGcCTC AC RSP00838 Mean Expected Number 0.006 +strand -13 : -8 CCGTCG AC RSP01094 Mean Expected Number 0.005 -strand -61 : -72 TtATTGGATAAA Totally 3 motifs of 3 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H3 |LOCUS: AT1G09200 |PROD: the same as GENE |complement(2971595..2972201) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.31 C - 0.24 1 aaatctgtcc gtagaattgt attaatctac ggttgctgtg atttcacgcg 51 gatcgtgata gaaacctctt atatccgttg attaaaaacc aatgaacgat 101 ccagatctaa tcccgctgaa aaagaaaagc gaaatatttt ccctcccact 151 tcttgtaatt tccagacGAT AAATAtcccc ttcctcaatc gaaacaaact 201 ATCCAGATCT CAACTTTCTC TCATCTTCAA ATTAAAATCA AACAGTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.001 +strand -157 : -147 TCACGCGGATC AC RSP00431 Mean Expected Number 0.006 +strand -176 : -165 ATCtACGGTTGC AC RSP00839 Mean Expected Number 0.001 +strand -154 : -147 CGCGGATC AC RSP01733 Mean Expected Number 0.009 -strand -150 : -155 CCGCGT Totally 4 motifs of 4 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: nicotianamine synthase, putative |LOCUS: AT1G09240 |PROD: the same as GENE |2984883..2986132 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.27 C - 0.20 1 taaataaatc ttttacttca aaacctaaat ataaggatct attcttaatt 51 agttaaacaa aaaaagaaac aaaaacgcaa gtgtacgtta tatagtatat 101 ttgaataatg aaatgttaaa ataattagat tctttttcta gttgatgtag 151 atccccaacc ccacgccAAT AAATAtccat ccctccagtc caaacagttc 201 ACACCACCCG AGAACACACG ATTATTCTCC AAAGAGAAAG AGAAAAATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.002 +strand +35 : +43 AGAAAGAGA AC RSP00887 Mean Expected Number 0.001 -strand -67 : -75 AAGAATCTA AC RSP01092 Mean Expected Number 0.005 -strand -66 : -76 AaAGAATCTAA AC RSP01435 Mean Expected Number 0.004 +strand -49 : -40 TCCCCAACCc AC RSP01711 Mean Expected Number 0.007 -strand -60 : -69 CTAGAAAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G09380 |PROD: the same as GENE |complement(3026137..3029551) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +227 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.35 C - 0.16 1 agcaaggaga aaatttaaat aaattgccaa aaatatcaaa tgattcatat 51 cacctattgt ttcgtgttct tatgccctaa agagagtcca agtgttacaa 101 gcaaacttca ttctcgaacc gtttctcacc tttctgttta aaacatctct 151 ctctatatat atgtatgtaT ATAAATAaat atatgtatgt gcatgtatat 201 ATAAATGTGT GTATATATAC ATCTTTGGCT ATAAATATAA GGTCGAACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 -strand -6 : -12 CATGCAC AC RSP00103 Mean Expected Number 0.003 -strand -9 : -18 GCACATACaT AC RSP00864 Mean Expected Number 0.001 -strand -47 : -55 AGAGAGAGA AC RSP01237 Mean Expected Number 0.002 +strand -50 : -41 CTCTATATAT AC RSP01296 Mean Expected Number 0.010 +strand +29 : +37 CTATAAATA Totally 5 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G10380 |PROD: the same as GENE |3400607..3402325 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.33 C - 0.16 1 gtttggtttt gcacattatc taatgttgta atccgtcata tgatggtatg 51 tatagataat agacccaacc aaaagaatct aggatttaac aacaacaaaa 101 aaagtaaaaa actatatata aactaattta tattcttatA TTGAcaaaaa 151 taaacgccta tgttttgcaT ATAAATGtac attcacatat gcaatttagt 201 ATCCCGCTTA GCATTGCATC TATATTAGGT TACATTCACT CACACAATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.004 -strand -72 : -85 AAATTAgTTTATAT AC RSP00021 Mean Expected Number 0.001 +strand -102 : -91 AAAAAGTAAAAA AC RSP00127 Mean Expected Number 0.007 -strand +8 : +3 AGCGGG AC RSP00716 Mean Expected Number 0.001 -strand -190 : -198 CAAAACCAA AC RSP00887 Mean Expected Number 0.004 +strand -128 : -120 AAGAATCTA Totally 5 motifs of 5 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ZFP5 |LOCUS: AT1G10480 |PROD: zinc finger (C2H2 type) family protein |3449692..3451227 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.07 T - 0.33 C - 0.21 1 tttattataa accctaaaat actataactt gatgctgttc atgactaata 51 taaaaaaccc ttcatacaat ataaaatttc tttagacata caatatatta 101 tactattaca gatGCAATgc atcattagtt acaaactatt aaactaaata 151 tcccccgtct ctctcttgct aTATAAAGAa gatcatttac acatctcctt 201 AAGCAAATTA AACCCATCGA TAAACACATA CGTTCACACA TATATGTCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.003 +strand +24 : +33 aCACATACGT AC RSP00279 Mean Expected Number 0.007 -strand -184 : -192 TTAGGGTTT AC RSP00369 Mean Expected Number 0.007 +strand -192 : -184 AAACCCTAA AC RSP00864 Mean Expected Number 0.002 -strand -35 : -43 AGAGAGAGA AC RSP00934 Mean Expected Number 0.007 -strand -50 : -59 ATATTTAGTT AC RSP01233 Mean Expected Number 0.009 -strand -31 : -37 AGCAAGA AC RSP01303 Mean Expected Number 0.002 +strand -193 : -184 TAAACCCTAA AC RSP01304 Mean Expected Number 0.007 +strand -193 : -184 TaAACCCTAA AC RSP01499 Mean Expected Number 0.003 +strand -50 : -41 TcCCCCGTCT Totally 9 motifs of 9 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DNA-binding protein-related |LOCUS: AT1G10590 |PROD: the same as GENE |complement(3502045..3503458) |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +424 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.30 C - 0.14 1 cacggtccag tgaaattggt tttgataacc gattcggaga atagagggtg 51 taatcagtat tagtcaaagt tataaggtca atcttaaata tataaaaaaa 101 tataagggta gttttaatga agatgtttca gaaacatgac acgtgttgag 151 gtcacggatc tacggtgagT ATTAATAtct gagttctaga gttataaaga 201 AGACCGCCGC GTCTTTGTGT ATATCGCCTC CACAGATCTA ATCGCTAAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 +strand -199 : -192 ACGGTCCA AC RSP00142 Mean Expected Number 0.001 +strand +5 : +11 CGCCGCG AC RSP00524 Mean Expected Number 0.008 +strand -62 : -56 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -55 : -61 ACACGTG AC RSP00716 Mean Expected Number 0.002 -strand -177 : -185 CAAAACCAA AC RSP00836 Mean Expected Number 0.001 +strand -48 : -41 CACGGATC AC RSP00892 Mean Expected Number 0.003 +strand -29 : -21 TTAATATCT AC RSP00940 Mean Expected Number 0.005 +strand -43 : -34 aTCTACGGTG AC RSP01016 Mean Expected Number 0.010 +strand -71 : -64 AGAAACAT AC RSP01035 Mean Expected Number 0.008 -strand -57 : -63 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -62 : -55 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -55 : -62 ACACGTGT AC RSP01463 Mean Expected Number 0.003 -strand -104 : -116 tTTTATATATTTA AC RSP01507 Mean Expected Number 0.001 -strand -41 : -48 GATCCGTG Totally 14 motifs of 12 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G10650 |PROD: the same as GENE |complement(3524019..3526336) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1017 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.31 C - 0.25 1 gcgtaatgaa agagaaatac acaactcacg aaagaaaaga cgagaaagca 51 ccaccaacgg ttcttgtttg gtgtttacat ttactatcaa ccattttttg 101 tttcttttct caaagttttt ttttgttttg aatgattcaa aaaaaaaaaa 151 cgTATTAATA atttcatatc gaaaatcgcc aacccaactt cccccacttc 201 TTCCACCACT GTCCCGCTCC ATCGCACCCG CTTTGCTTAC CACATCCATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01017 Mean Expected Number 0.006 -strand -96 : -103 AGAAACAA AC RSP01702 Mean Expected Number 0.008 +strand -54 : -45 AAaACGTATT Totally 2 motifs of 2 different REs have been found Description of REs found 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ACLA-1 |LOCUS: AT1G10670 |PROD: expressed protein |3535512..3538282 |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +276 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.31 C - 0.12 1 taatccaaat tctaatgcaa ttatttgcta aatcctacaa aagtatatac 51 tataaagatt tgagaaagaa ataaacatta aattatgtgc atatgtaaaa 101 tgattgttgg ttataatact aaataataaa gtttataACA ATattttaca 151 aatttggaag ttgcaacTAT AAATGgtaaa ttcggtcctt aagattagaa 201 GACAAAGAAG AGTCGTGTTG GTGAGCTAAC TACCCAACCT GTGAAGCTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.009 +strand -179 : -169 TATTTGCTaAA AC RSP00950 Mean Expected Number 0.000 -strand +25 : +15 CTCACCAACaC AC RSP00998 Mean Expected Number 0.001 -strand -67 : -80 AAACTTTATtATTT Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G10770 |PROD: the same as GENE |complement(3591634..3592412) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.11 T - 0.26 C - 0.17 1 gagtatactt atgtatcaaa gaagtattgt cctatgctta aaaaagataa 51 aagaagataa tctccttaaa acaagataaa cctcagattg cattacatta 101 aaataaaacg agaaaacgca aaacgcgcac caccaACAAT ttcaaaacca 151 aaaaaacttg tcTATATATA acgtgattaa ctcctgcatt gaaaaatgac 201 CTGGTGATAA TTTCTTCTCA ATTCAAATAC ATAAATAAAT ATCAATAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.006 +strand -82 : -75 CAAAACGC AC RSP01210 Mean Expected Number 0.003 -strand -155 : -164 CTTTTTTAAG AC RSP01559 Mean Expected Number 0.007 +strand -78 : -73 ACGCGC AC RSP01699 Mean Expected Number 0.007 +strand -30 : -24 ACGTGAT Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G11380 |PROD: the same as GENE |3832623..3834189 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.25 C - 0.17 1 gagcatattg gataagaata aacatcaatc actctttcca ctagacgaat 51 atcttacgtg gcaacagctg taccgttaat aatgacagtt tttagctgtg 101 tttatgaata attaattacc cgccaaatca ctaacgcttt aaaaaaaaca 151 acaactttaa gaaaacaAAT AAATAaataa aagagtatca aaaggcgttc 201 ACCAAAAAAG GTACAAAGTC CTTTGGGAGA AGATATCATC AAAGAGAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -146 : -139 TACGTGGC AC RSP00247 Mean Expected Number 0.001 -strand -139 : -148 GCCACGTAAG AC RSP00248 Mean Expected Number 0.001 -strand -139 : -148 GCCACGTaAG AC RSP00858 Mean Expected Number 0.008 -strand -81 : -88 GGTAATTA AC RSP00877 Mean Expected Number 0.000 +strand -82 : -74 CCCGCCAAA AC RSP01033 Mean Expected Number 0.001 -strand +11 : +2 CCTTTTTTGG AC RSP01034 Mean Expected Number 0.003 +strand -145 : -139 ACGTGGC AC RSP01214 Mean Expected Number 0.005 -strand +11 : +2 CCTTTTTTGG Totally 8 motifs of 8 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G11850 |PROD: the same as GENE |3999201..3999875 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.18 1 tacatatcgt ttgacattgt actctttgaa aagagactaa cactaatatg 51 ttagtaagac taatttatat ttagctacat tgtactcaag gtcctatatc 101 caaagtttta tctgcatttA TTGCacactt acattacgta tgtgtgtgta 151 tacataacag ccTATATATA tggtcttgta acacagctca gggattcacc 201 ATAAACAAAA AGAATTTGAA CCAACAAAGC AAAACATGAA AGGCACATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.003 -strand -56 : -65 aCACATACGT AC RSP00447 Mean Expected Number 0.008 +strand +23 : +32 AaCAAAGCAA AC RSP00642 Mean Expected Number 0.008 -strand -81 : -88 TAAATGCA AC RSP01600 Mean Expected Number 0.009 -strand -170 : -177 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SEC22 |LOCUS: AT1G11890 |PROD: vesicle transport protein SEC22, putative |4010778..4013122 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +730 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.26 C - 0.19 1 cgctaagatg aatgtagcgt ttgtgaagct aattaaacga gccacgtcat 51 caagacatgt caacaaaacg cgtcataagc ccaatcacgt gagggctggt 101 aATTGGtaat cgcaaaacgt agatcgccat aaattaaatt tcgaacagac 151 aaaaaaagaa aagaaaatcA ATAAATAatc atttagtccc tttgtttgat 201 AAACCCTTTA ATTGAAAAAA AAAACAAATT ACTTCTCTTT CCTTCGATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -152 : -160 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 -strand -152 : -159 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -159 : -152 CCACGTCA AC RSP00248 Mean Expected Number 0.002 +strand -160 : -151 GCCACGTCAt AC RSP00460 Mean Expected Number 0.004 +strand -147 : -138 GACATGTCAa AC RSP00653 Mean Expected Number 0.001 +strand +33 : +43 TTCTCTtTCCT AC RSP00734 Mean Expected Number 0.006 +strand -137 : -130 CAAAACGC AC RSP00819 Mean Expected Number 0.001 +strand -160 : -151 GCCACGTCaT AC RSP00821 Mean Expected Number 0.001 +strand -160 : -151 GCCACGTCaT AC RSP00847 Mean Expected Number 0.004 +strand -159 : -150 CCACgTCATC AC RSP00913 Mean Expected Number 0.002 -strand -150 : -159 GATGACGTGG AC RSP00915 Mean Expected Number 0.004 -strand -150 : -159 GATGACGTGG AC RSP00916 Mean Expected Number 0.002 -strand -150 : -159 GATGACGTGG AC RSP00997 Mean Expected Number 0.004 -strand -150 : -159 GATGACGTGG AC RSP01034 Mean Expected Number 0.004 -strand -154 : -160 ACGTGGC AC RSP01275 Mean Expected Number 0.003 +strand -160 : -151 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 -strand -150 : -160 GaTGACGTGGC AC RSP01692 Mean Expected Number 0.004 +strand +43 : +50 TTCGATCA Totally 18 motifs of 18 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G12080 |PROD: the same as GENE |4084203..4085041 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.08 T - 0.43 C - 0.18 1 tctaaatcta tgtggcatga ggtgtaaaat tgtacattat ttttttatat 51 aagcaaaaaa ggttctttca tgtgcaatac tcatcatcat ggttctttat 101 agaaattaat ttttttttta atttatattt agtaaaACAA Tttttttatt 151 gtaaaccatt tgcttctacT ATAAATAccc ctcctcttga tcaaatctct 201 TCACTCATCA AAACATCACA TACACTATTT TTCTCCTCTC CTTATTGTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.006 +strand -102 : -92 ATAGAAATtAA AC RSP00596 Mean Expected Number 0.005 -strand -185 : -190 GCCACA AC RSP00621 Mean Expected Number 0.000 +strand -23 : -15 CCCCTCCTC AC RSP00870 Mean Expected Number 0.005 +strand -178 : -169 TGTAAAAtTG AC RSP01296 Mean Expected Number 0.009 +strand -32 : -24 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -32 : -23 CTATAAATAC AC RSP01520 Mean Expected Number 0.008 -strand -178 : -183 ACCTCA Totally 7 motifs of 7 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1371. Group TF: HBP-1a /AC: RSP01520//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Hex123-a /TF: HBP-1a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H3, putative |LOCUS: AT1G13370 |PROD: the same as GENE |complement(4587777..4588610) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.28 C - 0.26 1 tcaacaaact caacaagaaa atggaccaat aagaatcgaa agcgcagatc 51 gccacatatg cataatctta atcaaaatca aatatggacc gtcgaacatg 101 cctttaatcg cacgtctatc aactcctctc cccaaaatta accgacctaa 151 ttctcacacc tcgtcacTAT AAAATtcact aatctttttt acttttctct 201 ACATCAAAAC ACAACATTAA AAGCTTTGGC GATTTTTCTC TCTGATTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 -strand -4 : -15 gAAAAGTAAAAA AC RSP00097 Mean Expected Number 0.000 -strand -109 : -116 ACGGTCCA AC RSP00234 Mean Expected Number 0.005 -strand +24 : +15 GCTTTTAATG AC RSP00879 Mean Expected Number 0.007 +strand -164 : -158 CGAAAGC AC RSP01527 Mean Expected Number 0.005 +strand -200 : -189 TCAACAAACTCA Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: sulfotransferase family protein |LOCUS: AT1G13420 |PROD: the same as GENE |4604838..4606050 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.28 C - 0.18 1 tttaacaatc ttatattacg ggttgaaaaa aataaatcaa ccaccacgtt 51 atttcatgaa cgttataaag gatctctcaa gatatgaaag atcacatgtt 101 ttgtacacat cagctttcaa cgtgtgtaac gtgagtgttt gatcaactac 151 tacgttaaca tccaacacTA TAAATAgtaa ttttgcgatt gcaataagtc 201 ACAACACTCG ACACAAAAGC AAAAACAAAA ATGGGTGAGA AAGATATTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.009 -strand +37 : +32 CACCCA AC RSP00188 Mean Expected Number 0.002 +strand -84 : -75 TCAACGTGTg AC RSP00354 Mean Expected Number 0.004 -strand -44 : -51 TAACGTAG AC RSP01072 Mean Expected Number 0.008 +strand -186 : -177 ATTACGgGTT AC RSP01296 Mean Expected Number 0.009 +strand -33 : -25 CTATAAATA AC RSP01469 Mean Expected Number 0.006 +strand -109 : -100 TCACATGTtT AC RSP01755 Mean Expected Number 0.003 +strand -163 : -156 CAACCACC Totally 7 motifs of 7 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: tobamovirus multiplication protein 3 |LOCUS: AT1G14530 |PROD: the same as GENE |complement(4970853..4973717) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.25 C - 0.21 1 cacgtggaac tatgataaca acgttgcgtg tcggtcacca gaacatctcc 51 acacggagag aaccaccggc tatatccggt tactttttca atctcctctt 101 cagtttcttc cacgtcattc taagtattcc ctgtcacggc cggtctcaaa 151 tcttatttcg ggtaatacTA TAAATAcctt aaaacaaaaa aaaatggaag 201 AAAAATAAAA TAAAAATCTA GGAAGGAGAA GGAGAGAGGA GAAGTGATTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.003 -strand -84 : -91 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -91 : -84 CCACGTCA AC RSP00653 Mean Expected Number 0.004 -strand +40 : +30 TcCTCTCTCCT AC RSP00888 Mean Expected Number 0.006 +strand +12 : +20 AAAAATCTA AC RSP00941 Mean Expected Number 0.005 +strand -115 : -108 TTTCAATC AC RSP01032 Mean Expected Number 0.003 -strand -40 : -49 CCGAAATAAG AC RSP01275 Mean Expected Number 0.004 +strand -92 : -83 TCCACGTCAT AC RSP01296 Mean Expected Number 0.004 +strand -33 : -25 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -33 : -24 CTATAAATAC AC RSP01594 Mean Expected Number 0.005 -strand -108 : -115 GATTGAAA AC RSP01734 Mean Expected Number 0.010 +strand -92 : -86 TCCACGT Totally 11 motifs of 11 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G15010 |PROD: the same as GENE |5171202..5171737 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +8 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.26 C - 0.19 1 ttggccgtgt cgacaaattt gtaaaagacg tgtaaagctg aaattgagaa 51 gaaacaaaag tgaaattgta aggaaacgtg atcgatggtg accccatcaa 101 tattacgata aggtaacgcg ctaaagcagc cttagccgtt tttattaaat 151 attatccaaa tataactTAT AAATAatccc accaattgtg tctcctaagc 201 AACAGAAAAT GGAAATGATA CTGATCTCGT CATCGACACT CAGGTTCCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand -162 : -152 TGAAATTGaGA AC RSP00039 Mean Expected Number 0.007 +strand -140 : -130 TGAAATTGTaA AC RSP00916 Mean Expected Number 0.002 -strand +34 : +25 GATGACGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, ESTs gb|AA650895 |LOCUS: AT1G15270 |PROD: the same as GENE |complement(5250653..5252097) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.33 C - 0.21 1 ttaattaatc gattttattt tgttatttcg cgcattaaat ataacgactg 51 tgacctaggt tgacccaaat aaaggtattt aacgggccca aaaagaaatt 101 tgtaggcctt ttaatgggcc atacactttc agagcccatt taataggttg 151 cgttgttact acgaactcat TATAAATAtg aaccgtagcc ccaatcagag 201 AGATTCGATA CCGTCTGCAA CTCTCAGCTA CTTTTTCCCC AATTTTGAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.005 +strand -199 : -191 TAATTAATC AC RSP00698 Mean Expected Number 0.004 +strand -200 : -190 TtAATTAATCG AC RSP01209 Mean Expected Number 0.006 -strand -127 : -136 CTTTATTTGG AC RSP01215 Mean Expected Number 0.001 -strand -126 : -136 CCTTTATTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G15360 |PROD: the same as GENE |5283536..5284668 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.07 T - 0.30 C - 0.25 1 gtttaccttt ataataacca tccttcacat tagcaatcaa tctacaccaa 51 caactacaac taaattctat ctctctctct ataataaact agcgagcgag 101 gacgtcaaat gtaataagag taagaacaag tacacctttt catccaccaa 151 aatttaacct atgtaTATAA ATAtacaaca ttaccattta ccaaacatcc 201 ATCTTACATA TATTACTCAT CATCAAGTTC CTACTTTCTC TCTGACAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00071 Mean Expected Number 0.008 +strand -100 : -95 GACGTC AC RSP00071 Mean Expected Number 0.008 -strand -95 : -100 GACGTC AC RSP00864 Mean Expected Number 0.002 -strand -121 : -129 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -123 : -131 AGAGAGAGA Totally 4 motifs of 2 different REs have been found Description of REs found 70. Group RE: C-box /Group TF: RITA-1 /AC: RSP00071//OS: Oryza sativa /GENE: rifa-7-P-glucuronidase transgene/RE: C-box /TF: RITA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G15380 |PROD: the same as GENE |5290740..5292529 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +210 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.35 C - 0.16 1 aacttataaa gactaaacct attacaagaa ataagatctt ataggccgaa 51 tttgtttggt acgttgatga tccaaatata aataatagtt tttctttttc 101 tttttaatta tgaaaggtta aaaattcata aaaaaaatta cccatatttg 151 cttaagacgc tagcttttcT ATAAATAcag catagccatg tgtaattgat 201 CATCAGATAA GTTCCGTGGT TATCCCATTA ACCTTCTTTC TACACAACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.000 +strand -56 : -46 TATTTGCTTAA AC RSP00741 Mean Expected Number 0.003 +strand -89 : -78 gAAAGGTTAAAA AC RSP01301 Mean Expected Number 0.002 +strand -32 : -23 CTATAAATAC Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CCR1 |LOCUS: AT1G15950 |PROD: cinnamoyl-CoA reductase, putative |5478748..5482159 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.11 T - 0.41 C - 0.16 1 taaggtgtgt agttctaaat gtttcttctt cttccaccaa cccctctttc 51 tatatgtatg ttcttttttc taaaataatt gtttgttctt ttttagatat 101 atcaaattaa atataaaaaa tattgacaaa acttatttac cATTGTtagg 151 tgaacttggc aagtgtgtaa aTATAAAGAt aacattcctt ttcgttcttt 201 ATATATACGA AACGTACCAC AAATTTCTAA CTAAAGCATT CATAGTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00078 Mean Expected Number 0.000 +strand -167 : -156 CCACCAACCCCt AC RSP01008 Mean Expected Number 0.007 -strand -50 : -56 ACCTAAC AC RSP01454 Mean Expected Number 0.006 +strand -165 : -159 ACCAACC Totally 3 motifs of 3 different REs have been found Description of REs found 77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MYB52 |LOCUS: AT1G17950 |PROD: myb family transcription factor (MYB52) |6177610..6179282 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.35 C - 0.22 1 aaataaaaaa gggtagatta cttaaaagga gtgtgtttgg ttagggaaga 51 cgttggcatc aatcgccggt gaaaacctct ctccaaactt tccctcactc 101 tctaacgaat cttattatat tcattacttT CAATtcttta tataatatct 151 aaataaatat acttaTATAA ATAcatgtat gtatggtgct gttgctcttc 201 AGCTTTCTTC TTGTTCCTAC ATACCCATCT TCCCTCACCT ACATCAAACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.009 +strand -40 : -29 AcTTATATAAAT AC RSP00157 Mean Expected Number 0.009 -strand -29 : -40 ATTTATATAAgT AC RSP00259 Mean Expected Number 0.007 +strand -163 : -157 TGGTTAG AC RSP00593 Mean Expected Number 0.003 +strand -94 : -86 GAATCTTAT AC RSP00999 Mean Expected Number 0.009 +strand -106 : -96 TCACTcTCTAA Totally 5 motifs of 4 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G18280 |PROD: the same as GENE |6294333..6295356 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.28 C - 0.18 1 aaattggcaa ctcctgtaat aataaatgta acgattttct aattaatcca 51 gagcttagtc ttcgtttcca atgcataatg ataggatcag aaactgatta 101 tctcgaaaaa tcaggctggt gagctggatt aaattcaaaa accaaaaatt 151 ataaccacct tgtgtacata TATAAACCac acgcatgttt tacaactttc 201 ACATCTTCAC AACCAACTAA AGATAGAAAG AACATAATAC AAAGAGATAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.008 -strand -78 : -83 CTCACC AC RSP00681 Mean Expected Number 0.007 +strand -161 : -153 TAATTAATC AC RSP01221 Mean Expected Number 0.005 +strand -49 : -42 TAACCACC Totally 3 motifs of 3 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L6 (RPL6A) |LOCUS: AT1G18540 |PROD: the same as GENE |complement(6377314..6378571) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 atttttatca aaaaaacact tttacttacc tgccaaatag taagtacaaa 51 aatacttcat ttaaagccca atattttgca ataacacact tttgcactag 101 acccccatat gaagcccata ttaaagtatt ctagaccata agggcccatt 151 aggtttttac tttctgctaT ATAAAAGctc aatctagggt ttatgtctct 201 GATAGATTTT ACACCACCGA AGCCGAAAAA ATGCCGGCGG CGAAGAGGAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 -strand -36 : -47 AgAAAGTAAAAA AC RSP00438 Mean Expected Number 0.005 +strand +36 : +41 GGCGGC AC RSP00750 Mean Expected Number 0.005 -strand -117 : -128 TTATTGcAAAAT AC RSP00807 Mean Expected Number 0.005 -strand +41 : +36 GCCGCC AC RSP00961 Mean Expected Number 0.004 -strand -105 : -112 TGCAAAAG AC RSP01621 Mean Expected Number 0.008 +strand -116 : -107 cACACTTTTG AC RSP01640 Mean Expected Number 0.005 +strand -10 : -1 tTATGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G18660 |PROD: the same as GENE |6421109..6425872 |SUPPORT | 18 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +316 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.31 C - 0.10 1 ttttttttaa tttagccaaa aactaaactg aaaagtacat atgaatattt 51 gcttactttt tttctattag aaaaattgaa gtaaatatat aaacaaaagt 101 gaaaatgcca cctggtaagt aagattaaga atatacattt tactaaaaat 151 taagaagttg ttaaatgtaa AATAAATAta gcgaagaatt ctggtgagct 201 GAATTTGTGT GTTCCGACCG AAAAATCAGG AAGAAGAAGA AGAAGATTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00109 Mean Expected Number 0.005 +strand -92 : -87 CACCTG AC RSP00158 Mean Expected Number 0.009 +strand -155 : -145 TATTTGCTTAc AC RSP00187 Mean Expected Number 0.009 +strand -93 : -89 CCACC AC RSP00878 Mean Expected Number 0.000 -strand -86 : -93 CCAGGTGG Totally 4 motifs of 4 different REs have been found Description of REs found 107. Group RE: E-site /AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: E-site /TF: unknown ||Identical REs AC: RSP00309 RSP01147 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myb family transcription factor |LOCUS: AT1G19000 |PROD: the same as GENE |complement(6560783..6562777) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.23 C - 0.18 1 ccaaagaaaa taactcatta attaataaat ccaaatggaa gaaatgataa 51 atatagagag acaagcaggt cacagaggaa acgagtgacg aacaaatcat 101 aaataaacac gtgtcatgtt atcgtaataa cacacaacag agtaagtaat 151 gccacgtggc ttatcgagtt ttTATAAAGA caagacagaa gaagtagctc 201 AGATCCACTC ACACCTCGTC TCCTAATCTG TACGGTTCTT ATTTCGAAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.007 +strand -42 : -36 GCTTATC AC RSP00063 Mean Expected Number 0.001 +strand -50 : -41 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -41 : -50 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -50 : -41 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -41 : -50 GCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -49 : -40 CCACGTGGCt AC RSP00153 Mean Expected Number 0.001 -strand -42 : -51 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -48 : -41 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -43 : -50 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -50 : -41 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -41 : -50 GcCACGTGGC AC RSP00524 Mean Expected Number 0.006 -strand -87 : -93 ACACGTG AC RSP00682 Mean Expected Number 0.001 +strand -50 : -41 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -41 : -50 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -49 : -42 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -42 : -49 CCACGTGG AC RSP01034 Mean Expected Number 0.004 +strand -47 : -41 ACGTGGC AC RSP01034 Mean Expected Number 0.005 -strand -44 : -50 ACGTGGC AC RSP01035 Mean Expected Number 0.006 +strand -92 : -86 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -94 : -87 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -87 : -94 ACACGTGT AC RSP01726 Mean Expected Number 0.000 +strand -51 : -40 TGCCACGTGGcT Totally 22 motifs of 13 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl transferase family 8 protein |LOCUS: AT1G19300 |PROD: the same as GENE |complement(6671128..6672644) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.35 C - 0.17 1 tacaataaat tcccacattt ctgcattcga taaaacaaca catttaagtc 51 gaaaaattca gtaaataatt tgaccatttt tttgttacct gacgcaataa 101 tatgattttc agttttcaag atttaaattt aaaaatcatg aaaagggctt 151 ggaatctaat caataTATAA ATAtttttta atgagagaaa cccaaaatct 201 AAGCAAAACC ATTTTTTTAA TTTTCCTCTC TCTTACACAC ACACATGATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.005 -strand -55 : -61 CCTTTTC AC RSP00863 Mean Expected Number 0.001 -strand +31 : +23 AGAGAGGAA AC RSP01093 Mean Expected Number 0.003 +strand -3 : +8 TCTAAGCAAAa Totally 3 motifs of 3 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19530 |PROD: the same as GENE |6763906..6764944 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.29 C - 0.15 1 ctattaccgg agttttccaa agccaaatca tgggatttag ttttctcaag 51 ttatacgaac ttggaccgaa tagccaagta aatatataat attaataaac 101 taaacacaaa tttaatatct ttgggggata agaattatct agatgacttg 151 catactttgc atggagcacT ATATATAgaa gaatgttaac acatgatcct 201 ACCGACATTA ATGTTTACTA ATCAGAAAAT CAAAAGGACA ATTGGAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.010 -strand -38 : -44 CATGCAA AC RSP00301 Mean Expected Number 0.009 -strand -40 : -46 TGCAAAG AC RSP00892 Mean Expected Number 0.005 +strand -89 : -81 TTAATATCT AC RSP01009 Mean Expected Number 0.001 +strand -1 : +8 TACCGACAT AC RSP01010 Mean Expected Number 0.001 +strand -1 : +8 TACCGACAT AC RSP01639 Mean Expected Number 0.002 -strand +43 : +34 AATTGTCCTT Totally 6 motifs of 6 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 934. Group TF: DREB1A; DREB2A /AC: RSP01009//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB1A/DREB2A BS /TF: DREB1A; DREB2A ||Identical REs AC: RSP01610 RSP01763 RSP01771 RSP01779 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATCLH1 |LOCUS: AT1G19670 |PROD: |complement(6803602..6804965) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.31 C - 0.19 1 caactaactt gtaataattt gaatcaacac atgctctttt gtttacgcag 51 cccatgcatt tatcgttttc gaaagtattt aattcatttt gttataacta 101 cgatgagaag ccgagagaac cacagaatta taatgaatcg gataagaaaa 151 atcaacattc tcccccTATA AATAcaaaac aactagctaa agttcgaagg 201 ATTCATACAT AAATCTTCAA CACAACTCTT TAATTATCTA GTTTAATACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.007 -strand -139 : -146 TAAATGCA AC RSP01301 Mean Expected Number 0.002 +strand -35 : -26 CTATAAATAC AC RSP01776 Mean Expected Number 0.007 -strand +37 : +27 AtAATTAAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G20100 |PROD: the same as GENE |complement(6969098..6970947) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +257 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.31 C - 0.22 1 aaggataaaa agggtatttc agatgacgta gcaaactcgg accgagcttc 51 acggagatga taacgactaa ttgacggaat agcccttaca aattagggtt 101 ttcacattat tctttccaaa aacgtaagta tagcccgagt cggcggatct 151 gagtgtttca cgcgtcTTTA AATAgaacct tacccttcac cattattttc 201 TCAACCGCAA TTGGTTTTTT TCTTCTTTCT CTCTCTCTCA TCGATTAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -108 : -100 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -100 : -108 AAACCCTAA AC RSP00864 Mean Expected Number 0.002 -strand +38 : +30 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +36 : +28 AGAGAGAGA AC RSP01201 Mean Expected Number 0.003 -strand -150 : -157 TGAAGCTC AC RSP01283 Mean Expected Number 0.000 -strand +39 : +23 GAGAGAGAGAGAaAGAA AC RSP01303 Mean Expected Number 0.003 -strand -99 : -108 aAAACCCTAA Totally 7 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G21010 |PROD: the same as GENE |7346145..7346957 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.29 C - 0.27 1 gaaggtttaa ctaaggaaac attatatatg tccttttact atgcgtgaca 51 aaaatctact aatggacaga caacaaacaa aaactacatg ttaacaaccg 101 gttcaaaaca ttaaaccgta accggttatc taattTCAAT ttaatcaccc 151 ggttttatca cccgtcttcT ATATATAacc ccaccatgac cgactctctc 201 GACGCGTCGT ATCAACATTC GTGAATCTTC TCCACTCCCT CTCTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.004 -strand -18 : -29 TGgGGTTATATA AC RSP00864 Mean Expected Number 0.003 -strand +50 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +48 : +40 AGAGAGAGA AC RSP00888 Mean Expected Number 0.006 +strand -151 : -143 AAAAATCTA Totally 4 motifs of 3 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: O-methyltransferase, putative |LOCUS: AT1G21130 |PROD: the same as GENE |complement(7399051..7400593) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.26 C - 0.21 1 cttaaatatc gtctttactt caaacagaat tttagcagcc acctcttact 51 tttctacggt acattacata gagactattc agcaaccaag ctggaccggc 101 aacgctagcc ACAATgattt atgtgaaaat tttataaaga aaaggaagaa 151 atatctaagc tttagcTATA AAAGgagaaa caaggatata catcaaaaac 201 ATACTAAATC ATCAACACTA CAAAGAAGAA ACACACTATC TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00132 Mean Expected Number 0.001 +strand -163 : -156 GCCACCTC AC RSP00864 Mean Expected Number 0.001 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +47 : +39 AGAGAGAGA AC RSP00940 Mean Expected Number 0.002 +strand -149 : -140 TTCTACGGTa Totally 5 motifs of 3 different REs have been found Description of REs found 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: nodulin MtN3 family protein |LOCUS: AT1G21460 |PROD: the same as GENE |complement(7511850..7513347) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.37 C - 0.17 1 cataactttt ttttcaaatt ttattcatac tacaaaaatt aataacagaa 51 ccatgtattt ttaaaattta atatttaata ccattatttc ataatttatt 101 atacttttat taattttgta attATTGGtg ttccacagtg aagcggttaa 151 cacacgctga atctcgaTAT ATATAcgctt gccgatagaa aacacttagc 201 TCATATTCTC TCACTTTCTC TCTCAGCTTA CGAACAAGAA AAAAAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.009 +strand -158 : -151 TAACAGAA AC RSP00749 Mean Expected Number 0.008 +strand -88 : -77 ATTTTGTAATTA Totally 2 motifs of 2 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: OGG1 |LOCUS: AT1G21710 |PROD: 8-oxoguanine-DNA glycosylase (OGG1) |7624385..7626105 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.34 C - 0.16 1 tcgacaaaca agagggttct gatttcgaaa ttcaagcttc gttgaccaat 51 ccaaattttg gtttaacttc ggttaaagtc aactttactt cggttttatt 101 ttTCAATttt gaatgagaaa aaccgaatca attatttagt tcggttctta 151 aagttcaaat tggttaaacc ggTTTAAATT gatacattag tcgaccgtcg 201 CGCATTAATA CTGGTGTGGT GGTTCCGTTA ACGAGCAACG GCGATGAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.007 +strand -172 : -165 AATTCAAG AC RSP00918 Mean Expected Number 0.004 -strand -118 : -127 GTTGACTTTA Totally 2 motifs of 2 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G21910 |PROD: the same as GENE |7696525..7697688 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.06 T - 0.27 C - 0.27 1 gctaggataa aggaaaaatt agaagaaaaa cacctgtcat gcaccacaat 51 gtcacattca tacacaagaa accatactat atttcatttg accctatttt 101 agatttataT CAATaaataa tatttcatct cttcctctcc catacccctc 151 ccaaatcaat ccatctcTAT ATATAatctt ctcagctcac actaatcctc 201 ATCAAAAAAT CTCTATCCAT CCACAACAAC AACAAAAACT CAAGAACAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.004 -strand -162 : -169 TGACAGGT AC RSP00383 Mean Expected Number 0.009 -strand -108 : -114 GGTCAAA AC RSP01015 Mean Expected Number 0.005 -strand -111 : -120 CAAATGAAAt AC RSP01237 Mean Expected Number 0.002 +strand -36 : -27 CTCTATATAT Totally 4 motifs of 4 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G21920 |PROD: the same as GENE |complement(7704244..7706129) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +274 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.22 G - 0.09 T - 0.38 C - 0.31 1 taaaaaaccg ttcatgtttg gatccgtcga ccaatatatt cccgtcatca 51 ccggtgaccc ctctcttcct ctccatccaa cggctctcct tcttctcttc 101 acttaatcaa ccgtcagatt ttaatccaac ggtctttatt aaatctaatt 151 ttatctcttt ctctcTTTAA ATTaaaccca aacccggtct aatttctctt 201 CTCCTATTTC TCTCTTCTCT CTCTCTTTAA GTGAGCTTCG CCGTTAAACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.000 -strand -66 : -74 AGACCGTTG AC RSP00263 Mean Expected Number 0.001 +strand -127 : -119 CATCCAACG AC RSP01231 Mean Expected Number 0.009 -strand -69 : -74 CCGTTG AC RSP01231 Mean Expected Number 0.009 -strand -118 : -123 CCGTTG AC RSP01497 Mean Expected Number 0.001 -strand -117 : -126 GCCGTtGGAT Totally 5 motifs of 4 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB2204 |LOCUS: AT1G22090 |PROD: expressed protein |7795697..7797414 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +13 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.21 C - 0.21 1 tcagtaaatg taaaagccct tacctaaagc gatggcgttt taagggtacg 51 gtgaaaaaac aataaaaatt gaacatgtgc gttgcaacat cgtcaagatt 101 gACAATtgaa gtcccaaatg aagcccatga atgaaacctt cgccgccttc 151 gccagacaaa acctaaaacT ATAAAAGcag cagtcgctaa tttttggaag 201 GAGAAGGAGA AAGATGAGTC GCCGGGTGGA ATACACGTTA GCTCCTCCGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00018 Mean Expected Number 0.008 +strand -11 : -5 ATTTTTG AC RSP00029 Mean Expected Number 0.009 +strand -192 : -185 TGTAAAAG AC RSP01115 Mean Expected Number 0.008 -strand -5 : -11 CAAAAAT Totally 3 motifs of 3 different REs have been found Description of REs found 17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AP2 domain-containing transcription factor |LOCUS: AT1G22810 |PROD: the same as GENE |complement(8074040..8075026) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.39 C - 0.20 1 gtcaggcaca tgtcaaattg gtaccactaa aaaaatgggt catactttga 51 ccagttgatt ttttcctcga gaattaacta gttttataat tggtcaactt 101 cattctcatt cttgattcat attaaaaaat attatataat attttgactt 151 tcactaaact tcaacgTATA AATAgtcttt gtatcttcat attcaaacat 201 AAACAACACT CAAAAGTCTC TTCTTCTTCT TCTTCTTCTT CACATCGATC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G23205 |PROD: the same as GENE |complement(8233986..8234882) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.29 C - 0.20 1 aaaaacgtct gatacaattt ttttatgcca tgatattaac gagatctctt 51 aaatttgatt tcgccatacg tataaagcat tattatttat acacaatatt 101 caggcccaga tcggcccatt aaaATTGTtg gctgcttgga ttaatcctag 151 ctaatgatca acagTATAAA TAtaaacttg aggtcacaaa aaccaaaatc 201 ATCCATAACC CAAAAAGAGT CACTTCCGTG TCACAAGAAA CCATGAAACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 +strand +37 : +45 GAAACCATG AC RSP00850 Mean Expected Number 0.010 -strand -69 : -74 GCCAAC Totally 2 motifs of 2 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RPL27A |LOCUS: AT1G23290 |PROD: 60S ribosomal protein L27A (RPL27aB) |8262973..8263576 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.27 C - 0.20 1 agtgaagtgg ttaactaaac ctgatattag ggattcatat aatgggcctc 51 atagcccaat ttaataacat aaataacctg tggtataatt gggccaaatt 101 attaaaaagc ccaaaagACA ATacactatc tctgtttctc cgaaaaccct 151 agctgctaaa tcctctctaT ATAAAAAccc tttaagatca tttctggttc 201 AAAACCCTAG ATCTGATACT AAAATGGCGA CGGCGTTGAA GAAGAACAGA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: kelch repeat-containing F-box family protein |LOCUS: AT1G23390 |PROD: the same as GENE |complement(8309101..8310638) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.28 C - 0.19 1 gaatgcttaa gaataccatc caaatctaat ttagtcccaa tctcaagtta 51 ctaacaataa taattactgt atatgaatgt cacatattaa cctacaagaa 101 aataaaataa tattaattcc atgtGCAATa ataagagtcg atcaccaact 151 tcgctgtgtc actctctcta taTATAAAGA ctttccctcc tttagacttt 201 GTGCATTATC CAAAAAATGG AGAAGAAGAA GAACAACAAC AATGGAGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.005 +strand -58 : -49 CACCaACTTC AC RSP01013 Mean Expected Number 0.007 +strand +14 : +23 aAAATGGAGA AC RSP01162 Mean Expected Number 0.001 +strand -28 : -16 TATAAAGAcTTTC AC RSP01237 Mean Expected Number 0.001 +strand -35 : -26 CTCTATATAT Totally 4 motifs of 4 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ubiquitin extension protein |LOCUS: AT1G23410 |PROD: the same as GENE |8314913..8315520 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.31 C - 0.20 1 gatgctacaa tcgccattga tactcagaga agaagaagat gagagtttta 51 gtagttttca aactttatcc tgtagacgac atcgtttaat cattacgggc 101 tttacttatt aaATTGGgcc ctaaggccag gcccataatc tatggacttg 151 taaccctaat ttccttgaTA TAAAAGctat tgttttcact ctctgcgttt 201 TTTCTCAAAC AAGAAAATGC AGATCTTCGT GAAAACCCTA ACGGGGAAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +41 : +33 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +33 : +41 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -71 : +40 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand +32 : +41 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G23710 |PROD: the same as GENE |8385240..8386415 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.29 C - 0.23 1 aggcgacaat cacagaagca gcccacccac tatttcctca gcccatcacg 51 cgcttttact tgtaaagtta ataacaacaa aaagagaagt gatgtgattg 101 gcCCAATtaa aataaaataa aacgtactgt tcacacttga tgacttatct 151 tcatgaagca ccaaccaTAT AAATTtggtc aggtctttat taaacaaatc 201 AAATTATCTT CCTCACTCGT TGTTTCATTT CTTAGAGCCG TCGTTTCAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.006 -strand -100 : -106 CCAATCA AC RSP00442 Mean Expected Number 0.007 -strand -131 : -140 TAACTTTaCA AC RSP00495 Mean Expected Number 0.005 +strand -140 : -133 TGTAAAGT Totally 3 motifs of 3 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: Bet v I allergen family protein |LOCUS: AT1G24020 |PROD: the same as GENE |complement(8500466..8501504) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.33 C - 0.14 1 tattgattca tccacctctt tgagtgggtg agatagcaat gaagaatggc 51 aaatgtataa gctttaggtt aattttaaaa aggacccata ggatgaaaaa 101 ttagttggat gagttgctcc acatagttaa tGCAATttat catatcacta 151 aaggctttaa aacctctcTA TATATAgaca cgttcattga caagttatac 201 AAACAAATCA TTCAAAGACA TACAAAATAA TTGAGTTTTT TTTTTAATTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.002 -strand -15 : -24 TgAACGTGTC AC RSP01035 Mean Expected Number 0.005 -strand -18 : -24 ACGTGTC AC RSP01237 Mean Expected Number 0.001 +strand -35 : -26 CTCTATATAT Totally 3 motifs of 3 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: BCP1 |LOCUS: AT1G24520 |PROD: anther-specific protein agp1 |8688617..8689251 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.34 C - 0.20 1 ttgaacgaat ggtttcatat tcattcgcat gttcaccaat caaaatctat 51 atctgaacaa gtccattttt aggtactcca gtagatttac attggattgt 101 aaggtaatcc tacatcttag ttcaaacgtt ttctatttta tttttggtct 151 tgatcacaaa acacaacTAT ATATAcatat caaactcatc ttcggaaatc 201 ATCACAATCA ATAAACCTCA AACCCTAAAA TAAATTAAAC GAGTTCTACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +28 : +20 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +20 : +28 AAACCCTAA AC RSP01103 Mean Expected Number 0.010 +strand +13 : +20 AAACCTCA AC RSP01303 Mean Expected Number 0.008 +strand +19 : +28 cAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G24575 |PROD: the same as GENE |complement(8711023..8711515) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.26 C - 0.20 1 tccttaccta tatcattagt ccaaatctct agacatgtgc atagaatata 51 ttaaaatcgg ccaaacctga agtagtagta tatttgctcg gaaaagacat 101 aaagaaaaca gggaatcaga ttcacgccca tctttcatgt ggactacaac 151 ctcataacat gtagtattaT ATAAAGAtac ctacgatagt tttcaaaaat 201 ATCCCTAATA AAACAACACT CCGATCCAAA CAAGAAAGAG CTAGTTTAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.003 +strand -8 : +4 TCAAAAATATcC AC RSP01015 Mean Expected Number 0.004 -strand -60 : -69 CAcATGAAAG AC RSP01711 Mean Expected Number 0.007 +strand +41 : +50 CTAGTTTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G24600 |PROD: the same as GENE |8720295..8720707 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.29 C - 0.23 1 tagataacat caccattaca aattcgtctt aattatcgta tatatattat 51 tgacacacaa agagagagat atgtgtaaga gactaatttg gcgttgccca 101 ccaacctaac ttcccttcta cttcatcaac aactcgtgtc cactttctca 151 tactaacctt ggttcaagat TATAATTAta aacacgcctc ccgcgtgaat 201 AGACAACGCA AACATCATAA AAACATCATA AGAAGAAGAA CTCTTTGGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.009 +strand -104 : -95 CCCACCaACC AC RSP00864 Mean Expected Number 0.000 +strand -140 : -132 AGAGAGAGA AC RSP01150 Mean Expected Number 0.008 -strand -24 : -34 AATTATAATCt Totally 3 motifs of 3 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G25275 |PROD: the same as GENE |8860659..8861349 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.18 T - 0.20 C - 0.14 1 taatattagt cacaaaaaaa aaaattatta gtccaccgtc gaaggaaaaa 51 aacaaaaagc agtagacaat tcttgaagta aaattaaagg gatagacaga 101 taacgtttac gagaggaatc atgacacgtg aacatggagt atcggtcaaa 151 cctggcaact gggacatttc TTTAAATAcc cacaaaatat cacttttgaa 201 GAAGTAGGAA AAAACAAAAC CAAAGAAGAT CTAAAGAGAT AAAGAGAATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.005 -strand -69 : -78 TtCACGTGTC AC RSP00524 Mean Expected Number 0.008 +strand -77 : -71 ACACGTG AC RSP00716 Mean Expected Number 0.008 +strand +15 : +23 CAAAACCAA AC RSP00838 Mean Expected Number 0.005 +strand -165 : -160 CCGTCG AC RSP00940 Mean Expected Number 0.009 -strand -158 : -167 TTCgACGGTG AC RSP01035 Mean Expected Number 0.008 -strand -72 : -78 ACGTGTC Totally 6 motifs of 6 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT1G25330 |PROD: the same as GENE |complement(8879863..8882085) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.28 C - 0.22 1 aatctactgc acagtgataa atggaaacct agctacgagt gtctctttgg 51 tctcacacgc ttctttctca ttctcaccaa aagtcacaca atacatgagc 101 aaataaccaa atcatttaaa aacttaactt attaaatatt tcaccccatc 151 ttagacattt ctatctaTAT AAACAatcac aactcaattg caagttttat 201 AACTGTCTTA GAGAAAGAAA AAAAACAAAA CTAGCTCACA AAAAGGAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.004 +strand +12 : +20 AGAAAGAAA AC RSP01458 Mean Expected Number 0.005 +strand -87 : -75 ATTTAAAAAcTTA Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G25370 |PROD: the same as GENE |complement(8897744..8899089) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.24 C - 0.23 1 agactaaagc aatccaacgg ctattgattc accgacttac ttgaaaatgg 51 aaaatgttaa tgaacccggg aaaatgtaaa ccccaaacac atgcgcattt 101 tagctaccat ctaatgaaat taccgaactt accctccgat gcaacattaa 151 tttcctaaaa aatttctggT ATATATAcac gaagctttgt atatcacagc 201 AAAAAACGCA CAACGAGAAA ATAAAAAACG CACCGCCGGT AACAATTTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.000 -strand -24 : -35 TATAtATACCAG AC RSP00566 Mean Expected Number 0.007 +strand -16 : -7 CtTTGTATAT AC RSP01046 Mean Expected Number 0.004 +strand -191 : -183 CAATCCAAC AC RSP01497 Mean Expected Number 0.003 -strand -180 : -189 GCCGTtGGAT Totally 4 motifs of 4 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CAL |LOCUS: AT1G26310 |PROD: MADS-box protein, putative |complement(9100145..9103590) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.30 C - 0.22 1 ttattgaaaa ttatatacga gaaaacatag actcgacatt aggcaatgga 51 agtctaatca gaccaatgag aagtcgacaa cacatcctag aaaccaactc 101 tggtttattt ccttccCCAA Taccaagtta tagctttctt tcaaaccgct 151 atttccaaaa tatctcttcT TTAAATAaag agtgaaagaa gcactctttc 201 ACATTACCAT CATTAGAAAA CTTTCCTAAT TAGATCAAGA TCGTCGTTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.005 +strand +4 : +19 TTACCATcATTAGAAA AC RSP00085 Mean Expected Number 0.005 -strand +19 : +4 TTTCTAATgATGGTAA Totally 2 motifs of 1 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl hydrolase family 1 protein |LOCUS: AT1G26560 |PROD: the same as GENE |9178365..9181821 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.22 G - 0.10 T - 0.47 C - 0.20 1 aattgaattt acttttcata tttgtttttg tctagcttca tgtatgcatc 51 tcaatattaa caacagtggt tatcatatta ttatttcttt tgtctaaaaa 101 aacaaaaaat ttgtcacttt tttctttggc tcggatcaga agattttagg 151 tctctctttc ctttccTATA TATAgtagta ccccttacat agctttttcc 201 ACTTGCACTC CTCTTTTTCT TTCTTTCTTT CTTGTTGGTC TCTCTTACTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.005 -strand +33 : +20 AAGAAAGAAAGAAA AC RSP00444 Mean Expected Number 0.005 -strand +29 : +16 AAGAAAGAAAGAAA AC RSP00842 Mean Expected Number 0.001 +strand -71 : -64 CTCGGATC Totally 3 motifs of 2 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: UDP-glucose 6-dehydrogenase, putative |LOCUS: AT1G26570 |PROD: the same as GENE |9182191..9184380 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +597 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.31 C - 0.16 1 atcccaaaaa ggtccaaatt aatctcttca taatctttag ctagtaaatt 51 ttgtaacgaa atgattatgg aagcataata attgaaccaa aaagaaaaaa 101 aagcgtgtgg gatttATTGG gagcaataaa taaaaagttg aaatgtgtaa 151 gtcaagtggg tgcgagtgta ttTATAAAAC tttcagaaga catcttctct 201 GCAAATTCCA TCATCGTCGC CGCAACAATA TCTTTTGCTT TCTCTCTCAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.007 -strand -42 : -48 CCACTTG AC RSP00653 Mean Expected Number 0.001 +strand +40 : +50 TTCTCTCTCaT AC RSP00654 Mean Expected Number 0.003 -strand -39 : -48 CACCCACTTg AC RSP00953 Mean Expected Number 0.007 -strand -117 : -125 CAATTATTA AC RSP01033 Mean Expected Number 0.007 -strand -189 : -198 CCTTTTTGGG AC RSP01214 Mean Expected Number 0.003 -strand -189 : -198 CCTTTTTGGG Totally 6 motifs of 6 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATEXPA10 |LOCUS: AT1G26770 |PROD: expansin, putative (EXP10) |9259592..9261300 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.33 C - 0.20 1 ctcatttaat aaacaacaaa aatgtttgtt gaaaaaaaaa aagtttttat 51 ttatcttgac cttatttctt tgaagaaaat aaagcttggt tattaaagaa 101 gtccaagtta gttgccacca tcagtggcat aacggtaaat taaagccaac 151 ttcctctaac taaagttttc TATAAATTca accactcacc tcccactcta 201 AAACCCAACA ACATAATTTC ACATATCTCT CTTTCTTTCT CTTGAAGGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.009 -strand -171 : -177 AACAAAC AC RSP00840 Mean Expected Number 0.006 -strand -73 : -78 GCCACT AC RSP00860 Mean Expected Number 0.004 -strand +40 : +32 AGAAAGAAA AC RSP00861 Mean Expected Number 0.002 -strand +36 : +28 AGAAAGAGA AC RSP00960 Mean Expected Number 0.001 -strand -87 : -94 CAACTAAC Totally 5 motifs of 5 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 785. Group RE: CAT /AC: RSP00840//OS: Arabidopsis thaliana /GENE: H4A748/RE: CAT /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: self-incompatibility protein-related |LOCUS: AT1G26795 |PROD: the same as GENE |9276368..9276941 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.37 C - 0.14 1 taaatttgac catttttgtt gccaaagaat aatgatatag aaaccattaa 51 atatatattt tatttagtat gcttgtaatt gtattttacg ttacaaacta 101 aagatttata cgtatatccc agaagataat ttgcattaaa aataataaca 151 catttaatgt attttcatcT ATAAATTctt gcttctgaaa cagaacaaat 201 ATTATTATCT CACAAATTCT TAAAAGTAAA ACACACTCAT GGCTTTCTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.001 +strand -81 : -73 CAGAAGATA AC RSP00383 Mean Expected Number 0.009 -strand -190 : -196 GGTCAAA AC RSP01086 Mean Expected Number 0.007 +strand -116 : -107 TTTACGTTaC AC RSP01195 Mean Expected Number 0.003 -strand +3 : -10 AATATTTgTTCTG AC RSP01233 Mean Expected Number 0.009 -strand -18 : -24 AGCAAGA Totally 5 motifs of 5 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, Location of EST 228A16T7A |LOCUS: AT1G26920 |PROD: the same as GENE |9329499..9330385 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.07 T - 0.38 C - 0.21 1 gatttctttc cgtgtaatgc gataatttga ataaagcatt cacatgtttc 51 ttcctcctga catgcacgaa gcaatttaaa ataatactaa atcacattat 101 tattttaata ctatACAATa taaatagcta ttttgaccaa ataatctctc 151 tatataaTAT ATATAtatat atatatatac atttcactct ctatgactct 201 ATCTCGCTTA TCACCCTCAC AATTTCTCTC TCTAACGTTT CTAAAACATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.007 +strand -140 : -134 CATGCAC AC RSP00802 Mean Expected Number 0.000 -strand -33 : -52 ATATATATATATTATATAga AC RSP00864 Mean Expected Number 0.004 -strand +33 : +25 AGAGAGAGA AC RSP01016 Mean Expected Number 0.010 -strand -150 : -157 AGAAACAT AC RSP01469 Mean Expected Number 0.006 +strand -161 : -152 TCACATGTtT AC RSP01470 Mean Expected Number 0.005 -strand -132 : -141 TCgTGCATGT Totally 6 motifs of 6 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 755. Group TF: BABF /AC: RSP00802//OS: Solanum tuberosum /GENE: patatin 21/RE: Box A-1 /TF: BABF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: U2 snRNP auxiliary factor small subunit, putative |LOCUS: AT1G27650 |PROD: the same as GENE |9614562..9616344 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +577 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.31 C - 0.25 1 tcatcatatg atcaagctta taccgatcgg ataagtaatt aaccggttca 51 attaactaca cctagcttat accgatcgta taaaccggtc aagaaccaaa 101 accgcttggt ttccattcta gaccaaaccg gattctagtt tccattatta 151 ttatcttttt tatcggatta aaaaTATAAA TCcttatgtc aggagatccc 201 ATTCTCTGTC TCTCTGTCTT TCTCCCCCAA CTCGCGAACA AAGCAAACCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.004 +strand +37 : +46 AACAAAGCAA AC RSP00751 Mean Expected Number 0.001 -strand -32 : -43 AAtCCGATAAAA AC RSP01463 Mean Expected Number 0.002 -strand -20 : -32 ATTTATATtTTTA AC RSP01640 Mean Expected Number 0.007 +strand +4 : +13 CTcTGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT1G27740 |PROD: the same as GENE |9654675..9656068 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.31 C - 0.22 1 atcgtgttca tcatcatgca tggcttcgtt tcacttattt aattaacgac 51 ttgttcacga cacaaatgat tgtaccagtt taagaatctc ttgatctctc 101 ttcatcatca ccaaatcttc cttgagaaat attctctcca tcatcaagtg 151 tctccaaccT ATATATAtat atatatagtt gcacaagttc aagaattatc 201 ATAACAACAA ACTAACAAAC AACAACAACA ACAACAAGAA AGGCAAGAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.002 +strand -186 : -179 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -179 : -186 CATGCATG AC RSP01076 Mean Expected Number 0.001 +strand -186 : -177 CATGCaTGGC AC RSP01237 Mean Expected Number 0.010 -strand -23 : -32 CTaTATATAT AC RSP01470 Mean Expected Number 0.006 +strand -187 : -178 TCATGCATGg AC RSP01642 Mean Expected Number 0.006 +strand -55 : -46 AAgTGTCTCC Totally 6 motifs of 5 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: lipid transfer protein-related |LOCUS: AT1G27950 |PROD: the same as GENE |9740691..9742146 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.26 C - 0.21 1 tgatgtttga tttcattcac tatcccgtca ataaaatcac acgcaaacaa 51 aagtaaggtc aacacttata tcagcatcgt taatgttaat atgtataggt 101 gtctaagctc ccaactacac accacATTGC atttaatacg cacaacacac 151 acacctcaaa gtcattttgc tTTTAAATAc aaacaagatc ttcaacaagc 201 AAAAGAGTAA TTGAACAAAA GAAAGAAAAA CTGATAATGA AGGGTCTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.005 -strand -66 : -73 TAAATGCA AC RSP00860 Mean Expected Number 0.007 +strand +20 : +28 AGAAAGAAA AC RSP00918 Mean Expected Number 0.009 -strand -138 : -147 GTTGACCTTA Totally 3 motifs of 3 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATERF11/ERF11 |LOCUS: AT1G28370 |PROD: ERF domain protein 11 (ERF11) |complement(9955955..9956926) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.31 C - 0.23 1 aaatagataa aatgtctttt agtaataaga aaaaaaaaaa aaaaaaagct 51 tcttcactct cactttcctc tttcgtggag acaaaaaaaa gaagccacgt 101 aatatggatt taattaccaa aactgccact cggccgcccc tttgttgact 151 tatatttgtc gtctcctcct TATAAATGat gtcctcacaa acttcttcac 201 ATAACAAACT CATCAAACTT CCTCAGCGTT TCTTTTTCTT ACATAAACAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand -100 : -107 TACGTGGC AC RSP00063 Mean Expected Number 0.000 -strand -67 : -76 GCCGaGTGGC AC RSP00064 Mean Expected Number 0.003 -strand -98 : -107 AtTACGTGGC AC RSP00247 Mean Expected Number 0.002 +strand -107 : -98 GCCACGTAAt AC RSP00438 Mean Expected Number 0.007 -strand -63 : -68 GGCGGC AC RSP00807 Mean Expected Number 0.007 +strand -68 : -63 GCCGCC AC RSP01034 Mean Expected Number 0.003 -strand -101 : -107 ACGTGGC Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transferase family protein |LOCUS: AT1G28680 |PROD: the same as GENE |10078175..10080015 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.31 C - 0.16 1 cagtgaagac aagtatgaag tatggtatga ataacaaaaa gactaaaatg 51 attttgtttg aaactgttgt aggtgagaaa tttggacatg ggacttgacc 101 gtttggtagt tggtgaagcc tactctcgtg agctgtgtcc cctcaaggca 151 ttgattttgc ttctctTATA AATAtggacc ccaaaactta ttttggaagt 201 AACAAAGACC CATACCATTC TTATTATTAA GGTATGGCGA CACTTGAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.006 -strand -188 : -197 CTTGTCtTCA AC RSP00286 Mean Expected Number 0.002 -strand -123 : -133 TCTCACCTACa AC RSP01032 Mean Expected Number 0.009 -strand -5 : -14 CCAAAATAAG AC RSP01184 Mean Expected Number 0.002 -strand -123 : -134 TCTCACCTACaA AC RSP01209 Mean Expected Number 0.007 +strand -14 : -5 CTTATTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin-responsive protein, putative |LOCUS: AT1G29450 |PROD: the same as GENE |complement(10305937..10306485) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.33 C - 0.20 1 attcatactc acatggtcat gtcttctcag ttctcaccat gtatgtttta 51 atccacaagt tgatttgaaa taagattgat tgctaacttg ggacccttat 101 gatcactaac aagaaacctg gcatgtgttt ctgtctggct tggttgctct 151 aaaacaataa tagtttctcc tTATATATAa tgaaacaagc ctgtgggaat 201 CTTCACCAAT CATAACTTGC ATTCAAAGAG TTCTACAACA CAAGTTAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00996 Mean Expected Number 0.003 +strand -142 : -133 GTTGATTTGA AC RSP01191 Mean Expected Number 0.001 -strand -5 : -12 CCACAGGC AC RSP01597 Mean Expected Number 0.001 +strand -8 : +3 GTGGGaATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin-responsive protein, putative |LOCUS: AT1G29460 |PROD: the same as GENE |complement(10307493..10308129) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.38 C - 0.20 1 tcatgtttct tctcaccatg ttaatggttt ctaatccaca aattgattta 51 gcagatatga ttgattacta gtttgggacc tctttagaca agaactacaa 101 gagcatgtgt ttctgtcttc tttggttgct cttaattata tctaaaactc 151 taatactttc tctttataTA TAAAATgcaa caaagcttag agcattcttc 201 ATCATTCACC ACTTTCATTA CTTCAGAGAT TTATACTACA ACACAACTTA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin-responsive family protein |LOCUS: AT1G29490 |PROD: the same as GENE |10319730..10320388 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.33 C - 0.20 1 atcacgcctt ttccacagaa gtttcaatcc acaagttgat gagcagcatg 51 gttggttagt ggttactaac tttggaaccc tttttaatca catacaacaa 101 agacaaaagc atgtgttatg tctggtttag gtgctCCAAT tttatctaac 151 ttaaaatagt ttttcctTAT ATATAatgca acaagcctat tggattcttc 201 ATCAACCATA ACTTGCATTC AAAGAGTTAT ACAAGACAAC TTACAAGCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.009 +strand -148 : -142 TGGTTAG AC RSP01454 Mean Expected Number 0.004 -strand -145 : -151 ACCAACC Totally 2 motifs of 2 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT1G29670 |PROD: the same as GENE |10375753..10378144 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.35 C - 0.20 1 ttagttgtcg gcacatatac cttttaaatt atcgaatata aagccattga 51 taaatcttga ttctgatgtt gaatgagaaa aaactggtca cattatattg 101 gacccaCCAA Tcttaaagtg actaggccta caaaaattaa atctatcaaa 151 aacacaaatg tctctcTATA TATAgttaca caacttcttt ggacttcttc 201 ACATTCACTC ATATCACTAC ACTTTCCATT AATTACCAAT ATATTTTTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.003 -strand -189 : -194 GCCGAC AC RSP00874 Mean Expected Number 0.005 +strand -90 : -80 TCTTAAAGTGa AC RSP01237 Mean Expected Number 0.002 +strand -37 : -28 CTCTATATAT AC RSP01642 Mean Expected Number 0.006 +strand -45 : -36 AAATGTCTCt Totally 4 motifs of 4 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase |LOCUS: AT1G30110 |PROD: the same as GENE |10582076..10584052 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +608 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.31 C - 0.18 1 gtttgtctcg acattatatt atacacgtgg caactggatt tatgttaaaa 51 taagtcgtcg gtgggcccgg cccaatacaa acagttagaa taagatgcca 101 aatagtcaga gctgatatta cgaaacgtca tcgttctaga ccgaatccaa 151 ttctgTATAT ATAttaatgt aaaagattta tacgtgtgct ttgtgtttga 201 AAGAAAACAC ACACACACAC ACATGTTCTT CGTTGCTGCT TCGTTGGGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -178 : -170 ACACGTGGC AC RSP00029 Mean Expected Number 0.008 +strand -33 : -26 TGTAAAAG AC RSP00095 Mean Expected Number 0.000 +strand -140 : -132 GTGGGCCCG AC RSP00175 Mean Expected Number 0.001 +strand -177 : -170 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -179 : -170 tACACGTGGC AC RSP00524 Mean Expected Number 0.009 +strand -178 : -172 ACACGTG AC RSP00682 Mean Expected Number 0.002 -strand -170 : -179 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -179 : -170 TACACGTGGC AC RSP00868 Mean Expected Number 0.005 +strand -189 : -178 cATTATATTATA AC RSP00997 Mean Expected Number 0.003 -strand -69 : -78 GATGACGTTT AC RSP01034 Mean Expected Number 0.006 +strand -176 : -170 ACGTGGC AC RSP01134 Mean Expected Number 0.003 +strand -68 : -59 GTTCtAGACC AC RSP01237 Mean Expected Number 0.009 +strand -48 : -39 CTgTATATAT AC RSP01255 Mean Expected Number 0.002 +strand -178 : -171 ACACGTGG AC RSP01288 Mean Expected Number 0.005 +strand -21 : -14 ATACGTGT AC RSP01593 Mean Expected Number 0.000 +strand -179 : -168 TACACGTGGCAa AC RSP01654 Mean Expected Number 0.007 -strand -69 : -78 GATGACGTTT Totally 17 motifs of 17 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 93. Group TF: GCBP-2 /AC: RSP00095//OS: Zea mays /GENE: GapC4/RE: GCBP-2 BS /TF: GCBP-2 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G30130 |PROD: the same as GENE |10587587..10589730 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.29 C - 0.16 1 acacaacaca ataatatact gtcactgaag ataacaatgg cctctatgag 51 acaaattcta aattaatact aacttatagc attttaaaac ggcattatta 101 gattcaaaaa taataaaagt aaattactcg ttaaattaat acttatcgtt 151 aaacgtggca ttaaatCATA AATAtaccaa acctctgcat ttgaagggtc 201 ATCAATGTCA ATCTCTGATT TTTGAAAAAG ATCAGATAGA GATAGAGAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.009 -strand +23 : +16 AAAAATCA AC RSP00773 Mean Expected Number 0.005 -strand -33 : -42 TGATTTAATG AC RSP01013 Mean Expected Number 0.003 -strand -8 : -17 CAAATGcAGA AC RSP01014 Mean Expected Number 0.005 -strand -8 : -17 CAAATGcAGA AC RSP01034 Mean Expected Number 0.002 +strand -48 : -42 ACGTGGC Totally 5 motifs of 5 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: WRKY14 |LOCUS: AT1G30650 |PROD: WRKY family transcription factor |10868285..10871279 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +309 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.33 C - 0.18 1 aatcaagaaa ccaatattat attagaactt cacaaactca agtaaactca 51 aaaagataat ctaaactaaa aagtacaaag acttggccat cgattggatt 101 atctatagga ttaataaata gagtatctca cttactttaa cttatatttc 151 catccatact ttaaTATTAA TAtccgttga tattatactt actactgaaa 201 TCTCTCTCTC TCTCTCATAT CAACATGTAG AAGGGGAAGA AGATGTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00307 Mean Expected Number 0.010 -strand -114 : -119 GCCAAG AC RSP00864 Mean Expected Number 0.001 -strand +15 : +7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +13 : +5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +11 : +3 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +9 : +1 AGAGAGAGA AC RSP00996 Mean Expected Number 0.007 -strand +24 : +15 GTTGATATGA AC RSP01231 Mean Expected Number 0.010 +strand -27 : -22 CCGTTG AC RSP01283 Mean Expected Number 0.000 -strand +16 : -1 GAGAGAGAGAGAGAGAt AC RSP01499 Mean Expected Number 0.001 -strand +38 : +29 TTCCCCtTCT Totally 9 motifs of 6 different REs have been found Description of REs found 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cationic peroxidase, putative |LOCUS: AT1G30870 |PROD: the same as GENE |10991466..10993004 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.09 T - 0.28 C - 0.18 1 aaaggttttt taaaattata ctattaatat atatcatttg atcaaaaaaa 51 aattatatat cataaacatt atatacgaca tgcaggcaag tcactcgaat 101 attcaaatct taaagttgtg cctcccacgt aaaagcatca cattagtttc 151 caaacccaat tgtataTATA AATTactaca caacacacct ctcatcaaac 201 AAATTCATCA AAGCCAATCA AATTGAGAGA GATATCAAGA AAGCAAAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.006 +strand -79 : -73 CTCCCAC AC RSP00874 Mean Expected Number 0.004 +strand -93 : -83 TCTTAAAGTtG Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G31335 |PROD: the same as GENE |complement(11216895..11217374) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.18 T - 0.21 C - 0.17 1 gagacatgac taatgtgatt ataaaaacta gaagaaatcg tatggatggg 51 ccgaccaaaa aaaaagatga ccgttgagat ttaaacgtta agctttaaag 101 ctttacaaga cataaacgtt gcggacagaa tcggatcctt ccagagcctc 151 ccacaaactc atacaTATAA ATAcatgtga agtagaatca aagcaagaac 201 AAGAGTCCAA GAATAAAAAT CAATCAGAAA GAAGATTGAA CATAGATCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.003 +strand -53 : -47 CTCCCAC AC RSP00233 Mean Expected Number 0.006 -strand -15 : -24 TCTACtTCAC AC RSP01632 Mean Expected Number 0.001 +strand -108 : -98 CTTTAAAGCTT AC RSP01632 Mean Expected Number 0.001 -strand -101 : -111 CTTTAAAGCTT AC RSP01637 Mean Expected Number 0.001 +strand -108 : -98 CTTTAAAGCTT AC RSP01637 Mean Expected Number 0.001 -strand -101 : -111 CTTTAAAGCTT Totally 6 motifs of 4 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pinoresinol-lariciresinol reductase, putative |LOCUS: AT1G32100 |PROD: the same as GENE |complement(11546318..11547974) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.32 C - 0.12 1 tttgtcataa gtattcattg aaaaaggata tggtgagaaa agtattaata 51 gaaaatacgt attttctttc ataggcatca tatcaaatgt cgatatcttt 101 acttataatg catACAATta tcggttaggt gtacacatat atatgtaaat 151 gtatatgttt cgattcatTA TATATAtaca caatcaagag aggctctttc 201 AACCAAAACA TTGATCTATA GAGAGAGAGA GAGAACAAAA AATGGGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand +20 : +28 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +22 : +30 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +24 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +26 : +34 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 +strand +19 : +35 tAGAGAGAGAGAGAGAA AC RSP01702 Mean Expected Number 0.008 +strand -147 : -138 AAtACGTATT AC RSP01702 Mean Expected Number 0.008 -strand -138 : -147 AAtACGTATT Totally 7 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: alternative oxidase, putative |LOCUS: AT1G32350 |PROD: the same as GENE |complement(11666957..11668670) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.33 C - 0.22 1 taataatata atatgatggt gacaaacaca atccttaagt aatttcacat 51 gttcttttac ttttccacaa acataaaatg taacaaaacg tgtcaaacat 101 ttcctccatt cttattcatc ctccaagaaa ctttgaactt gaccgagatt 151 agtaataatc actcgtgtaT ATAAATTcat ctcttcataa tttatctgcc 201 ACATATGAAC ATAACCCAAT CTGAAGATCA ATCATAACCT TAAACCATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.004 +strand -59 : -53 ACCGAGA AC RSP01030 Mean Expected Number 0.009 +strand -75 : -68 AGAAACTT AC RSP01035 Mean Expected Number 0.003 +strand -113 : -107 ACGTGTC Totally 3 motifs of 3 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dienelactone hydrolase family protein |LOCUS: AT1G35420 |PROD: the same as GENE |13026292..13027645 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +6 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.09 T - 0.38 C - 0.22 1 catagacttt accatttttc agattttcat tgttaacaac ccctaaaagt 51 atattattat gatctcaatt tcttccactt cctttttttt ttcggtttta 101 ccaatttctc cacttaactg ttACAATtca atattttatt aacaaatatc 151 caaaacaaTA TAAAGAaaaa cttctggacc atattgattc tagaaagata 201 CTTACAATGG CTGCATCGTT AGCCTCTCTT TCCTCCTTAG CTAAAGCCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00288 Mean Expected Number 0.009 -strand -20 : -25 TGGTCC AC RSP00751 Mean Expected Number 0.002 -strand -103 : -114 AAACCGAaAAAA AC RSP01678 Mean Expected Number 0.008 -strand -60 : -71 tAATAAAATATT AC RSP01687 Mean Expected Number 0.003 -strand +49 : +43 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G35430 |PROD: the same as GENE |complement(13030531..13031130) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.31 C - 0.20 1 tttttgtact cgttagctta tctgtcttca gaaatgttct tgtactttcc 51 gactctttgt atttcataat aactttcctc caaactggtc ttgctcatat 101 aacaaacaga tttatcaaat tttgtaaata agtaaaaaac agtcacatga 151 caaaaaccaa acacaagtaT ATAAAAAagt caaataaaaa gaacaaagtc 201 ATGTGCCAAA GAAGCTTCTC CATGATCCCA CTCATTTACC AAAGTCGTGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.007 +strand -74 : -63 AAtAAGTAAAAA AC RSP00129 Mean Expected Number 0.008 -strand +49 : +44 CACGAC AC RSP00749 Mean Expected Number 0.004 +strand -82 : -71 ATTTTGTAAaTA Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: trehalose-6-phosphate phosphatase, putative |LOCUS: AT1G35910 |PROD: the same as GENE |complement(13364219..13366270) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.30 C - 0.19 1 gtcaaatatt tactaattaa tggaccaaaa tcctctaact tgcaaatttg 51 tatctacatc aacttaaaaa ttaggaatat gcgacccaaa aaaaaaaaaa 101 ctaggaataa taataaaaaa atggaatgat gtggaggaag ctctttactc 151 tttgagagga agttTATAAA TTgaccacac atttagtcta ttatcatcac 201 ATGTATTAAG ACTTGACAAC TTGTCTTTCT CACACCAAAC CCCTCTCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 -strand -179 : -188 CATTAATTAG AC RSP00467 Mean Expected Number 0.004 -strand -24 : -33 TGGTCAATTt AC RSP01469 Mean Expected Number 0.006 +strand -4 : +6 TCACATGTaT Totally 3 motifs of 3 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L35a (RPL35aB) |LOCUS: AT1G41880 |PROD: the same as GENE |complement(15653564..15654932) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.30 C - 0.16 1 attcttaagc aaagccatat tgattaagaa aataaataat cattttctta 51 tgcaaagcca tatttgggcc aagccgtatt aaagtttggg ccaacttgtt 101 tgagatagcc acatataagc CCAATagagt tttgttgctg agcttattta 151 tgaatccaTA TAAAGTcttg acctaatagc gaaaactagg gtttttctct 201 GTGAATTCGC TCGGCGGCAT AAAAGAGAGT AAGAAGAGGA AGACGAGAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.009 -strand -167 : -177 TATTTtCTTAA AC RSP00447 Mean Expected Number 0.008 +strand -193 : -184 AGCAAAGCcA AC RSP01757 Mean Expected Number 0.002 -strand -29 : -36 GTCAAGAC Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ALDH3H1 |LOCUS: AT1G44170 |PROD: aldehyde dehydrogenase, putative (ALDH) |complement(16798399..16802761) |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +290 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.39 C - 0.10 1 tttaatatgt atgtacaaac tttaaattac aactaatatg aaactgaaga 51 aatatataga aataaaatat tttattctta ctttgttgta atcaaattat 101 ttgttttgtt aaaaattatc aaaaaaaaaa tctttcttga tattctcttt 151 ttgacgtttc ttcatctcTA TAAATAttgt aacgcatgct tttttttatt 201 ATCAATTTCG AGGAATAAAA GTAAGAAACA TTGCGACAAA AAAAAAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.009 -strand -60 : -67 ATCAAGAA AC RSP00669 Mean Expected Number 0.004 -strand +4 : -10 TGATAATAaAAAAA AC RSP01086 Mean Expected Number 0.006 +strand -50 : -41 TTgACGTTTC Totally 3 motifs of 3 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: nodulin MtN21 family protein |LOCUS: AT1G44800 |PROD: the same as GENE |complement(16916449..16919436) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.35 C - 0.18 1 tgcatatgta aaagtaaata actatgtaag acatattttt ctgttaactt 51 attcatatct ctaaagtgta aacactagtt cattaaaata ttccaaaaga 101 tacgtagacg tattATTGAg ttaacaaaat aatgagtgta ttttttttat 151 tctaactttt gctcgacTAT AAAAAggagt catctcccat taggttttgc 201 CTGCCTCAAA CAAATAGAGC TTATCTCATC ACTCACCAAA CAACTCTCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.006 +strand -194 : -187 TGTAAAAG AC RSP00068 Mean Expected Number 0.003 +strand -102 : -93 GAtACGTAGA AC RSP00355 Mean Expected Number 0.009 -strand -155 : -162 TAACAGAA AC RSP00870 Mean Expected Number 0.009 +strand -194 : -185 TGTAAAAGTa AC RSP00871 Mean Expected Number 0.006 -strand +37 : +28 GGTGAGTgAT AC RSP01274 Mean Expected Number 0.001 -strand -93 : -102 TCtACGTATC AC RSP01621 Mean Expected Number 0.008 -strand -131 : -140 TACACTTTAG Totally 7 motifs of 7 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: peroxidase, putative |LOCUS: AT1G44970 |PROD: the same as GENE |17004652..17006124 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.32 C - 0.19 1 catgtgaagt taggcacatg gattcgttct tggagttggt acaaggactt 51 ctaaaagaca acaatgaggt ataataagga caagttgact atgtctctct 101 cttttatctt aacattctaa attaggattt ggtaaactga gagcagttag 151 cttcttgaat ctctaaagTA TAAAAAccct caccgtttta ctactatctc 201 ATCTTAAAAC TCCCAAGTAA CAAAAATGGC TATCTCAAAG CTTATTCCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00195 Mean Expected Number 0.001 -strand -154 : -164 TCCtTGTACCA AC RSP00331 Mean Expected Number 0.007 -strand -176 : -184 GAATCCATG AC RSP00792 Mean Expected Number 0.007 +strand +13 : +22 CCAAGtAACA AC RSP00864 Mean Expected Number 0.001 -strand -99 : -107 AGAGAGAGA AC RSP00949 Mean Expected Number 0.004 -strand -110 : -117 TAGTCAAC AC RSP00985 Mean Expected Number 0.007 +strand -56 : -47 AGTTAGcTTC AC RSP01640 Mean Expected Number 0.005 +strand -112 : -103 CTATGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G47280 |PROD: the same as GENE |complement(17334499..17336846) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.09 T - 0.30 C - 0.14 1 taaaaaaaac aagaaaatga aagatataaa atcactgaaa acatacatac 51 atttcaaatg aaatcaaaaa tatcatcaac aataaaactg tgttattatt 101 attaaaaaaa aaaaaaaaaa aATTGTgttc cgatcgtttt gccgtttaag 151 tcgctcttat tactcTATAA ATAgtacact tcttttgtca tatagaagac 201 AAATCAATCA AGCAAAATTT TGTCTTAAAA CAAAAATCTT TAATCAATAG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G47485 |PROD: the same as GENE |17424888..17425506 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.33 C - 0.19 1 aatacagagc agacatggaa agttggaaac atatggaagt atgaatcacc 51 tggattacat aatatactca gacatcataa aacatcatca ttccattttt 101 gaagtaaaaa atttccccac attttagatt ttatttaaga caaatgctct 151 tctcttgtat tttctaTATA AATAtcgaaa atcacattct tctagtttcc 201 ACACCTTATG TTCTCCAATC CAACACATAT ATTTTCTTTC ACAAAAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00871 Mean Expected Number 0.007 -strand -151 : -160 GGTGAtTCAT AC RSP01046 Mean Expected Number 0.002 +strand +16 : +24 CAATCCAAC Totally 2 motifs of 2 different REs have been found Description of REs found 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G47980 |PROD: the same as GENE |complement(17695503..17697530) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.22 C - 0.24 1 atcctaagat gtgtcctaag aatagtaact gaaagcgtca aatatccaca 51 tggaactcat ctaccagtga aaaagccacg tggcactatc cacgaaatcc 101 tctccggagt aaataagccg gcaaaagagg agacttcttt tgctattcac 151 tgaagtccta aacccTATAA ATAaatcacc ttcaaaccca aaacaaaatc 201 AGATCATAAA GAACCAAAAA TAAAAGCCAA AACGTTTTTA GACATGGCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.001 +strand -126 : -117 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -117 : -126 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -126 : -117 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -117 : -126 GCCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -125 : -116 CCACGTGGCa AC RSP00153 Mean Expected Number 0.001 -strand -118 : -127 CCACGTGGCt AC RSP00175 Mean Expected Number 0.001 +strand -124 : -117 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -119 : -126 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -126 : -117 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -117 : -126 GcCACGTGGC AC RSP00313 Mean Expected Number 0.002 +strand -154 : -144 CACATGGaACT AC RSP00313 Mean Expected Number 0.002 +strand -124 : -114 CACgTGGCACT AC RSP00313 Mean Expected Number 0.002 +strand +41 : +51 gACATGGCACT AC RSP00682 Mean Expected Number 0.001 +strand -126 : -117 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -117 : -126 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -125 : -118 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -118 : -125 CCACGTGG AC RSP01034 Mean Expected Number 0.004 +strand -123 : -117 ACGTGGC AC RSP01034 Mean Expected Number 0.006 -strand -120 : -126 ACGTGGC AC RSP01184 Mean Expected Number 0.003 +strand -146 : -135 ACTCAtCTACCA AC RSP01296 Mean Expected Number 0.006 +strand -36 : -28 CTATAAATA AC RSP01591 Mean Expected Number 0.000 +strand -126 : -114 gCCACGTGGCACT AC RSP01726 Mean Expected Number 0.000 -strand -116 : -127 TGCCACGTGGcT Totally 23 motifs of 13 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1) 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1414. Group TF: GBF /AC: RSP01591//OS: Glycine max /GENE: SRS-4/RE: G box /TF: GBF 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AT hook motif-containing protein |LOCUS: AT1G48610 |PROD: the same as GENE |complement(17974346..17976971) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +505 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.34 C - 0.13 1 aagtagtgta tttttcgatt ttggttttat aaatcaactt ttttttttga 51 aaaagttaaa aagaaatcac caccacattt gcatgttata ctataatacc 101 aaaaaattaa tattcgtgat ttattttaaa aatctgtgaa ttaaaaagaa 151 aaatgaaatg ttGATAAATA aaaataaaaa caaggagtaa aggtggaccc 201 ATATCGGTTG ACGCAACTGA TTCTGAACCT CTCGGTCGTT CGTTTCTACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.004 -strand +36 : +30 ACCGAGA AC RSP00741 Mean Expected Number 0.006 +strand -151 : -140 AAAAaGTTAAAA Totally 2 motifs of 2 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G48630 |PROD: the same as GENE |complement(17985448..17986995) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.27 C - 0.26 1 gctataccaa ttctggttaa gcgttccaaa cagaaagata taaatctcgg 51 ttccataatt gtcccaacat gaaaccaagt tgggtagaat accgggcctt 101 aatgctggcc caaatgaaga gacccaaact ATTGAcaaat gaaaacaaag 151 aaccctaatt atctctaacT ATAAATActc tcggtttctc gttacctcca 201 TTTTGCCCTC TCCCATTTTT GTCGCCGAAA CCCTAAATCT CGACCTCAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand +36 : +28 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +28 : +36 AAACCCTAA AC RSP00421 Mean Expected Number 0.007 -strand -16 : -22 ACCGAGA AC RSP00421 Mean Expected Number 0.007 -strand -150 : -156 ACCGAGA AC RSP00297 Mean Expected Number 0.000 +strand -94 : +35 GGCCCA-- ** bp --ACCCTAA AC RSP01013 Mean Expected Number 0.004 +strand -90 : -81 CAAATGaAGA AC RSP01014 Mean Expected Number 0.008 +strand -90 : -81 CAAATGAAGA AC RSP01014 Mean Expected Number 0.008 +strand -65 : -56 CAAATGAAaA AC RSP01015 Mean Expected Number 0.008 +strand -65 : -56 CAAATGAAAa AC RSP01296 Mean Expected Number 0.005 +strand -32 : -24 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -32 : -23 CTATAAATAC AC RSP01303 Mean Expected Number 0.009 +strand +27 : +36 gAAACCCTAA AC RSP01304 Mean Expected Number 0.006 +strand -52 : -43 aGAACCCTAA Totally 13 motifs of 11 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ACT8 |LOCUS: AT1G49240 |PROD: actin 8 (ACT8) |18219578..18221966 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +629 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.35 C - 0.21 1 tttcacaaac ttttcaaaaa agtataaata aaagaggctg tctgacagcc 51 atgtcacgtt atactttttc cgtatgatcg aaatgattcg tctttgtcga 101 atttaattat ttccaaaATT GAtgactcta aagaaaaaaa aatagttttt 151 cagataaacc cgcctaTATA AATAgttcaa cactcggttt atttcttctc 201 CCCTCTTTGA ATTGCCTCGT CGTCTTCAGC TTCATCGGCC GTTGCATTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -184 : -173 AAAAAGTAtAAA AC RSP00933 Mean Expected Number 0.002 -strand -173 : -185 TTTATAcTTTTTT AC RSP01692 Mean Expected Number 0.003 -strand -119 : -126 TTCGATCA Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G49500 |PROD: the same as GENE |complement(18325476..18325952) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.25 C - 0.20 1 tataaagaaa cgccccctac gtattattgg cccttcgcat aaaccaagag 51 ccaacgaagc aagcatcttc caaagaaaaa acgttgccaa taattgcttc 101 caagtttcaa gccacgtagt attttgatcg gtccactcaa ataaaataat 151 aatatggata tttgcaTATA TATAagtcta ggtattgcat gtaagacttc 201 ACAACGTAGA GCAAGATATC TGGATACGCG GAAAATAGAG AGAAGAAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -83 : -90 TACGTGGC AC RSP00064 Mean Expected Number 0.003 -strand -81 : -90 AcTACGTGGC AC RSP00107 Mean Expected Number 0.008 -strand -10 : -16 CATGCAA AC RSP01034 Mean Expected Number 0.005 -strand -84 : -90 ACGTGGC AC RSP01060 Mean Expected Number 0.004 +strand -113 : -105 CAATAATTG AC RSP01060 Mean Expected Number 0.004 -strand -105 : -113 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -113 : -105 CAATAATTG AC RSP01259 Mean Expected Number 0.002 -strand -82 : -89 CTACGTGG Totally 8 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G50900 |PROD: the same as GENE |18869874..18870872 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.22 T - 0.31 C - 0.11 1 gttggggtct tgagagagtg gagaccacgt ctttgccatg tcatgcttcg 51 ttgttgtttt ttaagaaaaa atgaaaaaat agattcttcg tggttgtcac 101 aaaagaaaaa ggaaataaaa tcagtatctg aaatctaacg gtgaaaatta 151 atcgataaAA TAAATAaaaa gatttatagt cttttttaga tagaagggag 201 AAAATGAGTG GATAATACAA CCACTGAATC TGTTTTGCTT TAGTTGGAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00423 Mean Expected Number 0.007 -strand -170 : -175 GACGTG AC RSP00424 Mean Expected Number 0.007 +strand -175 : -170 CACGTC AC RSP00460 Mean Expected Number 0.004 +strand -166 : -157 GcCATGTCAT AC RSP00819 Mean Expected Number 0.001 +strand -177 : -168 aCCACGTCTT AC RSP00887 Mean Expected Number 0.002 -strand -113 : -121 AAGAATCTA AC RSP01136 Mean Expected Number 0.008 +strand -106 : -100 TGTCACA AC RSP01723 Mean Expected Number 0.000 +strand -178 : -167 GaCCACGTCTTT Totally 7 motifs of 7 different REs have been found Description of REs found 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1531. Group TF: STF1/HY5 /AC: RSP01723//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: C/G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: photosystem II 5 kD protein |LOCUS: AT1G51400 |PROD: the same as GENE |complement(19055730..19056250) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.26 C - 0.19 1 gctttcgaag aagtgaattg ggcttttgac cttttttgcc caagaatcaa 51 gaatggacct agttcttccg gacactacaa gaaagaaagc ttctagtgtt 101 cattttgttt ggaaaataag gatagcacag agacacgtgg caaaaaccca 151 tttgcTATAA ATTcatattt tggataagga actggatcat ccccaacttt 201 TAAAACACAA TCCATCACCA AGTCATCAGA TAAACAAGAA ACAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -68 : -60 ACACGTGGC AC RSP00056 Mean Expected Number 0.005 -strand -60 : -69 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -69 : -60 GaCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -60 : -69 GCCACGTGtC AC RSP00175 Mean Expected Number 0.001 +strand -67 : -60 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -69 : -60 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -70 : -59 aGACACGTGGCA AC RSP00340 Mean Expected Number 0.005 -strand -60 : -69 gCCACGTGTC AC RSP00741 Mean Expected Number 0.001 -strand -166 : -177 AAAAGGTcAAAA AC RSP00860 Mean Expected Number 0.007 +strand -121 : -113 AGAAAGAAA AC RSP00864 Mean Expected Number 0.002 +strand +43 : +51 AGAGAGAGA AC RSP00879 Mean Expected Number 0.005 -strand -194 : -200 CGAAAGC AC RSP00913 Mean Expected Number 0.002 -strand +27 : +18 GATGACTTGG AC RSP00936 Mean Expected Number 0.000 -strand -59 : -70 TGCCACGTGTCt AC RSP01032 Mean Expected Number 0.004 -strand -28 : -37 CCAAAATATG AC RSP01034 Mean Expected Number 0.006 +strand -66 : -60 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -68 : -61 ACACGTGG Totally 17 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RNA-binding protein, putative |LOCUS: AT1G51510 |PROD: the same as GENE |complement(19106475..19108518) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.19 T - 0.16 C - 0.18 1 tgaagcgtga aagaataaat aaaaaaagta agagcccaaa ataagcccac 51 taacattgac gagaggagtt taatcaaagc ctgtttaaaa gggaaaagga 101 aaaactagcg tgagaaagaa atacaagcgt aaaagcccaa aataagccca 151 cttaaggtcc aatatattcc TATAAACAac actggcagag aaatatcttg 201 ATAGAAGAAA GAGCTCCGTC CCCAAAAACA AAGGAAACAA AAAATCAGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.007 +strand +16 : +21 CCGTCC AC RSP00755 Mean Expected Number 0.003 -strand -30 : -36 AGGAATA AC RSP01032 Mean Expected Number 0.003 +strand -165 : -156 CCAAAATAAG AC RSP01032 Mean Expected Number 0.003 +strand -64 : -55 CCAAAATAAG Totally 4 motifs of 3 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 717. Group RE: submotif A /AC: RSP00755//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif A /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: IAA18 |LOCUS: AT1G51950 |PROD: |19308984..19311179 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +355 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.19 1 gcagagagag agataaaaag attgattgcg tgtgtttcac accaataaat 51 ccctttattt ttattttttg gtctccaaat ttactaactt ctaataattt 101 CCAATtttac cccttatttt tcttcctttg gttttaacct attcactgca 151 tttccttggT ATAAAATcca acttcttctc cttcaagaat ctagagatag 201 AGAGAGAGAG AGAACACAAA GTGGGAAAAA AGATAAGAAC CCACCATAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00155 Mean Expected Number 0.000 +strand -183 : -171 AAGATTGATTGcG AC RSP00227 Mean Expected Number 0.002 +strand +30 : +38 AAGATAAGA AC RSP00741 Mean Expected Number 0.004 -strand -58 : -69 AAtAGGTTAAAA AC RSP00864 Mean Expected Number 0.000 +strand -198 : -190 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand -196 : -188 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand -2 : +7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +1 : +9 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +3 : +11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +5 : +13 AGAGAGAGA AC RSP00887 Mean Expected Number 0.003 +strand -16 : -8 AAGAATCTA AC RSP01283 Mean Expected Number 0.000 +strand -3 : +14 tAGAGAGAGAGAGAGAA Totally 11 motifs of 6 different REs have been found Description of REs found 150. Group RE: 13 bp CytRE /AC: RSP00155//OS: Cucumis sativus /GENE: hpr-A/RE: 13 bp CytRE /TF: unknown 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G52200 |PROD: the same as GENE |complement(19445744..19447094) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.35 C - 0.21 1 tcaaaactta aatgtgaact acgtcattca aaatttcttc tttcttttca 51 gcatagaagt ttattcgtta aatcaaaaga aaaactcaat ttttctattg 101 aatattattt gattaatttc atggcttaag gaaatataga atccttctcc 151 ttctcaaatt ctccTATAAA TCaacccttc acgtcaaaac tagcttgcta 201 CACTTAACAT ATCAACCAAT GGGTCGTGTC ACTACTCCAT CCGAGGAGGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.008 -strand +28 : +23 CACGAC AC RSP00158 Mean Expected Number 0.010 -strand -65 : -75 TATTTcCTTAA Totally 2 motifs of 2 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein kinase, putative |LOCUS: AT1G52540 |PROD: the same as GENE |complement(19573727..19575873) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +320 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.36 C - 0.12 1 tatttgaact tttgtatgta ttaaaaattg caagattttg taagtacaga 51 ttcaccaagg tgaggtgtgt gattaggaaa ctttgattag ttgtcatgtg 101 tcatcaacag gccatgaaaa ggaaatcttt gaaattcaaa aaACAATacc 151 ttttgatgaa attattacta TATAAATAct atatgtgact atgtgtggat 201 ATGCACAATC ATTCCCACTA ATAGTTTAAT AAAGTGTATA ATTTTTTTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 -strand -46 : -52 CAAAAGG Totally 1 motifs of 1 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G52680 |PROD: the same as GENE |complement(19621811..19622680) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.33 C - 0.20 1 ttcacttctt gaccaagcaa cgttagggta ataaatcctc aaactattca 51 cctccacaaa aaattagcca tgtcaatcgt caatggtatg ttattttcca 101 cgtgttagtg taatgcttag atttaggatt ttactaaaat atacactttc 151 taattaTATA AATAccatta taatgcatat caaatccctt caagtattct 201 ACAAGCTTAC AATCTTAATT AATTAAGACA TTTCACAGAA CAACCAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.007 +strand -54 : -39 TTTCTAATTATAtAAA AC RSP00085 Mean Expected Number 0.007 -strand -39 : -54 TTTaTATAATTAGAAA AC RSP00340 Mean Expected Number 0.002 +strand -104 : -95 TCCACGTGTt AC RSP00509 Mean Expected Number 0.003 +strand -44 : -33 TATAAATACCAt AC RSP00524 Mean Expected Number 0.004 -strand -96 : -102 ACACGTG AC RSP00792 Mean Expected Number 0.009 +strand -188 : -179 CCAAGCAACg AC RSP01255 Mean Expected Number 0.001 -strand -96 : -103 ACACGTGG AC RSP01463 Mean Expected Number 0.008 -strand -38 : -50 ATTTATATAaTTA AC RSP01734 Mean Expected Number 0.008 +strand -104 : -98 TCCACGT Totally 9 motifs of 8 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: late embryogenesis abundant protein |LOCUS: AT1G52690 |PROD: the same as GENE |19623413..19625202 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.21 C - 0.27 1 acgtgtcaca tagatatagg tcatcatgaa aacgagaaac ctaactttaa 51 cactcgcaca taactccaag tttcgaaact tcgtcacatc aacctaatcg 101 gggcacgtac ctacacacct gtcgcgaaac tgcaacacct atcttgttct 151 ctcgccgacc aagacttgcT ATAAATAact ctgactaacg agtcggagac 201 AACTCACAGT TCCAAACACA CAAAAAACAC AAGATCTAAA AAAAAAAGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00917 Mean Expected Number 0.008 -strand -108 : -117 GTTGATGTGA AC RSP01035 Mean Expected Number 0.006 +strand -200 : -194 ACGTGTC AC RSP01296 Mean Expected Number 0.005 +strand -32 : -24 CTATAAATA Totally 3 motifs of 3 different REs have been found Description of REs found 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: IAA6 |LOCUS: AT1G52830 |PROD: |complement(19676164..19677312) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.27 C - 0.22 1 aggacccaac atatgtctct catgtgaccg accaacacat cctcagttga 51 cctgtctttg gtctaacctt gtcttcctcc acaaagctaa cagaaataat 101 tatgaatgtt agtctcttcc atgtgtcagt atattATTGG atcttgttgg 151 agcaacttga caacaTATAA AAGcacgagg cagctcaata ctatcattcc 201 AACAAGAGAA GTGCTTGAGA GAAAAAAAAA GTATCAAAAC TTCATATAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.004 +strand -83 : -74 TCCAtGTGTC AC RSP00709 Mean Expected Number 0.008 -strand -99 : -107 TAATTATTT AC RSP01640 Mean Expected Number 0.004 +strand -190 : -181 aTATGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G52910 |PROD: the same as GENE |19711729..19712991 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.39 C - 0.14 1 ttattagtct attgacgtta gttcatatac ttaagtgaaa cttatttttt 51 taattaaatc gtgttgtaaa aggcaacgaa tttgcgttgt cttttttttt 101 ttattagtaa agaaatagtc atttcatttt ctttaattcg gtcacaagtc 151 tcttgacatt ttcgtcTATA TATAtattag tattatcaag aaaacgatcc 201 ATCTTCGAGG GAAAGAGAAA GATCACAAGA AAAGCTCTCT CAGAATAATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.009 +strand -136 : -129 TGTAAAAG AC RSP00574 Mean Expected Number 0.007 +strand +41 : +48 CAGAATAA AC RSP00613 Mean Expected Number 0.007 +strand -16 : -9 ATCAAGAA AC RSP01601 Mean Expected Number 0.008 -strand -161 : -168 TTTCACTT Totally 4 motifs of 4 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G53030 |PROD: the same as GENE |complement(19763721..19765110) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1000 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.39 C - 0.20 1 tttgttcttc gattgtccta tgtgtagatc ctatatttgg taaatccatt 51 caactctttg taaaagaaga atcagagatt cttttcattt gggttactca 101 ATTGTgaaaa acttaaaatg agtaaatggg cctgaaaagc ccatcaacag 151 cccattaacT ATAAATTgtt gtgagctttt acatttctca gttctttctt 201 TCCTTGCTCG CCCAAGATTC TTCATTGTTC TACGTTTCTT GACTCTTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.004 +strand -142 : -135 TGTAAAAG AC RSP00068 Mean Expected Number 0.009 -strand +38 : +29 GAaACGTAGA AC RSP00881 Mean Expected Number 0.006 +strand -58 : -49 ATCAACAgCC AC RSP00979 Mean Expected Number 0.009 +strand -155 : -146 CCATtCAACT AC RSP01031 Mean Expected Number 0.008 -strand +21 : +14 AGAATCTT Totally 5 motifs of 5 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G53870 |PROD: the same as GENE |20115930..20116823 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.35 C - 0.16 1 acacgtgaca acgaccttac gtgtatgtac gtgttgaata gaattaagat 51 acgttttata aacttctctt atctcacata ttcaacatgt ggatgaagat 101 cttcgtattt tttattttaa tttttatgat acacccataa actgaattat 151 tactagctag tagaggcTAT AAATAcgaag aagatatcta tatatatact 201 ATCTATCAGT GCCAAAAAAA AGTTTTTCAA TATATGCAAA TATACAATCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.004 +strand -174 : -168 GTACGTG AC RSP00503 Mean Expected Number 0.002 +strand -48 : -41 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -41 : -48 CTAGCTAG AC RSP00524 Mean Expected Number 0.004 +strand -200 : -194 ACACGTG AC RSP01261 Mean Expected Number 0.004 +strand -184 : -177 TTACGTGT AC RSP01301 Mean Expected Number 0.002 +strand -34 : -25 CTATAAATAC Totally 6 motifs of 5 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myrosinase-associated protein, putative |LOCUS: AT1G54000 |PROD: the same as GENE |complement(20157837..20160084) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.34 C - 0.18 1 cagtaatgcg tcagacgtga ttaagcgaac tatataatat aattgatcga 51 taatcgtttg ctagtgcgtt aaataggtgt atagtaaaat gaacctcgcg 101 ctacacgtta ttatttgtat agtaaaatga actattattt tcATTGCcaa 151 attgtagtac ttgcaaTATA AATAtaacga atcggtctac gagctaaggc 201 ACAAAAGCAA TCTTCTTCTC TTTTCACAGT TCTGTTTCTC CCTCTCTCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.002 -strand -146 : -156 GATtATCGATC AC RSP00868 Mean Expected Number 0.010 -strand -157 : -168 aATTATATTATA Totally 2 motifs of 2 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myrosinase-associated protein, putative |LOCUS: AT1G54010 |PROD: the same as GENE |complement(20162332..20164480) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.35 C - 0.17 1 gcattaacta ggtgtgtaga aaaaagaaaa aaatgaacct cgagcaacac 51 gttatcatat attcatattt aaataacaat atttttcaat tgctaaattg 101 cttttttctt aaaaACAATc tttttgataa aaaaaattca gttgccaaat 151 tgtgtagtat ttacaaTATA AATAtaacgt atcggtctac gagctaagac 201 ACAAAAGCAA TCTTCTACTC ATTTACTGTT CTGTTTCACT TTCTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +50 : +42 AGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EIF4A-2 |LOCUS: AT1G54270 |PROD: |20263359..20265933 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +803 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.33 C - 0.10 1 ctactcatat ttccacttga aaacaacatt ttgtgattgt gatttgatat 51 tttctggtgt gtgttagtat gcaattgcga ttcattattc atagtctctt 101 ttgacattgg tgtaaaataa cttgattggt aACAATattt tccctactag 151 tttaggaaaa gTATAAAGAg gtgagaaaaa tctcaaatcg aaaaggaaga 201 GGAAAGTGGG GGTAAAGTTG GAAATATAAA AATTTTGGAA AAGTAGAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00472 Mean Expected Number 0.000 +strand +3 : +14 AAAGTGGGGGTA AC RSP00522 Mean Expected Number 0.002 +strand -188 : -182 CCACTTG AC RSP00748 Mean Expected Number 0.002 +strand -77 : -66 GAtTGGTAACAA AC RSP00962 Mean Expected Number 0.004 -strand -194 : -200 TGAGTAG Totally 4 motifs of 4 different REs have been found Description of REs found 450. Group TF: Alfin1 /AC: RSP00472//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS2 /TF: Alfin1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G55000 |PROD: the same as GENE |20518301..20520163 |SUPPORT | 2 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.30 C - 0.14 1 agcagaacgt tacttaataa cagttgtaaa ctataaaata aaaatatttt 51 ataaataaat acaatttgta aatttttata tatactaact ttaaaaaata 101 aattatactc gcggtACAAT accgcgggtt aaaatctagt aaacagtact 151 tttgcacaaa aaaaaaataa taTATAAAAT gtatcttatg gacagcatct 201 ATTAAAATCT GTGGATAAGC TGCTTCTGCG GCGATCAAAA ACGCCGTCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.002 -strand +20 : +11 GCTTATCCAC AC RSP00093 Mean Expected Number 0.008 -strand +17 : +11 TATCCAC AC RSP00125 Mean Expected Number 0.002 -strand -153 : -164 AATATTTTTATT AC RSP00135 Mean Expected Number 0.010 -strand -153 : -164 AATATTTTTATt AC RSP00838 Mean Expected Number 0.004 +strand +44 : +49 CCGTCG AC RSP00961 Mean Expected Number 0.002 -strand -45 : -52 TGCAAAAG AC RSP01458 Mean Expected Number 0.008 -strand -120 : -132 ATaTAAAAATTTA Totally 7 motifs of 7 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G55260 |PROD: the same as GENE |20618418..20620034 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.25 C - 0.22 1 attgttttca ttttctgacc gatagattgg ctgagtcctt tgaaaaaact 51 gtataagcca ttattaacac tcaaatatac acacgttcaa aaattattat 101 cttgagcaat aaatgatccc atcatccaaC CAATacgtcg acactcacag 151 agtcacagag gacagagcca TATATATAca cgaacataca aagagactag 201 AGGACACGTT TCTATCTAGA GAGAACACAA CACATCGAAC CATGGAGAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01035 Mean Expected Number 0.010 -strand +9 : +3 ACGTGTC AC RSP01600 Mean Expected Number 0.007 -strand -156 : -163 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ZCW32 |LOCUS: AT1G59640 |PROD: basic helix-loop-helix (bHLH) family protein |complement(21912842..21914866) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +171 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.25 C - 0.17 1 cgtaggtaca ctcgcgtcgc agaagatcaa aagtcaacga taggtcagag 51 taaggaaacc tcgccatgaa gtgaaagtta ataaacaccg tagctcccga 101 ggtacaagaa acagaaaaac aaatatattt atgtctgaaa acttgaataa 151 aataataata tttatataTT TAAATAtgtt gggaatatta ttaatttatt 201 AACAAGAACA CAGTAACGCA ATCACAGACT CCACAGTCCA AGGAGTTTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01463 Mean Expected Number 0.001 +strand -41 : -29 ATTTATATATTTA Totally 1 motifs of 1 different REs have been found Description of REs found 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGSTU15 |LOCUS: AT1G59670 |PROD: glutathione S-transferase, putative |21933675..21935031 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.33 C - 0.14 1 agagtatgaa tctaataact ccaaatttat gaagatttta gattactttt 51 tacaaatctt atttgaataa cataaacttt aacatatttt taaaaagtct 101 tgATTGAata tcaacagatt ctacataaca ctttaaatca ctaacttttt 151 ttttgaaatc ataTATAAAC Caataacacc ccctaattgt atacctaaac 201 TAAAAATAAT TTAGACAAAA CAAAGATGGG AGAGAGAGAG GAAGTGAAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.007 -strand -176 : -183 TTTGGAGT AC RSP00863 Mean Expected Number 0.000 +strand +35 : +43 AGAGAGGAA AC RSP00864 Mean Expected Number 0.000 +strand +31 : +39 AGAGAGAGA AC RSP00865 Mean Expected Number 0.000 +strand +29 : +37 GGAGAGAGA AC RSP01105 Mean Expected Number 0.004 +strand -22 : -17 CCCCCT Totally 5 motifs of 5 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G60060 |PROD: the same as GENE |22142849..22145455 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.16 T - 0.27 C - 0.11 1 aaataaaaca cgaaaaaagt aacgttaggt aaatggctaa acacgaggaa 51 aagccaaaaa tataaataat tcaatttctt atctccatca agatttaata 101 aaagtaaata aaaattaaga aataaataat gaaaagatgc tttggggagt 151 ggatcTATAA ATCttgttat ataaaggagg atagatagtg agggttttct 201 ACCTTCTTCT ATCTAAAGGA AGTCTTTACT CAGAGAACCA AAAGAAAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00009 Mean Expected Number 0.001 +strand -19 : +14 TAGATA-- ** bp --TATCTA AC RSP00009 Mean Expected Number 0.001 -strand +15 : -19 TAGATA-- ** bp --TATCTA AC RSP00722 Mean Expected Number 0.007 -strand -118 : -124 GATAAGA AC RSP00999 Mean Expected Number 0.008 -strand -10 : -20 TCACTATCTAt AC RSP01008 Mean Expected Number 0.009 -strand -171 : -177 ACCTAAC AC RSP01056 Mean Expected Number 0.009 -strand -175 : -185 AAcGTTACTTT Totally 6 motifs of 5 different REs have been found Description of REs found 9. Group RE: GATA /Group TF: NIT2 /AC: RSP00009//OS: Spinacia oleracea /GENE: NiR/RE: GATA /TF: NIT2 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycine-rich RNA-binding protein, putative |LOCUS: AT1G60650 |PROD: the same as GENE |22343488..22346002 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +266 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.23 T - 0.33 C - 0.15 1 ggagactttc gtaccgtgag ttccgcagaa gagagcttgg agactgaaaa 51 ggggaaagct ttgctaaaga gaagggtttt agggttttta ggttattttt 101 gtaaattaag taacttttat aagggtgttt tagtcATTGA gtggacaaca 151 ttttatcccA ATAAATAtac ttattgagtt gaagttaatc ctctgcagtt 201 ATTTCATTGT CCATCACCAA TCGCCAAAAC CGCAGAAAGG TCTGACCTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 +strand -122 : -114 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand -114 : -122 AAACCCTAA AC RSP00918 Mean Expected Number 0.008 +strand -23 : -14 GTTGAAGTTA AC RSP01303 Mean Expected Number 0.007 -strand -113 : -122 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: peroxiredoxin type 2, putative |LOCUS: AT1G60740 |PROD: the same as GENE |22364739..22365617 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.40 C - 0.16 1 aattagtgag ggtttcctca aaaagattgt tgtatttttg gaaaacaaag 51 tttatttttg gatattggtt ctgcatttta catctaattt gttttttaaa 101 tcataatttt agaaaatcta ttactaaatt aagaaatcta tgaatggttt 151 acttcattcc gtaaaacacT ATAAATTgtc ctaaactcat attcgctctc 201 AAGTCAAAAC TCTTCTATTT TCCCCTGTCT TCATATCCAA CAGAGATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.009 +strand -80 : -65 TTACTAAATTaAGAAA AC RSP00085 Mean Expected Number 0.009 -strand -65 : -80 TTTCTtAATTTAGTAA AC RSP00441 Mean Expected Number 0.006 +strand -157 : -148 AACAAAGTtT AC RSP00628 Mean Expected Number 0.009 -strand -170 : -177 AACAATCT Totally 4 motifs of 3 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RALFL8 |LOCUS: AT1G61563 |PROD: rapid alkalinization factor (RALF) family protein |complement(22718586..22719113) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.06 T - 0.38 C - 0.18 1 tatgcaaatt ctataataat tttctagaaa cctttttttg ttattttcta 51 ttttaaacag acgtatctat ctttattttt actaaaaata acattcattt 101 actaaaatat atgtggttac taatcatcat ctaaatataa ccaactttga 151 aatcaatcta gtctctacta TATAAACAcc aactagcgct tgttcataat 201 CCCACAGAGC CAATTCCCGA TACATTATCA ATTATATAAA TAACATAAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00329 Mean Expected Number 0.010 -strand -136 : -141 TACGTC AC RSP01033 Mean Expected Number 0.002 +strand -170 : -161 CCTTTTTTTG AC RSP01600 Mean Expected Number 0.008 -strand -49 : -56 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 315. Group RE: ACGT motif /AC: RSP00329//OS: Arabidopsis thaliana /GENE: erd1/RE: ACGT motif /TF: unknown ||Identical REs AC: RSP01781 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RALFL9 |LOCUS: AT1G61566 |PROD: rapid alkalinization factor (RALF) family protein |complement(22720725..22721275) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.31 C - 0.19 1 ttatttaaat cgacgagtcg tctttgttta aaagtagttc gcgtaactta 51 cgtcaagaca aacactatat atggaactca agaaaaacaa cattcattta 101 ctaaaatata tgtggttact aatcatcatc caaatataac caagtttgaa 151 atccatatgt tctctactaT ATAAACAcca actagcgctt gttcataatc 201 CCATAGAGCC AATTTCCGAT ACAATATTAG ATATATAAAT AACACAAAGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.004 -strand -146 : -153 TGACGTAA AC RSP01463 Mean Expected Number 0.009 -strand +40 : +28 ATTTATATATcTA AC RSP01757 Mean Expected Number 0.002 +strand -149 : -142 GTCAAGAC Totally 3 motifs of 3 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G61930 |PROD: the same as GENE |22896766..22897635 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.39 C - 0.14 1 ataagatcat ccaagaatac aaatgttttt ttgggaaaaa gacaaaattt 51 gggttctaac tctccataat aaatgtaagt atccttttgt aagaaatgga 101 taatataggt gtcaaatttg aataatttta ttttcttcat ttgtactctt 151 gtcttcacag atgcTATATA TActcctcca tttctctcgg tgtgaacctt 201 ATAGCAAAAT CTCTAATAAT TGATTATATG AATTAATGGT TAAATTTTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.003 +strand -53 : -44 CTTGTCtTCA AC RSP00421 Mean Expected Number 0.005 -strand -10 : -16 ACCGAGA AC RSP00698 Mean Expected Number 0.006 +strand +29 : +39 TGAATTAATgG AC RSP00773 Mean Expected Number 0.004 +strand +29 : +38 TGAATTAATG AC RSP00778 Mean Expected Number 0.004 +strand +29 : +38 TGAATTAATG AC RSP01013 Mean Expected Number 0.006 -strand -58 : -67 CAAATGaAGA AC RSP01014 Mean Expected Number 0.001 -strand -58 : -67 CAAATGAAGA Totally 7 motifs of 7 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G62500 |PROD: the same as GENE |23135710..23137167 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.33 C - 0.22 1 accttgaagt ttgcatcgga ccaacaacga tccaaaaaac ctttagttgt 51 aacgcaataa aatgctccaa tatttctcga agtttggaac atcttctttt 101 ttcttcattt tcttgcctta cacatgttcg tttgtacgta ccataacaaa 151 taatcaaatc tactacactT ATAAACActa tacctattta tgtgcgtagt 201 GGTTAACACC CATACAAGAG TCACGGGTCA CATTTAAGCT TCAACTATAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01071 Mean Expected Number 0.005 -strand -67 : -76 CAAACGaACA Totally 1 motifs of 1 different REs have been found Description of REs found 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SEH1H |LOCUS: AT1G64350 |PROD: |23885175..23886960 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.32 C - 0.12 1 cattaataaa atcttaataa ttttaaactt tacaattatt ttttattaat 51 gtataagatt aaaaaaagtt aagaaaatat ttaataaaaa attacgtttt 101 gtatcggcta acggtccaat aggaaattat ggaagagTCA ATttcaacaa 151 atgcgattag tcgattgCAT AAATAggcca gttaaatgca taacaggccc 201 AATATTTTGG CCCAAGTCTT GATAATTCGA ATTAAACGAA AAAAATCGCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.000 +strand -90 : -83 ACGGTCCA AC RSP00495 Mean Expected Number 0.009 -strand -167 : -174 TGTAAAGT Totally 2 motifs of 2 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G64360 |PROD: the same as GENE |23891533..23892167 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.25 C - 0.18 1 aacgtatact tatctatact gatagtaaca catatagtca aaacacaaaa 51 ggtgaagatt gtaaatctca tccacttgaa atgaatctaa ttcataaaat 101 gatgtaacag aagcttgagg aatccaaACA ATgtacatac gttaatacaa 151 catgcaagtt catcTATAAA TAtggaacct taactctcgg ataagaattc 201 ACCAAGGCAA TACATTTTAC CTAAGAGAAC AGAAAAAAGA CACTTAGCAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.005 +strand -68 : -59 GtACATACGT AC RSP00522 Mean Expected Number 0.005 +strand -129 : -123 CCACTTG AC RSP01296 Mean Expected Number 0.010 +strand -37 : -29 CTATAAATA Totally 3 motifs of 3 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G64405 |PROD: the same as GENE |23927395..23927999 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.39 C - 0.15 1 actcatatat actctttatt acattgttga atttaaaaaa atcttaatta 51 tgtcactttc tcttagaata attacgagag tcgttgggaa atttcaaagg 101 cttttaaaag acaaatccgt aaaaaaagat ttgATTGAta ttttgctaat 151 taattgaccc tcTATATATA tattcacact catgtcaatc acttattttc 201 AAAGAAAATA AACAAATCCG TGGTTTTCTT TTCATTTCTT AAGATTTTAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01237 Mean Expected Number 0.002 +strand -41 : -32 CTCTATATAT Totally 1 motifs of 1 different REs have been found Description of REs found 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transferase family protein |LOCUS: AT1G65450 |PROD: the same as GENE |24321527..24322727 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +171 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.35 C - 0.14 1 attatatatg attgtaacat aaatctactt gttacgcgta aaattaaaac 51 gctggttttc tttgttgctc atttattgaa tcctaccaaa catatagcaa 101 tctaaattaa tgtgacataa ctgtctgtta tatactgcca aatcatgtaa 151 tcattttgta aagaaaatta TATAAACCat atacatatta cttgatagtt 201 AATGAACGTA TAAAGTAGGA TTTCATAATG CAACGTCTAA TAGCTAGAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01136 Mean Expected Number 0.010 -strand -84 : -90 TGTCACA Totally 1 motifs of 1 different REs have been found Description of REs found 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: isocitrate dehydrogenase |LOCUS: AT1G65930 |PROD: the same as GENE |24542587..24545790 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.29 C - 0.20 1 ccaaacttta ttctataaat taaaacttag cattcatatt gttgaatatg 51 acttttgaat tttgttagtg ggaccctttt atacaataag tggcggctac 101 aacgaaaaat caaagtaggg accaaaatga tacaaatcgt aataacgggg 151 tcaaaataac ataatccaaa ctTTTAAATA gcataaatac aacaactctc 201 AAGACCTGTA CAAGCTATTT CACCTACTTC ATCACTCATC ACCAGCTTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 -strand -103 : -109 AGCCGCC AC RSP00397 Mean Expected Number 0.000 +strand -112 : -105 AGTGGCGG AC RSP00438 Mean Expected Number 0.003 +strand -109 : -104 GGCGGC AC RSP00550 Mean Expected Number 0.008 -strand -33 : -43 TGGATTATGTt AC RSP00654 Mean Expected Number 0.007 +strand +21 : +30 CACCtACTTC AC RSP00807 Mean Expected Number 0.003 -strand -104 : -109 GCCGCC Totally 6 motifs of 6 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: TPX2 |LOCUS: AT1G65970 |PROD: peroxiredoxin type 2, putative |complement(24560479..24561952) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.39 C - 0.15 1 aaacaaaatg ttgtattttt ggaaaaaaaa gtttattttt agatattggt 51 tctagatttt acatccaatt tttgttttaa tcataatttt agaaattcta 101 ttatattttt tatggtcaaa ctaaaattag aaatctatta atgatttaca 151 tcattccgta aagcacTATA AATTgtccta aggcctaaat acattttcgc 201 ACTCAAGTCA AACAAAACTC TTCTATTTTC CTCTGTCTTC AAAACCACAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.006 +strand -87 : -81 GGTCAAA Totally 1 motifs of 1 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: translation initiation factor-related |LOCUS: AT1G66070 |PROD: the same as GENE |complement(24599549..24602181) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +998 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.21 T - 0.22 C - 0.17 1 aaaaaaaaat gattaaaaac ggaataaaaa aatggagagt gtaagatgga 51 aaaagttaca tgttggggcc acggtgatcg gttcgaccgt atcagtctaa 101 ccgaaATTGA ccaaacaact ttggtctata ctttgatcgg ttcgacatgt 151 tggggccacg gtggaaaggc ttTATAAAAA ggcataaaat ctaacgaaaa 201 ACAAAAGGAA ACACACAAAA GCCCTAAATC TCTTTTTAAC CTCTGAAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 -strand +38 : +29 tAAAAAGAGA AC RSP00467 Mean Expected Number 0.004 -strand -88 : -97 TGGTCAATTt AC RSP00468 Mean Expected Number 0.002 -strand -87 : -97 TTGGTCAATTt AC RSP00979 Mean Expected Number 0.008 +strand -90 : -81 CCAaACAACT AC RSP01482 Mean Expected Number 0.002 +strand -97 : -87 aAATTGACCAA Totally 5 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: U-box domain-containing protein |LOCUS: AT1G66160 |PROD: the same as GENE |24640859..24642271 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +22 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.36 C - 0.20 1 ataatatgac ataaaccttc attaattcaa aaatcatttt tcccgtgata 51 tgtttttttt ttcttttacc taaaaattaa ctttgaccca ctcgcgttcg 101 agaagcgtat gataacgact aatttaaaat gcatacattt tattatctct 151 atattcacat ccatacataT ATAAATCtct catccccact tgtgttctcc 201 ATTAGTAATA AACGGTCAAA GAATGGGACT TTCATTGAGA GTGAGACGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.008 +strand +14 : +20 GGTCAAA AC RSP00522 Mean Expected Number 0.009 +strand -15 : -9 CCACTTG AC RSP00773 Mean Expected Number 0.005 -strand -172 : -181 TGAATTAATG AC RSP00778 Mean Expected Number 0.006 -strand -172 : -181 TGAATTAATG AC RSP01013 Mean Expected Number 0.010 -strand +5 : -5 CtAATGGAGA AC RSP01463 Mean Expected Number 0.005 -strand -25 : -37 ATTTATATATgTA Totally 6 motifs of 6 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: aspartyl protease family protein |LOCUS: AT1G66180 |PROD: the same as GENE |24650851..24652476 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.07 T - 0.31 C - 0.21 1 cccttcaaat gtaacccttg gcttagattt atttttgtca attactataa 51 acttactgta aattacatac aaccttaaaa tctccaaaat gaaactattg 101 accaaaaaaa aaaaaaaaaa attttaataa acctgaaaat taagtaagaa 151 aacgtgtatg ttaagtgTAT ATATAttaca gtcaccttcc attactctcc 201 ATCATCTCTC TCACTTCCAC AAAACTCAAA AAAATGTCTC CCATTCCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00307 Mean Expected Number 0.005 -strand -179 : -184 GCCAAG AC RSP00548 Mean Expected Number 0.000 +strand -190 : -180 GTAACCcTTGG AC RSP01093 Mean Expected Number 0.001 -strand -174 : -184 TCTAAGCcAAG AC RSP01642 Mean Expected Number 0.005 +strand +32 : +41 AAATGTCTCC AC RSP01762 Mean Expected Number 0.005 -strand -180 : -185 CCAAGG Totally 5 motifs of 5 different REs have been found Description of REs found 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L10 (RPL10C) |LOCUS: AT1G66580 |PROD: the same as GENE |24842828..24844275 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.29 C - 0.20 1 tgttcttcgt tcttctttga ctttgactaa aaataaaaat aaacctcggc 51 ctaagaaaat agcgtgttca cattggatga ttaaggcctg gaccgagtat 101 caaataatat ctaaatgggc ctagctaagc agttacgtaa gctaaattta 151 gggtttgttt ttgccgcacc TATAAAATaa caacacagct tcccatttgt 201 AATTTCTAGG GTTTTGCAAA ACCAACACCG AAGATCCAAC ACGATGGGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.002 +strand -41 : -34 TTTGCCGC AC RSP00279 Mean Expected Number 0.001 +strand -53 : -45 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -45 : -53 AAACCCTAA AC RSP00646 Mean Expected Number 0.000 -strand +6 : -8 GAAATTAcAAATGG AC RSP00716 Mean Expected Number 0.002 +strand +17 : +25 CAAAACCAA AC RSP01303 Mean Expected Number 0.003 -strand -44 : -53 cAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G66700 |PROD: the same as GENE |complement(24876954..24878409) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.33 C - 0.16 1 aatgccgtca cttataattt gtcatataag caacgtttgt tgaccgcatt 51 cagcttcata tagtaagaag ctgccttttt ttaattggac gacgttccat 101 atatttaatt tattctcatt acagtaaATT GTtttttaag aacacggaat 151 attacTATAT ATAagcatcg agaggtccat ggattatcac tactctcatc 201 ATAAACCAAA GTATCAAACA ATAAAAGATT TTTGAGAAAA AAGAGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand +37 : +46 AAAAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +42 : +50 AGAGAGAGA AC RSP01678 Mean Expected Number 0.009 +strand +19 : +30 CAATAAAAgATT Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G66850 |PROD: the same as GENE |24940621..24941097 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.29 C - 0.17 1 caaaaaaaaa aaaaaaaatt aataagccct aatttaatac gtgtgtcact 51 attacttaat acttattttc gactaagttc tttttgcatg acgactagtt 101 acgttcacgt tatttaacat tcaagataca tgcattttgc gttatggaat 151 gcaatgcgaa acccaaacat AATAAATAct aaaacaagac ctcaaagaaa 201 AATATAGAAT ATAACCATAT TCCGGACATG AAGATCGTGA CATTGGTACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.007 -strand -111 : -117 CATGCAA AC RSP00114 Mean Expected Number 0.005 -strand -103 : -112 CTaGTCGTCA AC RSP00404 Mean Expected Number 0.005 +strand -65 : -59 TTTGCGT AC RSP00985 Mean Expected Number 0.004 +strand -104 : -95 AGTTAcGTTC AC RSP01288 Mean Expected Number 0.003 +strand -164 : -157 ATACGTGT AC RSP01702 Mean Expected Number 0.006 -strand -156 : -165 cACACGTATT Totally 6 motifs of 6 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67050 |PROD: the same as GENE |complement(25032290..25033451) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.25 G - 0.06 T - 0.44 C - 0.25 1 cttttttggc ccatgcatgt gaatatgttg caagcgacac gcttctctgt 51 cccctctttt attaacccat tttattcttc cttttttctc tttttcacaa 101 aaACAATtct aacaattcat tttattgttt ctccttttta ttccaaaaaa 151 taaattttgt aaaatcaccT ATAAAAAtaa ttaaattcac cttcttcctc 201 AAAATTCTCT CTTTCTCTCT TCTTCGAAAT TCTTCCTCCT CTTTTTCTGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.001 +strand -189 : -182 CATGCATG AC RSP00108 Mean Expected Number 0.001 -strand -182 : -189 CATGCATG AC RSP00117 Mean Expected Number 0.001 -strand -19 : -31 AATTATTTTTAtA AC RSP00140 Mean Expected Number 0.001 -strand -19 : -31 AATTATTTTTATa AC RSP00143 Mean Expected Number 0.000 -strand -156 : -165 GAaGCGTGTC AC RSP00709 Mean Expected Number 0.005 -strand -18 : -26 TAATTATTT AC RSP01470 Mean Expected Number 0.006 +strand -190 : -181 cCATGCATGT Totally 7 motifs of 6 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67080 |PROD: the same as GENE |complement(25048888..25050523) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +179 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.13 T - 0.28 C - 0.11 1 atatatcatt gattgaagta aaccaaaaat gttacttaaa tctactaatt 51 gatccatatt aaattagaag ttaattaaat aaacaaacaa aatccaaata 101 attataataa actaaaccgg aattcaaagt ttaaacaaat ATTGAagtaa 151 aaaagatgaa aacttTATAA AGAtggaagg atgagcaaaa agtgttgtat 201 ATAATTGTCG ACACTGAGCA AAGAAAGAGT GAAAGACAAC TTTTTTCCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01056 Mean Expected Number 0.003 +strand -173 : -163 AATGTTACTTa Totally 1 motifs of 1 different REs have been found Description of REs found 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: remorin family protein, contains Pfam domain |LOCUS: AT1G67590 |PROD: the same as GENE |complement(25336721..25338310) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +175 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.29 C - 0.19 1 ccccacgtac acatgattaa tctaagcttt taacacaaac cagatctgag 51 cattctaata aaaacattaa tttaaagtaa aaaaacaaaa aatagtgggt 101 ctataTCAAT ttatgctatt tagatagaaa aaaacatagt gataattaga 151 gagtTATAAA GAcactatca ttctcgtctc tacaacaacc catctggaca 201 TTAATGTCAC ATTTCTGAAA TCTCTCAACT TCATCATCAA GTGGGTTCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.003 +strand -199 : -190 cCCACGTACA AC RSP00072 Mean Expected Number 0.009 -strand -191 : -197 GTACGTG AC RSP00075 Mean Expected Number 0.002 -strand -191 : -200 GTACGTGGgG AC RSP00145 Mean Expected Number 0.010 -strand +47 : +42 AACCCA AC RSP00522 Mean Expected Number 0.003 -strand +44 : +38 CCACTTG AC RSP00857 Mean Expected Number 0.007 +strand -11 : -2 CCATCTGgAC AC RSP01276 Mean Expected Number 0.002 -strand -191 : -198 GTACGTGG Totally 7 motifs of 7 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 141. Group TF: SEF3 /AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 2 /TF: SEF3 ||Identical REs AC: RSP00338 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pectate lyase family protein |LOCUS: AT1G67750 |PROD: the same as GENE |25405251..25407151 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.25 C - 0.22 1 ggatcatctg aatgaaccgt tttttgcact aaacgaacat caaaactcat 51 ctccatccag atgatccatc tgaatgatga aacgaacaga gccttaatag 101 aatctgaaaa gagtgggtcc TCAATaatta aaaaccaaga attcaagggg 151 atgggacttt tccTATAAAG Aagccaaagc ctttctcacc attttctctc 201 ATCACCAAAC AAACAAACAC ATTCAAATCT CATAAACACA TTGATAAGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.001 -strand -176 : -187 AAAAAACGGTTc AC RSP00440 Mean Expected Number 0.000 +strand -47 : -39 GGACTTTTC AC RSP00857 Mean Expected Number 0.010 +strand -135 : -126 CCATCTGAAt Totally 3 motifs of 3 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67920 |PROD: the same as GENE |25477207..25477803 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +187 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.26 C - 0.20 1 tggtctctca acggtcaaaa accgacgatt tctccaattt ccagtaaaaa 51 tcttattaaa caaaaggtca aatcgaaaga taaacgtaag cgactcgtca 101 caaatgtttc aacgttaccg acacgtaacc aaaactcacc gaacaccgtc 151 ctccacgttt gttTATAAAA Tgagagatag ataaatatag agagagtcgt 201 CTCTTTGTAT AATATATGAT CTGAAAAAGA AAAAAAAACT CTTTAGCTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.007 -strand -38 : -44 AACAAAC AC RSP00070 Mean Expected Number 0.003 -strand -74 : -81 TACGTGTC AC RSP01035 Mean Expected Number 0.009 -strand -75 : -81 ACGTGTC AC RSP01261 Mean Expected Number 0.009 -strand -73 : -80 TTACGTGT AC RSP01734 Mean Expected Number 0.008 +strand -49 : -43 TCCACGT Totally 5 motifs of 5 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: IAR1 |LOCUS: AT1G68100 |PROD: IAA-alanine resistance protein 1, putative |25524867..25527838 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.16 1 gatgcataaa atttaacgga taacattttt taggatccga tagatatctc 51 tatgtttcat gattatcatc aacataaaga cttttataag agttgtgtag 101 agtctgtagc ctagtaaaag ggggttttcg acttaatttc gaaACAATgg 151 gccaaaacta caaatTATAA AAAgatctcc taaggtttat tactttcccc 201 AAATGGATGT TGTCACTTTC GGAATCATAA TCGGAATTAT CATTCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01105 Mean Expected Number 0.009 -strand -77 : -82 CCCCCT AC RSP01711 Mean Expected Number 0.008 +strand -90 : -81 CTAGTAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68340 |PROD: the same as GENE |complement(25617860..25619066) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.22 C - 0.23 1 acggctaaaa taagaagtca aaaaacaatc gaacggttat taatcaatct 51 catcactcaa accgacatct caaaacctat gcgccaagaa ctcagcgcag 101 tttagcaact ctcacaaaac ttataatatc cccaaaatac ccttctatgt 151 taaaaacggc acttcgtaTA TAAACAaaaa ctctttctgc tccgtttctc 201 ACAAGCGAAA AGAAAAAAGT TAAACGAAGA AGACGAAAGA GAGAAAATTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68680 |PROD: the same as GENE |25789169..25790587 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.32 C - 0.18 1 tattggaatc cctaatacat ggctcactct ctttgattca aacataaact 51 gcactcgttt atttaatctt tgtttgacag ctaaaaagat ttttattttc 101 gggttgataa acctataact cctccaacgg acaaaattta ctagatagat 151 ctataacttt tcgtgggcTA TATATAactt ctcgtgggct tcgaggccca 201 AAAATGTTTA AAAGTGTTGA AAACCAAGAC AAAAAAAAAT GGAGTGAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.004 +strand -115 : -104 AAgATTTTTATT AC RSP00304 Mean Expected Number 0.004 +strand -126 : -119 TGACAGCT AC RSP01064 Mean Expected Number 0.000 +strand -60 : -49 CTaGATAGATCT AC RSP01223 Mean Expected Number 0.000 -strand -71 : -79 CCGTTGGAG Totally 4 motifs of 4 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 983. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01064//OS: Arabidopsis thaliana /GENE: SEX1/RE: Fungus RE /TF: homeodomain TF 1129. Group TF: C-myb /AC: RSP01223//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: C-myb motif /TF: C-myb ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RAV2 |LOCUS: AT1G68840 |PROD: |25883990..25885399 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.08 T - 0.35 C - 0.22 1 agcgttgacc ctacctttcc atttttaaaa tgttctctca ttttgaccca 51 tttttttcca taaaccaatc aaattttaac tttcaaaaac ataaaactaa 101 ttagatataa aataataaca tgtacatgca cttgcctcgt ccattcctca 151 catcatcata tgtctttgTA TATATAtaga tgaaccaaag aaatgaaaaa 201 GTAACAACGT CACCTAAATC TCTCTCACCC AATTTGTGTT TCTTCTTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.009 +strand -76 : -70 CATGCAC AC RSP00021 Mean Expected Number 0.003 +strand -5 : +7 AAAAAGTAAcAA AC RSP00915 Mean Expected Number 0.009 -strand -44 : -53 GATGATGTGa AC RSP00916 Mean Expected Number 0.005 -strand -44 : -53 GATGAtGTGA AC RSP01237 Mean Expected Number 0.008 -strand -20 : -29 aTCTATATAT AC RSP01237 Mean Expected Number 0.008 -strand -22 : -31 CTaTATATAT Totally 6 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68875 |PROD: the same as GENE |25895749..25896461 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.29 C - 0.21 1 ggacgggatc aatatgtggt gtcatgataa tgaaattact tgaagacaac 51 aatatcctat aaaacgttac cacgacacct ttatttccaa aacaaatgct 101 ccttacATTG Cccagctttt tctgctctta ttcctgacta atgacaaaag 151 catgacacca gtttcacaac TATATATAtt tgtgatctct ctaagccttc 201 AACTATTTAA AACCAAAAGA AGCAAAAATG ACAGAACTCA AATGGATATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.006 -strand -195 : -200 CCGTCC AC RSP01013 Mean Expected Number 0.005 +strand +39 : +48 CAAATGGAtA Totally 2 motifs of 2 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RPL34 |LOCUS: AT1G69620 |PROD: 60S ribosomal protein L34 (RPL34B) |26193501..26194986 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.26 C - 0.17 1 aagaaaagac aaacgttcga aagatgggcc tttgggccaa gtcatatttg 51 gattattatg taagcattaa caagcccata aaatgtcgtc cattgatgat 101 cataagTCAA Tatgtaatct gaaccgtccg atctagggct ttaggtgttg 151 aagtgaaaaa agaccctaTA TAAAGAtaat atagcttata aagtctcttc 201 TCTGCTCCGT CAAGCTGAGG AGGATAAAAA CCCTAGGGTG AGTGAGACAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.005 -strand -38 : -49 TCTTTTTTcACT AC RSP00917 Mean Expected Number 0.004 +strand -54 : -45 GTTGAAGTGA AC RSP01505 Mean Expected Number 0.000 -strand -68 : -76 GATCGGACG Totally 3 motifs of 3 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69760 |PROD: the same as GENE |complement(26242923..26244371) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.33 C - 0.24 1 aattgtagac catgtattta aattttgcct ccgggttatg cgaaaaaagg 51 aaaaagcatt cacatgtctc tctcctgaca tgcacgaacc aactaataac 101 ttcttattat actaatcacg ttattatctt attaaaaaat aaacccattt 151 tgaccacaac ctttctctaT ATAAACAttt tagtctcctc ctctctcttt 201 ATAACCACAA CGATTTTCTC TCTCTCACGA TTTAAAAAGC TAAACAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.006 -strand +9 : -3 TGTGGTTATAaA AC RSP00653 Mean Expected Number 0.007 +strand -135 : -125 gTCTCTCTCCT AC RSP00864 Mean Expected Number 0.003 -strand +25 : +17 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand -126 : -134 GGAGAGAGA AC RSP01033 Mean Expected Number 0.003 -strand -151 : -160 CCTTTTTTCG AC RSP01469 Mean Expected Number 0.006 +strand -141 : -132 TCACATGTcT AC RSP01470 Mean Expected Number 0.006 -strand -114 : -123 TCgTGCATGT AC RSP01612 Mean Expected Number 0.000 +strand -9 : +5 TCTCTCTTTATAAc Totally 8 motifs of 8 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1432. Group TF: GmDof4 /AC: RSP01612//OS: Glycine max /GENE: Synthetic OLIGO/RE: CRA1-2 /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATHB13 |LOCUS: AT1G69780 |PROD: |26262602..26264414 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +227 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.39 C - 0.17 1 tgaagataaa attggagtta ataattatat atactttggc ttaacgtaaa 51 tgaagtttaa gcttgtattt gatcgtgtta tttttatttt ttttaacgag 101 agaaTCAATt gagtgcgtct ctttctcttc tcagctcata tgtcctctct 151 ctctctctct cagcctttct aTATAAAACg aaataaagaa gaaattaaat 201 ACCAGAAGTG GTATAGTCTA GGCCGATACA TTTCACTATC TCTCTCTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 -strand -75 : -83 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +49 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -41 : -49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -43 : -51 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -45 : -53 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -47 : -55 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -40 : -56 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -42 : -58 GAGAGAGAGAGAGAGgA Totally 9 motifs of 3 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G69870 |PROD: the same as GENE |26319690..26323883 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.28 C - 0.23 1 atacgtggaa caaaacaata atgttacgta cggtgtaaga aaaacaaaaa 51 aaacatagca ctaaaatagt tttcttttaa ttttcctctt caaacttctc 101 acgtggaggc tactagtggc gaacgtcatt caaatttacc cacacccacc 151 atatattatc tactcactcc ctTATATATA cacacttcca caaataattc 201 ACTACACCCA AAAAAGCTTC TAACAAAGAG AAAGTGTCTG TATGTTGTGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00454 Mean Expected Number 0.002 -strand -171 : -181 TACGTAACATt AC RSP00640 Mean Expected Number 0.001 +strand -102 : -95 TCACGTGG AC RSP01654 Mean Expected Number 0.009 -strand -71 : -80 AATGACGTTC AC RSP01734 Mean Expected Number 0.004 -strand -94 : -100 TCCACGT AC RSP01734 Mean Expected Number 0.004 -strand -192 : -198 TCCACGT Totally 5 motifs of 4 different REs have been found Description of REs found 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69890 |PROD: the same as GENE |complement(26326774..26328267) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.26 C - 0.21 1 gaaaaacaaa atttggtgaa acacgtcaat taagcacgac ttttccatgg 51 ctagtggcta agatcgtttc atcacatggc tatatcatat aatacttgga 101 tgaattcaaa ataaacgact gagaaaatgt ccacgtcacg gcgcaccgct 151 ttggacttaa gtctcctatA ATAAATAcaa caccaaacat tgcattccac 201 ATTAATTCGT CTTGTGCAAA AAAAGACACT TCTTAAGCTT CAACAAGAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.004 +strand -71 : -62 TCCACGTCaC AC RSP00214 Mean Expected Number 0.003 -strand -63 : -70 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -70 : -63 CCACGTCA AC RSP00233 Mean Expected Number 0.006 +strand -71 : -62 TCcACGTCAC AC RSP00868 Mean Expected Number 0.008 -strand -107 : -118 TATTATATgATA AC RSP01258 Mean Expected Number 0.005 -strand -173 : -180 TGACGTGT AC RSP01275 Mean Expected Number 0.004 +strand -71 : -62 TCCACGTCAc AC RSP01734 Mean Expected Number 0.009 +strand -71 : -65 TCCACGT Totally 8 motifs of 8 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: carbonic anhydrase |LOCUS: AT1G70410 |PROD: the same as GENE |complement(26537589..26541898) |SUPPORT | 10 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +778 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.29 C - 0.25 1 aacaaataaa aagaaaaaac atggaagaag aagaagaaga agaagtccag 51 cttcactcac ctttcgcttt ctctatccca taacagaaac ccccacattg 101 ctcgaacggt cgtcataatt ccttgaaacc tcgaaaatcc aaaaacccat 151 atccaatctt cttcccaTAT AAATTaagat ttttatttat ttatttgttt 201 ACTTATTTCA ATTCCCAAAA TCCTCTGCCT CATCATCTTC AAACTGTTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.003 +strand -25 : -14 AAgATTTTTATT AC RSP00629 Mean Expected Number 0.007 -strand -17 : -24 AAAAATCT Totally 2 motifs of 2 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ADP-ribosylation factor, putative |LOCUS: AT1G70490 |PROD: the same as GENE |complement(26567590..26569471) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +656 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.31 C - 0.24 1 agcacttaag aaaagagtat tgctcacgtg ttaagtttta attggttagc 51 tcgcgaacac ctgcacactt ggtcatagaa gattcgaaga gggtaattcc 101 gTCAATtaca aatggcaatt tcgttaattg gcgtgagaaa cgacgaataa 151 accggtaccc ctctccctTA TAAAATtgct ctccaccact tcccatttcg 201 GCGTCATCGC GTTTCTCTTA AGCTTCTCTC ACATTTCTCT TTCAAATTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00978 Mean Expected Number 0.003 +strand -178 : -169 cTCACGTGTT Totally 1 motifs of 1 different REs have been found Description of REs found 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G70540 |PROD: the same as GENE |26597593..26598305 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.31 C - 0.20 1 agcaaaaata aaaataagaa ggaaataacc catcattagg cctaattaac 51 caaggaacta aatttgatat gtctctctaa ttattcaccg gcgacaattt 101 ATTGAaactc ttttcctcaa aagaacttac taaaattacc cattttttct 151 tttagcgtat gcattatTAT AAATAacaac caccctctat ttgttcaaat 201 AATCAACAAC CGGTGTTCAA ATACCACGCA ATTTTACATA AAAATGTCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00881 Mean Expected Number 0.001 +strand +2 : +11 ATCAACAACC AC RSP00889 Mean Expected Number 0.006 +strand +24 : +30 CCACGCA AC RSP01640 Mean Expected Number 0.004 +strand -134 : -125 aTATGTCTCT AC RSP01642 Mean Expected Number 0.005 +strand +42 : +51 AAATGTCTaC AC RSP01755 Mean Expected Number 0.005 +strand -24 : -17 CAACCACC Totally 5 motifs of 5 different REs have been found Description of REs found 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L27A (RPL27aC) |LOCUS: AT1G70600 |PROD: the same as GENE |complement(26624586..26625322) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.25 T - 0.22 C - 0.20 1 gcgcgtcaga aaggcgcgtg aaggttcaat catgtggttg tggtagatga 51 tctctcttcc ccctctacga tataatcggg cctaaaggcc catctcgcgt 101 tataactaaa tagcccaaaa tgtcgtaaac cctagagggt aaaataggaa 151 acgtaaaaat ccttatcgtc ttTATAAACT cagtgatatc ttaagaaacc 201 CTAGCCGCAA AGAGAGAAAG GGAGGGAGGA GAGTGTAGCA GATCGGCGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01086 Mean Expected Number 0.001 -strand -44 : -53 TTTACGTTTC AC RSP01438 Mean Expected Number 0.000 +strand -10 : +3 TTAAGAaACCCTA AC RSP01475 Mean Expected Number 0.001 +strand -86 : -78 CCAAAATGT AC RSP01499 Mean Expected Number 0.002 +strand -144 : -135 TTCCCCcTCT Totally 4 motifs of 4 different REs have been found Description of REs found 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1311. Group RE: 13 bp RE /AC: RSP01438//OS: Agrobacterium rhizogenes /GENE: rolC/RE: 13 bp RE /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: caleosin-related family protein |LOCUS: AT1G70670 |PROD: the same as GENE |26648245..26649784 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +248 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.32 C - 0.12 1 gcaattttta actaatagaa acacatgaaa aattacaagt tgtatattaa 51 attactgata cgttaaaatt aaattttagg agtaacgaat aatgagaatt 101 cttattttat tttttatttt attaaaacga ggaaagtatc agccaaagca 151 aacgtggtgg gtgaatgata agTATAAAAG atgtctaaag cttcccactc 201 ATTTTCTTGT CTTCGTATAG AATCAAAAAA AAAGTAACGA CGATGCAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01091 Mean Expected Number 0.001 +strand +17 : +27 ATAGAATCAAA Totally 1 motifs of 1 different REs have been found Description of REs found 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: caleosin-related family protein |LOCUS: AT1G70680 |PROD: the same as GENE |26650883..26652397 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.18 1 gaatgtatat cactaatttt gtacaaacaa ggactaatca ggcccaatat 51 gttcatatct agattcagta accttctcag tcttgcacga tatgtacact 101 tttgtttttg tttattacac gatatgttta cttagataat gacttattat 151 aatatacaga acaactgtaT ATAAATAtat cgaccgcacg agatcgaatc 201 GAGTATTTAT CACATTAATT ATTATCATAC AATAACAGCG TTTCACCATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 +strand -106 : -96 TACACTTTTGt AC RSP00999 Mean Expected Number 0.004 -strand -59 : -69 TCAtTATCTAA AC RSP01621 Mean Expected Number 0.001 +strand -106 : -97 TACACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G70720 |PROD: the same as GENE |26670070..26670866 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.33 C - 0.22 1 aaactaactt cttttctttt catatgataa gttctaagat tggaattcgg 51 cccggcccac taaacattca tgcagacaat tgttggcaga gtatttttgt 101 tcacctccaa actcaactct ctaattttgt ttctttataa aatctgatat 151 ttttcaaaaa tccTATAAAT Aactccaagg cttatgaatc caaaagagcc 201 AAACACATCA CACAACAATA TGGTAACAAT GATGAGACCT ACTCTCCTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00850 Mean Expected Number 0.009 -strand -114 : -119 GCCAAC AC RSP01017 Mean Expected Number 0.008 -strand -67 : -74 AGAAACAA AC RSP01296 Mean Expected Number 0.008 +strand -38 : -30 CTATAAATA Totally 3 motifs of 3 different REs have been found Description of REs found 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: multi-copper oxidase type I family protein |LOCUS: AT1G71040 |PROD: the same as GENE |complement(26800628..26803984) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.27 C - 0.21 1 tgtcatgtac atataatatt caaattctag ttttataatg tagaagctta 51 ctaattaaaa aaaaaaccat tcctttttgg aagataaatt ctaggaaagt 101 agcgacTCAA Tagtcaagag aatgaaagca aagaacaaca aagttatttg 151 acaccacaca ctcgtatgCA TAAATAcgca aaaccccaaa gaacttcttc 201 AACTTCTCTC CTCAACTTTT AAGTATTCCA CACATACAAA CACACACACA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl hydrolase family 9 protein |LOCUS: AT1G71380 |PROD: the same as GENE |complement(26903446..26905451) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.20 1 agaaaaggat ttggttaagc aatattaagg tatgaactaa cctaaaccat 51 aaaatagtaa aaaaggagga ttaaggttac tttgtttagg agcagcacgt 101 tgataaccaa aaagccataa ttatcgcttc cttcagcgca ggatccttct 151 ctctcctatc tctctgTATA TATAtgtgga ccttcacgta atagcttcgt 201 ACTTCAAACC TCAAAAGCAA TTTAGCTCTC TGTCTTCAAG ATGACTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 +strand -149 : -138 AAAtAGTAAAAA AC RSP00653 Mean Expected Number 0.002 +strand -54 : -44 TTCTCTCTCCT AC RSP00865 Mean Expected Number 0.001 -strand -45 : -53 GGAGAGAGA AC RSP00866 Mean Expected Number 0.001 +strand -106 : -99 GCACGTTG AC RSP01056 Mean Expected Number 0.003 +strand -128 : -118 AAgGTTACTTT AC RSP01103 Mean Expected Number 0.007 +strand +6 : +13 AAACCTCA AC RSP01176 Mean Expected Number 0.001 -strand -104 : -114 tGCTGCTCCTA AC RSP01636 Mean Expected Number 0.002 +strand +10 : +20 CTCAAAAGCAA Totally 8 motifs of 8 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1087. Group TF: Zmhox1a /AC: RSP01176//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 3 /TF: Zmhox1a 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: peroxidase 12 (PER12) (P12) (PRXR6) |LOCUS: AT1G71695 |PROD: the same as GENE |26967967..26970350 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.14 T - 0.25 C - 0.15 1 ttggatattt tttttccttt ttgaaaagca aagaaatata ctctccttta 51 atcacaataa atatatagaa ggaaaagact tcagtattcc tttgcctttt 101 aacataagaa aaatatatat acttaaaaga tagaaataag acacacaagg 151 actgaaggac caaaattgcc TATAAAAGca aagtccatct attccacaag 201 AACAAGAAAA GGCAGAGAAG AGAGAGGCTC TGATAAAAAA AAAAACAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.005 +strand -35 : -20 TTGCCTATAAAaGCAA AC RSP00080 Mean Expected Number 0.005 -strand -20 : -35 TTGCtTTTATAGGCAA AC RSP00755 Mean Expected Number 0.009 -strand -110 : -116 AGGAATA Totally 3 motifs of 2 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 717. Group RE: submotif A /AC: RSP00755//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif A /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G71780 |PROD: the same as GENE |complement(26998748..27000312) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.29 C - 0.20 1 gagaaaaaaa acacttctcc tctgagaaga cgaactaaaa ggtaacaacc 51 gaataaccaa tctcttattg tctattatac cctttaggcc catcataagg 101 cccaaacatt acgaggcctt ttactaagcg acgtcgttat gaacagaata 151 tttatttttt gctttcctgg gatTATAAAT Ctttttttcc atcggacggt 201 GAATTGTTAG TCATGTCATC GATGACGGAG AAGGAGAAGG AGAGAGATCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.004 +strand -146 : -137 AACCAATCtC AC RSP00447 Mean Expected Number 0.004 -strand -33 : -42 AGgAAAGCAA AC RSP00460 Mean Expected Number 0.005 +strand +10 : +19 GtCATGTCAT AC RSP00653 Mean Expected Number 0.003 -strand +48 : +38 aTCTCTCTCCT AC RSP00865 Mean Expected Number 0.001 +strand +39 : +47 GGAGAGAGA AC RSP00913 Mean Expected Number 0.003 -strand +20 : +11 GATGACATGA AC RSP00916 Mean Expected Number 0.003 -strand +20 : +11 GATGACATGA Totally 7 motifs of 7 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G71950 |PROD: the same as GENE |complement(27083846..27085275) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.31 C - 0.15 1 aaaaaatatt ggctgattca ttttattttt taagttaaat gtcacattgt 51 aggcaaggta attacaaaaa tgagtggaat tataaaatta tctacatacc 101 gacatcattc aaccgtcaga ttatggatta accatttgag accgtccatt 151 tatgagtcgg TTTAAATTgt gacataaatg gaaaatgtca cctctcacgc 201 GTTATTGAAA AAAAATTCCC AGATTCTATA AAAAAGAGAA ATGCAAACAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.006 +strand -59 : -54 CCGTCC AC RSP00445 Mean Expected Number 0.003 +strand +30 : +39 AAAAAAGAGA AC RSP00749 Mean Expected Number 0.009 -strand -131 : -142 tTTTTGTAATTA AC RSP01009 Mean Expected Number 0.001 +strand -104 : -96 TACCGACAT AC RSP01010 Mean Expected Number 0.001 +strand -104 : -96 TACCGACAT AC RSP01068 Mean Expected Number 0.008 -strand -81 : -89 TCTGACGGT AC RSP01642 Mean Expected Number 0.004 +strand -18 : -9 AAATGTCaCC Totally 7 motifs of 7 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 934. Group TF: DREB1A; DREB2A /AC: RSP01009//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB1A/DREB2A BS /TF: DREB1A; DREB2A ||Identical REs AC: RSP01610 RSP01763 RSP01771 RSP01779 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G72290 |PROD: the same as GENE |27219451..27220453 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.26 C - 0.20 1 acgtgatgat ctgtttcccc ccatacttac gggatgatca gaatgtggca 51 tgaggaaaaa gccaagaaat aagttgataa atttaaggtt taatttaaca 101 aaaatgagag attaatcttt tcattttagg gtcgcacgcg gtgttttgtg 151 caaccgcaga aacttccTAT AAATAccgat acaatgtgca tgctttctac 201 AACTCAACTC ACTCAAACCA AAAAAAGAAA CATCAAACCC TAAAACACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.005 -strand -9 : -15 CATGCAC AC RSP00260 Mean Expected Number 0.007 +strand -76 : -70 TTTAGGG AC RSP00279 Mean Expected Number 0.004 -strand +43 : +35 TTAGGGTTT AC RSP00357 Mean Expected Number 0.006 +strand +5 : +12 CAACTCAC AC RSP00369 Mean Expected Number 0.004 +strand +35 : +43 AAACCCTAA AC RSP01209 Mean Expected Number 0.002 -strand +27 : +18 CTTTTTTTGG AC RSP01296 Mean Expected Number 0.006 +strand -34 : -26 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -34 : -25 CTATAAATAC AC RSP01303 Mean Expected Number 0.007 +strand +34 : +43 cAAACCCTAA Totally 9 motifs of 9 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: TIR |LOCUS: AT1G72930 |PROD: |27443113..27444125 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.33 C - 0.19 1 aatatgttat ccatactcat tatcttattt tggcggccca tctattctct 51 tccctctttc tgagtagttt agtgaaacag aagctgacaa gaaaaaatag 101 aaaatgccag gaaacacaca gttagcagta ggaagactct tataggtcaa 151 cttctgtagt ggtagtgccT ATAAATAtcc ttgagttttt tatttctatc 201 ACTCATTGAG AATCAAAAAT CAAAATGTCT TCTCATACTG CAACTAAGTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.009 -strand -2 : -12 ATAGAAATaAA AC RSP00438 Mean Expected Number 0.005 +strand -169 : -164 GGCGGC AC RSP00807 Mean Expected Number 0.005 -strand -164 : -169 GCCGCC AC RSP01032 Mean Expected Number 0.007 -strand -168 : -177 CCAAAATAAG AC RSP01209 Mean Expected Number 0.006 +strand -177 : -168 CTTATTTTGG AC RSP01296 Mean Expected Number 0.006 +strand -32 : -24 CTATAAATA AC RSP01642 Mean Expected Number 0.006 +strand +23 : +32 AAATGTCTtC Totally 7 motifs of 7 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, similar to phosphatase |LOCUS: AT1G73010 |PROD: the same as GENE |complement(27468233..27469917) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.33 C - 0.24 1 gatctctcta caagactcaa gtttgacccg taaacgtcat caaatccaac 51 ggttctcaga ataaaatcaa aagtattcta atttgttctt cttttttttg 101 ttaccttgaa ggtaatattc cattggcatc tccgataaaa tcccccATTG 151 Tttctctcca ttcattagTA TAAATAccta accacatttc tattctcctc 201 AATTCACAAA CCAACAAGAA CTCAAAGAGA GATCCATCAA TTAGAATCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.009 +strand +27 : +32 GAGAGA AC RSP00574 Mean Expected Number 0.008 +strand -144 : -137 CAGAATAA AC RSP00997 Mean Expected Number 0.007 -strand -160 : -169 GATGACGTTT AC RSP01017 Mean Expected Number 0.007 -strand -46 : -53 AGAAACAA AC RSP01091 Mean Expected Number 0.008 +strand -140 : -130 ATAaAATCAAA AC RSP01654 Mean Expected Number 0.008 -strand -160 : -169 GATGACGTTT Totally 6 motifs of 6 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: eukaryotic translation initiation factor-related |LOCUS: AT1G73180 |PROD: the same as GENE |27521577..27525290 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +419 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.30 C - 0.18 1 acaactcaaa gccgactctt tataaacaga tatgattctc taaggaaaaa 51 aacctaattt gaatcgaatt agcaagagat tcacctggta gaaacaatgc 101 agccgtactc cacacagaga actaaaaacc tctagcttat aaaaaaagct 151 gatttttttt ctctttggtT ATAAATAtac agtaaccttc tggtttacct 201 AGAGTATTCA AAAGGCTGAT GAAATTTAAG TTAGGGTATC TCTTTATACG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.010 -strand -44 : -51 AAAAATCA AC RSP01687 Mean Expected Number 0.009 -strand -187 : -193 CGGCTTT Totally 2 motifs of 2 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calcium-binding protein, putative |LOCUS: AT1G73630 |PROD: the same as GENE |27688397..27689114 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.53 G - 0.10 T - 0.20 C - 0.17 1 aaaataactc attcagaaat attattagca ggacaaaaaa tatcaaatat 51 taatggttaa taaaaatagg aataaatata aatagttaat taattaaaag 101 ccatgaaggg tagccataga aaaagcatca agcatctcaC CAATcaaaag 151 caaatgatca gaaaaactcT ATAAAAAcgt caaaaacaga aactcaaatc 201 ACAAAACAAA AAATGGCAAA CACAAATCTT GAATCCACCA ACAAATCCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00947 Mean Expected Number 0.006 +strand -146 : -140 GGTTAAT AC RSP01772 Mean Expected Number 0.006 +strand -151 : -145 TTAATGG Totally 2 motifs of 2 different REs have been found Description of REs found 876. Group TF: GT-2 /AC: RSP00947//OS: Oryza sativa /GENE: PHYA/RE: GT1-bx /TF: GT-2 1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G74055 |PROD: the same as GENE |27852891..27853473 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 tcacctgtaa gagtgcaatg gatcacatat atcatttata attagtttga 51 gacgcttttg atgaagctga tgaggatttc tccgctttat tcacctttac 101 atgtccttct tcaacaaacA TTGGtcggct taaaagctct tcaaaagatc 151 aatgtgcaca tgcctatgTA TATATAtact aatgaccccg ttactcaatc 201 AACAAATATT GAATCTTGAT CACCGAAAAC CAAAATTTCA TTAGATTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.009 -strand -72 : -77 GCCGAC AC RSP00535 Mean Expected Number 0.002 +strand -39 : -23 GCCT-- +7 bp --TATATA AC RSP00870 Mean Expected Number 0.009 +strand -195 : -186 TGTAAgAGTG AC RSP01092 Mean Expected Number 0.009 -strand +51 : +41 ATtGAATCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT1G74300 |PROD: the same as GENE |27938959..27940650 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.37 C - 0.21 1 aaattgtagc attgtaattc gacagcttaa catgtatctt tttcttttcc 51 ttttttggca accacacaat taaagtatca aatcactgca acatatttga 101 atttaattca tccctgaaAT TGAcgtggct gagaagactt gtcacaagcc 151 taagagccct tcttcatcTA TAAATAtact cttgttcagt gatgaaaact 201 TAATATAATT TGGTTTCTCC CCAAATTCTC CACTTGTTCA CTTAATCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -155 : -140 TTTCCTTTTTTGGCAA AC RSP00080 Mean Expected Number 0.004 -strand -140 : -155 TTGCCAAAAAAGGAAA AC RSP00113 Mean Expected Number 0.000 +strand -80 : -72 TGACGTGGC AC RSP00214 Mean Expected Number 0.000 +strand -80 : -73 TGACGTGG AC RSP00215 Mean Expected Number 0.000 -strand -73 : -80 CCACGTCA AC RSP00248 Mean Expected Number 0.001 -strand -72 : -81 GCCACGTCAa AC RSP00423 Mean Expected Number 0.010 +strand -79 : -74 GACGTG AC RSP00424 Mean Expected Number 0.010 -strand -74 : -79 CACGTC AC RSP01003 Mean Expected Number 0.008 +strand -135 : -126 ACAATTAAaG AC RSP01033 Mean Expected Number 0.007 +strand -152 : -143 CCTTTTTTGG AC RSP01034 Mean Expected Number 0.002 +strand -78 : -72 ACGTGGC AC RSP01214 Mean Expected Number 0.002 +strand -152 : -143 CCTTTTTTGG AC RSP01296 Mean Expected Number 0.006 +strand -33 : -25 CTATAAATA AC RSP01751 Mean Expected Number 0.002 +strand +29 : +37 TCCACTTGT AC RSP01776 Mean Expected Number 0.006 +strand -135 : -125 ACAATTAAAGt Totally 15 motifs of 14 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: bHLH family protein |LOCUS: AT1G74500 |PROD: the same as GENE |complement(28001837..28002482) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.37 C - 0.18 1 tttaaaatac gagattctct gaaatcgttc tattataaca aaagttgtca 51 ggagaggggg catataattc aatatttgaa aaataagatt cgcaatatat 101 ttttttctaa ctaaaataag aaaGCAATtt tatatatttt tcataaacaa 151 ataataaaaa gacctaCATA AATAcaaccg tcacttcact tgtttccttc 201 ATACTATCAA CTTTTCTCTA TCTATCTCTC TCTCTTCTTT TTCCGGCATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00431 Mean Expected Number 0.009 -strand -16 : -27 AGTGACGGTTGt AC RSP00593 Mean Expected Number 0.003 -strand -110 : -118 GAATCTTAT AC RSP00864 Mean Expected Number 0.002 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +33 : +25 AGAGAGAGA AC RSP01105 Mean Expected Number 0.001 -strand -141 : -146 CCCCCT Totally 5 motifs of 4 different REs have been found Description of REs found 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CYP98A8 |LOCUS: AT1G74540 |PROD: cytochrome P450, putative |28016970..28018710 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.30 C - 0.16 1 tgagaactaa agcacaagaa atagttttgg taagtaaaca gaaaatgcaa 51 aaagtgtgag agtattaagg ggccaaacca tggtattttc atgcgcatac 101 caaagttgtg tttctctaca cttacgtaag taaatatcaa aaactttctt 151 ctatgtttta cagtttgcgT ATAAAAActt cagtgtaagg tagatgttac 201 AATGTACATC AAACTTACAT CAATAACTGT TGTTTCACAT CGTCGAAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.008 +strand -121 : -114 ATGGTATT AC RSP00404 Mean Expected Number 0.010 +strand -37 : -31 TTTGCGT AC RSP00489 Mean Expected Number 0.008 -strand -165 : -174 TACtTACCAA AC RSP00756 Mean Expected Number 0.003 -strand -141 : -148 CTCACACT Totally 4 motifs of 4 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CYP98A9 |LOCUS: AT1G74550 |PROD: cytochrome P450, putative |28019706..28021523 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.31 C - 0.14 1 agaaagttca actaaaattt tcaatcaaat tagaaaatgc aaatagtgtg 51 agaaaagcaa aaagtgaacc aattcatgac aatttcatgc aaaattacgt 101 gttatctaaa cagcttattc cataaccgtg actaaaaata ataattcata 151 aatcatttaa tatttggtgT ATAAAAAagt atacttcatg aagaagcatc 201 AAACCTGTAT TTTATCAATT ACCACACTTT GTCTAAGCAA AATGGATTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.006 -strand +33 : +24 gACAAAGTGT AC RSP00756 Mean Expected Number 0.001 -strand -149 : -156 CTCACACT AC RSP00941 Mean Expected Number 0.008 +strand -182 : -175 TTTCAATC AC RSP01072 Mean Expected Number 0.009 +strand -107 : -98 ATTACGTGTT AC RSP01093 Mean Expected Number 0.004 +strand +32 : +42 TCTAAGCAAAa AC RSP01261 Mean Expected Number 0.002 +strand -106 : -99 TTACGTGT AC RSP01594 Mean Expected Number 0.008 -strand -175 : -182 GATTGAAA AC RSP01702 Mean Expected Number 0.006 -strand -98 : -107 AACACGTAaT Totally 8 motifs of 8 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myb family transcription factor |LOCUS: AT1G74840 |PROD: the same as GENE |complement(28119558..28121066) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.22 C - 0.22 1 cagccaatga ataaaaaaag tctatccaaa tgaaaactct gtagagagac 51 aggcaggtaa gaaaaaaata caagaacaga cgaataaaaa caaaacacgt 101 gtcatatggt accgtcacca acacctacaa catgtaatag tttaaaaagg 151 aaccacgtgg cttttggctT ATAAAAGggt ccccaaagaa gctcagatct 201 AACTCACACC ACTCCATTGC CCATTGCTCT GTGTACTTTG CTTCTTTAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -49 : -40 aCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -40 : -49 GCCACGTGGt AC RSP00153 Mean Expected Number 0.002 +strand -48 : -39 CCACGTGGCt AC RSP00175 Mean Expected Number 0.001 +strand -47 : -40 CACGTGGC AC RSP00524 Mean Expected Number 0.006 -strand -99 : -105 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -40 : -49 GCCACGTGGt AC RSP00718 Mean Expected Number 0.001 +strand -48 : -41 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -41 : -48 CCACGTGG AC RSP01034 Mean Expected Number 0.005 +strand -46 : -40 ACGTGGC AC RSP01035 Mean Expected Number 0.006 +strand -104 : -98 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -106 : -99 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -99 : -106 ACACGTGT Totally 12 motifs of 9 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ALDH10A8 |LOCUS: AT1G74920 |PROD: betaine-aldehyde dehydrogenase, putative |complement(28142686..28146405) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +171 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.42 C - 0.12 1 aaaaaagtga cgtttaaaga tctctaatcc ttttctaatt aactttgtgt 51 atgattttta gttcttctaa tttctatata tttttgttca taatatgaaa 101 atttgatctc tgttttaatt attttggaac taaatacaca tttttaatta 151 gattagtaaa agagtTATAA TTAaaaaaag ttgatctggt tggtgtcagc 201 AGAACAAGGA AAAAAGAGAG GCTTTTTCGT TTTGATCCTC CTACTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand +10 : +19 AAAAAAGAGA AC RSP00996 Mean Expected Number 0.005 +strand -21 : -12 GTTGATCTGG AC RSP01454 Mean Expected Number 0.007 -strand -7 : -13 ACCAACC AC RSP01654 Mean Expected Number 0.004 +strand -195 : -186 AGTGACGTTT Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G75110 |PROD: the same as GENE |complement(28197776..28199594) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.32 C - 0.13 1 gactgtagta tataaattat tataattttg ttaaccttgt aacatgattt 51 taaaaattag aacccactta tttatttctc tatcaggatg gtatgttaat 101 agaatgaact atagaacaga tcaacagaca gtaaatgaaa cttaaagaaa 151 aaaatacaaa tggctcaTAT AAAATgaact tgcagaaata cagtttgatc 201 ACAGAATAAG AGAGGGTTTA TCAATTTGGC TTCTGCGTCA TTTCGGCAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00996 Mean Expected Number 0.004 -strand -76 : -85 GTTGATCTGT Totally 1 motifs of 1 different REs have been found Description of REs found 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc knuckle (CCHC-type) family protein |LOCUS: AT1G75560 |PROD: the same as GENE |complement(28374802..28376902) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +524 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.31 C - 0.20 1 ggctttagat aaagctcaaa tttccacgtg aatctgtatt ttttttcttt 51 cttaaatcta aaatatctgc agacgtaaaa cccatgtaaa gttatagttc 101 agcccatgtt aaaagcccat gtaaagttat agcccacgta aaaaagccca 151 gcccaaagat aagttggGAT AAATAatatt gatgttctcg attgctcgcc 201 GGGATCGTAA GAACAGAGGA TTTTTCTCGG CCAAGTTTTC TCTAGCTCAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.008 -strand -72 : -81 TAACTTTaCA AC RSP00442 Mean Expected Number 0.008 -strand -107 : -116 TAACTTTaCA AC RSP00495 Mean Expected Number 0.007 +strand -116 : -109 TGTAAAGT AC RSP00495 Mean Expected Number 0.007 +strand -81 : -74 TGTAAAGT AC RSP00640 Mean Expected Number 0.002 -strand -170 : -177 TCACGTGG AC RSP00860 Mean Expected Number 0.002 -strand -149 : -157 AGAAAGAAA AC RSP01734 Mean Expected Number 0.010 +strand -178 : -172 TCCACGT Totally 7 motifs of 5 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin-responsive family protein |LOCUS: AT1G75590 |PROD: the same as GENE |complement(28386557..28387429) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.30 C - 0.24 1 cctctcttca aacaaaactg attgattaat ttccttaata tttaataatc 51 aaccaattac actaatcttt atttcattaa ggaaaagaat agagccaaag 101 taaggaccac ggaggtaatc tcgtaaatat ctcgaaaacc aatggcATTG 151 Tgttattcct tttactaTAT AAACCtcgtc cctccctaac tctcaaaatc 201 CCCCTGACAT TTTCTTTCTC TCACAAAGAA AACCAAATCA CTAAACCGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.003 -strand +19 : +11 AGAAAGAAA AC RSP01167 Mean Expected Number 0.008 +strand -77 : -69 TAAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl hydrolase family 9 protein |LOCUS: AT1G75680 |PROD: the same as GENE |complement(28420713..28423190) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +298 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.33 C - 0.15 1 atttagcaat ttattgtttt tttttatcat attatattta cttattaatg 51 tggacaacta attaaattat agagcgaccg acaattgtga cagtgacact 101 ggagttggac tcggcTCAAT ttaaaggggt agttcagtaa tcatacctca 151 cattactaca ctcttgatta ataTATAAAA Ccaaatcagt ttttaaaaat 201 AAGGGAAAAT CCTAATAAAG GAGAAGAAAA ACAGATCTGA AATCCCGCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.006 -strand +49 : +44 AGCGGG AC RSP01068 Mean Expected Number 0.007 +strand -115 : -107 TGTGACAGT Totally 2 motifs of 2 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATAMY2 |LOCUS: AT1G76130 |PROD: alpha-amylase, putative / 1 |28566179..28568970 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +362 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.19 G - 0.19 T - 0.48 C - 0.14 1 tttgtgggta tagtccaatt tgctctttta attcttcttc ttcattgtaa 51 catttataaa aggtttgttt tttgtgtggc cgaaagttgt ttgacatttg 101 attctgattc gtttgggatc agaaactgtt taatcacttc acgttctctc 151 ttcggctcTA TATATAtata tgtaggattg tttctttaag ggacttgtgt 201 GATTTAGCTT CTTCGTTTCC TTGGTATTTG ATCTTCTTTT ATGTGTGTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00361 Mean Expected Number 0.006 +strand -121 : -116 CCGAAA AC RSP01024 Mean Expected Number 0.004 +strand -80 : -74 AGAAACT AC RSP01054 Mean Expected Number 0.003 -strand -147 : -157 AAtGTTACAAT AC RSP01237 Mean Expected Number 0.001 +strand -45 : -36 CTCTATATAT Totally 4 motifs of 4 different REs have been found Description of REs found 346. Group RE: LTRE /AC: RSP00361//OS: Hordeum vulgare /GENE: blt4.9/RE: LTRE /TF: unknown 949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: small nuclear ribonucleoprotein D3 |LOCUS: AT1G76300 |PROD: the same as GENE |28630778..28632257 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.28 C - 0.16 1 tacaaacagt tcttatcttt ttattttttt gggtcaacta aacaaatctt 51 atcttatctt atactaataa aacttaagag taaaaacaaa gtaacaaaaa 101 aggcacacaa cattcaacta atgggcCCAA Taaactaatg ggccgatcca 151 aaaTCTAAAT Aagaagtcca taagagtgtg gagctttaac gagagaagct 201 AAATTGTTCA AAGCTTTTTG GCTGCTAAAA AGGAAAAGGG AAGGTTCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.001 -strand -141 : -149 AAGATAAGA AC RSP00227 Mean Expected Number 0.001 -strand -146 : -154 AAGATAAGA AC RSP00227 Mean Expected Number 0.001 -strand -182 : -190 AAGATAAGA AC RSP01053 Mean Expected Number 0.002 -strand -143 : -151 GATAAGATA Totally 4 motifs of 2 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G76410 |PROD: the same as GENE |28673742..28674540 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.31 C - 0.25 1 tagagtttac atgagctagc tttcgagttt tcagtcatta actaaatgca 51 accgatttcg aactaataac aattgaaatt ttacgaaaac atccttataa 101 ctgaaagtga tACAATaaac tttataatat aaagcaaaaa tacccaagac 151 gaagatctca ctcacTATAA ATCcctttcc tctttgcctc cccaaaaaac 201 GCTCACACTC CTAATCCCTC CCATTTTTCA AACCACTCTC TCTTTCTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.008 +strand -158 : -151 TAAATGCA AC RSP00861 Mean Expected Number 0.004 -strand +47 : +39 AGAAAGAGA AC RSP00879 Mean Expected Number 0.004 -strand -176 : -182 CGAAAGC Totally 3 motifs of 3 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin efflux carrier family protein |LOCUS: AT1G76520 |PROD: the same as GENE |28720026..28722308 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +252 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.19 T - 0.30 C - 0.14 1 acaccaagtt gtacatacaa aatatgtagg atgaaaatat gaaattctct 51 tcccatatgc atagaataat aatttacctt agttaaaaag attagtttct 101 aagtttgccc caaataaaga gattagtttc ttgaaaaaag cattttgtgg 151 atagacaaga aTTTAAATAg aatgaagagg cgaccatgca agtgttgtac 201 TAGGCCAAAT TTTGGAGACG CTCTTTCTCT TTCATAGAGA GAGAGTGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand +36 : +44 AGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc-binding family protein |LOCUS: AT1G76590 |PROD: the same as GENE |28745585..28747101 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +184 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.31 C - 0.16 1 tatcaataac accacctttt ttttttaagt tcctttactt ctggggtctc 51 tagagaccca cacatgtgca caaaatatac gtgtgtctct catagacttt 101 aaagcaaaat tagagaacac ttatttttag ccaaaaaaag taattaaaga 151 aaaaactaTA TAAAAAcagt ttaaaaaggg gatgatatta aatgattttc 201 ATGTGAATTA TAAAACGTAT TGAGTATTAT CGTGACCGAC TTCAAAAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.001 -strand -61 : -70 CTTTTTTTGG AC RSP01288 Mean Expected Number 0.003 +strand -124 : -117 ATACGTGT AC RSP01469 Mean Expected Number 0.009 -strand -132 : -141 gCACATGTGT AC RSP01631 Mean Expected Number 0.001 +strand -104 : -94 CTTTAAAGCAA AC RSP01632 Mean Expected Number 0.002 +strand -104 : -94 CTTTAAAGCAA AC RSP01633 Mean Expected Number 0.001 +strand -104 : -94 CTTTAAAGCAA AC RSP01636 Mean Expected Number 0.002 +strand -104 : -94 CTTTAAAGCAA AC RSP01637 Mean Expected Number 0.002 +strand -104 : -94 CTTTAAAGCAA AC RSP01638 Mean Expected Number 0.002 +strand -104 : -94 CTTTAAAGCAA AC RSP01702 Mean Expected Number 0.009 +strand +12 : +21 AAaACGTATT AC RSP01715 Mean Expected Number 0.001 -strand -115 : -126 AcACACGTATAT Totally 11 motifs of 11 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1523. Group TF: STF1/HY5 /AC: RSP01715//OS: Arabidopsis thaliana /GENE: ARF6 (At1g30330)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G76600 |PROD: the same as GENE |28751782..28752739 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.31 C - 0.28 1 attggccttg taaaacaaga ctactctcac aacagtcaac acacacagct 51 aagcatacgc gtcagcttcc ggtttaaaca aaaaaaaaca caaaccgtaa 101 tttggtttcc gtttcttcct cttgtaacga ccggttaaat aaaatgctga 151 cgtcaccatc ttcttcTATA TATAtcctac ctggaaccaa ctctgtatat 201 ACGCGTCCTC CTCTCTCTTC TTCCTCTTGC TATCAATAAA TCTCTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.005 -strand +51 : +43 AGAAAGAGA AC RSP01730 Mean Expected Number 0.000 -strand -44 : -55 GGTGACGTCAGC Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1538. Group TF: STF1/HY5 /AC: RSP01730//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CRE (G/A): /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calcium-binding EF hand family protein |LOCUS: AT1G76650 |PROD: the same as GENE |complement(28771644..28772411) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.07 T - 0.26 C - 0.23 1 aaaggaagaa aaagcgtgtt ttatacaaga aaactcatta aaataaaagt 51 ccaaaatatc taaacactaa tctaccacgt ctattacaca cacacacaca 101 cacttgatct taatttattt tcaagattca agaaaatacc cattccatta 151 ccacaacttg accacacgcc tataTATAAA ACataaaagc cctttcccct 201 ATTTCTCATT CACTTTTCAT TTCAAAAGTA AAACAAGACA AACAAAAAAT 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein (FBX3) |LOCUS: AT1G76920 |PROD: the same as GENE |28896956..28898570 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +233 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.14 T - 0.27 C - 0.14 1 agccattgta aataaatctt aactccatga cttatttcac aaaatgactg 51 taaaaatata tatatagata ttaagtaggt ttaaacaatt atgaatctat 101 gaaaaatgcg tatgtcgagt ctttctaata caaaacttca tacaaataat 151 gaccaaagag aaTATAAAAT agtcaattat gaaaatattc aaatgataag 201 CAGACAAGTA GGTGACTCAG CGCATTAAGC AACCCAAGGA CAAAATGGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.010 -strand +19 : +13 TGAGTCA AC RSP00943 Mean Expected Number 0.005 +strand -169 : -159 TtATTTCACAA AC RSP01596 Mean Expected Number 0.005 -strand -159 : -169 TTGTGAAATaA Totally 3 motifs of 3 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ADH1 |LOCUS: AT1G77120 |PROD: alcohol dehydrogenase (ADH) |28980345..28982311 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.29 C - 0.22 1 agcaacgcca agtggaaaga gcgttcgaga gaacaaggca aaaccaaata 51 cgcccctagt attctacaga tgtcgactgg ataattacaa aagatttcaa 101 taaacagtac taattaattt ctagtggtga gtttttgtaa atatctactt 151 cttccaatta ccagctgcta TATAAATCcc cttctctgtt tctcttttct 201 TACATCACAA TCACACAAAA CTAACAAAAG ATCAAAAGCA AGTTCTTCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 -strand -1 : -10 AgAAAAGAGA AC RSP00522 Mean Expected Number 0.005 -strand -186 : -192 CCACTTG AC RSP00615 Mean Expected Number 0.009 -strand -70 : -75 CTCACC AC RSP00683 Mean Expected Number 0.002 +strand -194 : -185 GCCAAGTGGA AC RSP00716 Mean Expected Number 0.005 +strand -162 : -154 CAAAACCAA AC RSP00717 Mean Expected Number 0.000 +strand -163 : -144 GCAAAACCAAATACGCCCCT AC RSP00720 Mean Expected Number 0.000 +strand -197 : -172 AACGCCAAGTGGAAAGAGCGTTCGAG AC RSP00749 Mean Expected Number 0.006 -strand -108 : -119 cTTTTGTAATTA AC RSP01167 Mean Expected Number 0.006 +strand -63 : -55 TAAATATCT Totally 9 motifs of 9 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 682. Group RE: ARE /AC: RSP00717//OS: Arabidopsis thaliana /GENE: Adh/RE: ARE /TF: unknown 685. Group TF: GBF /AC: RSP00720//OS: Arabidopsis thaliana /GENE: Adh/RE: "in vivo footprint" /TF: GBF 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 1-aminocyclopropane-1-carboxylate oxidase |LOCUS: AT1G77330 |PROD: the same as GENE |complement(29067884..29069431) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.32 C - 0.14 1 atatggaaac tataagattc aacggttgta cttatgcatg cttagctttt 51 aaaaaataac ataacgtaaa aatgaacgat aaattaaata caatagtcaa 101 ctggtcactg ttacgttttt ttcattttcg ttaaagaaaa caaatacatg 151 ggaaaattta gaaatagTAT AAATGgaggc ttaagctttc cataatcttc 201 ACAACTAAAT CAGAAGATTA CTACTAAACA GAGTCTTTTT TGACTTGCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.010 +strand -178 : -173 CGGTTG AC RSP00530 Mean Expected Number 0.003 +strand +34 : +45 TCTTTTTTgACT AC RSP00593 Mean Expected Number 0.004 -strand -181 : -189 GAATCTTAT AC RSP00680 Mean Expected Number 0.009 +strand +26 : +35 aAACAGAGTC AC RSP00949 Mean Expected Number 0.004 +strand -107 : -100 TAGTCAAC Totally 5 motifs of 5 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AAP3 |LOCUS: AT1G77380 |PROD: amino acid carrier, putative / amino acid permease |complement(29079782..29082284) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.39 C - 0.20 1 aatcattcat ataaaattat aaatcatgaa gtcaaatttt tcaatagtaa 51 cacttgagta atagtggtcc taccaacttt ttaccaagac agatatattt 101 tttttaatac actttttacc ttttactgtg tttgcctcaa atgagtgttt 151 ttaccagttt ctgtgtaTAT AAATCtgcac tccactctca gtttatcttc 201 ATCCACAAGA CAGTTCTTTA ACAAAGTCAT TAAACATTTC CCTTACCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.005 +strand +19 : +28 TAACAaAGTC AC RSP00933 Mean Expected Number 0.003 -strand -178 : -190 TTTATAATTTTaT Totally 2 motifs of 2 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT1G77420 |PROD: the same as GENE |29098393..29100610 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.27 C - 0.18 1 atatatgatt caatggaaat tgcaattata aagtaaaagc ccaatagcgt 51 caaaaaaaag taaaagccca ataatagtga ggcccatcaa taatctggag 101 tcaaACAATg gtggataatg gaaatctctc aaaatccaaa tccggtttta 151 gccggtTATA AATGggtttg actggtttcg ggtcacaatc gaacggttga 201 CGTCGATCAT CATTCTGGTA GTTGAAAACT TTGTCGTCGT CGTCGTCGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -146 : -135 AAAAAGTAAAAg AC RSP00778 Mean Expected Number 0.004 +strand -195 : -186 TGATTCAATG Totally 2 motifs of 2 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ANAC032 |LOCUS: AT1G77450 |PROD: no apical meristem (NAM) family protein |29104848..29106155 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.10 T - 0.35 C - 0.28 1 aagcaatgac aaaactcacc tacattacag tctgccacgt gtccctctcc 51 atctacttca aatgaatcct ccactataca gatttaacca tttttctatt 101 tttgtttgag attcctttcc accaacacaa agcccctgtc tatccgccat 151 gtgtccacga cctttctTAT ATATAtagtc atctttcttc tttgctcgag 201 AGAAGTTTCA ACTTTCAAAC ATATCTTTAC AGTTCTTTCT TGCTAAACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -159 : -167 ACACGTGGC AC RSP00044 Mean Expected Number 0.001 -strand -157 : -167 GGACaCGTGGC AC RSP00056 Mean Expected Number 0.006 +strand -167 : -158 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -167 : -158 GCCACGTGtC AC RSP00073 Mean Expected Number 0.001 -strand -158 : -167 GaCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -166 : -157 CCACGTGtCC AC RSP00171 Mean Expected Number 0.005 +strand -3 : +3 GAGAGA AC RSP00175 Mean Expected Number 0.000 -strand -160 : -167 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -158 : -167 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -157 : -168 gGACACGTGGCA AC RSP00340 Mean Expected Number 0.006 +strand -167 : -158 gCCACGTGTC AC RSP00524 Mean Expected Number 0.006 -strand -159 : -165 ACACGTG AC RSP00936 Mean Expected Number 0.000 +strand -168 : -157 TGCCACGTGTCc AC RSP01034 Mean Expected Number 0.005 -strand -161 : -167 ACGTGGC AC RSP01035 Mean Expected Number 0.006 +strand -164 : -158 ACGTGTC AC RSP01326 Mean Expected Number 0.008 -strand -90 : -96 TCTCAAA AC RSP01237 Mean Expected Number 0.003 -strand -23 : -32 CTaTATATAT AC RSP01255 Mean Expected Number 0.002 -strand -159 : -166 ACACGTGG Totally 18 motifs of 17 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC: RSP01326 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L30 (RPL30B) |LOCUS: AT1G77940 |PROD: the same as GENE |complement(29308791..29310259) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.29 C - 0.19 1 ttgaatgtac aagtggttta tgctaattta atcactgtca attcactgaa 51 acgaataaat cgagtaatta cttttttaat tgacaaatta caaaactata 101 gaaacattaa gggcataatt gaaatttcca ataaATTGAa gagcaaaaac 151 cctagaaaat tgacacggac TATAAAAAgg tgacgaagcg gcgctttttc 201 GGTTTGGTCA TCGTGCTCCT CTTCTCCTCC ACCGCACAGA TCCAAGACAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.007 -strand -185 : -191 CCACTTG Totally 1 motifs of 1 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGSTU20 |LOCUS: AT1G78370 |PROD: glutathione S-transferase, putative |complement(29489165..29490183) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.29 C - 0.22 1 ttcactagtt gcacacatat gacaattatt taacaaagtt gcaaaataca 51 ttttaaatcg ttacgggtaa aagcttactg tttaaaagat ttatatatgg 101 accataatat gctttgaaaa aagctgatgt gacgtaacgg gaatcaaaat 151 cctttccaca tcattttctt ccccTATAAA ACaaccgtca ctcactcctt 201 CTCTACTATA ACACACACTC GCTTGTTCAC GCACAACAAA AAGCAAGAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.003 +strand -71 : -64 TGACGTAA AC RSP01469 Mean Expected Number 0.009 -strand -179 : -188 TCAtATGTGT AC RSP01600 Mean Expected Number 0.008 -strand -82 : -89 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGSTU19 |LOCUS: AT1G78380 |PROD: glutathione S-transferase, putative |complement(29491306..29492799) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.27 C - 0.17 1 acactataat ggtcaacaga taaaaaaaag gcgaatgaag atatgttacg 51 taaaaagaaa atactgtaat tataaattat tactttaaaa agctttaaaa 101 tctggccaca tgtttttaaa gagtggtgtg acgtaacgac tagagtcagc 151 acaatccatt attgtatCAT AAATAttctc atctataaat tacctaaacc 201 CTTACAGGTA GTGTCCCAAC CAAACAAATC GAGAAAGACG AACACTTACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.005 +strand -72 : -65 TGACGTAA AC RSP00454 Mean Expected Number 0.002 -strand -149 : -159 TACGTAACATa AC RSP01716 Mean Expected Number 0.001 -strand -146 : -157 TTTTACGTAAcA Totally 3 motifs of 3 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 1524. Group RE: A-box /Group TF: STF1/HY5 /AC: RSP01716//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: VQ motif-containing protein |LOCUS: AT1G78410 |PROD: the same as GENE |29507475..29508134 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.25 C - 0.18 1 catgacgtca ggaagaaaaa aaacaagaaa aaaataggtc gtcacatatg 51 ttttcatgta ggacaagatt acgattataa aatcgtttca aaaagaatac 101 gaaaaaattt acttgaatga gtcacttcag taccccacag agattatatc 151 tttctctctt taatctctcT ATAAATAcct aagtatgcaa ctatgcatat 201 AAATCTACAA AACATCTGAA CACCCAAAGA CACAGGAAGA GAGCTAAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00857 Mean Expected Number 0.007 +strand +12 : +21 aCATCTGAAC AC RSP01296 Mean Expected Number 0.010 +strand -32 : -24 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -32 : -23 CTATAAATAC AC RSP01469 Mean Expected Number 0.004 +strand -159 : -150 TCACATaTGT Totally 4 motifs of 4 different REs have been found Description of REs found 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: gibberellin 2-oxidase / GA2-oxidase (GA2OX1) |LOCUS: AT1G78440 |PROD: the same as GENE |complement(29516492..29517944) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.32 C - 0.18 1 tttactattt agcaaataac taatcacaat ggaggctttc gcaaatatcg 51 tcccgatata ttcaatttta ttgatataga tacataaaag agaaaaaaat 101 aagtgattag ctttagtttt gaacagtttt gatcgtacgt cgttgtaaga 151 tctttatcat ctcatctgcT ATATATAcac tcctccgagt acataaccca 201 ATGTCTCAGC CTTCAAAGCT ATCAAAATCA AAAAAATTCT ATCAAACAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.004 -strand -160 : -166 CGAAAGC AC RSP01634 Mean Expected Number 0.001 +strand +11 : +21 CTTCAAAGCTA AC RSP01635 Mean Expected Number 0.001 +strand +11 : +21 CTTCAAAGCTA AC RSP01637 Mean Expected Number 0.002 +strand +11 : +21 CTTCAAAGCTA AC RSP01638 Mean Expected Number 0.002 +strand +11 : +21 CTTCAAAGCTA Totally 5 motifs of 5 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1454. Group RE: TERE /AC: RSP01634//OS: Arabidopsis thaliana /GENE: At3g62160/RE: TERE /TF: unknown 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SOUL heme-binding family protein |LOCUS: AT1G78450 |PROD: the same as GENE |complement(29521882..29522826) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.35 C - 0.18 1 cgataattta tgtaatttcg atatttttaa tgcatattat ttttgtcggc 51 caacttgtta tatttaatca tgtgtttaca atgcaattta atcctatccg 101 aagatgaacc acacacataa aaccttatct gttacaaaaa aaatgtttat 151 gtttttcttc ataaatgTAT AAAACcttgt atcagtttac gttgcatggc 201 CGCAACGGAA AACAAATCCG CCAATGGAAG CGGCTCTGAG CATCTTCAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.008 -strand -151 : -156 GCCGAC AC RSP01086 Mean Expected Number 0.010 +strand -15 : -6 TTTACGTTgC Totally 2 motifs of 2 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pathogenesis-related family protein |LOCUS: AT1G78780 |PROD: the same as GENE |complement(29626237..29627338) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.29 C - 0.15 1 acagccaaag aagtaattgt tggttattgg ttgcaacttt ttagaaaata 51 tgattgagac aattaacaac ttcaaaatgt caactttacg cggataagaa 101 aacgggattc accactaatc cattttaaac taatttctaa ataTCAATca 151 acatgtattg tgagatTATA AAAGatacaa gcaatcataa ctcattctcc 201 ATTAAAAAGC TAATATGGCT ACTAGGGAAG AGAGAGATAA GTATAGATCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand +29 : +37 AGAGAGAGA AC RSP01602 Mean Expected Number 0.005 -strand -142 : -149 TCTCAATC AC RSP01733 Mean Expected Number 0.009 -strand -108 : -113 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G79200 |PROD: the same as GENE |29799281..29800933 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.26 T - 0.24 C - 0.16 1 acattgagca aaaagctagt aaaaagggat tataattgta ttggggtaaa 51 taaaaacatt gggggcgaga tgcaaaatat aaaagagtaa ggggtttaag 101 tgtaatttcg acatcgagac ccgacccgac ccgggattat gaatcctgat 151 cgccgcgggg tccaAATAAA TAtatgtcag ctcctccgtt cttttatttt 201 AGTCCGTCGG GAAATAATGG TAAGCGAACG GAGCTCCAAG GAGAAGAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.003 +strand -50 : -44 CGCCGCG AC RSP00572 Mean Expected Number 0.005 +strand -29 : -22 ATATGTCA AC RSP01150 Mean Expected Number 0.005 -strand -164 : -174 AATTATAATCc Totally 3 motifs of 3 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G79770 |PROD: the same as GENE |30019254..30019971 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.26 T - 0.20 C - 0.17 1 agcacgtgaa ttagtggctt cattaattag tattgttgtg aaaagtaaaa 51 caaagagtaa gtaaagagct aggtcgctat agcgtgagca cgtacgtgag 101 atggcaatgc tgaaccacAC AATacacatg aatatgtcaa cacagacagc 151 accgctTATA AATAccaaag cttagcgcag acgctctagg tgaaaaaaag 201 AAGATTGGAT ATGGCAGCAA ACGGGAGAAG GAAGAGCGTG AGCGGAAGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.008 -strand -106 : -112 GTACGTG AC RSP00103 Mean Expected Number 0.005 +strand -113 : -104 GCACgTACGT AC RSP00200 Mean Expected Number 0.000 +strand -180 : -171 CATTAATTAG AC RSP00475 Mean Expected Number 0.000 -strand -43 : -54 tAAGCGGTGCTG AC RSP00509 Mean Expected Number 0.001 +strand -44 : -33 TATAAATACCAa AC RSP00572 Mean Expected Number 0.004 +strand -69 : -62 ATATGTCA AC RSP00817 Mean Expected Number 0.005 -strand -191 : -200 TtCACGTGCT Totally 7 motifs of 7 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 453. Group TF: Alfin1 /AC: RSP00475//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS5 /TF: Alfin1 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: mitochondrial substrate carrier family protein |LOCUS: AT1G79900 |PROD: the same as GENE |complement(30056972..30058624) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.35 C - 0.16 1 attatcattt tttgttaatt taatttaata atggttaatg tgaaaaacag 51 aggaaactag aagaagagag ttttggcagg agatgtaggt ggcgggagtg 101 ggttgggcga gagagatgat ggtgacggtg cagctccaaa tcttctctaa 151 tcttttgaca cttttcTATA AAACtcccca aactgattct ctctgactgc 201 CTCATAAGTC ATTATAATAG TTTCCCCCGG ATTGTTTTTT CTTTCTTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.006 -strand -108 : -117 GCCACcTACA AC RSP00075 Mean Expected Number 0.004 +strand -116 : -107 GTAgGTGGCG AC RSP00860 Mean Expected Number 0.004 -strand +46 : +38 AGAAAGAAA AC RSP00988 Mean Expected Number 0.001 -strand -119 : -130 CTCCtGCCAAAA Totally 4 motifs of 4 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G80040 |PROD: the same as GENE |complement(30114040..30116173) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +229 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.22 C - 0.18 1 tcatattgtt tgttagataa ctttactaag ggggcaaaaa aggaattatc 51 agataaacaa aatatttgaa aaaagaaaaa aacgttggca gggagtttca 101 cgcgcaacgc aacgcgccca tgtgattaac aaaagtacga gaaagcccct 151 gccgcttaaa gatctgtaTA TAAAAAgggt aaaataaggt ctcctggcct 201 GGCCTTTAAG ATAAAGAAAA GGAAACCCAA TCGAAAACCT AAAACCCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.004 -strand -187 : -193 AACAAAC AC RSP00092 Mean Expected Number 0.009 -strand -186 : -192 TAACAAA AC RSP00741 Mean Expected Number 0.008 +strand -28 : -17 AAAAGGgTAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 90. Group TF: GAmyb /AC: RSP00092//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TAACAAA box /TF: GAmyb ||Identical REs AC: RSP00393 RSP01051 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CCR2 |LOCUS: AT1G80820 |PROD: cinnamoyl-CoA reductase, putative |30375465..30377562 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.34 C - 0.21 1 ttcacaataa attcttcatt taccaaaccc acactctttc aatatatcag 51 aacaaaaata tactaatcta aagtttttca gtttgttctt ttgaaaaaga 101 aaagaattat cataagttga ctcaccaact ctttaccatg gttaagtaac 151 ttgttttgaa gtctcTATAT ATAcaaatca ctaacgacac atcataacat 201 ACTACTCTCT TAAGCCCTTT CATAACCTTG TAAACCATTA AGAGGCTTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.008 -strand -114 : -120 AACAAAC AC RSP00871 Mean Expected Number 0.008 -strand -75 : -84 GGTGAGTCAa AC RSP00950 Mean Expected Number 0.003 +strand -80 : -70 CTCACCAACtC AC RSP01237 Mean Expected Number 0.002 +strand -38 : -29 CTCTATATAT Totally 4 motifs of 4 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: WRKY40 |LOCUS: AT1G80840 |PROD: WRKY family transcription factor |30388584..30390388 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.28 C - 0.24 1 caaatacgtg tgcgggtgga cccgatagaa gccgagttga gtctaaagac 51 taaaaagtaa acaaaaaatg ataagaccat cacttagttt attgcatgaa 101 aatgaaaagc acatgctcct ctctctctct tctgcctctt tccatctagt 151 ttcctcttaa aactccatTA TATATAgaaa caaaatcttt tctctcttca 201 ACAATCCCAC CATTAAAAAA GAAGAACCCA AGATCGACTC TTACTTCGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -149 : -138 AAAAAGTAAAcA AC RSP00107 Mean Expected Number 0.008 -strand -103 : -109 CATGCAA AC RSP00864 Mean Expected Number 0.001 -strand -71 : -79 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -73 : -81 AGAGAGAGA AC RSP01237 Mean Expected Number 0.008 -strand -22 : -31 tTCTATATAT AC RSP01288 Mean Expected Number 0.003 +strand -197 : -190 ATACGTGT AC RSP01702 Mean Expected Number 0.005 -strand -189 : -198 cACACGTATT Totally 7 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: J8 |LOCUS: AT1G80920 |PROD: |complement(30408536..30409577) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.35 C - 0.16 1 atattaaact tttttaaaca taacaacaaa aaggttggga tggataactt 51 tttttttatt tataaatcta ctgtatgtgt aaaaatagta aaaaacaatt 101 tggccgtgga aatcggtagc gttatggata aggacacttt gagatgagtc 151 accgtttcct ttcttTATAA ATAatcccgc ttcctctctt tatccaatcc 201 ATTAAATCCT AAAATCCATT ATTGATTGAA TCTTCGAGTT ACCAACAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 +strand -118 : -107 AAAtAGTAAAAA AC RSP00127 Mean Expected Number 0.008 -strand -20 : -25 AGCGGG AC RSP00862 Mean Expected Number 0.002 -strand -37 : -45 AGAAAGGAA AC RSP00863 Mean Expected Number 0.001 -strand -12 : -20 AGAGAGGAA AC RSP00871 Mean Expected Number 0.005 -strand -48 : -57 GGTGAcTCAT Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G01300 |PROD: the same as GENE |complement(151062..151728) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.27 C - 0.19 1 aaacagattt taatagaacc actgaaacat gaatgatggg aaacgaaaat 51 gacgtggagg taaaggcaag tgggttccat taatcaaatt gcgaatggca 101 acgcgctaat cataaatcat ccactttatt gttataatat tgttACAATa 151 gtattatcca aatgtTATAA ATAcatttcc aactgtccat catcttctcc 201 ATCAACAACA TTCCAAAATA ACAACGATCA ATATCACAAT GGAAGCTACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.001 +strand -151 : -144 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -144 : -151 CCACGTCA AC RSP00522 Mean Expected Number 0.006 -strand -128 : -134 CCACTTG AC RSP01275 Mean Expected Number 0.002 -strand -143 : -152 TCCACGTCAT AC RSP01734 Mean Expected Number 0.006 -strand -143 : -149 TCCACGT Totally 5 motifs of 5 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G01630 |PROD: the same as GENE |complement(279283..282122) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.39 C - 0.12 1 aaaaaaatcc tagaacattt atttaaaggt tagttttaaa cgaaaataaa 51 agaattgttt ttccaccgaa aaataaatta ttaatattta gtggtacgat 101 acatcttttc agcaaaaaaa taaaaaaaaa ttagaaaccc aacttttagc 151 ctttaggctt gaagtTATAT ATAttactct tttgaagcga actgattctt 201 AATTTTTCAC TTTCTATTTC TCTATATCTA TTTTTTTATA GATATATATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.004 -strand -165 : -174 AAaCTAACCT Totally 1 motifs of 1 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: MutT/nudix family protein |LOCUS: AT2G01670 |PROD: the same as GENE |complement(296509..298091) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +274 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.37 C - 0.18 1 ttagacttgt agctatgctt attggtactt aaaattaaca tacatttttc 51 ttttaaaaaa ccccaacatt agctttagct tctcgaccaa tgatgaaaat 101 tccaagaaaa gaaagaaaca ttcataATTG Tttttttttc aaacaaaaaa 151 aaagagcggc cgttttatTA TAAAAAgaag ataagctatt ggaggttgat 201 ACAACGCTTT TTGTCTCATC TCCTTCTTCT TCTCCTTCTC AAATCTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.001 -strand -15 : -24 GCTTATCTTC AC RSP00054 Mean Expected Number 0.009 -strand -15 : -21 GCTTATC AC RSP00163 Mean Expected Number 0.002 +strand +7 : +17 CtTTTTGTCTC AC RSP00860 Mean Expected Number 0.002 +strand -91 : -83 AGAAAGAAA AC RSP01016 Mean Expected Number 0.008 +strand -87 : -80 AGAAACAT AC RSP01206 Mean Expected Number 0.000 +strand -114 : -103 CCAATGATGAAA AC RSP01209 Mean Expected Number 0.006 -strand -90 : -99 CTTTTCTTGG Totally 7 motifs of 7 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1116. Group TF: LFY /AC: RSP01206//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EL1 /TF: LFY ||Identical REs AC: RSP01211 RSP01216 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PHD finger family protein, contains Pfam domain |LOCUS: AT2G02470 |PROD: the same as GENE |652579..654914 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +257 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.38 C - 0.12 1 aataatgtaa aatttgggag tggggaatgt agctcggaaa aaaatagggt 51 atgtagatcg gaattaataa atagatttta tattattaca taaacaataa 101 taaaatacAC AATgttgtct ttatttaatt aatacaaaaa taataaaata 151 gacaatgttg tcttTATTAA TAttacttct cagccccaaa attaatcttt 201 GATCGGTCCC TTTTGTTTTA TCGTTTTAGG GTTTGTAGCT CCTTTCTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 +strand +26 : +34 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +34 : +26 AAACCCTAA AC RSP00751 Mean Expected Number 0.003 -strand +27 : +16 AAAaCGATAAAA AC RSP01303 Mean Expected Number 0.005 -strand +35 : +26 cAAACCCTAA AC RSP01472 Mean Expected Number 0.001 -strand -144 : -154 TCTACaTACCC Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1341. Group RE: Box-I /AC: RSP01472//OS: Pisum sativum /GENE: PsCHS1/RE: Box-I /TF: unknown ||Identical REs AC: RSP01528 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G02515 |PROD: the same as GENE |675255..675655 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.36 C - 0.15 1 tacatataac tttctttcta tatgaaatta tctagtcaaa atcttttttt 51 tttggacaga aatctagtca aaatctatga tattaattgt cttttttttt 101 gtcacagcat ataattctag tcaacaaaaa gataagtatA TTGCtttatg 151 ctatttttgt cacaacaaTA TAAATAaaaa tctaggttag acatttgcaa 201 ACACAAAACA AAATATGAAG ATGATTCTGA AGCTCCCCGC AATAACAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.004 -strand -77 : -86 TTGACTAGaA AC RSP00860 Mean Expected Number 0.004 -strand -182 : -190 AGAAAGAAA AC RSP00949 Mean Expected Number 0.004 +strand -83 : -76 TAGTCAAC AC RSP01201 Mean Expected Number 0.001 +strand +28 : +35 TGAAGCTC AC RSP01639 Mean Expected Number 0.009 +strand -116 : -107 AATTGTCTTT Totally 5 motifs of 5 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: aspartyl protease family protein |LOCUS: AT2G03200 |PROD: the same as GENE |complement(966448..967915) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.11 T - 0.37 C - 0.25 1 tcaaaagttt tctcaactaa caacggaaga atagggcttt gcttgtttga 51 gtgaatctct taaacagtgt ctcctcattt taagtaggga agttacatca 101 atgtctatct tcttacacgc ctaactttgt tctgtaactc ttttcttttt 151 gtgtcctaaa aactcttTAT AAACActaat ctacactccc ttaatctctc 201 ATCTATCCAC TCACACACAC ACAAACCATG GCTTCTTCTT CTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00930 Mean Expected Number 0.008 -strand -113 : -118 CCTACT AC RSP00960 Mean Expected Number 0.007 +strand -187 : -180 CAACTAAC Totally 2 motifs of 2 different REs have been found Description of REs found 859. Group RE: H-box II /AC: RSP00930//OS: French Phaseolus vulgaris /GENE: CHS/RE: H-box II /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: band 7 family protein |LOCUS: AT2G03510 |PROD: the same as GENE |1066639..1069096 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.31 C - 0.21 1 atagtatttg tttaatattt gaagatttgt tttaaaaaaa aagttataat 51 gaaatataaa ttttggaaga ttactcccac atctaaaaaa atacgatcca 101 ttgattctcc tctattcaac ggttcgataT CAATtacaca cacgaagtta 151 aactcttccc tcccacacct TATAAAACcc tatacatgaa aaaaaccttc 201 ATCTTGAAAA AACCCCTTTC CAAGTTTTGC AATTTCCACT GAACAGAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.008 +strand -196 : -186 TATTTGtTTAA AC RSP01114 Mean Expected Number 0.008 -strand -135 : -141 CCAAAAT Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G03690 |PROD: the same as GENE |complement(1121897..1123168) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.33 C - 0.19 1 tacatataac tatatatcag ttacaatatt tatgggccaa aagctcttct 51 tattggattt gactagggaa tctctcagtt ttttttaccc aatggcccaa 101 gttcttatat ttcagtcatt tattttcggt ttttctttga acattaaatg 151 atgggccaca atggagtTAT AAACTaaagg ccccaattga aatctctctc 201 AAAAACTTTC AGTCAAATCT TGAGAACAGA AAGAAAGTCC ACGCGAGGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.004 +strand -142 : -133 TTGACTAGGg AC RSP00860 Mean Expected Number 0.002 +strand +28 : +36 AGAAAGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G04039 |PROD: the same as GENE |1333268..1334563 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +193 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.42 C - 0.16 1 tttaccaatt aagctaacga cacttaactc tttctttctt ctattcttgt 51 gcttctacaa tgggaagatc aacgtaaaca tattattact aaagtttaca 101 tacgatagta aacataacta taatgggaag tgcaagtgtt tttaatttta 151 tttgtaggTA TAAAAAtatg ctatatctct tttttgtgtg tgtggttggc 201 AAATCTTAGG CTCAGCCTTT TTCACATTTG TCTCTTGTTT TATTTCCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.005 +strand -199 : -184 TTACCAATTAAGcTAA AC RSP00080 Mean Expected Number 0.005 -strand -184 : -199 TTAgCTTAATTGGTAA AC RSP00445 Mean Expected Number 0.006 -strand -16 : -25 AAAAAAGAGA AC RSP00489 Mean Expected Number 0.009 -strand -41 : -50 TACCTACaAA Totally 4 motifs of 3 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: auxin-responsive protein-related |LOCUS: AT2G04850 |PROD: the same as GENE |1704280..1705775 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.33 C - 0.19 1 cgtcatattt tatcataatt aaaaagatgt ccaaatatta cacaaccaac 51 caactgtgtt gtggagagtg tttgagtttc acttagcttc aaagcaaaga 101 cttcaatgaa aaatcataat atcaactttt ACAATcacaa tcatatttct 151 taagtttcac tacacaTATA AAAAgtctcg actctattaa caaaaaaaac 201 AGAGATGATC AAACAATGGC GACTTTGATT CTATCATTCT TGCTTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.006 -strand -12 : -21 TAAtAGAGTC AC RSP01091 Mean Expected Number 0.009 -strand +34 : +24 ATAGAATCAAA AC RSP01092 Mean Expected Number 0.010 -strand +34 : +24 ATAGAATCaAA AC RSP01093 Mean Expected Number 0.003 +strand -112 : -102 TCaAAGCAAAG AC RSP01631 Mean Expected Number 0.001 +strand -114 : -104 CTTCAAAGCAA AC RSP01634 Mean Expected Number 0.001 +strand -114 : -104 CTTCAAAGCAA AC RSP01635 Mean Expected Number 0.001 +strand -114 : -104 CTTCAAAGCAA AC RSP01638 Mean Expected Number 0.002 +strand -114 : -104 CTTCAAAGCAA Totally 8 motifs of 8 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1454. Group RE: TERE /AC: RSP01634//OS: Arabidopsis thaliana /GENE: At3g62160/RE: TERE /TF: unknown 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: atg8d |LOCUS: AT2G05630 |PROD: autophagy 8d (APG8d) |complement(2082983..2084879) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.08 T - 0.33 C - 0.19 1 accaattttt taggggtttt taaaacaaaa atataataac aaaaatctaa 51 aatctataga ctaaaatcta aactcaaaaa ctgaatcgaa aatatccatt 101 caggcctaat acatccaata ttTCAATact tcttaactct taactcttaa 151 gttttaagta attaaataTA TAAAGAtctg ttgccaagcg tacccttttt 201 ATAAACATTC CAAATAACTA TCTCCATTCT TTGGAGTTAC CCAATTTCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.002 +strand -192 : -186 TTTAGGG AC RSP00307 Mean Expected Number 0.009 +strand -18 : -13 GCCAAG AC RSP00405 Mean Expected Number 0.001 +strand +30 : +37 TTTGGAGT AC RSP00481 Mean Expected Number 0.010 -strand -185 : -188 CCCC Totally 4 motifs of 4 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 459. Group RE: GC-1 /AC: RSP00481//OS: Zea mays /GENE: Adh1/RE: GC-1 /TF: unknown ||Identical REs AC: RSP00715 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AGT |LOCUS: AT2G13360 |PROD: serine-glyoxylate aminotransferase-related |complement(5546326..5548396) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +412 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.17 T - 0.22 C - 0.15 1 gaagggcaaa tatgcaaagg taacacaaat gcattgtgag ccatacgtaa 51 gctcaaagat ttttcacgtt gctcttatct gccacgcggc caagattcca 101 ataaggcaag ctacttgATT GGgataaact aaataacaaa ataaactact 151 tacaaaaaca tcatgtaatt taaAATAAAT Aaataaaata aaaaaaagaa 201 AAAGAAGAAG ATATATTAAA GAGGTTTGTG AAGACGAAGG AGTCCAAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00044 Mean Expected Number 0.000 -strand -110 : -120 GGcCGCGTGGC AC RSP00063 Mean Expected Number 0.000 -strand -111 : -120 GCCGCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -120 : -111 GCCACGcGGC AC RSP00073 Mean Expected Number 0.001 -strand -111 : -120 GCCgCGTGGC AC RSP00153 Mean Expected Number 0.000 +strand -119 : -110 CCACGcGGCC AC RSP00231 Mean Expected Number 0.006 -strand -79 : -85 CCAATCA AC RSP00629 Mean Expected Number 0.005 -strand -137 : -144 AAAAATCT AC RSP00722 Mean Expected Number 0.006 -strand -122 : -128 GATAAGA AC RSP01075 Mean Expected Number 0.000 -strand -111 : -120 gCCGCGTGGC Totally 9 motifs of 8 different REs have been found Description of REs found 43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: leucine-rich repeat family protein |LOCUS: AT2G15320 |PROD: the same as GENE |complement(6673398..6674786) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.31 C - 0.22 1 gtcacaagat gttaacaaaa aagcaaattt agtagccatt ttagactatt 51 agttcctaat gattgtacaa acatttgatt ttggcttaag ctaagcattg 101 aaccttgtac gtatggagag aggcgaccaa aaggcaaagc cgacctccac 151 cacgtacttt gcctttaTAT AAAGAtttaa cacactttta aagtcttgac 201 ATCATTCATT CACACAAACA CTTCAAACAA TGACTTGCCT TCTTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.004 -strand -43 : -52 AGTACGTGGt AC RSP00075 Mean Expected Number 0.003 -strand -44 : -53 GTACGTGGtG AC RSP00778 Mean Expected Number 0.005 -strand +12 : +3 TGAATGAATG AC RSP01071 Mean Expected Number 0.005 -strand -86 : -95 CAtACGTACA AC RSP01276 Mean Expected Number 0.003 -strand -44 : -51 GTACGTGG AC RSP01687 Mean Expected Number 0.009 -strand -59 : -65 CGGCTTT AC RSP01757 Mean Expected Number 0.002 -strand -1 : -8 GTCAAGAC Totally 7 motifs of 7 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G15580 |PROD: the same as GENE |6804723..6806021 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.20 1 cacatgttta aacaattttc actaacccgt tatttacaca tgtaagagaa 51 aaaaagatag ccaaaaggac ttatagtgtt atctatttaa aaactaaact 101 tgtggtgtct acctaattaa cccatctttg tacgtaCCAA Tatcgctttc 151 ttcaattatt agtaataTAT AAATAtaaat gtttgtagta gctgccggtc 201 ATTTTTTCTT TCTCTCTCTC CTCCCTAAGC AAAACTAAAA CAAGCTATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 +strand -139 : -133 CAAAAGG AC RSP00653 Mean Expected Number 0.004 +strand +12 : +22 cTCTCTCTCCT AC RSP00860 Mean Expected Number 0.006 -strand +13 : +5 AGAAAGAAA AC RSP00864 Mean Expected Number 0.002 -strand +19 : +11 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +21 : +13 GGAGAGAGA AC RSP00953 Mean Expected Number 0.009 +strand -48 : -40 CAATTATTA AC RSP01175 Mean Expected Number 0.000 +strand -11 : -1 AGCTGCCgGTC AC RSP01469 Mean Expected Number 0.007 -strand -156 : -165 TtACATGTGT Totally 8 motifs of 8 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1086. Group TF: Zmhox1a /AC: RSP01175//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 2 /TF: Zmhox1a 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ROC3 |LOCUS: AT2G16600 |PROD: peptidyl-prolyl cis-trans isomerase |7207889..7208650 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.25 C - 0.28 1 tatccagtaa aaaggtagag aaaaaaaaaa cacaatattc tctctctgcc 51 tcggatccac gcaactatta accctagtta gattcaacac taaccacagt 101 taacacgaac ccttTCAATc ttcctccacg tgtcaaaatc aacggtcaca 151 aaaatcattt ccttctcttT ATAAAACact accaaaaccc taatctcttt 201 CACACAATCA CAGAACCTAA TCTTCTTCTC CAATCAATCT CAGAGAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.008 +strand -76 : -67 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 -strand -67 : -76 GACACGTgGA AC RSP00188 Mean Expected Number 0.002 +strand -76 : -67 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -67 : -76 GACACGTGGa AC RSP00340 Mean Expected Number 0.003 +strand -76 : -67 TCCACGTGTC AC RSP00524 Mean Expected Number 0.003 -strand -68 : -74 ACACGTG AC RSP00631 Mean Expected Number 0.005 -strand -103 : -115 TGTGGTTAgTGTT AC RSP00682 Mean Expected Number 0.001 -strand -67 : -76 GaCACGTGGA AC RSP00842 Mean Expected Number 0.001 +strand -151 : -144 CTCGGATC AC RSP00864 Mean Expected Number 0.002 -strand -154 : -162 AGAGAGAGA AC RSP00985 Mean Expected Number 0.001 +strand -125 : -116 AGTTAGaTTC AC RSP01035 Mean Expected Number 0.003 +strand -73 : -67 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -68 : -75 ACACGTGG AC RSP01274 Mean Expected Number 0.005 +strand -76 : -67 TCCACGTgTC Totally 14 motifs of 14 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ADF5 |LOCUS: AT2G16700 |PROD: actin-depolymerizing factor 5 (ADF5) |7251704..7252823 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.17 T - 0.24 C - 0.14 1 tattagatat ttatcagaaa aagacaagat ttattagtgc agaacacacg 51 gtgacgttaa tatgccgacg agaaaaagaa caaaaatatt cgtctctaac 101 aaaaaagttt acaagggtga gtttgtaata agagtaaata gtgatcgcat 151 ttgtataggc ataacttttt aTATAAAGAc ctcaaagtct taccatttga 201 ACAGAAAAAA GCTCTCCACG CCTAAAAAAA AAGAAAAAAG AGACAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.009 +strand -137 : -132 GCCGAC AC RSP00857 Mean Expected Number 0.003 +strand -8 : +2 CCATtTGAAC AC RSP00918 Mean Expected Number 0.003 +strand -151 : -142 GgTGACGTTA AC RSP01167 Mean Expected Number 0.006 -strand -188 : -196 TAAATATCT AC RSP01654 Mean Expected Number 0.005 +strand -151 : -142 GGTGACGTTA Totally 5 motifs of 5 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: GCIP-interacting family protein |LOCUS: AT2G16860 |PROD: the same as GENE |complement(7311002..7313735) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +694 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.33 C - 0.18 1 ataaatttcc aaaaacaaaa ttaactttta aaattgtttt ctcttaaaaa 51 aaaatcaaat tgtatactct ggctagaatt aatgtcaaat tccttaaact 101 taccaaaaac aaatgtcaaa ttccttaaaa aatttgttgg cccaagtcaa 151 atttaagagg cccatcTATA ATTAatattt tccaatattt tttctcctct 201 ATTCTTCTCC ACTGAGCGGA GAAAAAAAAA ATCATTATCG TCCGCGAGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00850 Mean Expected Number 0.004 -strand -60 : -65 GCCAAC AC RSP01195 Mean Expected Number 0.001 +strand -17 : -5 AATATTTTTTCTc Totally 2 motifs of 2 different REs have been found Description of REs found 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G16890 |PROD: the same as GENE |7323971..7326263 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.31 C - 0.17 1 aataatggtt ccctcagttt ggttttcaaa ctcgagtttt agcttaactt 51 gtgtcgatga aaataaactg tacacgtatg tattaaaata tttatttaaa 101 gcaccaacta aaatgttatg ctatttgata atatccaaat aattaaatca 151 atatcacgat tcacttccTA TATATAtagg gcttgcggac cgaacaacat 201 ATCGTGAGAA CTAAGAAACA CCCAAGAAAA CAAACAAACT TTTTAAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01288 Mean Expected Number 0.005 -strand -122 : -129 ATACGTGT Totally 1 motifs of 1 different REs have been found Description of REs found 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: peroxidase, putative |LOCUS: AT2G18150 |PROD: the same as GENE |complement(7899216..7900735) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.25 G - 0.08 T - 0.40 C - 0.27 1 catttggata ccaaacccaa gatttagtct ctttgatttc aaaccatttt 51 ttcaatacat tgtcattttt taatatatct cttaattgat taaaccccaa 101 tcaagttacc aactctATTG Ccttgctttt tcctcttcat gacgctataa 151 tccacgaacc ctctggccTA TATATActtt cgattcttct tctaatcctt 201 CATATCTCCT ACCATCACAA AGTCATCTCC TTCTTCTTTC TTGATCTAGC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G18370 |PROD: the same as GENE |7987711..7988826 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.05 T - 0.37 C - 0.22 1 ccaaactgac aagaaatctc tataacctaa ctacctagat caaataatat 51 ttatttttaa gtatatcata ccaaaatgtt gaaacttata ttttcatttc 101 actccatcaa cccaaactaa catctactaa ttctcttatt ttaatataaa 151 tttcctagtc cgccaTATAT ATAaacgctt cgtctccact ctacatattt 201 AGCAACAACA AAGAAACCCC TAAGATTTTT ATTTATTTTT TTCTCAATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01475 Mean Expected Number 0.001 +strand -130 : -122 CCAAAATGT Totally 1 motifs of 1 different REs have been found Description of REs found 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: EMB2444 |LOCUS: AT2G18510 |PROD: pre-mRNA splicing factor, putative |complement(8038264..8040700) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.30 C - 0.20 1 aaatttcata tcgtttaaca atttaggttt acagttattt gtaaaaccaa 51 ttcccaaaat gattagtaaa aaaaactcaa aatctctaga ctctaaatag 101 gctaaatatc ttaatggata taaaagagct taatgggctt ataggcccat 151 tagagacggc accacTCTAA ATAaacccct ctttcttcac cgtccgttct 201 AACTTCTAGA AAAATCGCCA GAAGTGACGA AATTGAAAAT CTCAGATTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.007 +strand -156 : -147 AACCAATtCC AC RSP01167 Mean Expected Number 0.007 +strand -98 : -90 TAAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G19000 |PROD: the same as GENE |8248186..8248866 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.32 C - 0.22 1 ttcttagttg cataaaacta ctccgaccaa ttatctagct agtcctctac 51 aattaatcta aaattagaga gctttctcaa ataattgtag tctacctaaa 101 ttttctcATT GCctctttct ttaaatagct taacaaaaat cactggtcac 151 atatgtagtc agagtatgtT ATATATAtgc atatattgaa acatcatcct 201 ATTCAATCTC ACAACAACCA ATCTACACAC AAAACAATAA CAACAACAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00503 Mean Expected Number 0.001 +strand -166 : -159 CTAGCTAG AC RSP00503 Mean Expected Number 0.001 -strand -159 : -166 CTAGCTAG AC RSP00631 Mean Expected Number 0.002 -strand +45 : +33 TGTtGTTATTGTT AC RSP01469 Mean Expected Number 0.005 +strand -54 : -45 TCACATaTGT Totally 4 motifs of 3 different REs have been found Description of REs found 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G19180 |PROD: the same as GENE |8331798..8333040 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.31 C - 0.18 1 aaagaaataa atttaccatc aaaaaagaaa aaaaattgac caaagaaaaa 51 aaaaaattga ccaagaaaaa aaggttattt gtttttctat taattttcta 101 taattggatc ggatctcagg gattcggatc CCAATttgta cccgtttcag 151 tttcacgaac tctgtcatcg ttTATAAATG taaaaaaaat ctcaaacttt 201 CTCTTTCTTG ACTCTCTCTC CTAAAAATGT CTCGATTGCT CTCAAAAACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.003 +strand -135 : -124 AAAAAAaGGTTA AC RSP00467 Mean Expected Number 0.003 -strand -138 : -147 TGGTCAATTT AC RSP00467 Mean Expected Number 0.003 -strand -159 : -168 TGGTCAATTT AC RSP00468 Mean Expected Number 0.001 -strand -137 : -147 TTGGTCAATTT AC RSP00468 Mean Expected Number 0.001 -strand -158 : -168 TTGGTCAATTT AC RSP00653 Mean Expected Number 0.002 +strand +12 : +22 cTCTCTCTCCT AC RSP00745 Mean Expected Number 0.001 +strand -132 : -121 aAAAGGTTATTT AC RSP00861 Mean Expected Number 0.001 -strand +8 : -1 AGAAAGAGA AC RSP00865 Mean Expected Number 0.000 -strand +21 : +13 GGAGAGAGA AC RSP01482 Mean Expected Number 0.001 +strand -168 : -158 aAATTGACCAA AC RSP01482 Mean Expected Number 0.001 +strand -147 : -137 aAATTGACCAA AC RSP01517 Mean Expected Number 0.000 -strand -71 : -98 GATCCGAA-- ** bp --CCAAT AC RSP01642 Mean Expected Number 0.005 +strand +25 : +34 AAATGTCTCg Totally 13 motifs of 10 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1368. Group RE: Type III element /AC: RSP01517//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Type III element /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: MIOX2 |LOCUS: AT2G19800 |PROD: expressed protein |complement(8537986..8540533) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.35 C - 0.21 1 attacacgct tctaaaacga gcgtgagttt tggttataac gaagatacgg 51 tgaagtgtga cacctttcta cgttaatttc agtttgagga cacaactcaa 101 gttatgtttg atatctaagg acttgcactg tctccaaatc tgcaggaagg 151 actttttgat tggatcaaTA TAAATAccat ctccattctc gtctccttcc 201 AACAACATCT TTCACACAAC AATTCACACA ATTTCTCGTT TTTTTTTGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.009 -strand -21 : -28 ATGGTATT AC RSP00354 Mean Expected Number 0.006 -strand -126 : -133 TAACGTAG AC RSP00509 Mean Expected Number 0.001 +strand -32 : -21 TATAAATACCAt Totally 3 motifs of 3 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: COV1 |LOCUS: AT2G20120 |PROD: expressed protein, contains Pfam domain |complement(8694435..8696551) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.14 T - 0.27 C - 0.11 1 acgatgaatg tatatgattt caagtagaac aaataaattt ttgatatatt 51 aattcacaac aataaaatta atcttttcat cttttgaaaa taatttgtat 101 acagtaattt gaaacaaaaa ttaatcatgt tataattaag aaaaggataa 151 ataaaagaag acagaTATAA AAAgaaaaat ccaaaaacga cagagagctc 201 AAGTTGGAGT TAGCTAAGCT TAGCTACAAA AGAACAGTCG CCGGCAAAAG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glutaredoxin family protein |LOCUS: AT2G20270 |PROD: the same as GENE |complement(8744786..8746741) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.31 C - 0.10 1 tttctttgtt gttgttaatt ttatcatgat gtgtaaataa aaggtcgtaa 51 acttactaga gaaaataaaa actacagaaa tgtattaaaa acaaagaatt 101 ttaaTCAATt cttatgaata tttagttgtt ttattgatat ttataaataa 151 agaacaaaaa atatcggcga TATAAAAAga ggtaaattaa tctgagggca 201 AAAATAAGAA AAGCATCCAA TTTCGTCGGA AGAAGAAATC GCCATGGTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00934 Mean Expected Number 0.003 +strand -83 : -74 ATATTTAGTT Totally 1 motifs of 1 different REs have been found Description of REs found 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20670 |PROD: the same as GENE |complement(8918941..8920615) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.36 C - 0.27 1 agctcacgag attagtcatg ctgacatggg aactagctgt cttgagcaat 51 cattcatctc tcagatctta cacgtcctcc aatcacagtt tcacacgtca 101 ccattcgcgg cgccatgtat ctgcttctct gatttctgat aggtcccatt 151 ttattctctc ccacctacta TATAAACTcc catttttcct ttgtttttct 201 TCAACCCAAA CAAAAAAACA TTTTTTCTCT ATAAATCCTT TATTATTGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.003 +strand -109 : -102 CACACGTC AC RSP00142 Mean Expected Number 0.001 -strand -89 : -95 CGCCGCG AC RSP00635 Mean Expected Number 0.002 +strand -59 : -52 GGTCCCAT AC RSP00817 Mean Expected Number 0.004 +strand -132 : -123 TACACGTcCT AC RSP00913 Mean Expected Number 0.000 +strand -181 : -172 GCTGACATGG AC RSP00931 Mean Expected Number 0.009 -strand -58 : -63 CCTATC AC RSP00997 Mean Expected Number 0.006 -strand -99 : -108 GGTGACGTGT AC RSP01007 Mean Expected Number 0.003 -strand -57 : -63 ACCTATC AC RSP01258 Mean Expected Number 0.003 -strand -101 : -108 TGACGTGT AC RSP01654 Mean Expected Number 0.009 -strand -99 : -108 GGTGACGTGT Totally 10 motifs of 10 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 860. Group RE: H-box IV /AC: RSP00931//OS: French Phaseolus vulgaris /GENE: CHS/RE: H-box IV /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G21130 |PROD: the same as GENE |complement(9062479..9063313) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.25 C - 0.24 1 ggaaataagt aaaaaagtaa attggggttt gcaacattac agagcaacaa 51 cacgtgtcga cctcgggatg gacaattcga gagcatttac cgtggtcaaa 101 aactcaacct aaccacggtt caagaaACAA Tggagatatc gacacgtgtc 151 tcaaTCTAAA TAcccgatga tattatctca cagatattcg cttcctctat 201 AAATATCTTC TCTTCGTCCT CAACAGCTTC TCCAGAAAAT CTAGGTCACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -197 : -186 AAtAAGTAAAAA AC RSP00143 Mean Expected Number 0.002 +strand -60 : -51 GACaCGTGTC AC RSP00143 Mean Expected Number 0.004 -strand -51 : -60 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -60 : -51 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -51 : -60 GACACGTGtC AC RSP00206 Mean Expected Number 0.001 -strand -20 : -31 GTGAGaTAATAT AC RSP00233 Mean Expected Number 0.007 +strand +40 : +49 TCTAgGTCAC AC RSP00524 Mean Expected Number 0.009 -strand -52 : -58 ACACGTG AC RSP00524 Mean Expected Number 0.009 -strand -144 : -150 ACACGTG AC RSP01035 Mean Expected Number 0.009 +strand -149 : -143 ACGTGTC AC RSP01035 Mean Expected Number 0.009 +strand -57 : -51 ACGTGTC AC RSP01167 Mean Expected Number 0.003 +strand -1 : +8 TAAATATCT AC RSP01190 Mean Expected Number 0.003 +strand -88 : -79 CCACGGTTCA AC RSP01256 Mean Expected Number 0.003 +strand -151 : -144 ACACGTGT AC RSP01256 Mean Expected Number 0.003 +strand -59 : -52 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -52 : -59 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -144 : -151 ACACGTGT AC RSP01296 Mean Expected Number 0.004 +strand -4 : +5 CTATAAATA AC RSP01602 Mean Expected Number 0.006 +strand -52 : -45 TCTCAATC Totally 19 motifs of 12 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 199. Group TF: GT-1 /AC: RSP00206//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II* /TF: GT-1 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G21270 |PROD: the same as GENE |9114631..9117342 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +576 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.31 C - 0.20 1 tatctgctca gaattgagag tttcccagta tggtaagttg gtaacgcaca 51 cgtcaatata aagtggtcat gattcctcac tattcgaggc ccaatgggct 101 agtaccgttt tttgtgaagc ccaaactgtt ttacaaagac atgaaTCAAT 151 acgcaccgta tgggTATATA TAtatacaag caacgttatc acaggtcctc 201 AAAGTTTGCA TCTTTACTTG GGTTGTGTCT GGAATCAATT ACTTCCTAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.002 +strand -154 : -147 CACACGTC AC RSP01258 Mean Expected Number 0.003 -strand -146 : -153 TGACGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G21655 |PROD: the same as GENE |9270617..9271178 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.49 G - 0.13 T - 0.30 C - 0.08 1 aaattgaaat gcattaaaga ataatattta taagggtata aaacgtcaaa 51 agatgtaaat tatgttgata actaataaga tattgttggt gagagataaa 101 taaaaaaaga tgttattttt actattaaag agttactaaa taataatgtt 151 aatgaacatt cgacacTATA AATAcacgca taaatcctca ttggtaaaac 201 AAAAACAAAG AAAATCAATT AAGAATAAAA TATCAAAATA TTTTAAAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.010 -strand -108 : -113 CTCACC AC RSP00932 Mean Expected Number 0.001 +strand -63 : -48 AAATAATAaTGTTAAT AC RSP01301 Mean Expected Number 0.001 +strand -35 : -26 CTATAAATAC AC RSP01632 Mean Expected Number 0.001 -strand -182 : -192 CTTTAATGCAT Totally 4 motifs of 4 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 861. Group RE: AT-1 /AC: RSP00932//OS: Pinus sylvestris /GENE: GS1a/RE: AT-1 /TF: unknown 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATGRP7 |LOCUS: AT2G21660 |PROD: glycine-rich RNA-binding protein (GRP7) |complement(9272329..9273453) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.30 C - 0.27 1 gcatcgtcgt ctttccattt gcgcattaaa ccaaaaagtg tcacgtgata 51 tgtccccaac cactacgaat tttaactaca gatttaacca tggttaaacc 101 agaattcacg taaaccgact ctaaacctag aaaatatcta aaccttggtt 151 aatatctcag ccccctTATA AATAacgaga cttcgtctac atcgttctac 201 ACATCTCACT GCTCACTACT CTCACTGTAA TCCCTTAGAT CTTCTTTTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00892 Mean Expected Number 0.005 +strand -52 : -44 TTAATATCT AC RSP00947 Mean Expected Number 0.008 +strand -54 : -48 GGTTAAT AC RSP00966 Mean Expected Number 0.001 +strand -161 : -152 GtCACGTGAT AC RSP01013 Mean Expected Number 0.009 -strand -180 : -189 CAAATGGAaA AC RSP01435 Mean Expected Number 0.001 +strand -148 : -139 TCCCCAACCA AC RSP01699 Mean Expected Number 0.007 +strand -158 : -152 ACGTGAT Totally 6 motifs of 6 different REs have been found Description of REs found 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 876. Group TF: GT-2 /AC: RSP00947//OS: Oryza sativa /GENE: PHYA/RE: GT1-bx /TF: GT-2 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G22122 |PROD: the same as GENE |9410344..9410888 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.30 C - 0.18 1 tttttaacta ttttaaattc ggcgaaatgg gtcaaagtca gacaatgaat 51 cgattaaagt taaggaaaat aaaaaaattc aagggataaa gagaatgagc 101 atggagaagc ataatgatga gaatggaatc atatccaacg gccataaagc 151 ataagtcctt tctcTATAAA TTacgacaac ttctcttcat cattataacc 201 AAACTCATCC TTCACTTCAT TATTCCTTTA ACCACACATT CTCTTTGTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00255 Mean Expected Number 0.001 +strand +3 : +11 ACTCATCCT AC RSP00445 Mean Expected Number 0.009 -strand +49 : +40 AAcAAAGAGA AC RSP00534 Mean Expected Number 0.001 +strand -90 : -78 ATAATGATGAgAA AC RSP01497 Mean Expected Number 0.001 -strand -59 : -68 GCCGTtGGAT Totally 4 motifs of 4 different REs have been found Description of REs found 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G22475 |PROD: the same as GENE |9548481..9552090 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.27 C - 0.17 1 tcaaaacatc aaaggtattg atcttacata gaaaaaaaca tagactctta 51 tgttcatgtc cctattgatc ttagtcatac ctcataattg tctaacaaag 101 aaaatcaaag gtatcataat tatcatcata tgtaatgtag ggaacaaatc 151 tgtatttact ggTATATATA tataacacaa aaaaaattac caaagaaaaa 201 AAAAGAGCAA AGGGAACGAT ACCATTAGTC CCAATACCAA TCCTTGCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.001 -strand -31 : -42 TATAtATACCAG Totally 1 motifs of 1 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G24440 |PROD: the same as GENE |10398169..10400326 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.30 C - 0.17 1 cacgcctttt attatcacag cgaccataat cgaacagtgt cagtgtcttt 51 attattcatc agttaatctt gactgtccat taaaaatttg atgacgtgtc 101 cttccaaggt aacttttaac cttctaacgt ctttttaact aaagtaaaag 151 taaaaaTATA AAAAaagtga aatatctaga gagagacaga gagcccattt 201 GGTGCGGAGG TTGACAGAGC TTTAGTTCCG TACAAATGGC GAGTAAGAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 +strand -56 : -45 tAAAAGTAAAAA AC RSP00022 Mean Expected Number 0.006 -strand -186 : -194 ATAATAAAA AC RSP00460 Mean Expected Number 0.005 -strand -101 : -110 GACAcGTCAT AC RSP00741 Mean Expected Number 0.001 -strand -76 : -87 AgAAGGTTAAAA AC RSP00864 Mean Expected Number 0.001 +strand -23 : -15 AGAGAGAGA AC RSP00916 Mean Expected Number 0.003 +strand -111 : -102 GATGACGTGT AC RSP00987 Mean Expected Number 0.005 +strand -183 : -174 CAGCgACCAT AC RSP00997 Mean Expected Number 0.003 +strand -111 : -102 GATGACGTGT AC RSP01035 Mean Expected Number 0.008 +strand -107 : -101 ACGTGTC AC RSP01258 Mean Expected Number 0.003 +strand -109 : -102 TGACGTGT AC RSP01640 Mean Expected Number 0.007 -strand -10 : -19 CTcTGTCTCT AC RSP01654 Mean Expected Number 0.007 +strand -111 : -102 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 +strand -111 : -100 GATGACGTGTCc AC RSP01767 Mean Expected Number 0.009 +strand -120 : -112 TAAAAATTT Totally 14 motifs of 14 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: WRKY60 |LOCUS: AT2G25000 |PROD: WRKY family transcription factor |10636829..10638485 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.34 C - 0.18 1 taaaaacttt taaaggtttt aaagaaagtt tatgagaatt tacaagaatt 51 gtaaaagatt tataataatt tttttagaat tagaaaggag accctcattt 101 tccacccaaa tcgtcaacct tctcataATT GAcaagttat tacactctct 151 ccacttacta gttacTATAA AACcaaagga gaccaaatct cttagcaatt 201 ATGAATTTGG TCTTCGCTAT AATCTCACGT TACATTAAAT TGGCTCCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.007 +strand -151 : -144 TGTAAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protein phosphatase 2C, putative / PP2C, putative |LOCUS: AT2G25070 |PROD: the same as GENE |complement(10670319..10673043) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +598 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.34 C - 0.15 1 gctgtttaca atgacgatta cacacattct taaagctgtg atgacgaatc 51 agagaaagct ttaaacagct gtaaagatta cacatctcaa gttttagtta 101 agtaagttat taacaagaaa aagttttgaa aaaagtaaag acctttaata 151 gttttctttt ctcggacaaa acAATAAATA aaaagaacac acttttttta 201 TCTTTTGTCC TTAGGATTTG ATTGTACATA CATCTGATCT CAAGTGATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.009 -strand -3 : -12 AAaAAAGTGT AC RSP01618 Mean Expected Number 0.000 +strand -177 : -164 ACaTTCTTAAAGCT Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 1438. Group TF: GmDof4 /AC: RSP01618//OS: Glycine max /GENE: Synthetic OLIGO/RE: E1 /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25510 |PROD: the same as GENE |10863505..10864234 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +345 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.34 C - 0.20 1 cttttcacca aataatacaa caaaaacttc gagactcata aaataagtga 51 tccaactaag tcgtcgatga ctataagctt ttaagtctct cgctagactg 101 tccacagatt tcttcatctt ctttgtctct tagcctttct atattatcca 151 ccatatcTTT AAATTtcttt tataatttgc tgtatagcct atataaatgc 201 ATAACCATGA GTGACACTAA TAAGCAAAAT AAGAGGGAAT ATTAAGATGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.009 +strand -7 : +1 TAAATGCA AC RSP01640 Mean Expected Number 0.006 +strand -80 : -71 CTtTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: DNA-binding storekeeper protein-related |LOCUS: AT2G25650 |PROD: the same as GENE |10921664..10923294 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +179 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.20 1 attttctgtt gcaggcaaca ctgctttcca aattttgtga ttttctctca 51 acagtcaccg atatttggca ctttattagt aagatgggct tgcgcagccc 101 gctaatatAT TGCtcctttc tgtaacaaaa agtacaaaag taacaaaatc 151 cactcctatc gattatacTA TAAAACagaa gtgcagagaa aatttcagtc 201 ATGATATTTT TTGACCAGCT CGATTCAGAA ATTTGGAAAG ACTAGCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 +strand -74 : -63 AAAAAGTAcAAA Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25670 |PROD: the same as GENE |complement(10935742..10938135) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +438 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.34 C - 0.22 1 taagtatttt actattttcc caatttgaat cctttgtatt tccaatagtt 51 tcttttaacc cccagaaatg tttgggctaa actgtatcat cctaaaacac 101 attgatcaaa accaagaaaa cataaATTGT taggtatcaa aacgtaaatt 151 aacataacca aTATAAATTc agagacacga gctttttaat ggcttctctc 201 CTCGCGTTAT CTCCTTTTGT CGATTTAGCC CTAACCTATA CGGCTGCTAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.003 -strand -65 : -74 TACCTAaCAA AC RSP00716 Mean Expected Number 0.003 +strand -94 : -86 CAAAACCAA AC RSP01008 Mean Expected Number 0.005 -strand -66 : -72 ACCTAAC AC RSP01086 Mean Expected Number 0.005 -strand -53 : -62 TTTACGTTTt AC RSP01641 Mean Expected Number 0.002 -strand -21 : -30 TCgTGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: patatin, putative |LOCUS: AT2G26560 |PROD: the same as GENE |complement(11300847..11302881) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.25 C - 0.19 1 gaagtaaaga ggctcacgaa aagtccatgt tgtctacaaa ggaagaaaca 51 agaaccaata gaattagagt tcaaaccaaa ggacgaagta tgcaagttaa 101 tttgacaagc taatatccta agaatgaaga catggtctaa ctttgaaaca 151 gcagccacta gtgtccTATA AATAcataga gttcattaac ctctcataat 201 ATCTCACAAT CAAAGTTCTA TCTCCTCAAG TATCAATACA TTGATATCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00440 Mean Expected Number 0.001 -strand -175 : -183 GGACTTTTC AC RSP00442 Mean Expected Number 0.006 +strand -63 : -54 TAACTTTGaA AC RSP00653 Mean Expected Number 0.001 +strand +16 : +26 TTCTaTCTCCT AC RSP01296 Mean Expected Number 0.008 +strand -35 : -27 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -35 : -26 CTATAAATAC AC RSP01600 Mean Expected Number 0.007 -strand -53 : -60 TTTCAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S acidic ribosomal protein P2 (RPP2B) |LOCUS: AT2G27710 |PROD: the same as GENE |11823849..11824944 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.29 C - 0.22 1 tataaagttt gcaaaagaaa taggttttta ttgactgaag aattgagaaa 51 ttttctcatc acctttaaaa ttaatattgg gcctagcgat gaaccgggcc 101 aacgcccatt aaacatatcc gataatagtt taaacccgga gagactcaaa 151 gtagagaaaa ccctaattgt aTATAAACTa aaaatacttc cttaattctt 201 CACTTCTTCA TCGCCGTCTG CACAAAACCC TAATCTCACA ATCTCCTACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.006 +strand -38 : -28 CTAATTGTaTA AC RSP00279 Mean Expected Number 0.004 -strand +33 : +25 TTAGGGTTT AC RSP00279 Mean Expected Number 0.004 -strand -35 : -43 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand -43 : -35 AAACCCTAA AC RSP00369 Mean Expected Number 0.004 +strand +25 : +33 AAACCCTAA AC RSP00961 Mean Expected Number 0.005 +strand -191 : -184 TGCAAAAG AC RSP01303 Mean Expected Number 0.009 +strand -44 : -35 aAAACCCTAA AC RSP01303 Mean Expected Number 0.009 +strand +24 : +33 aAAACCCTAA Totally 8 motifs of 5 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S acidic ribosomal protein P2 (RPP2A) |LOCUS: AT2G27720 |PROD: the same as GENE |11825568..11826655 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +205 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.31 C - 0.17 1 aggtgctata gaagacgagg ttagaggtga aatcccatcc atcaaacaaa 51 ataaaactag agaattgtat aatctggtcg ttctcttctc aacatcaata 101 ttacccgTCA ATcgaaatat tgagcccata taaatatggg cttgaaagaa 151 ctgggcctaa ataaaatTTT AAATTcggag atacattgat aagattaaaa 201 ACCCTAAGCG TATATAAATC ATATAGTTTT CATTTTTTCG TACTTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +7 : -2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -2 : +7 AAACCCTAA AC RSP01303 Mean Expected Number 0.005 +strand -3 : +7 aAAACCCTAA AC RSP01458 Mean Expected Number 0.004 -strand -27 : -39 ATTTAAAAtTTTA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: auxin-responsive family protein |LOCUS: AT2G28085 |PROD: the same as GENE |complement(11975197..11975697) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.31 C - 0.24 1 aaatgaaaac aaattttcaa cttaagaaat ggaaaccgct gtcatggaaa 51 attcaaaaga aggcaaatta agcaaccaac gcagccacat gctttggtct 101 cccttactca cttctccttc ttatttcttc ctcttctttc ttatcctctt 151 tgtaccattc ctactTATAT ATActccttc ttacatgtct atattcgaac 201 ATATACTTTT CAAACAAACA AAAAAAAACC TCAAAAAAAG GAAAATATCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.004 -strand +41 : +32 CCTTTTTTTG Totally 1 motifs of 1 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G28305 |PROD: the same as GENE |12088190..12091741 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.35 C - 0.17 1 tcttaaccat ttctaatcta tttattatgg aagaatgtca aactcgtgtt 51 ataaaaaaaa gaatgtcaaa ctcatgtagc cactatttat ttattttaaa 101 agtttctttt tatgatatta ctattaggaa gcgtatgagc taggtatata 151 ccccaccgcc caatattcTA TATATAtgag caaagaacat tcataccaac 201 ATCACAACGA GAAAGATAGA TTCATCTTTC AATCTTTTTT TATCTTAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01030 Mean Expected Number 0.010 -strand -94 : -101 AGAAACTT Totally 1 motifs of 1 different REs have been found Description of REs found 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: LCR5 |LOCUS: AT2G28355 |PROD: expressed protein |12126397..12127331 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.33 C - 0.12 1 taagtagtgt gttgttttaa tttaattaaa aaatatttat agtgaaggag 51 aaagcaggag cgagtttaaa gctctaagcc tctaacctat ataagaaata 101 tttaaggtca aactagatcc ctaaattcag acatatagct taaaatagaa 151 acatccaatt gatTATAAAT Atcaccacat tttgttaagt taaaaaaact 201 ATATAAAAAA AAAACTTATT TTGTTCATTC TTTTAAGTTT AAAAACAGTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00535 Mean Expected Number 0.001 +strand -123 : -108 GCCT-- +6 bp --TATATA AC RSP01296 Mean Expected Number 0.009 -strand -159 : -167 CTATAAATA Totally 2 motifs of 2 different REs have been found Description of REs found 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G28410 |PROD: the same as GENE |12163207..12164006 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.29 C - 0.22 1 caaaagattt caggaccatg gaaacagaga aaaagtaaaa attatgttgg 51 gaaaaggtag agaaatcatg agaaatcata ttgttccctt atgtaaatgt 101 cttatctttt tcacccacca gattattatt aTCAATccca agcaacaacc 151 actttatttc acatcacctT ATAAATAcca actttcttca tagtctcaac 201 AAATACACTA CACTACTCAA CTTATAACCT TTCTACACTT TCAAGAAACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -171 : -160 AAAAAGTAAAAA AC RSP00227 Mean Expected Number 0.003 -strand -93 : -101 AAGATAAGA AC RSP00254 Mean Expected Number 0.005 -strand -144 : -150 CCTTTTC AC RSP00331 Mean Expected Number 0.004 -strand -176 : -184 GTTTCCATG AC RSP00509 Mean Expected Number 0.003 +strand -31 : -20 TATAAATACCAa AC RSP00792 Mean Expected Number 0.000 +strand -63 : -54 CCAAGCAACA Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATEXPA6 |LOCUS: AT2G28950 |PROD: expansin, putative (EXP6) |complement(12438418..12440672) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.30 C - 0.20 1 ggatttgtac gcatgacttt ttttacacat acaaataatt gtaaaacttt 51 tgtcaaaaac ccaaatcgtg tttagtaatc tctattcata agctagagaa 101 ctatgacccc tagaggttaa acttttgtaa tgataaagaa agagaataat 151 acaaagcaag agaAATAAAT Aaatgcttaa gtcccaattt atatatagtc 201 ACCTCTCTAT ACCCTTCCCT ACACACATGG AGACACTCCA ATAAACTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 +strand -64 : -56 AGAAAGAGA AC RSP01013 Mean Expected Number 0.005 +strand +24 : +33 CAcATGGAGA AC RSP01621 Mean Expected Number 0.008 +strand -83 : -74 TAaACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATGSTU7 |LOCUS: AT2G29420 |PROD: glutathione S-transferase, putative |complement(12625013..12625976) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.31 C - 0.23 1 agcagactca tctcctaggt tcccacaccc cttaacttat ttgaccaaac 51 ctttcttcat ttaaacaact caacttcaat ctctatcttc cgatgtggga 101 caaagtgctt tcttactgaa gcatttATTG Taacttgttc gtcactggtg 151 acgtcaccat tctttctTAT AAATAaatca taacctatta accttagtcc 201 ATAAAGAAGA AGAAGCTAAC GAAAAATAAT GGCGGAGAGA TCAAATTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01014 Mean Expected Number 0.009 -strand -138 : -147 tAAATGAAGA AC RSP01654 Mean Expected Number 0.004 +strand -54 : -45 GGTGACGTCA AC RSP01654 Mean Expected Number 0.009 -strand -43 : -52 GGTGACGTCA AC RSP01680 Mean Expected Number 0.000 -strand -100 : -110 GTCCCACATCG AC RSP01730 Mean Expected Number 0.000 +strand -54 : -43 GGTGACGTCACC AC RSP01730 Mean Expected Number 0.000 -strand -43 : -54 GGTGACGTCAcC Totally 6 motifs of 4 different REs have been found Description of REs found 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1498. Group TF: PpSBP2 /AC: RSP01680//OS: Arabidopsis thaliana; Glycine max /GENE: U2 & U5 (At); U1a & U1b (Gm)/RE: -80 element (cons) /TF: PpSBP2 1538. Group TF: STF1/HY5 /AC: RSP01730//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CRE (G/A): /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATGSTU5 |LOCUS: AT2G29450 |PROD: glutathione S-transferase (103-1A) |complement(12631663..12632711) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.24 C - 0.20 1 cttactaaaa aagagataaa aaaaaattat aaagggaacg ttataaatat 51 gttgtaaagt caacatctgt ttccttctag actcttcgca tttacatcac 101 actgccgacc atataaaacg gcaaagttcg tcgtcgtttt atcacaagac 151 catcaacacc ataaggcTAT AAATCcaagc taaaaggtag tgattaactc 201 CACAAAACCA GAAAAAACTA CATTTCTAAC ATATAGAAGA AACAGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 +strand -194 : -185 AAAAAAGAGA AC RSP00495 Mean Expected Number 0.005 +strand -148 : -141 TGTAAAGT AC RSP00918 Mean Expected Number 0.009 -strand -137 : -146 GTTGACTTTA AC RSP00933 Mean Expected Number 0.001 -strand -168 : -180 TTTATAATTTTTT Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G29500 |PROD: the same as GENE |complement(12640180..12640882) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.29 C - 0.22 1 tatttgtcta aagcccatga aggcccatta aacccaacga acacaaacaa 51 tcttcaaaat gctcctagaa ttttctggat tcacctgatt tttctcatag 101 acgtcctcta gatgtttctg tattccccat aacaactcga gaagctcgag 151 aaatttcggt tagtaccTTT AAATAgcttc aaaaatcctt cgtgtgttct 201 ATCAGAAATC GAAAAATCAA AGTTCTCAAG AAGATATCAA CAAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.006 -strand -108 : -115 AAAAATCA AC RSP01016 Mean Expected Number 0.005 -strand -82 : -89 AGAAACAT Totally 2 motifs of 2 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: TUB7 |LOCUS: AT2G29550 |PROD: tubulin beta-7 chain (TUB7) |complement(12651124..12653114) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.09 T - 0.37 C - 0.27 1 gtcattcaca cgaacatatt tttttacgaa attcaaaaaa actttttatc 51 acgagccatt aatttttgaa ttttgccacc cgttgccacc tcgatttacg 101 tggcattatc taaaccgtcg attcgatttc gaattaccaa atattagccg 151 ttaaaacctc cttttcttTA TAAATGgacc ctcctcttct tctctctctc 201 ATAAAACAAA AGATCCTCTC TGCTTCTCCT TTCCCTTTTT CAAAATCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.000 +strand -104 : -97 TACGTGGC AC RSP00051 Mean Expected Number 0.001 -strand -97 : -106 GCCACGTAaA AC RSP00132 Mean Expected Number 0.003 +strand -116 : -109 GCCACCTC AC RSP00247 Mean Expected Number 0.002 -strand -97 : -106 GCCACGTAAa AC RSP00864 Mean Expected Number 0.009 -strand -2 : -10 AGAGAGAGA AC RSP01034 Mean Expected Number 0.001 +strand -103 : -97 ACGTGGC AC RSP01104 Mean Expected Number 0.009 +strand -47 : -40 AAACCTCC Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G29995 |PROD: the same as GENE |complement(12803987..12806496) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.19 T - 0.32 C - 0.11 1 atttttaaaa tttttgttaa agttaattct aaagtatttg gggggtttac 51 gtcaatcttg gcatacctac caaatgtaaa tgcatcatgt tgttaaaaaa 101 aagcaaaata tgtcttaaaa tgttataaag ttatgcgctt gaagcaacta 151 taataaataa aaaaagTATA TATAatttaa caaagtcttc gagactaaag 201 GCCGGTGTGA GACGTTTTGT GGCGTCTATA AATATACAAG AGGTGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.003 -strand -147 : -154 TGACGTAA AC RSP00163 Mean Expected Number 0.004 -strand +1 : -10 CCTTTaGTCTC AC RSP00489 Mean Expected Number 0.003 +strand -137 : -128 TACCTACCAA AC RSP00680 Mean Expected Number 0.008 +strand -23 : -14 TAACAaAGTC AC RSP01296 Mean Expected Number 0.007 +strand +26 : +34 CTATAAATA AC RSP01453 Mean Expected Number 0.002 +strand -136 : -130 ACCTACC AC RSP01657 Mean Expected Number 0.000 -strand -145 : -156 aTTGACGTAAAC Totally 7 motifs of 7 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1475. Group TF: HY5 /AC: RSP01657//OS: Arabidopsis thaliana /GENE: MP/ARF5 (At1g19850)/RE: C/A-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ASL5 |LOCUS: AT2G30130 |PROD: |12875707..12876801 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.30 C - 0.20 1 tgagaagaac aagaaaaact aagaataggt gttttcatat ttaggttaaa 51 taataaaaca tttaaagtta agacattaat tataacacac aaaaaattaa 101 agttggaatt aaatgaacac atgtgaacac caacctcgct ctctctagaa 151 agccttcaaa accctatTAT AAATAcacac ctctcaaact ctctcccttt 201 AACTCTAAGT TTTTCTTTCT TCTTTCTCTG CTCTCAAAGC TCAAGAGAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.002 -strand +20 : +12 AGAAAGAAA AC RSP01469 Mean Expected Number 0.008 -strand -75 : -84 TCACATGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glutaredoxin family protein |LOCUS: AT2G30540 |PROD: the same as GENE |complement(13018182..13018861) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +217 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.35 C - 0.20 1 tgattatgca acttttgttg gtccttcctt actaatataa tatgaattaa 51 agaggaaaac aaaatattaa caaagtcact ttaatgtact tggggaacct 101 ttagctagat ctcctgtgat ctctcttttt ttggtctcta acattctttt 151 cttctttctt tctttgctTA TAAATAgcat atggttcaag aaactcaagt 201 CTCAGGCAAC ACTGAGCTTA ATACTGTAGT ACACACACAC ACACACACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 -strand -37 : -50 AAGAAAGAAAGAAG AC RSP00445 Mean Expected Number 0.002 -strand -70 : -79 AAAAAAGAGA AC RSP00447 Mean Expected Number 0.008 -strand -33 : -42 AGCAAAGaAA AC RSP00680 Mean Expected Number 0.007 +strand -133 : -124 TAACAaAGTC AC RSP00860 Mean Expected Number 0.007 -strand -38 : -46 AGAAAGAAA AC RSP01032 Mean Expected Number 0.007 -strand -67 : -76 CCAAAAAAAG AC RSP01093 Mean Expected Number 0.003 -strand -29 : -39 TaTAAGCAAAG AC RSP01209 Mean Expected Number 0.007 +strand -189 : -180 CTTTTGTTGG AC RSP01209 Mean Expected Number 0.007 +strand -76 : -67 CTTTTTTTGG AC RSP01527 Mean Expected Number 0.002 +strand -15 : -4 TCAAgAAACTCA Totally 10 motifs of 9 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATGSTF10 |LOCUS: AT2G30870 |PROD: glutathione S-transferase, putative |13148527..13150296 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.26 C - 0.22 1 atttcgtgct gagaaaagtc aaatatgacg tgaaacgttg ccgccactag 51 ctagccgcca cctataccga cacgtataaa taataatata ctaataagtg 101 cgactgcgtt tagcctacta ccgcaaacgc agctaaccag atcccttttt 151 ctctctcttt tctttccctc TATAAAATcg cgtcctgcta tagtgagttt 201 AGAAAGAAAC TGATAGTAGA AAAAAAAAGA GAGAAGAAAA ATGGTGTTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.006 +strand -148 : -142 AGCCGCC AC RSP00068 Mean Expected Number 0.008 +strand -132 : -123 GACACGTAtA AC RSP00070 Mean Expected Number 0.004 -strand -125 : -132 TACGTGTC AC RSP00397 Mean Expected Number 0.002 -strand -153 : -160 AGTGGCGG AC RSP00445 Mean Expected Number 0.001 +strand +23 : +32 AAAAAAGAGA AC RSP00445 Mean Expected Number 0.005 -strand -38 : -47 AgAAAAGAGA AC RSP00503 Mean Expected Number 0.003 +strand -154 : -147 CTAGCTAG AC RSP00503 Mean Expected Number 0.003 -strand -147 : -154 CTAGCTAG AC RSP00653 Mean Expected Number 0.001 +strand -52 : -42 TTCTCTCTCtT AC RSP00860 Mean Expected Number 0.004 +strand +1 : +9 AGAAAGAAA AC RSP00864 Mean Expected Number 0.001 -strand -43 : -51 AGAGAGAGA AC RSP01275 Mean Expected Number 0.003 -strand -167 : -176 TtCACGTCAT AC RSP01288 Mean Expected Number 0.006 -strand -124 : -131 ATACGTGT Totally 13 motifs of 11 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CLE6 |LOCUS: AT2G31085 |PROD: Clavata3 / ESR-Related-6 (CLE6) |13261255..13261783 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.11 T - 0.39 C - 0.24 1 gcatatatga tgagtttctc ttttcaactc atgcatgagt tttataatcc 51 aaaatatgcg taggattcgg ctttcattaa tttctgttgt ggatcccatc 101 atgttctctc cactggccca aactatatcc ttaacctgtt cccgttttat 151 gtttgtgtct ttaattatcT ATAAATAgaa aatctcaaca catacaagtc 201 ATCATACTCT CTCAACTTCA TCTCTCTCTC TCTCTCAATC TCTTAAGATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.003 +strand -35 : -20 TaTCTATAAATAGAAA AC RSP00085 Mean Expected Number 0.003 -strand -20 : -35 TTTCTATTTATAGAtA AC RSP00108 Mean Expected Number 0.002 +strand -171 : -164 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -164 : -171 CATGCATG AC RSP00450 Mean Expected Number 0.001 +strand -153 : -142 TCcAAAATATGC AC RSP00864 Mean Expected Number 0.007 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +31 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +29 : +21 AGAGAGAGA AC RSP00997 Mean Expected Number 0.005 -strand +3 : -7 GATGACTTGT AC RSP01032 Mean Expected Number 0.004 +strand -152 : -143 CCAAAATATG AC RSP01283 Mean Expected Number 0.000 -strand +36 : +20 GAGAGAGAGAGAGAGAt AC RSP01296 Mean Expected Number 0.004 +strand -32 : -24 CTATAAATA AC RSP01470 Mean Expected Number 0.009 +strand -172 : -163 TCATGCATGa AC RSP01470 Mean Expected Number 0.005 -strand -163 : -172 TCATGCATGa Totally 15 motifs of 9 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31345 |PROD: the same as GENE |complement(13372309..13372877) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.29 C - 0.16 1 ctaagtgaat tttatatttc aaaatccttc aaatttggtt caaaatgttg 51 aaaacgaatt cttttgtagt aaagtcaaag tcaaatttca tgtatgtgtg 101 tgtatacata aacataagat agtgagacca aactagcaca agtcaaacaa 151 tgacatctca aaaacccTAT ATATAtgagt cattatcgaa tttattacac 201 ATACAAAACA AAAACAAAAA AAACTCTACA TTCACCAATA AAAAAGCTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.007 +strand -25 : -19 TGAGTCA AC RSP00460 Mean Expected Number 0.003 -strand -42 : -51 GAgATGTCAT AC RSP00664 Mean Expected Number 0.001 +strand -26 : -18 ATGAGTCAT AC RSP00999 Mean Expected Number 0.003 -strand -76 : -86 TCACTATCTtA AC RSP01278 Mean Expected Number 0.002 +strand -26 : -18 ATGAGTCAT AC RSP01278 Mean Expected Number 0.002 -strand -18 : -26 ATGACTCAT AC RSP01470 Mean Expected Number 0.004 +strand -113 : -104 TCATGtATGT AC RSP01686 Mean Expected Number 0.007 -strand -99 : -104 CACACA AC RSP01686 Mean Expected Number 0.007 -strand -101 : -106 CACACA Totally 9 motifs of 7 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pfkB-type carbohydrate kinase family protein |LOCUS: AT2G31390 |PROD: the same as GENE |complement(13390140..13393286) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.09 T - 0.39 C - 0.21 1 caaatcaaat actcaggcaa aggtcgaaaa acgttaaaag attttttcat 51 tttattaaaa aaaccacaga aactcatggt tttttttacg agatatattt 101 gtatcttata taataaaata cgttaataat atatcagtag caagcctttg 151 tacaccagtc ccatcgttct ctaTATAAAC Cattcttctc cttcctctca 201 TTTTTATGTA TTCTTCTCCT TGTCCTTCCT TACTCTCTAT ATTTTTCTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.001 +strand -173 : -162 AAAAcGTTAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT2G31540 |PROD: the same as GENE |complement(13437714..13439142) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.09 T - 0.29 C - 0.20 1 taacagcatt gtttttcagt tttattttta atcattgggt gaaaagctca 51 tcaatatctc tatttaaact aaaagattca aagctcttga cttatctatt 101 tgttagtcac ttaaaaagga aaaacaaact caacaaagcc agcaaggtaa 151 caaaagaaat ttcacctTAT AAATTcatca ccaaacaaca acatttcttc 201 AAATCCACCA AAAACAAAAA ATGTCGACTT CTAAAGCCAT AACCTTAACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.002 -strand -160 : -165 CACCCA AC RSP01205 Mean Expected Number 0.004 -strand -82 : -91 CCTTTTTAAG Totally 2 motifs of 2 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31945 |PROD: the same as GENE |13588658..13589203 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.32 C - 0.22 1 acgtaaaata ttgaattttc atgttacatg ttctagcaac aatgtttttc 51 tagaaaaaat atgtatggcg tgtgctttca tttgaccgga taaggtcgaa 101 cgatatatgt cctttacttc cacgtctctg cctctggtca aatacgcaag 151 gcgctctctt tctcTATAAA TCttcaatct caaactcatc ttcaaatctt 201 GACACATCCT CAAGAGCGGA AAAAAAATAA AAAAATCTTT ACCACGACCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.006 +strand -82 : -73 TCCACGTCTC AC RSP00340 Mean Expected Number 0.004 +strand -82 : -73 TCCACGTcTC AC RSP00861 Mean Expected Number 0.003 -strand -38 : -46 AGAAAGAGA AC RSP01015 Mean Expected Number 0.001 -strand -117 : -126 CAAATGAAAG AC RSP01250 Mean Expected Number 0.001 -strand -182 : -191 AAAATTCAAT AC RSP01274 Mean Expected Number 0.005 +strand -82 : -73 TCCACGTcTC AC RSP01499 Mean Expected Number 0.006 +strand -83 : -74 TTCCaCGTCT Totally 7 motifs of 7 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: cysteine proteinase inhibitor-related |LOCUS: AT2G31980 |PROD: the same as GENE |complement(13616174..13616979) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.24 C - 0.24 1 ggagcaattc acatatatac gttaaaaagg tgggggctca cttcacgtgg 51 agacttaatt ggatcagaaa agtaacttaa aagatgcgga accccgaagg 101 tgccgatggc atggggaccc attcacgtac acccaaacac aaacaccaac 151 attgcctaaa ctctttctct aTATAAACAc ttctctttct ttttctttct 201 CTCACACAAA AATACAACAA CTTAGATCAG TCTCAAAGGG GGAAAAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.003 -strand -10 : -19 AAgAAAGAGA AC RSP00640 Mean Expected Number 0.001 +strand -158 : -151 TCACGTGG AC RSP00860 Mean Expected Number 0.001 -strand -1 : -9 AGAAAGAAA AC RSP00861 Mean Expected Number 0.001 -strand -11 : -19 AGAAAGAGA AC RSP00874 Mean Expected Number 0.009 +strand +31 : +41 TCTcAAAGGGG AC RSP01734 Mean Expected Number 0.009 -strand -150 : -156 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G32020 |PROD: the same as GENE |complement(13638139..13638845) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.29 C - 0.17 1 aagtccaagg tcaaatatag acaattatcc actcacacga tgacacctca 51 tcttatgtcg tatatttaac actaaataca cttatctata gcaaatggta 101 atatttagtg tttttttagt caaaaGCAAT aagggagaat ctcaaagttt 151 ttcaagatcg cgatgtgTAT AAAGAcatcg cttagacgta gtgatatgat 201 ATCTAAAACA ATCACTAATC CTAAATGGAG ATGGACTCAG AAGAAACTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.003 +strand -158 : -149 aCACCTCATC AC RSP00997 Mean Expected Number 0.003 -strand -149 : -158 GATGAGGTGT AC RSP01013 Mean Expected Number 0.008 +strand +22 : +31 tAAATGGAGA Totally 3 motifs of 3 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ubiquitin-conjugating enzyme, putative |LOCUS: AT2G32790 |PROD: the same as GENE |complement(13912567..13913403) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.33 C - 0.17 1 gagttcctga atatcaaatt ctagctagat tccaccatat atgtaaatac 51 taacattcac cgtatacatc attgttttct ataaactctt taaagttctt 101 gTCAATgatt cgacaaagca ttatatgtaa tttatgtcgt ataagtaaat 151 aaaagaaata ctcaagaaaa aTATAAATAt gagcttaact ataatctaag 201 AAAAGCATAG TCTCTCTCTC TCTCTCTCTC ATAATACATA GAGGAGAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.009 -strand -119 : -129 ATAGAAAaCAA AC RSP00503 Mean Expected Number 0.001 +strand -180 : -173 CTAGCTAG AC RSP00503 Mean Expected Number 0.001 -strand -173 : -180 CTAGCTAG AC RSP00864 Mean Expected Number 0.001 -strand +29 : +21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +19 : +11 AGAGAGAGA AC RSP01093 Mean Expected Number 0.003 +strand -6 : +5 TCTAAGaAAAG AC RSP01283 Mean Expected Number 0.000 -strand +30 : +14 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +28 : +12 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +26 : +10 GAGAGAGAGAGAGAGAc Totally 13 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 50S ribosomal protein L28, chloroplast (CL28) |LOCUS: AT2G33450 |PROD: the same as GENE |14180655..14181609 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.19 1 accacctgtg tctcgttact tttatgtatt agagaatcca agaagggaaa 51 gatgaaacca tactattgtg ttggtggcta tatggaccgg tttgcttact 101 gaaaaATTGT tgtgttaaaa gagaacgtaa ccttctgaat gagaaagcgt 151 ctttcatttt ctacaaaatA ATAAATAaaa tgaacccaat ctccttcttt 201 ATCCAAATCC TCCTTCGAAG CAGAAGTAAC AGCAACCAAA AATGACGACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00969 Mean Expected Number 0.002 +strand +42 : +51 aTGACGACAA AC RSP01015 Mean Expected Number 0.006 -strand -41 : -50 aAAATGAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: dormancy/auxin associated family protein |LOCUS: AT2G33830 |PROD: the same as GENE |complement(14316600..14317417) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.32 C - 0.13 1 ctatgtgcaa gtatataaac ttcatttggt aattaagtta tcaattactt 51 gtcaattatt tctagtctat tatagtattt ctctagatat tttgtgggtc 101 aaataaaaaa tgagagaact agtcgacaaa ggaaaagaga tatttttacg 151 aatagtttaa aaatgagtcT ATAAATTaga tgaaggaagc cctttagtaa 201 GTACTTCACA CTTGACACAA TTCTATCCAA AATCAACCCA AAAAAAGAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.007 +strand -177 : -166 ATTTgGTAATTA AC RSP01014 Mean Expected Number 0.006 -strand -173 : -182 CAAATGAAGt AC RSP01032 Mean Expected Number 0.010 +strand +38 : +47 CCAAAAAAAG AC RSP01209 Mean Expected Number 0.010 -strand +47 : +38 CTTTTTTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G33850 |PROD: the same as GENE |complement(14328138..14329125) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.28 C - 0.28 1 tttctgataa gttaattacg taggcccaaa aagtcgagct accctttgaa 51 aaaatcatct catctcaatg gacacgccat caaccattat caccaattca 101 gtccttattt ccacctaacc atttacactc tatatagtaa gcaaaaggaa 151 aaaaaaaaaa ctttcctata TATAAACAct cccactttct ctcacaaacc 201 CACAACACTG ACTCACATCA TCACCATGGC TTTTTCCACT AGCTCATGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 +strand -59 : -53 CAAAAGG AC RSP00916 Mean Expected Number 0.008 -strand +22 : +13 GATGATGTGA AC RSP01600 Mean Expected Number 0.006 -strand -150 : -157 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protein transport protein sec61, putative |LOCUS: AT2G34250 |PROD: the same as GENE |14469168..14471947 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +546 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.24 C - 0.26 1 atgtcgacac caaatccaaa gcccatttga cccgccttac aaaacaaaac 51 atcggcccaa tctgtgtccc caaaaaaaaa aaacttaaag cagacgtggc 101 agaccctgat tcgttacact atcgtgtcga gcatattttt ctcgcgtcgc 151 cacgatttgg caataccctg agaAATAAAT Aaaaatcgaa aatggattat 201 AAGGTGACCT TCGTCTTTGG TTGACCATCA AAAACTACAA CGCTCTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00208 Mean Expected Number 0.000 -strand -101 : -112 GCCACGTCtGCT AC RSP00248 Mean Expected Number 0.002 -strand -101 : -110 GCCACGTCtG AC RSP00819 Mean Expected Number 0.002 -strand -101 : -110 GCCACGTCTg AC RSP01034 Mean Expected Number 0.005 +strand -107 : -101 ACGTGGC AC RSP01160 Mean Expected Number 0.000 +strand -112 : -101 AgCAGACGTGGC Totally 5 motifs of 5 different REs have been found Description of REs found 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1073. Group RE: G-box /Group TF: CG-1 /AC: RSP01160//OS: Nicotiana plumbaginifolia /GENE: CAB/RE: G-box /TF: CG-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: LHB1B1 |LOCUS: AT2G34430 |PROD: |14531835..14532842 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.26 C - 0.24 1 tctaatttat ctaacacaac tcaattccaa accaaaaatc tgatgccagc 51 tcgacaagac aaaaaatcta agctcaaaaa tgtcaacaac caatagaaat 101 caaggcATTG Acgatatcac gagataagca aattaaatct tcaagttttg 151 caattcatat gtacgtTATA AATAcccaaa aacctcaccg taacctagct 201 ATCCAATTTC ATCACATCTT ATTAACTAAA GAGCCTTTTA CTTGCGCCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.010 -strand -72 : -78 GCTTATC AC RSP00115 Mean Expected Number 0.001 +strand -108 : -98 ATAGAAATCAA AC RSP00543 Mean Expected Number 0.006 +strand -98 : -92 AGGCATT Totally 3 motifs of 3 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT2G34870 |PROD: the same as GENE |14717856..14718532 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.29 C - 0.16 1 aattatgcaa cagccaacat gcgatacaca tgcatttgtt aaatcagttt 51 acttattttc gagttcggta cattcgatgt tatacaacta ttggcaccaa 101 ttaATTGTgt ttgtaaatca ataagaagta cgttgggtgt gaaaaaataa 151 attaatggaa atataggccT ATATATActa acactagata gtcactagac 201 AACAGACACA AAAGCATATA AGCAAAAAAT ACAAAACAAA TTATGGCTTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CTF2A |LOCUS: AT2G35660 |PROD: monooxygenase family protein |14995526..14997505 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.35 C - 0.19 1 acaatgccta tatactactc tccatttgta ttaacacttg agtatctgta 51 accaacgaag ctcagatgtg atcgatatta tttttttaac agtataaaac 101 cacttaacac ttatttagtt tgttgacctc gtggcttcat ATTGActaca 151 gaatgaaata ggtaaacTAT AAAGTctaca ctatttatgg ctgaaattta 201 TTTGAATACA TATCCACCAC TTGTCTTGTT CTTGAAACAC ACGGTCGTGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 +strand +16 : +25 aCCACTTGTC AC RSP00522 Mean Expected Number 0.010 +strand +17 : +23 CCACTTG AC RSP01013 Mean Expected Number 0.008 -strand -173 : -182 CAAATGGAGA AC RSP01527 Mean Expected Number 0.001 -strand -75 : -86 TCAACAAACTaA Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G35710 |PROD: the same as GENE |complement(15017905..15021226) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.41 C - 0.19 1 aacttgttta aagtaaaatt agagcaacct aggaatatat gctcaacttt 51 ttcgttttct tctaattgtt aaaataatgt tgtcattggc cagtcgccat 101 tatacctttt taacccttca cagtctccca gaaacctccc tttctctttg 151 atacattctc tgTATATATA tatatacgcg tatgcgttta cacattcttt 201 AAAAGTTTCA GATTCTAGAT AAATTCTTTT CATTTGATTT GTTTTAGCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00091 Mean Expected Number 0.001 -strand -82 : -93 GAAGGGTTaAAA AC RSP00755 Mean Expected Number 0.009 +strand -170 : -164 AGGAATA AC RSP01104 Mean Expected Number 0.003 +strand -69 : -62 AAACCTCC Totally 3 motifs of 3 different REs have been found Description of REs found 89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown 717. Group RE: submotif A /AC: RSP00755//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif A /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: YLS9 |LOCUS: AT2G35980 |PROD: |15117667..15118550 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.31 C - 0.20 1 aagtaatatt aacatatacg atcttacaaa aagtactcat tattggaagt 51 ttggggcaac atcacaagcc tacaattgca taatattctt tggtcaatta 101 tTCAATcaaa tcaccgcgta acgtgacctt accttaatct aataagttga 151 ccaacgcata aatgaaagtg taTATAAAGA tgacttacat aaacctctta 201 GCCATATATC CATTCATTCC AATATAATTC TCCACAAAAT TACTATCATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.002 +strand -110 : -101 TGGTCAATTa AC RSP00468 Mean Expected Number 0.001 +strand -111 : -101 TTGGTCAATTa AC RSP01482 Mean Expected Number 0.001 -strand -101 : -111 tAATTGACCAA AC RSP01733 Mean Expected Number 0.008 +strand -87 : -82 CCGCGT Totally 4 motifs of 4 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G36220 |PROD: the same as GENE |15199559..15200777 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.32 C - 0.21 1 attttataat attaaaaaaa tcatattata taattcctga ttttcaattt 51 tgcatattac gtcgacactt cgtcctccgg gttttccgag cacaagtcct 101 aatcaaACAA Taagaagaca aaaagaaaaa taaaatctga aaaagaacct 151 ttgctctttg ttaaTATAAA AAgccctact ctcgcatcca acgtttcttc 201 ACCTCTAATT CTTCTCACTA AAAATATCAA AAGCTTTCAC ATTACAATAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00263 Mean Expected Number 0.001 +strand -16 : -8 CATCCAACG AC RSP00669 Mean Expected Number 0.001 +strand -42 : -29 TGtTAATATAAAAA Totally 2 motifs of 2 different REs have been found Description of REs found 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: fructose-bisphosphate aldolase, putative |LOCUS: AT2G36460 |PROD: the same as GENE |complement(15303780..15305593) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.25 C - 0.20 1 aattgaatca ttttacctga ggaatattat tgggctacaa tgggccgtag 51 tgaggccgaa gtcacacctt aaatagaacg tggtagaagt tactataata 101 ttagagttac aaaccagtaa tcacggaagt agtaaaaacg gcccatagaa 151 agTATAAACA atccaacggc tgaaaaagct taccttggag aagagtccaa 201 AATATCTTCT GGAAGCTACC ATCACTCTCT CCTATATAAC TCAAAATTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.001 -strand +11 : +3 CAGAAGATA AC RSP00987 Mean Expected Number 0.007 +strand +13 : +22 aAGCTACCAT AC RSP01046 Mean Expected Number 0.002 +strand -42 : -34 CAATCCAAC AC RSP01497 Mean Expected Number 0.003 -strand -31 : -40 GCCGTtGGAT Totally 4 motifs of 4 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: S-adenosylmethionine synthetase, putative |LOCUS: AT2G36880 |PROD: the same as GENE |complement(15486445..15488486) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +514 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.22 C - 0.25 1 tattactctt ctctctcacc aaccacaccc ataccaacga caacggggtt 51 ggtgagatta cattagttgt ctacatctca ccgtccattc attcttcatt 101 aaaagatcaa cggtctaaaa acatgagaat actgtagatc ataaaacacg 151 tgatcagagc tccggcaaca aTATAAACCg aagagatgtg aagcacgaga 201 GAAGAGCGGG CAAAACAAAC AGAGAGCGAG TCACGCGCCG AGTTTTCCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.001 -strand -85 : -93 AGACCGTTG AC RSP00286 Mean Expected Number 0.002 +strand -187 : -177 TCTCACCaACC AC RSP00286 Mean Expected Number 0.001 -strand -144 : -154 TCTCACCaACC AC RSP00350 Mean Expected Number 0.001 +strand -119 : -109 CGTCCATtCAT AC RSP00837 Mean Expected Number 0.006 +strand -97 : -88 AGATCaACGG AC RSP00950 Mean Expected Number 0.004 +strand -186 : -176 CTCACCAACCa AC RSP00950 Mean Expected Number 0.000 -strand -145 : -155 CTCACCAACCC AC RSP00978 Mean Expected Number 0.004 -strand -47 : -56 ATCACGTGTT AC RSP01043 Mean Expected Number 0.000 -strand -144 : -156 TCTCACCAACCCC AC RSP01044 Mean Expected Number 0.001 +strand -187 : -176 TCTCACCAACCa AC RSP01044 Mean Expected Number 0.000 -strand -144 : -155 TCTCACCAACCc AC RSP01083 Mean Expected Number 0.001 +strand -187 : -176 TCTCACCAACCa AC RSP01083 Mean Expected Number 0.000 -strand -144 : -155 TCTCACCAACCC AC RSP01184 Mean Expected Number 0.002 +strand -187 : -176 TCTCACCaACCA AC RSP01454 Mean Expected Number 0.003 -strand -148 : -154 ACCAACC Totally 15 motifs of 11 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 967. Group RE: FP2 /AC: RSP01043//OS: Solanum tuberosum /GENE: St4cl-1/RE: FP2 /TF: unknown 968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PIP2B |LOCUS: AT2G37170 |PROD: |complement(15620481..15621933) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.07 T - 0.27 C - 0.21 1 acacaattct atattcattt cattgaaacg aataataaaa acaaccataa 51 gcctaccaaa aggaaaacat tatcgtaata taatcaatca ataacacgta 101 tACAATtatt aacgtatatt gacaagcaaa attaatgaga gcactcacta 151 tagctatagt ctctctaTAT AAACAacttt cattcgtctc ttcagtcttc 201 ACAAACACAA CATATCCACA ATACAAAACA CAACTTTCAT ATATAACAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 +strand -144 : -138 CAAAAGG AC RSP01015 Mean Expected Number 0.004 -strand -15 : -24 CgAATGAAAG AC RSP01288 Mean Expected Number 0.005 -strand -100 : -107 ATACGTGT AC RSP01702 Mean Expected Number 0.008 +strand -108 : -99 AACACGTATa AC RSP01717 Mean Expected Number 0.000 -strand -98 : -109 GTAtACGTGTTA Totally 5 motifs of 5 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RD28 |LOCUS: AT2G37180 |PROD: |15624791..15626234 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.09 T - 0.22 C - 0.24 1 agttaccact gaccaacttc tttagcaaaa aaaaaaaatt accactaaac 51 caacttatgc attcgttaca aaaaaaaata ccataaaaca aaacatcaat 101 gttgtaagtt gtgacattaa atcaaaagtg tcaaaatcaa cagtagcaca 151 aaccaagagc tcactctaTA TAAAGAacct ttattcttca tctcacaacc 201 ACAAGCCCTA CAACAACCAC AAAGCAAAAC ACTTACTTAG AAAGTCCAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00773 Mean Expected Number 0.006 -strand -77 : -86 TGATTTAATG AC RSP00943 Mean Expected Number 0.009 +strand -13 : -3 TCATcTCACAA AC RSP01136 Mean Expected Number 0.004 -strand -85 : -91 TGTCACA AC RSP01596 Mean Expected Number 0.009 -strand -3 : -13 TTGTGAgATGA Totally 4 motifs of 4 different REs have been found Description of REs found 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: nodulin MtN21 family protein |LOCUS: AT2G37460 |PROD: the same as GENE |complement(15733527..15736176) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.28 C - 0.17 1 ataaggtaaa gaaataagtc ccatgatttc agggtacggt ttggaaagta 51 gcctcaaaat acataacaaa aaggaaaaaa agaaaattta cacgcatatt 101 tatttacact aataagttta cgtagagaga agaatgttca catcacatca 151 catcctttta actttggctc taTATAAAGA gagatagcca agacaatcat 201 AACAACTCAT ATCAATTTTT TAAAAAAAAC TCTCCATATA TCTATTACTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01529 Mean Expected Number 0.000 -strand -149 : -159 GCTACtTTCCA Totally 1 motifs of 1 different REs have been found Description of REs found 1376. Group RE: Box I /AC: RSP01529//OS: Pisum sativum /GENE: PsCHS3/RE: Box I /TF: unknown ||Identical REs AC: RSP01530 RSP01531 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: histone H2B, putative |LOCUS: AT2G37470 |PROD: the same as GENE |15743842..15744446 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.27 C - 0.25 1 cagatccagc ccaataaaag gagcgatgca tcagatattc agatggcaga 51 gatcctaaat aatctcaacc gttctagaga tcctaaataa tctcaaccgt 101 ttatttattt aagccacgtc atcgatcctc gcgaaaaaca aatacccatt 151 tacaagcagt tacatatctg taTATAAACA attatcatca ttcagcatca 201 ACGCGTCTCT CAATTCTCAC ATTCTCAAAA TCACTAAAAT CAAACTCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -80 : -88 TGACGTGGC AC RSP00214 Mean Expected Number 0.004 -strand -80 : -87 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -87 : -80 CCACGTCA AC RSP00232 Mean Expected Number 0.009 +strand -85 : -76 ACGTCATcGA AC RSP00248 Mean Expected Number 0.002 +strand -88 : -79 GCCACGTCAt AC RSP00819 Mean Expected Number 0.002 +strand -88 : -79 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 +strand -88 : -79 GCCACGTCaT AC RSP00857 Mean Expected Number 0.001 -strand -155 : -164 CCATCTGAAt AC RSP00913 Mean Expected Number 0.005 -strand -78 : -87 GATGACgTGG AC RSP00916 Mean Expected Number 0.005 -strand -78 : -87 GATGACGTGg AC RSP00997 Mean Expected Number 0.007 -strand -78 : -87 GATGACGTGg AC RSP01034 Mean Expected Number 0.005 -strand -82 : -88 ACGTGGC AC RSP01065 Mean Expected Number 0.002 -strand -72 : -82 AGGATCGATGA AC RSP01106 Mean Expected Number 0.000 +strand -90 : -80 AaGCCACGTCA AC RSP01275 Mean Expected Number 0.005 +strand -88 : -79 gCCACGTCAT AC RSP01280 Mean Expected Number 0.001 -strand -78 : -88 GATGACGTGGC Totally 16 motifs of 16 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RNA-binding protein, putative |LOCUS: AT2G37510 |PROD: the same as GENE |complement(15750070..15751619) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.37 C - 0.18 1 aatcttatgt aagatttgga tgaagataac aatcttaact tcaaatttgt 51 ttcccttgaa attatacttc aattacatat gtgtatactg tatcatcatc 101 atttctttca tgtttgttaa cctgtggaaa acagaggaaa cgacgacgtt 151 ttgtctgatt TATAAAAGtt aaaacccttt gataagccct aaagattgcc 201 ATTTCCGATC TCAAATCCTT TTGTCCCACT TGCTATAATG GCGTTCGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 -strand -14 : -20 GCTTATC AC RSP00163 Mean Expected Number 0.004 +strand +17 : +27 CCTTTTGTCcC AC RSP00522 Mean Expected Number 0.009 +strand +26 : +32 CCACTTG AC RSP00628 Mean Expected Number 0.009 +strand -173 : -166 AACAATCT Totally 4 motifs of 4 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L36 (RPL36A) |LOCUS: AT2G37600 |PROD: the same as GENE |complement(15781323..15782420) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.38 C - 0.15 1 ttagctatac gttacgtatc atgtcttatt aaacaagata gctttgggcc 51 tgtatcagat acaaatgttt taagtttcaa ttggatcaat atattgggcc 101 attaaattat ttttagcaaa taggcCCAAT tggttaatat gttgtagggt 151 tttgtctttt gtcgtttcat aTATAAAGTt ccattttttc caaaaatcgt 201 TGTGTAGCAG CGGCTGCTTC TCCATTGCAG AGGTATGAGA ATCTGATCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.006 -strand -79 : -89 TATTTGCTaAA AC RSP00454 Mean Expected Number 0.002 +strand -188 : -178 TACGTAtCATG AC RSP01735 Mean Expected Number 0.002 -strand +44 : +36 AGATTCTCA Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AUX1 |LOCUS: AT2G38120 |PROD: amino acid permease, putative (AUX1) |15980071..15984258 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +500 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.28 C - 0.13 1 atgtcaaata gtcacattaa tattcaatgc gaaaacgtaa aaaaaagtaa 51 gatgctaccg ttacctaaac aaaagttaat ggtgtgattt tacagcacct 101 gtttaatatt tttaaaatta cataaaaaaa ccaaagagaa gtaagaaaaa 151 atgaaaaaga gagattggta TATAAAAAgg aggagtaggg ggtgaagccc 201 GAAGCATCTT ATAGTATTTT TAGCTTCATT CCTTCTTTTG CTCTGATCAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: stress-responsive protein, putative |LOCUS: AT2G38230 |PROD: the same as GENE |16018534..16019572 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.27 C - 0.32 1 aagaaacaaa tcttgtggtc aaagtttcca tacgtagctt ctcttctcta 51 cactcacgtc caccacaatc ctcgtgctcc ttcctctaaa cccgtccgat 101 tcacgtactt ttactatctt ttcTCAATcc aacagctcac agtccacaaa 151 caaatttcaa atcgcgtccT ATAAAATccc ctctcctctg ctccacactc 201 TCTCAAAACC CTAGAAAAAA TGGCAGGAAC CGGAGTTGTG GCGGTGTACG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.007 +strand -189 : -180 CTTGTgGTCA AC RSP00383 Mean Expected Number 0.008 +strand -184 : -178 GGTCAAA AC RSP00385 Mean Expected Number 0.009 +strand -47 : -40 ATTTCAAA AC RSP01017 Mean Expected Number 0.005 +strand -199 : -192 AGAAACAA AC RSP01046 Mean Expected Number 0.004 +strand -76 : -68 CAATCCAAC AC RSP01599 Mean Expected Number 0.009 +strand -46 : -39 TTTCAAAT Totally 6 motifs of 6 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AGT3 |LOCUS: AT2G38400 |PROD: alanine--glyoxylate aminotransferase |16090769..16093427 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 atttcaaatt aaaccatgta taattcaatt taggggtaat ttaatacttt 51 agggtagtaa cgataaaata gataattaaa ttgaagttta aggaccatcc 101 tgtaaattca agttcggtac cggaaacacg tcagcATTGA tctaatagat 151 acgagtcctc ctttctcTAT AAATAacgta atctctctcc cgtcttcatt 201 ACCATCGAAA CAGTGTCGTC GTAGTCTCTC TCTCTCTCCG CAAAATATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.008 +strand -172 : -166 TTTAGGG AC RSP00260 Mean Expected Number 0.008 +strand -153 : -147 TTTAGGG AC RSP00864 Mean Expected Number 0.002 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +33 : +25 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +39 : +31 GGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -11 : -19 GGAGAGAGA AC RSP00894 Mean Expected Number 0.009 +strand -96 : -89 AATTCAAG AC RSP00997 Mean Expected Number 0.004 -strand -66 : -75 GCTGACGTGT AC RSP01174 Mean Expected Number 0.001 +strand -17 : -7 tCTCTCCCGTC AC RSP01258 Mean Expected Number 0.003 -strand -68 : -75 TGACGTGT AC RSP01296 Mean Expected Number 0.006 +strand -34 : -26 CTATAAATA Totally 12 motifs of 8 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G38450 |PROD: the same as GENE |16109115..16109993 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.29 C - 0.15 1 tagtcttaat ttctagtggg ctagggaaaa aaataaaaaa attctagtgg 51 gcttaagagc taggcccata agatatttta atattatttt atacaatgag 101 accaaaccaa aaccaaacaa gagATTGAga agaaaaccga ttttttcctt 151 ttatttattt ttatgttTAT AAATTaaaaa tgggaaaatc gattcccgtc 201 AAAACAGGGC TAAGAGGAGC TTCCGCAGCA GTAGCTGGAT TCATCAAATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00646 Mean Expected Number 0.000 +strand -31 : -18 tAAATTAAAAATGG AC RSP00716 Mean Expected Number 0.002 +strand -93 : -85 CAAAACCAA AC RSP00868 Mean Expected Number 0.009 +strand -119 : -108 TATTATtTTATA AC RSP01602 Mean Expected Number 0.006 -strand -71 : -78 TCTCAATC Totally 4 motifs of 4 different REs have been found Description of REs found 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ANNAT4 |LOCUS: AT2G38750 |PROD: annexin 4 (ANN4) |complement(16203343..16205569) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.29 C - 0.25 1 tatgtaaatt ccgtttgcgt aaaacagttg ttaacatatg caattaattg 51 cgtgggcgtt actccttgtt acaacaatgc ccctagcatt tgtcttaaat 101 cttgtATTGA atacctaaaa cacccttctc ttctcccata aaccacaaca 151 ttacccttaa tcatcaTATA AAACgtcttg tccctcttcc atagatttcc 201 ACAGAAACCA AACCAAGAGC CGGAAATCAA AAACAGTAAT AAAAGATCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.006 +strand -187 : -181 TTTGCGT AC RSP00889 Mean Expected Number 0.001 -strand -146 : -152 CCACGCA AC RSP01641 Mean Expected Number 0.004 +strand -25 : -16 TCTTGTCcCT Totally 3 motifs of 3 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: YLS5 |LOCUS: AT2G38860 |PROD: proteaseI (pfpI)-like protein (YLS5) |complement(16240522..16242313) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.29 C - 0.16 1 ccacatataa tagttagcag aaactacata ccattcaaag ttatagctag 51 tttatatatt tgtaataagg acttttcacc agttggactt tgaagccacc 101 aaaaaaagta ggtgaaagtg agttggtggg gggattcaaa agttccacat 151 gacaaataga taatcagTAT AAATAagatt agttcttctt atattgtctt 201 ATTCAATGCA CACAAACATT TACCCAAAAT GGCATCGGCG GTTCAGAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00357 Mean Expected Number 0.002 -strand -76 : -83 CAACTCAC AC RSP00440 Mean Expected Number 0.001 +strand -132 : -124 GGACTTTTC AC RSP00601 Mean Expected Number 0.000 -strand -70 : -78 CCCCACCAA AC RSP01209 Mean Expected Number 0.001 -strand -93 : -102 CTTTTTTTGG AC RSP01214 Mean Expected Number 0.003 -strand +32 : +23 CCATTTTGGG Totally 5 motifs of 5 different REs have been found Description of REs found 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protease inhibitor, putative |LOCUS: AT2G38870 |PROD: the same as GENE |complement(16243459..16244358) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +230 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.35 C - 0.17 1 ggtcattttt gtcggctaag tgccaaattt ggcagaagcg tttttttgca 51 tgcaaacaga attcagtcga cgctagaaat atttttcacc ttcgtttgtt 101 tttcaaattt cgacattatc ttagccttag aaaccttatc ttgttctcga 151 taaggtttga acatcgtgaT ATAAATAtgt acatttcaaa gctttataaa 201 ACAAAATCAG AAGTGTCAAA GCTTTTACCA AACAAATTAA TAATGTCAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.009 -strand -185 : -190 GCCGAC AC RSP00918 Mean Expected Number 0.005 -strand +50 : +41 GTTGACATTA AC RSP01600 Mean Expected Number 0.009 +strand -17 : -10 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: serine protease inhibitor |LOCUS: AT2G38900 |PROD: the same as GENE |16250312..16251132 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.24 C - 0.20 1 ctactaaata atagtaaagt tgaagaaccg ctccgtttta caccatgcac 51 gtgttatcta acaaagaaaa tatggtacac ctaatggcta atgcaaagga 101 caacACAATg aaactaactt gactctgtgt tatacaaacc catagacatc 151 tgcatacatc ctagtatttg TATAAATTgg actcaaattc ctgaggacaa 201 TCATAGCAAA CAATCACATC ATCGCAATAT ACATAAACAA AAGAGGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.007 +strand -35 : -24 ATTTgTATAAAT AC RSP00157 Mean Expected Number 0.007 -strand -24 : -35 ATTTATAcAAAT AC RSP00524 Mean Expected Number 0.005 -strand -147 : -153 ACACGTG AC RSP00915 Mean Expected Number 0.005 -strand +23 : +14 GATGATGTGA AC RSP00916 Mean Expected Number 0.003 -strand +23 : +14 GATGATGTGA AC RSP00974 Mean Expected Number 0.001 -strand -146 : -155 AACACGTGCA Totally 6 motifs of 5 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: nodulin MtN3 family protein |LOCUS: AT2G39060 |PROD: the same as GENE |complement(16313766..16315328) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.18 T - 0.27 C - 0.12 1 tgcagaaaaa aataaaatcc aggaaaactt gaaccaaact tttgtttttt 51 tgtttaaaaa gagaaagaaa gaaaattaaa taggggacaa aaatgaaaat 101 gcaagaatga ctcacttttt ttttggttta agggtttata agaatgactc 151 actttttctc caagaccaaT ATAAAATgga ggtttgcatg aagaaactat 201 AATTCAAAGC AGTCAACTAG CAAGAGAAAG AGAGAAAAGT GAAGATGTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.008 -strand -11 : -17 CATGCAA AC RSP00190 Mean Expected Number 0.008 -strand -50 : -56 TGAGTCA AC RSP00190 Mean Expected Number 0.008 -strand -87 : -93 TGAGTCA AC RSP00430 Mean Expected Number 0.000 -strand -49 : -57 GTGAGTCAT AC RSP00430 Mean Expected Number 0.000 -strand -86 : -94 GTGAGTCAT AC RSP00444 Mean Expected Number 0.002 +strand -140 : -127 gAGAAAGAAAGAAA AC RSP00445 Mean Expected Number 0.002 -strand -80 : -89 AAAAAAGtGA AC RSP00871 Mean Expected Number 0.002 -strand -48 : -57 aGTGAGTCAT AC RSP00871 Mean Expected Number 0.002 -strand -85 : -94 aGTGAGTCAT AC RSP00985 Mean Expected Number 0.007 -strand -161 : -170 AGTTtGGTTC AC RSP01104 Mean Expected Number 0.002 -strand -16 : -23 AAACCTCC Totally 11 motifs of 8 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 410. Group TF: BLZ1 /AC: RSP00430//OS: Hordeum vulgare /GENE: Hor2 gene/RE: GSN; hor1-box; /TF: BLZ1 ||Identical REs AC: RSP00883 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: jacalin lectin family protein |LOCUS: AT2G39310 |PROD: the same as GENE |complement(16421152..16423892) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +491 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.34 C - 0.20 1 aaatatctct gcatctagaa agttgtatgc tattattata tattgcactc 51 gtaatggact ctaattattt gttgcatttg tgagggagtc tctcgtgtca 101 cacgagttga ttattaaaat gattaattaa agACAATcaa gaagaccttg 151 tatgccaaag attgtcAATA AATAcacaca attcaatacc cataagcttc 201 ATCTCCTTCC ATCATTCAGA GCTCAATAAT TAACTGGTTA TCTCTCTCCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand -128 : -118 TGcATTTGTGA AC RSP00613 Mean Expected Number 0.008 +strand -65 : -58 ATCAAGAA AC RSP00681 Mean Expected Number 0.005 -strand -72 : -80 TAATTAATC AC RSP00865 Mean Expected Number 0.001 -strand +49 : +41 GGAGAGAGA AC RSP00979 Mean Expected Number 0.005 -strand -171 : -180 gCATACAACT Totally 5 motifs of 5 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: jacalin lectin family protein |LOCUS: AT2G39330 |PROD: the same as GENE |complement(16426674..16428928) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +277 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.35 C - 0.15 1 aaattacaaa ttatggggat tggtttggcc ttgtaaaatg ttttccttct 51 catattcttt ttgaaggaaa agtaaaggga acagaaaaag gtcaatcatg 101 atttagttac aacttacaag tataactaaa ttATTGGaat caacaaaaac 151 gtgttccaaa ttgtatcAAT AAATAgacat agttgatagt tccttaattt 201 CATTCTGAAT AAGATCAAGA ATTTACAGGT TCTCTCTTCT CTCTCTCTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.002 -strand -176 : -185 AACCAATCCC AC RSP00653 Mean Expected Number 0.001 +strand +30 : +40 TTCTCTCTtCT AC RSP00864 Mean Expected Number 0.001 -strand +48 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +46 : +38 AGAGAGAGA AC RSP01640 Mean Expected Number 0.005 -strand -19 : -28 CTATGTCTaT AC RSP01702 Mean Expected Number 0.008 -strand -46 : -55 AACACGTtTT Totally 6 motifs of 5 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATEXPA4 |LOCUS: AT2G39700 |PROD: expansin, putative (EXP4) |complement(16550910..16552662) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.32 C - 0.27 1 attagattac attaaaaaaa tgacaaaacg gttacaaacc tacctccacc 51 ttacgtagaa atagtaatct tattttaaaa gttttaactt tgacaaaagg 101 aaattaaaat ttagCCAATt atctctcgat ctctctctct cactctaact 151 ttggagtttc cttccctcCA TAAATAccga acctcactcc ttcttcctcc 201 ACCATCCTCA TCTCTCAATC AACAAACCTA ACTCTTTCTC TATACAAGAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.005 +strand -107 : -101 CAAAAGG AC RSP00395 Mean Expected Number 0.006 +strand -150 : -141 TTACGTAGAa AC RSP00405 Mean Expected Number 0.000 +strand -51 : -44 TTTGGAGT AC RSP00428 Mean Expected Number 0.001 +strand -178 : -167 AcAAAACGGTTA AC RSP00864 Mean Expected Number 0.004 -strand -61 : -69 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -63 : -71 AGAGAGAGA AC RSP01094 Mean Expected Number 0.006 -strand -80 : -91 TAATTGGcTAAA AC RSP01598 Mean Expected Number 0.007 -strand -176 : -183 TGTCATTT Totally 8 motifs of 7 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G39705 |PROD: the same as GENE |16563934..16564655 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +182 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.06 T - 0.34 C - 0.21 1 ataccgactg ccacaactct ctgcatcctc ttctaatttt atatttatca 51 caaaatccga caaaagtata caaaaatcaa taaatattta acctataata 101 tttatctttg catattataa taattattat tttaaaatcg aaatggttct 151 acaataaaaa tatccatTAT AAATAcagaa ccctaactct cttttcagtt 201 GCTGACTCAA ATCTCCAAAC TCCTAGAAAA TCTCCAAATT CCCAAGTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00403 Mean Expected Number 0.009 +strand -5 : +1 CAGTTG AC RSP01304 Mean Expected Number 0.007 +strand -24 : -15 aGAACCCTAA AC RSP01621 Mean Expected Number 0.005 -strand -131 : -140 TAtACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 385. Group TF: Myb /AC: RSP00403//OS: Nicotiana tabacum /GENE: RNP2/RE: Mybb /TF: Myb 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CYT1 |LOCUS: AT2G39770 |PROD: GDP-mannose pyrophosphorylase (GMP1) |16595783..16598063 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +696 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.35 C - 0.19 1 ttggtgtata agcgtctacg tgacctttaa ttaatttact tcccccaaaa 51 aagtcaacat tcaacatgtg aataaaaatc aatattggtt tctaagtaag 101 taagtaccat attattaaat tatttatttt ggtaaatacg cacTCAATtt 151 ttctctcaac ggtgtaTATA AACAaaagga gtctcctttg gaaaaaactt 201 GCCTATCATT TTGCCAACGA ACGTTCTTTC TTCTTAATCA CAGCTCAGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 +strand -28 : -22 CAAAAGG AC RSP00068 Mean Expected Number 0.005 -strand -177 : -186 GtCACGTAGA AC RSP00115 Mean Expected Number 0.009 +strand -129 : -119 ATAaAAATCAA AC RSP00170 Mean Expected Number 0.000 +strand -87 : -72 aTTAAATTATTTATTT AC RSP00233 Mean Expected Number 0.007 +strand -186 : -177 TCTACGTgAC AC RSP01209 Mean Expected Number 0.006 -strand -148 : -157 CTTTTTTGGG Totally 6 motifs of 6 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 164. Group RE: Element 2 /AC: RSP00170//OS: Glycine max /GENE: lbc3/RE: Element 2 /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G40000 |PROD: the same as GENE |complement(16707588..16709106) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.30 C - 0.27 1 ataaagccaa aaaacgaaaa aaagattatc ctgaaattaa tccacagtac 51 tggttttttt tttttttaaa aaggagaccg cgtttctacg ctgactttca 101 aatcagtcgc gtcggtatta ttccacacgc cttttttctc gtccccatcc 151 tctatccaca tttctctcTA TATATActct cctcgtatcc taaactcatc 201 CTCAAATTCA AAATTTAACA CACAAACACA AACACACACA CCAAAAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.003 +strand -71 : -61 CCTTTTtTCTC AC RSP00255 Mean Expected Number 0.004 +strand -7 : +2 ACTCATCCT AC RSP00422 Mean Expected Number 0.004 -strand -85 : -90 ACCGAC AC RSP00940 Mean Expected Number 0.002 +strand -117 : -108 TTCTACGcTG AC RSP01237 Mean Expected Number 0.002 +strand -35 : -26 CTCTATATAT Totally 5 motifs of 5 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ELF4 |LOCUS: AT2G40080 |PROD: expressed protein |complement(16741372..16741990) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.29 C - 0.21 1 tactttttat tcctctaccc aatcacttca cagcttcact cacgcgcgtg 51 ttctttgata tcagatagat acgtctacgt gagatacacg ctcttgttaa 101 tcaagtggtg atgaaacaga acttactcgc ctcggtgtcc gattctactc 151 agaagatatt tacTATAAAT Atctgatttc tctcgacttt gacgaaaatc 201 AAAAAGAGAG AAAAACACAA TTAAAAATTA TTATGAAGAG GAACGGCGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.002 +strand -51 : -43 CAGAAGATA AC RSP00474 Mean Expected Number 0.000 +strand -99 : -88 CAAGTGGTGaTG AC RSP00522 Mean Expected Number 0.008 -strand -93 : -99 CCACTTG AC RSP00523 Mean Expected Number 0.004 -strand -150 : -156 ACACGCG AC RSP01167 Mean Expected Number 0.005 +strand -35 : -27 TAAATATCT AC RSP01167 Mean Expected Number 0.004 -strand -39 : -47 TAAATATCT AC RSP01296 Mean Expected Number 0.005 +strand -38 : -30 CTATAAATA AC RSP01776 Mean Expected Number 0.009 +strand +17 : +27 ACAATTAAAaA Totally 8 motifs of 7 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 452. Group TF: Alfin1 /AC: RSP00474//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS4 /TF: Alfin1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: Bet v I allergen family protein |LOCUS: AT2G40330 |PROD: the same as GENE |complement(16851942..16853012) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.27 C - 0.24 1 ccagtccgta gaatttcatg ggaaaccggg ccggtccttg atataaagaa 51 agagagagac gtttcttaac tgaagcagta cacaaactcc aaacaaatcc 101 caagtggaca accgaagaac ccacacaaac taactctctt tcctaatcca 151 catacttgca tttttataTA TAAACActct gtccttatat agttctgtat 201 ATTACATGTA AATATCTCTC ATTAATACAA CCTCACGAAG AAAACCATTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.005 -strand -94 : -100 CCACTTG AC RSP00597 Mean Expected Number 0.005 -strand -67 : -78 GTTAgTTTGTGT AC RSP00683 Mean Expected Number 0.002 +strand -102 : -93 cCCAAGTGGA AC RSP00861 Mean Expected Number 0.001 +strand -154 : -146 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 +strand -150 : -142 AGAGAGAGA AC RSP01167 Mean Expected Number 0.005 +strand +9 : +17 TAAATATCT Totally 6 motifs of 6 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AP2 domain-containing transcription factor |LOCUS: AT2G40340 |PROD: the same as GENE |complement(16855516..16857565) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.25 C - 0.22 1 gaaattacaa agaagctttg agggtaaaat agtcaaaaag cataatcaga 51 aataacttag gcccaaagca aaaaggaaag gactctggat ccagccgcaa 101 atcagaatct ggtaagttcg aacgccacgt catcacctaa atatctgaaa 151 tatctaatta agacttgtcT ATATATAaag gcttctcctt tcacaatccc 201 AAACCTTTCT CTTCTCTGCT AACGAGAAAA CAAAAGCTAT CGTCTTTGCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -69 : -77 TGACGTGGC AC RSP00214 Mean Expected Number 0.003 -strand -69 : -76 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -76 : -69 CCACGTCA AC RSP00248 Mean Expected Number 0.003 +strand -77 : -68 GCCACGTCAt AC RSP00819 Mean Expected Number 0.002 +strand -77 : -68 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 +strand -77 : -68 GCCACGTCaT AC RSP00847 Mean Expected Number 0.007 +strand -76 : -67 CCACgTCATC AC RSP00913 Mean Expected Number 0.003 -strand -67 : -76 GATGACGTGG AC RSP00915 Mean Expected Number 0.006 -strand -67 : -76 GATGACGTGG AC RSP00916 Mean Expected Number 0.003 -strand -67 : -76 GATGACGTGG AC RSP00943 Mean Expected Number 0.006 +strand -15 : -5 TCcTTTCACAA AC RSP00997 Mean Expected Number 0.005 -strand -67 : -76 GATGACGTGG AC RSP01034 Mean Expected Number 0.006 -strand -71 : -77 ACGTGGC AC RSP01106 Mean Expected Number 0.000 +strand -79 : -69 ACGCCACGTCA AC RSP01167 Mean Expected Number 0.004 +strand -63 : -55 TAAATATCT AC RSP01237 Mean Expected Number 0.007 +strand -34 : -25 gTCTATATAT AC RSP01237 Mean Expected Number 0.010 -strand -21 : -30 CTtTATATAT AC RSP01275 Mean Expected Number 0.004 +strand -77 : -68 gCCACGTCAT AC RSP01280 Mean Expected Number 0.001 -strand -67 : -77 GaTGACGTGGC AC RSP01596 Mean Expected Number 0.006 -strand -5 : -15 TTGTGAAAgGA Totally 20 motifs of 19 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATEXPA8 |LOCUS: AT2G40610 |PROD: expansin, putative (EXP8) |complement(16955941..16957635) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.27 C - 0.22 1 taacgagaaa taaaaggcac aattctctcg caaattggtc aaaaatacga 51 ataaataaat caactaaata cccaaaaagg tgaaagaatt agagacaccC 101 CAATgtactt catatagtaa acatttaaat atgattatcg cttggcacaa 151 ttattcactc gagtaccccT ATATATAccc attccttcca tttgtagatt 201 CCATATTATT CACGATTCTC ATCAAATCAT CTCCGATACT CACAACCGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01015 Mean Expected Number 0.005 -strand -7 : -16 CAAATGgAAG AC RSP01033 Mean Expected Number 0.007 -strand -121 : -130 CCTTTTTGGG AC RSP01214 Mean Expected Number 0.004 -strand -121 : -130 CCTTTTTGGG Totally 3 motifs of 3 different REs have been found Description of REs found 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: calmodulin-like calcium-binding protein |LOCUS: AT2G41090 |PROD: the same as GENE |17142862..17143930 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.18 T - 0.20 C - 0.15 1 aaataaatgt ttctttcaaa taaatggaaa tacaaaaaag aaaagaaaaa 51 aaagacagca tttaatgatg ataacgattt ggaagaagga accaaccaat 101 tagagtaaca aaccaaggag gcgactcaca tgaaagcaaa agctgacatg 151 gcagtgaatt cagtttTATA AAAAaggctt caaggccgag agttcgtagt 201 ACAAACTCTT CTCTCAGTCA TCACAGAAAA TAAAAAACAA TGGCGAATAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.007 -strand +15 : +10 GAGAGA AC RSP00248 Mean Expected Number 0.001 -strand -49 : -58 GCCAtGTCAG AC RSP00534 Mean Expected Number 0.002 +strand -139 : -127 tTAATGATGATAA AC RSP00913 Mean Expected Number 0.003 +strand -59 : -50 GcTGACATGG AC RSP01016 Mean Expected Number 0.001 -strand -187 : -194 AGAAACAT AC RSP01599 Mean Expected Number 0.006 +strand -187 : -180 TTTCAAAT Totally 6 motifs of 6 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G41660 |PROD: the same as GENE |17374900..17376267 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.34 C - 0.21 1 gcgtattggt aacaagtaat atactgtact aaattactaa tacttatatt 51 gttaaactaa ctctatgttt tctagctgat aatgttatcc ttaataaact 101 aACAATatat gtttaatttt atgggggcct cccaaatgat aagcaataaa 151 tattgatgca aaatgtgTAT AAATAcacac acaaatcggc cacacctctt 201 GAACACTCAT CATCACTTTG GTCGGCCGCT TTCTTCCTTC CTTCCTCCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 -strand -57 : -63 GCTTATC AC RSP00359 Mean Expected Number 0.007 -strand +26 : +21 GCCGAC Totally 2 motifs of 2 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G42530 |PROD: the same as GENE |complement(17716114..17717023) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.36 C - 0.20 1 ttgatggccg acctcttttt tcttttggta accatagaaa tggttacacg 51 taactagtac gaaccaacga aaactcttct tattcgatag ttaaagataa 101 taGCAATgcg caaaaatatc tagcactcac acgtgtagtt ttggattctc 151 attggtcgag agatcTATAA AACgatacta ttggaggtta gatttttctc 201 ATCTCACTTT CTCCATCTTA AAACTCTTTC TTGTATTTAT TTTCCTCCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.006 -strand -7 : -16 AAtCTAACCT AC RSP00524 Mean Expected Number 0.007 +strand -72 : -66 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -65 : -71 ACACGTG AC RSP00888 Mean Expected Number 0.006 -strand -4 : -12 AAAAATCTA AC RSP01256 Mean Expected Number 0.002 +strand -72 : -65 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -65 : -72 ACACGTGT AC RSP01261 Mean Expected Number 0.004 -strand -148 : -155 TTACGTGT AC RSP01469 Mean Expected Number 0.010 +strand -74 : -65 TCACAcGTGT Totally 8 motifs of 6 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PDF1 |LOCUS: AT2G42840 |PROD: protodermal factor 1 (PDF1) |complement(17833078..17834560) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.35 C - 0.25 1 ttttaattta ctttgcagaa ttccaagttt tattgcaatc accaggggta 51 ttaaatggga tagtgtaaat gcacctgcaa cacatcaact aaccacacac 101 tcctccacct gtttgtattt acttcaaaaa cttaattcaa aaatcccttt 151 gcttctttcc ttccctctat tTATAAACCc tagtatccgg tttttattct 201 ACCACACAAT ACCATTTGCA ACAAACTTCT CTCTGAATCT CAGTGAATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.006 +strand -135 : -128 TAAATGCA Totally 1 motifs of 1 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G42870 |PROD: the same as GENE |complement(17843493..17844327) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.29 C - 0.25 1 gttcataacc gaacctttca ctaatgtaag caaacaatgt aacataaagc 51 atagcaaacc aaatcaaacc gatagagtat tgtctctaaa ctcgcaacaa 101 accaaaataa aatcaggttg aaccgaccac atttcaacat ttttgtctac 151 taaatccatc atcactcaTA TATATAtata taacacacac agttacacat 201 ATCCACATTC CTTACTTGTT CATTATTCTC TCAGACTCAT CATTCATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01641 Mean Expected Number 0.003 +strand -123 : -114 TaTTGTCTCT Totally 1 motifs of 1 different REs have been found Description of REs found 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: MSS3 |LOCUS: AT2G43290 |PROD: calmodulin-like protein (MSS3) |complement(17998129..17999124) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.37 C - 0.19 1 ctctataaaa tcgttgtttt cttctttgta acgttccatt ttaatttact 51 ttctccaaaa agtaaaggat taaaaattag attcaacggt tgtataggcg 101 tgaaaaagaa aaaataattt ccggaaaaat atactattta ataattataa 151 taaattctct ctctctcctc TATAAAGAca aacaatctcc aagtttctct 201 GTATCAACAA AGCTCTGTTT CAAGCTCTCT GTTTCTCAGA TCTTCTCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.008 +strand -114 : -109 CGGTTG AC RSP00653 Mean Expected Number 0.005 +strand -42 : -32 cTCTCTCTCCT AC RSP00864 Mean Expected Number 0.002 -strand -35 : -43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -37 : -45 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -33 : -41 GGAGAGAGA AC RSP01054 Mean Expected Number 0.002 -strand -166 : -176 AACGTTACAAa Totally 6 motifs of 5 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATTI2 |LOCUS: AT2G43520 |PROD: trypsin inhibitor, putative |18075638..18076219 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.27 C - 0.18 1 atttatttta ccaccgtgct attatatcag ggatataaag aggcaagtgg 51 ttacttttct tatcaatact gatctcaact cgtgacccgt ggttgtcatg 101 ataatttcta gacccaacga taaagataaa atagtagcat cgcaccacaa 151 caagtgttga gcatgagtcT ATATATAtac acatacgtta actccaaagt 201 GAAACAAAGA GATTAGAAAC TACGGAGAGA AAGAGAGAAG ATATATAGCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.006 +strand -22 : -13 aCACATACGT AC RSP00405 Mean Expected Number 0.007 -strand -3 : -10 TTTGGAGT AC RSP00522 Mean Expected Number 0.010 -strand -151 : -157 CCACTTG AC RSP00861 Mean Expected Number 0.004 +strand +28 : +36 AGAAAGAGA AC RSP01237 Mean Expected Number 0.007 +strand -34 : -25 gTCTATATAT AC RSP01237 Mean Expected Number 0.007 +strand -32 : -23 CTaTATATAT Totally 6 motifs of 5 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: trypsin inhibitor, putative |LOCUS: AT2G43550 |PROD: the same as GENE |18080311..18080982 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.32 C - 0.18 1 tgtttaatcc aagataaaag acagaactag tggagcttaa aaaagatcac 51 gtgaaaaacg tctttaccta caaagcaata taatccagat ttgcccaatc 101 tagtagggac tgttcgtgcc tccgatattt gtagtttcct ttttttttgg 151 ctccgaatat ttatttgaTA TTAATAagat tttacaaaag aagctcaatc 201 AATCATTTCA TATCACTTTA AAAGCAGCAA TGTCCGAATA CATCTCCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00155 Mean Expected Number 0.000 -strand +6 : -7 AtGATTGATTGAG AC RSP00234 Mean Expected Number 0.003 -strand +25 : +16 GCTTTTAAAG AC RSP01210 Mean Expected Number 0.001 -strand -156 : -165 CTTTTTTAAG AC RSP01638 Mean Expected Number 0.002 +strand -133 : -123 CTACAAAGCAA Totally 4 motifs of 4 different REs have been found Description of REs found 150. Group RE: 13 bp CytRE /AC: RSP00155//OS: Cucumis sativus /GENE: hpr-A/RE: 13 bp CytRE /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G44060 |PROD: the same as GENE |18233395..18235226 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +603 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.35 C - 0.18 1 tccgaatttt gggggtcttt ctgtactaat caaaaatgtg atcttctttg 51 ttgtaatatc ttgaaattga ggtgtcgaaa tggatgtcaa ttttaaaagC 101 CAATaaggat cttacacgac gaaaattttg tcggcgagcg aagattacgc 151 gtcacattga taatagttaa TATAAAGTtc aacggatcaa ccaattccac 201 AATCTATAAT CATTTTGTGA CTCTTGGAGC ACTCTCTTCT CTTTGTCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.002 +strand -12 : -3 AACCAATtCC AC RSP01640 Mean Expected Number 0.007 +strand +41 : +50 CTtTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: senescence-associated protein-related |LOCUS: AT2G44670 |PROD: the same as GENE |18432255..18433135 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.30 C - 0.22 1 aataaaatat aataaaagta atgaattatt gaactttaac gtatagatct 51 ttcgagatga agattcggtc acgatgaacg gtgaggatgt attgtagagt 101 actgtaacta aagtggtacg tgacacaggt gatcagctca agtcaagcag 151 aaagtcctaa agccggcttT ATAAATGaac accaaatcaa cctccttctt 201 CCTCCTCCTC CTCTCGCTTC TTCTTCTTCC TCTCGAATCT GCTTTTCGCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand -192 : -184 ATAATAAAA AC RSP00072 Mean Expected Number 0.008 +strand -85 : -79 GTACGTG AC RSP00868 Mean Expected Number 0.004 -strand -187 : -198 TATTATATTtTA AC RSP01469 Mean Expected Number 0.009 -strand -69 : -78 TCACcTGTGT AC RSP01687 Mean Expected Number 0.010 +strand -37 : -31 CGGCTTT Totally 5 motifs of 5 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G44770 |PROD: the same as GENE |18464397..18467458 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +495 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.30 C - 0.24 1 cgtttgactt aagtgccaaa ttaattaacc aatgcttaat gacctaacca 51 aagtcacttt ttattttagt ccggtatgac ttgtgacggc gacgctgaaa 101 acgATTGAag tacacgcgcg gggtcctcca gcctaattgc cacctgtaca 151 ccagccctgt ccgtcgtaac TATAAAAAtc tcattttcct tttttatttt 201 ATTTCCAAAC CTCCAAACAA TTAAAGAAAC GGCAAAAATT TATGCTGAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.007 +strand -89 : -83 ACACGCG AC RSP01104 Mean Expected Number 0.007 +strand +7 : +14 AAACCTCC AC RSP01776 Mean Expected Number 0.006 +strand +17 : +27 ACAATTAAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AP2 domain-containing transcription factor TINY |LOCUS: AT2G44940 |PROD: the same as GENE |18544332..18545488 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.32 C - 0.20 1 tcacatggaa caaaactggt tcgctgaaac tgtgaatctc aataatatct 51 tttttgttct atggacccca ttccatactg cctccttcgt tttattataa 101 agaaaaaaca ttatattttt ttccatataa tatgaaaaag ccaaagaaaa 151 aaaaaagatt gtggaggaaT ATTAATAcag cccacttcac atctattttt 201 GTGCAACCAT CTCTCTAAAG CTTCTTCTCT CATAACAATG GCAAGACAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.005 +strand -176 : -166 TGAAAcTGTGA Totally 1 motifs of 1 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: DHDPS2 |LOCUS: AT2G45440 |PROD: dihydrodipicolinate synthase 2 (DHDPS2) |18737914..18740089 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +454 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.18 1 cggaatgttt ttgttaaatt tgggcctata atgggcttta ctttaaagac 51 aattaaacac aattctgacg cgttgacaaa aacaaatcag atacaacctt 101 tttttttttg accgcaaaga aaaaaACAAT tatacaaatt acaaagcagt 151 cacgatggac cgttTATAAA TAcgaacgtg ccttgcataa tctcttactt 201 ACGAGAAGAT TAATATCCAA TGGAGCCCTC CTTAATCATA TGATTAAATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 -strand -38 : -45 ACGGTCCA AC RSP01068 Mean Expected Number 0.008 +strand -137 : -129 TCTGACGCG Totally 2 motifs of 2 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: B5 #1 |LOCUS: AT2G46650 |PROD: cytochrome b5, putative |19158723..19159663 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.31 C - 0.21 1 aaagaatagt attaaacttc aacaaaaaca actatgtata ttaactggtc 51 agatatacat tgctttgttc ccttacatct tcaaagagct aagattaaac 101 tatttacccc aaataagact gtaatttcat caaaatctag taataataat 151 attcaacagc ttacaaTATA AACAtaacgc gtgtggtctc cataagctac 201 GCACTGTCTT TTCATCGGTT CGTAGAAACT AGAAACTCTT CCCCTCACGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.003 -strand -132 : -141 AaCAAAGCAA AC RSP00523 Mean Expected Number 0.002 -strand -17 : -23 ACACGCG AC RSP00559 Mean Expected Number 0.003 +strand -81 : -71 TGTAATTTCAt Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pectinesterase family protein |LOCUS: AT2G47030 |PROD: the same as GENE |complement(19331303..19333467) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.29 C - 0.26 1 aactgcaaat ttacgttcgg catccttttc taagttcgac gtcacgagct 51 ccagcgaaag ttaaataaag ctttttgacc aaatattctc agccattcgt 101 tgacccacaT CAATccctct ccatgcaaaa tccatgcaag ttactaattt 151 tagaattcaa aaagcttcta TATAAACCtc cagaatccat cacaatagat 201 ACTGGCCTAA GTCATTCAAC AATTTGGCTT TAATCTAATA AAGCCTCTCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.003 +strand -60 : -45 TTACTAATTTTAGAAt AC RSP00085 Mean Expected Number 0.003 -strand -45 : -60 aTTCTAAAATTAGTAA AC RSP01210 Mean Expected Number 0.008 +strand -176 : -167 CTTTTCTAAG AC RSP01741 Mean Expected Number 0.000 +strand -129 : -117 TTtTTGACCAAAT Totally 4 motifs of 3 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G47050 |PROD: the same as GENE |complement(19338755..19339716) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.31 C - 0.21 1 gtcgttgtta atttgctcat tttatatttt gaaacaaaat taggattagt 51 gactcggtac ccacagataa aaacgccaca attcactctt tatcatccat 101 tcatttttga aaatagtcaa aaccaaaaac aaaaaacatc caaatttaga 151 aaatccaTAT AAATCtttta tatatacgta acatttctct tcctgtttct 201 AATCCATTCC TTTCCAATCC ACGTCCAAAA AACAAAACCA AAAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00454 Mean Expected Number 0.002 +strand -26 : -16 TACGTAACATt AC RSP00716 Mean Expected Number 0.010 +strand -83 : -75 CAAAACCAA AC RSP00716 Mean Expected Number 0.010 +strand +33 : +41 CAAAACCAA AC RSP00995 Mean Expected Number 0.008 +strand -145 : -140 GGTACC AC RSP00995 Mean Expected Number 0.008 -strand -140 : -145 GGTACC AC RSP01734 Mean Expected Number 0.006 +strand +18 : +24 TCCACGT AC RSP01745 Mean Expected Number 0.000 -strand -78 : -90 GTTTTGACTATTt Totally 7 motifs of 5 different REs have been found Description of REs found 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 916. Group RE: CuRE /AC: RSP00995//OS: Chlamydomonas reinhardtii /GENE: Cpx1/RE: CuRE /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 1552. Group TF: WRKY11 /AC: RSP01745//OS: Arabidopsis thaliana /GENE: At4CL4 (At3g21230)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G47270 |PROD: the same as GENE |complement(19418630..19419221) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.34 C - 0.20 1 tcgagttgta ttttgatgac atgtcctctg atttaagcta aaccctaatt 51 atccatcaaa aacaacattt aaaacaccct tgtggacact tgtcaaattc 101 tcatCCAATt cttttgagag ataaaaggag aaccttctca gaagctgtaa 151 tctccatttt aagcTATATA TAaaggtcac tgacctctat gtatgtctat 201 ATAAACTAAG GGCGTCTCAT ACTCTCATAT ATATTTGCAT CTAATCTTGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 +strand -116 : -107 GaCACTTGTC AC RSP00163 Mean Expected Number 0.001 -strand -73 : -83 CCTTTTaTCTC AC RSP00279 Mean Expected Number 0.002 -strand -153 : -161 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -161 : -153 AAACCCTAA AC RSP00460 Mean Expected Number 0.005 -strand -176 : -185 GACATGTCAT AC RSP00913 Mean Expected Number 0.001 +strand -186 : -177 GATGACATGT AC RSP00997 Mean Expected Number 0.001 +strand -186 : -177 GATGACATGT AC RSP01013 Mean Expected Number 0.009 -strand -41 : -50 aAAATGGAGA AC RSP01205 Mean Expected Number 0.008 +strand -47 : -38 CCATTTTAAG AC RSP01237 Mean Expected Number 0.010 -strand -26 : -35 CTtTATATAT AC RSP01303 Mean Expected Number 0.006 +strand -162 : -153 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -162 : -153 TaAACCCTAA Totally 12 motifs of 12 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pectinesterase family protein |LOCUS: AT2G47550 |PROD: the same as GENE |19516050..19519205 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.33 C - 0.17 1 atttatctaa tttttggtga gagacagatc tatgcgtgtg aatattatca 51 caatatggta tatatgttga attttttgac accgccacaa ttatatatgt 101 agtatgtaca cacacattat cATTGActtg aatttgtatg tatattcaaa 151 ttcaacgttc tcaaaacccT ATATATAtaa tccaaaacat ttagcaaaat 201 ATCTCCAAAC CAAAACACAA TTAAGCTAAA AAAAAAACCA AAGGATGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.006 -strand -180 : -185 CTCACC AC RSP00894 Mean Expected Number 0.008 -strand -67 : -74 AATTCAAG Totally 2 motifs of 2 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L7A (RPL7aA) |LOCUS: AT2G47610 |PROD: the same as GENE |19536860..19538725 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.33 C - 0.17 1 atgttaaacc ggttttttct cattttttcc gccatgttaa ccaccggttt 51 aaaaagaccg taacacattg aaagattaat aagggtatat ttgtaattac 101 ggtttgctgG CAATttttaa ttattatttt aattagagaa aatagagaag 151 ccctatcaat gtacatggta tataTATAAA AGgcaaaacc ctagaaaacg 201 ATACTCTTCG ACTCAGCCGT CCTTTCGCAG AAACCATTTG GAGTTGGAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.005 +strand +37 : +44 TTTGGAGT AC RSP00535 Mean Expected Number 0.002 -strand -17 : -32 GCCT-- +6 bp --TATATA AC RSP01221 Mean Expected Number 0.002 +strand -163 : -156 TAACCACC Totally 3 motifs of 3 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT2G47630 |PROD: the same as GENE |19541573..19544073 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.35 C - 0.14 1 tcattcctta tggatttgtt atgttgactt ttgaggatta tatgtattta 51 gtattaatgt gttttattga cttaatgagg agagtaggtt taggttacat 101 acctcttttg tcgatatgtc tgaCCAATgg atgggtctct ctactaattc 151 acacgcgccc agtgtgacgt caAATAAATA aaattccgaa aacattttct 201 GAGCTTTCCA TAATTTGGAA AAAAGTGAAT TGAAAAAAAG AACAGTGACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.003 +strand -50 : -44 ACACGCG AC RSP00773 Mean Expected Number 0.004 +strand -133 : -124 TGACTTAATG AC RSP01559 Mean Expected Number 0.008 +strand -48 : -43 ACGCGC AC RSP01739 Mean Expected Number 0.001 +strand -137 : -125 TTATTGACTTAAT Totally 4 motifs of 4 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1546. Group TF: WRKY11 /AC: RSP01739//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glutaredoxin family protein |LOCUS: AT2G47880 |PROD: the same as GENE |19612110..19612732 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.30 C - 0.19 1 aacttgtgca gtcaaacaga atataaataa gaagaaaaat tctcaaatag 51 gcatctgata ttttatcttt cctttttgat attttcttag aaataaacta 101 cattttaaat ggtcttttct ttctaattag caagaaaaaa acacactcga 151 aagactcact cccttccTAT AAATAggcga gcaaatgtca agctttttac 201 ATACTCAAAA CAAAACAAAA CATACATCAA AACGCTAAAG TTTAAACCCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00727 Mean Expected Number 0.004 -strand -8 : -14 GCTTGAC AC RSP00734 Mean Expected Number 0.005 +strand +28 : +35 CAAAACGC AC RSP00860 Mean Expected Number 0.002 -strand -77 : -85 AGAAAGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G48090 |PROD: the same as GENE |complement(19676180..19676834) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.35 C - 0.22 1 tggaatcaga atccgatccc tttctaacat cactcttcct tttttgaaaa 51 acttgtaaaa gtttccaact ttcctctttt caacaagttg taatttcttc 101 gcttgttgca tgttgaaaca cgttattctG CAATtaacaa agataaaatc 151 acatagattt tgcatTATAA AAAgctcgtt aatgtcacta tcttctctgc 201 ACAGATCACC TTTAGTACTT CCCAAGGTGA CATCCATGGC AAAGAACTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.004 +strand -147 : -140 TGTAAAAG AC RSP00870 Mean Expected Number 0.006 +strand -147 : -138 TGTAAAAGTt Totally 2 motifs of 2 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G48130 |PROD: the same as GENE |complement(19692138..19693063) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.30 C - 0.18 1 taattagttc tgaaaaagta tactggttca tgtctacgtg gcgttgtata 51 tattgggatg catctagaac atagatatgt ttgataaatt aaagccatat 101 aaaccatgta aagtaggtca tccaaccaga cctgcctctt tgacattttc 151 tggtcagttc ctccTATAAT TAaaccaaag caaaaacacc aaagttgaac 201 AATAATAACT CAAATTATGG GGTATAGAAG AAGCTACGCA ATCACATTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -166 : -159 TACGTGGC AC RSP00051 Mean Expected Number 0.002 -strand -159 : -168 GCCACGTAgA AC RSP00068 Mean Expected Number 0.004 -strand -159 : -168 GcCACGTAGA AC RSP00075 Mean Expected Number 0.001 +strand -167 : -158 cTACGTGGCG AC RSP00280 Mean Expected Number 0.004 -strand -159 : -168 gCCACGTAGA AC RSP00447 Mean Expected Number 0.009 +strand -27 : -18 AcCAAAGCAA AC RSP00467 Mean Expected Number 0.003 +strand -50 : -41 TGGTCAGTTC AC RSP00495 Mean Expected Number 0.008 +strand -94 : -87 TGTAAAGT AC RSP00682 Mean Expected Number 0.001 -strand -159 : -168 GCCACGTaGA AC RSP01034 Mean Expected Number 0.004 +strand -165 : -159 ACGTGGC AC RSP01259 Mean Expected Number 0.001 +strand -167 : -160 CTACGTGG AC RSP01469 Mean Expected Number 0.007 +strand +42 : +51 TCACATtTGT Totally 12 motifs of 12 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G48140 |PROD: the same as GENE |19693479..19694734 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.33 C - 0.13 1 taagttacaa aattactagg agtataccaa actcagctac tttctctttt 51 tatttggttt ctctttgtta attaatgaaa taaaaagaaa aattgtgtgt 101 tgataagagA TTGAgagaaa ggatattagt tggaagttgt tgaactccaa 151 tgcacccatt ttatcataTA TAAAACtgaa taattgtata tctataaagc 201 ATCGTCACCG GAAGATTAAG CAGGCCAATT AAAATGGAAG GCTTAACATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.009 +strand -48 : -43 CACCCA AC RSP01135 Mean Expected Number 0.001 -strand -30 : -42 AtATATGATAAAA AC RSP01602 Mean Expected Number 0.007 -strand -85 : -92 TCTCAATC AC RSP01632 Mean Expected Number 0.002 +strand -9 : +2 CTATAAAGCAT Totally 4 motifs of 4 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 1053. Group RE: I-box-like sequence /AC: RSP01135//OS: Cucumis melo /GENE: Cucumisin/RE: I-box-like sequence /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: myb family transcription factor (MYB57) |LOCUS: AT3G01530 |PROD: the same as GENE |complement(210126..211811) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +653 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.09 T - 0.31 C - 0.20 1 aagctgacac atcatttaga tttccagcca caaaacctca cttactaaat 51 ttggcatatg aattacacca aaccttctca attaattgcc caaaagcaaa 101 cgctattaca actttcattt cattttctct atctatacta cttatatttt 151 ctttgTATAA AATgtaaact cgttaacaca cacaaacaaa aaaagataac 201 GTTGAAAAAA ATAAAACACA TATTTCAGAC TGTAGTTTAG ATGTGGTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01015 Mean Expected Number 0.008 -strand -80 : -89 gAAATGAAAG AC RSP01761 Mean Expected Number 0.001 +strand -133 : -122 CCAAACCTTCTc Totally 2 motifs of 2 different REs have been found Description of REs found 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT3G02120 |PROD: the same as GENE |377104..377720 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.29 C - 0.24 1 aaatcaatcc tatttttact aaaaagacat caaaacattt tctttttaaa 51 atccaaacgg tcactaatct cactaagaaa caactgtaca cagacttaag 101 ataatgtaaa aaatccgacc gttgtgaccC CAATttccac taacggtaat 151 gttcttagcc aatcacatac aTATAAATCa aacttacacc caaatccgtc 201 ACACTCAATT TCATCTCTTT CTCTAATGGA GTTGCAACAA TCAAATCTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.002 -strand +22 : +14 AGAAAGAGA AC RSP01231 Mean Expected Number 0.009 +strand -82 : -77 CCGTTG Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L39 (RPL39B) |LOCUS: AT3G02190 |PROD: the same as GENE |complement(405823..406408) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.28 C - 0.21 1 aagagagaga gaagaaaatg aaaccctaaa tctctatatt tttttctttt 51 ccggttaaag gtaaccggaa ccgaatacga ttcctaaatt aacggtttac 101 ctatctgacg gctaataaat tatgagaaaa ctccaacggt caggATTGAg 151 ctctagtcca caaccctTAT AAAAAtcgat ttcttcctca gttaacattt 201 GAGAAGATTA GGGTTTAAAC GCTGCCGTGT TCCGCCGGAT CGCCACCGTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +8 : +16 TTAGGGTTT AC RSP00279 Mean Expected Number 0.002 -strand -172 : -180 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -180 : -172 AAACCCTAA AC RSP00369 Mean Expected Number 0.001 -strand +16 : +8 AAACCCTAA AC RSP00864 Mean Expected Number 0.001 +strand -199 : -191 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -197 : -189 AGAGAGAGA AC RSP01223 Mean Expected Number 0.000 -strand -62 : -70 CCGTTGGAG AC RSP01303 Mean Expected Number 0.005 +strand -181 : -172 gAAACCCTAA AC RSP01303 Mean Expected Number 0.002 -strand +17 : +8 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand +17 : +8 TaAACCCTAA AC RSP01497 Mean Expected Number 0.003 -strand -89 : -98 GCCGTCaGAT Totally 11 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1129. Group TF: C-myb /AC: RSP01223//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: C-myb motif /TF: C-myb 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G02250 |PROD: the same as GENE |complement(423808..427068) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +685 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.35 C - 0.13 1 ttgattatac tcctcatcat taatctttaa gacttagttc aaatcggtgt 51 agtatttgtt tttgaatttt gatgaatcaa atcaatgtaa ttggcaaaaa 101 cgaatccgtg ttatatttta aagatATTGT tcccttaaga gatattttat 151 tttgatcagt ataTATAAAA Agatgaagca aatataacaa tgggttccaa 201 TTTCCAACTG TCTTTACACA GAAAAGGTTA ACAAAAACGG TCAGAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00431 Mean Expected Number 0.006 -strand +15 : +4 AAaGACAGTTGG AC RSP00741 Mean Expected Number 0.006 +strand +22 : +33 AAAAGGTTAAcA Totally 2 motifs of 2 different REs have been found Description of REs found 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: plant adhesion molecule, putative |LOCUS: AT3G02460 |PROD: the same as GENE |505441..508410 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +676 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.36 C - 0.14 1 taaaaaacaa aacacagaac aggaaaaact gtatgaataa gcattgggca 51 ttataaatcg agtcatggcc tcatgggcct tttagctatt gggctatctt 101 tcattttggg cttattttaa aaaataggtt actgattttt ttgaATTGGt 151 ataattaatt tgacgccTAT ATATAtatat atacccaatt aaattgtttt 201 GTTCCTAAAA CTTTATGAAT CATAAATTCA TAATCGTCGT GATAAAGCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00535 Mean Expected Number 0.002 +strand -36 : -20 GCCT-- +7 bp --TATATA AC RSP00790 Mean Expected Number 0.001 -strand +31 : +21 aTGAATTTATG Totally 2 motifs of 2 different REs have been found Description of REs found 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: phosphomannose isomerase type I family protein |LOCUS: AT3G02570 |PROD: the same as GENE |complement(543356..545602) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.31 C - 0.24 1 ggcccacaac caacggacgg acgttaatac cgtcggcaaa acacgtgatt 51 tctttgaaca tctgtcactt ttgcactttc ttaagttaaa catcgcaacc 101 ctacatttat attttattcc aacttttgac ccccatactt ttgattttac 151 aatcatacct tcctctgttT ATAAAACata aaaaaatcca cgattcgggg 201 GTAAAGAGAA AAGCTTTGAG TCTTCCATTG ACATGGGCGC TTAGCTTATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.009 -strand -181 : -186 CCGTCC AC RSP00524 Mean Expected Number 0.009 +strand -160 : -154 ACACGTG AC RSP00750 Mean Expected Number 0.003 -strand -46 : -57 TgATTGTAAAAT AC RSP00961 Mean Expected Number 0.006 -strand -126 : -133 TGCAAAAG AC RSP00978 Mean Expected Number 0.002 -strand -152 : -161 ATCACGTGTT Totally 5 motifs of 5 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: proline-rich family protein |LOCUS: AT3G02670 |PROD: the same as GENE |complement(573787..574633) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.30 C - 0.17 1 ttatagaatg tattataaat ttgtaaaaaa tagtcaacat taacccaaaa 51 ttggttgtca tgtccataga gagattaaaa cttcttataa tgtgtatata 101 ttttttgaaa atttccttat aattaaatta taacaaaaat aaagatggag 151 ccaacctaaa tataggcgcc taTATAAACA agcactaaac acctgctact 201 AACAGACAAA AACATTTCCA CACAATGGCA TCTTTAGCGA CCACTTTAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00949 Mean Expected Number 0.005 +strand -170 : -163 TAGTCAAC Totally 1 motifs of 1 different REs have been found Description of REs found 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ILR1 |LOCUS: AT3G02875 |PROD: IAA-amino acid hydrolase 1 (ILR1) |631920..634081 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.11 T - 0.38 C - 0.19 1 accgtaaata tactacattg tatcattttc atattttatc tttggtattt 51 cattattttc ttcacattac aaccataaat tatgaatttc acattagagg 101 cgtatacgta tttaaaaacg attaaaagag tttccaaaaa cgtgtgtaaa 151 ttacgtacta TATAAATAtt aaaaatggat cggtgatcca actccttctc 201 CTTCATCATC ATCGTATTCA CCGTTGTCCT TTCTTTCATT GACACTTGCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.001 -strand -13 : -23 GATCAcCGATC Totally 1 motifs of 1 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G03150 |PROD: the same as GENE |complement(727561..729467) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.28 C - 0.18 1 agatatatta agtagtccgt ttctttaaag tcggctttag attcacacag 51 tgtcgatttg tcaagtaacg gcgtcaaaag cgaaacggca acgtttggta 101 ggtgagacac gtggatcaga tagtgttttg tctcctaatC CAATctcttt 151 caaagcatac ataataaatg caTATATATA agcacacatt aaacggagtt 201 AAACTCATCA TACATTACTG ACTAAAAGAA GCAAAATCTT GAGTAGAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.002 -strand -15 : -26 TGTGcTTATATA AC RSP00057 Mean Expected Number 0.004 -strand -86 : -95 TCCACGTgTC AC RSP00068 Mean Expected Number 0.007 +strand -95 : -86 GACACGTgGA AC RSP00079 Mean Expected Number 0.002 -strand -95 : -104 CtCACCTACC AC RSP00188 Mean Expected Number 0.004 -strand -86 : -95 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -95 : -86 GACACGTGGa AC RSP00286 Mean Expected Number 0.001 -strand -94 : -104 TCTCACCTACC AC RSP00340 Mean Expected Number 0.004 -strand -86 : -95 TCCACGTGTC AC RSP00351 Mean Expected Number 0.000 +strand -105 : -93 TGGTAGGTGAGAc AC RSP00489 Mean Expected Number 0.007 -strand -97 : -106 cACCTACCAA AC RSP00524 Mean Expected Number 0.009 +strand -94 : -88 ACACGTG AC RSP00651 Mean Expected Number 0.001 -strand -98 : -108 ACCTACCAAaC AC RSP00682 Mean Expected Number 0.001 +strand -95 : -86 GaCACGTGGA AC RSP00880 Mean Expected Number 0.005 +strand -118 : -109 aAACGGCAAC AC RSP01035 Mean Expected Number 0.009 -strand -89 : -95 ACGTGTC AC RSP01184 Mean Expected Number 0.001 -strand -94 : -105 TCTCACCTACCA AC RSP01255 Mean Expected Number 0.002 +strand -94 : -87 ACACGTGG AC RSP01274 Mean Expected Number 0.004 -strand -86 : -95 TCCACGTgTC AC RSP01453 Mean Expected Number 0.008 -strand -98 : -104 ACCTACC AC RSP01600 Mean Expected Number 0.008 +strand -53 : -46 TTTCAAAG AC RSP01687 Mean Expected Number 0.006 +strand -169 : -163 CGGCTTT AC RSP01722 Mean Expected Number 0.000 -strand -85 : -96 ATCCACGTGTCT AC RSP01734 Mean Expected Number 0.010 -strand -86 : -92 TCCACGT Totally 23 motifs of 23 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 336. Group RE: 13 bp-box /AC: RSP00351//OS: Nicotiana tabacum /GENE: LTR-Tto1/RE: 13 bp-box /TF: unknown 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G03270 |PROD: the same as GENE |complement(761318..763111) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.19 T - 0.24 C - 0.17 1 aatactctca gtaacaaaga attttaagaa aagaagcgag agagagagac 51 ctagtagttt caagaatctc cccatagaag aaaaagacaa tcattaaata 101 tctcgaattc tgtgtgcgCC AATaatattc tccaaagtct aaaccatcaa 151 accggttatt atatacaTAT AAATTagact accgtaatca atttctactt 201 AGAGATCATC GAGAGGGCAA GAGAGAAAAA TGGGAAAGGC ACGTACGGTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.009 -strand +46 : +40 GTACGTG AC RSP00864 Mean Expected Number 0.003 +strand -162 : -154 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand -160 : -152 AGAGAGAGA AC RSP01167 Mean Expected Number 0.003 +strand -106 : -98 TAAATATCT Totally 4 motifs of 3 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: transferase family protein |LOCUS: AT3G03480 |PROD: the same as GENE |complement(828303..829903) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.33 C - 0.14 1 ttttgattag tggaaaaaaa aaaaatcgtg tctacatgga gtattgatgt 51 gtttacctat atctattgtt taaggttaat acattctaga gtcgagacaa 101 aagaaatctc ataatagtat aataccaaac taacacacgt aaaatgtgca 151 atactatata actacgTATA TATAtgtatg tgtggtgaag acagtatctc 201 GTACGTGTGA TTCTATCTTC AAAGTATCAA AGTATGGACC ATCAAGTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.007 +strand +1 : +7 GTACGTG AC RSP00163 Mean Expected Number 0.003 -strand -97 : -107 tCTTTTGTCTC AC RSP00280 Mean Expected Number 0.004 -strand -161 : -170 TCCAtGTAGA AC RSP01091 Mean Expected Number 0.009 -strand +16 : +6 ATAGAATCAcA AC RSP01261 Mean Expected Number 0.005 -strand -59 : -66 TTACGTGT AC RSP01725 Mean Expected Number 0.001 +strand -68 : -57 AcACACGTAAAA Totally 6 motifs of 6 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G03610 |PROD: the same as GENE |868831..871818 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +655 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.23 T - 0.29 C - 0.18 1 ggtcgggtcg gtctggtctg gtcgtgttgg gtatgagcta attaccggcc 51 catttcggta gatttcagat gcctaaacca aacatcgtaa accggatgac 101 aaaccgggtc gttgaccaac aaaagagaaa taaaataaat agtaacgtat 151 aagagagatt aatcgaAATA AATAaaattt ctgggaaatt tggcggcgac 201 AGTTTCCTTT GGATTTCAGA TTTCGTGAGC TTATTCTTAC CTTTCTCTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00858 Mean Expected Number 0.005 -strand -155 : -162 GGTAATTA AC RSP01209 Mean Expected Number 0.006 -strand -76 : -85 CTTTTGTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G03890 |PROD: the same as GENE |complement(999474..1002491) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +488 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.33 C - 0.11 1 tagtatttag aattttagtt tttttggggg tcaaaaacaa tagttttagt 51 tatgttagtg aataaataga ttcagaaaaa actgtcgatc ttatttgaat 101 agttcgtaaa agagagggtt ctgtttGCAA Ttttcctaac ttttagatcc 151 tgagttctgc aaTATAAATA aagaacaaaa caaaacacga tcacgaggca 201 ATTTTGAGAC AAGAATGGTG TTGAATAGTC GATTGGTGGA GACAACAGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00837 Mean Expected Number 0.001 -strand -110 : -119 AGATCGACaG AC RSP01641 Mean Expected Number 0.007 -strand +14 : +5 TCTTGTCTCa Totally 2 motifs of 2 different REs have been found Description of REs found 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT3G03990 |PROD: the same as GENE |1033775..1034913 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.25 C - 0.20 1 ttaaaatata tcagatgtgt gacgaataat caacgcatgc tcttgtatcc 51 ataaacttca aaagccaatc gaaagtattg gataataata ataataaatg 101 cagtggaaaa aaaaagatga taaaggaatt ttcattacac acacacacct 151 acccaaacaa gtttttaTAT AAACAgtatc caactctctt ctttaccctc 201 AAACCCAAAC ACATAAAAAA ATGAGTCAAC ACAACATCTT AGAAGCTCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.005 +strand -57 : -48 CaCACCTACC AC RSP00130 Mean Expected Number 0.000 +strand -120 : -101 gATAATAATAATAATAAATg AC RSP00190 Mean Expected Number 0.007 +strand +22 : +28 TGAGTCA AC RSP00525 Mean Expected Number 0.007 -strand -183 : -189 ACATCTG AC RSP00677 Mean Expected Number 0.007 +strand -101 : -96 GCAGTG AC RSP01469 Mean Expected Number 0.004 +strand -190 : -181 TCAgATGTGT AC RSP01686 Mean Expected Number 0.005 -strand -180 : -185 CACACA Totally 7 motifs of 7 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 646. Group RE: Box 1 /AC: RSP00677//OS: Hordeum vulgare /GENE: Amy32b/RE: Box 1 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ANAC046 |LOCUS: AT3G04060 |PROD: no apical meristem (NAM) family protein |complement(1053373..1055170) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.40 C - 0.17 1 tgagatatca tttaagatat ttttgagtgt tttctaattg tggggctttt 51 tcaacaagta aggaagttgc ttagagctta cgtgtctctt ctacatcacc 101 aaaaaaataa gaaaaaaaca aaacataaag aaaagaaaca ttATTGTttt 151 ttttagctct tatcttcctc taTATAAAGA catttttttt ctaccttcac 201 ATACTTTTAT TTTCATTTCC TTTAACTGCA TAGTTCTTCC TCAAATTGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.002 +strand -122 : -115 TACGTGTC AC RSP00227 Mean Expected Number 0.009 -strand -35 : -43 AAGATAAGA AC RSP00233 Mean Expected Number 0.005 +strand -111 : -102 TCTACaTCAC AC RSP00247 Mean Expected Number 0.002 -strand -115 : -124 GaCACGTAAG AC RSP01000 Mean Expected Number 0.001 -strand -153 : -162 AaGCCCCACA AC RSP01003 Mean Expected Number 0.010 +strand -147 : -138 ACAAgTAAGG AC RSP01016 Mean Expected Number 0.006 +strand -67 : -60 AGAAACAT AC RSP01035 Mean Expected Number 0.005 +strand -121 : -115 ACGTGTC AC RSP01261 Mean Expected Number 0.004 +strand -123 : -116 TTACGTGT Totally 9 motifs of 9 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ARR22 |LOCUS: AT3G04280 |PROD: |complement(1129951..1131091) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +395 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.43 C - 0.13 1 tttcttgtct aaattatcaa ataacatact ctcttttgtt tacttataaa 51 cgatatgaaa gaaataaata aaaagaacat agaatcttat tatgatctag 101 aagaattaat taaagaaata tatatatatt ttttttcatt tctactcatg 151 tttcttatac attcTTTAAA TTtgttcacc attttgattt acttgttctc 201 ATATTAGTTT GTTATACAAC TCACTTAGAA TAATGTAGAT TACATTTCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00357 Mean Expected Number 0.001 +strand +17 : +24 CAACTCAC AC RSP00593 Mean Expected Number 0.004 +strand -119 : -111 GAATCTTAT AC RSP01031 Mean Expected Number 0.010 +strand -120 : -113 AGAATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT3G04290 |PROD: the same as GENE |complement(1133331..1136297) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.31 C - 0.23 1 ctaacattta ttacatccaa acaacaaaca agaccaattt ttatggtgta 51 tcagttggca gcctctatta atgtctctat tttcttaaaa tcacaccaac 101 aacgaaaaaa aaaaaaaaaa aaaaacagat acacattact tATTGAaccc 151 taaacctatt gtcagtgTAT ATATAtaaca cacactctcc atatgctctc 201 ATATCATACG TCAATTTATA AACGTTTCTT CTCATTCGTC ATCTAGTCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 +strand -123 : -113 TATTTtCTTAA AC RSP00850 Mean Expected Number 0.003 -strand -142 : -147 GCCAAC AC RSP01013 Mean Expected Number 0.006 -strand -6 : -15 CAtATGGAGA AC RSP01304 Mean Expected Number 0.008 +strand -57 : -48 TGAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G04780 |PROD: the same as GENE |complement(1311253..1313096) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.25 G - 0.24 T - 0.41 C - 0.10 1 ggaagaggaa ggtttagtgg caagttatag agttttgtag ttggtttgag 51 ggtagtattg gaatactagt tttaaggttg ttgtatttgg gttggtgaag 101 ataataacct gctaaaCCAA Tcagagtgtt aaatatacga tgtcgttttt 151 gtttctttga gaacagagtt aTATAAAAAc cttttttggt ttggtttcgt 201 GGAGAGTCTA ATTATTTTCT TCCACTTTCT CGATCTTTGA GATTTCTTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.002 +strand -84 : -78 CCAATCA AC RSP00950 Mean Expected Number 0.006 -strand -102 : -112 tTCACCAACCC AC RSP01033 Mean Expected Number 0.008 +strand -21 : -12 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.004 +strand -21 : -12 CCTTTTTTGG AC RSP01509 Mean Expected Number 0.000 +strand -85 : -77 ACCAATCAG Totally 5 motifs of 5 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 40S ribosomal protein S3A (RPS3aA) |LOCUS: AT3G04840 |PROD: the same as GENE |1329699..1331581 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.32 C - 0.17 1 atggttttat aatcgatttc agactcaagt ggaaaaaaga aatattggac 51 accttagtgg gccattagat gcaagtaaat acaactttag gcttagtcca 101 ttactggtaa atttgaaggc ccaaaacttt gtttatcctg ggtgtgaaac 151 tcaaacccta gaagaagacT TTAAATTgaa gaagcgccgt agcagcattt 201 TAGGTTAAAA CTTATTGTTG ATTCTTCTCT ATTCGTCGTC GACCTATTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.009 -strand -68 : -77 AACAAAGTtT AC RSP00522 Mean Expected Number 0.009 -strand -169 : -175 CCACTTG Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ACP1 |LOCUS: AT3G05020 |PROD: acyl carrier protein 1, chloroplast (ACP-1) |complement(1391658..1392960) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.25 T - 0.27 C - 0.19 1 gatctgattg gtacggtttg gttcgatttt cgtcaataga ataaaaaact 51 gtatgaatag aataatccgg ttaaattggc acgtgaaatg cgaaatgggc 101 tgagtcattc attatggaaa gcccatgtgA TTGGtaggga acgacgtcgg 151 gtgaagggag gggaagagct TATAAATGaa agcagcaagc agagcagttc 201 ACGCTCTTTG TACACTCCGC CCTCTCTCCC CATCTCTTTC GACAGATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00871 Mean Expected Number 0.009 +strand -102 : -93 GcTGAGTCAT AC RSP00966 Mean Expected Number 0.003 +strand -123 : -114 GGCACGTGAa AC RSP01015 Mean Expected Number 0.008 +strand -28 : -19 tAAATGAAAG AC RSP01073 Mean Expected Number 0.001 +strand -15 : -7 CAAGCAGAG AC RSP01091 Mean Expected Number 0.004 +strand -165 : -155 ATAGAATaAAA AC RSP01509 Mean Expected Number 0.001 -strand -189 : -197 ACCAATCAG AC RSP01703 Mean Expected Number 0.002 -strand -51 : -60 CCGACGTCGT Totally 7 motifs of 7 different REs have been found Description of REs found 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G05070 |PROD: the same as GENE |1416165..1417743 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +321 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.23 G - 0.20 T - 0.41 C - 0.16 1 ttaagagtgt gttgttatag cagttaaaga cgagccgagc cttcttaaaa 51 cgccgcgtat tgtaaggggt atttctataa cttccatagt tagggtttag 101 gttttaagat taatgggcct gactgaatgg atattttaat ctggcccgtt 151 tataaTATTA ATAcgtgggc gttttattgt tctcttcccc cttaatagtt 201 TTTCTTTTTT AATCCCTTTG TTTCTCTGTG GTATTCAACA AATTTGTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.001 +strand -150 : -144 CGCCGCG AC RSP00279 Mean Expected Number 0.005 +strand -111 : -103 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 -strand -103 : -111 AAACCCTAA AC RSP01303 Mean Expected Number 0.008 -strand -102 : -111 TAAACCCTAA AC RSP01304 Mean Expected Number 0.005 -strand -102 : -111 TaAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT3G05180 |PROD: the same as GENE |complement(1468404..1470550) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.42 C - 0.15 1 acgagaggag gacttcatca tttgtttcta tctatatttc caagcaaact 51 cacattctac tttcattaca ttatgtatac acgcatacat ttgtatccac 101 ataaggatgt atattttttt ttatctttta ttttattttt ttgttaaaac 151 cataatatat aatgTATATA TAgtatgtaa gaaatgataa ggctgaaatt 201 ATATTGTTTT GAGCCATGGA AACTCTTTTC CACACTCTTC TTAGATTATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.004 -strand +23 : +15 GTTTCCATG AC RSP00559 Mean Expected Number 0.005 -strand +3 : -8 TaTAATTTCAG AC RSP00627 Mean Expected Number 0.001 +strand -17 : -9 ATGATAAGG Totally 3 motifs of 3 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: sporozoite surface protein-related |LOCUS: AT3G05460 |PROD: the same as GENE |1577806..1578740 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.19 1 attttattcc atcaacagtt ttgaaatata tagtagtata gtaccgcgta 51 ccatatatag ttagtgtagt caaactcaaa tcaattagta ttaactctta 101 agattttctg gtcaaaccca aaacgtacat tccttctttt ggttaaaacc 151 ccacaacgta cattgcatTA TAAAAAaacg acgaaggtta cttaagcttc 201 ATCACTAAAA GCAAAATACA CCGTAACAGT TTTCGTTGGA AGATGAAGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.004 -strand -59 : -68 CCAAAAGAAG AC RSP01209 Mean Expected Number 0.003 +strand -68 : -59 CTTCTTTTGG AC RSP01733 Mean Expected Number 0.009 +strand -157 : -152 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: rubber elongation factor (REF) family protein |LOCUS: AT3G05500 |PROD: the same as GENE |1593440..1595021 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.27 C - 0.24 1 tcttagcgac acacatttac ttaacccaca agtcgtcaac ggcccaaaga 51 atatggatgg ttacgagaga gcgcatacaa agacgcgctc ctaaccgacC 101 CAATtagaga aaacacacgc ttgcttacac gcgtaataag gttcttacac 151 gtgccaaaaa cccttgttaT ATAAAGAaac ctaggtcacg tcaatttctc 201 ATCACCATTG CTTTGTTTTG TTCGTCAAAT ATAATCAATT TTAAATTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00416 Mean Expected Number 0.007 -strand -142 : -148 CATCCAT AC RSP00447 Mean Expected Number 0.003 -strand +17 : +8 AaCAAAGCAA AC RSP00523 Mean Expected Number 0.009 +strand -74 : -68 ACACGCG AC RSP00817 Mean Expected Number 0.004 +strand -55 : -46 TACACGTGCc AC RSP00974 Mean Expected Number 0.002 +strand -55 : -46 TACACGTGCC AC RSP01152 Mean Expected Number 0.003 +strand -55 : -46 tACACGTGCC Totally 6 motifs of 6 different REs have been found Description of REs found 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G05800 |PROD: the same as GENE |1727347..1728246 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.33 C - 0.16 1 ttttttcatt caccagttca atcataattg gccaatgtga ttttagacgt 51 acattattat taaagaaaaa taaataaaaa ataatggtat tcaattcgaa 101 aaacccaaga aaatatagaa aataATTGAt ttaagggtgg cttctccaat 151 ctctcccaaa tgttTATATA TAgagaatta gatatcccct ccaattactc 201 AAAATTATTA TCAAAATAAG AAAGAGCTCA ACATTGTTCT CTGACTCTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.006 +strand -117 : -110 ATGGTATT AC RSP00855 Mean Expected Number 0.000 -strand -183 : -194 AACtGGTGAATG AC RSP01237 Mean Expected Number 0.001 -strand -26 : -35 CTCTATATAT Totally 3 motifs of 3 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 792. Group RE: 12 bp element /AC: RSP00855//OS: Arabidopsis thaliana /GENE: FIL/RE: 12 bp element /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GLP8 |LOCUS: AT3G05930 |PROD: germin-like protein (GLP8) |1770343..1771356 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.31 C - 0.22 1 gtgtccaaca aaacaaaact ctttttaaac accaaatttt aaccaacgat 51 cagaacacct aaacctaatt atggcaaaat tttaaaatta acacatctat 101 ggcccctctc cataattatc tcttctccat tggttttccA TTGGttaaat 151 cttctttacg tagataTATA AATTgagaaa caatgttaaa gtattttctc 201 AAACTCATCA ATAACATCTT ACAAACAACA ACAATCAACA ATGGCAACTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00395 Mean Expected Number 0.008 +strand -45 : -36 TTACGTAGAT AC RSP00880 Mean Expected Number 0.004 +strand +39 : +48 CAAtGGCAAC AC RSP01013 Mean Expected Number 0.006 -strand -68 : -77 CcAATGGAGA AC RSP01463 Mean Expected Number 0.009 -strand -28 : -40 ATTTATATATcTA Totally 4 motifs of 4 different REs have been found Description of REs found 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: autophagy 8h (APG8h) |LOCUS: AT3G06420 |PROD: the same as GENE |complement(1954996..1956399) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.30 C - 0.18 1 aagagtagaa taaaagagtt tgtaatacac ttgattgttc ttgcagctat 51 gcgtgttata tattttgatg ggcccaaaat tatgaataga ggcccataga 101 taaactgtga cgtgcacaag aaatcggaca agtccaaaaa gtggataagt 151 gcgtgtcgtc tttcTATAAA TAatctcttt tctctcatct tttaccgttt 201 CTTCTCGAAC AATCAAAAAC GAACTAACCA AACATAAAAT TGAACACATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00399 Mean Expected Number 0.001 -strand -86 : -93 GCACGTCA AC RSP00445 Mean Expected Number 0.009 -strand -18 : -27 AgAAAAGAGA AC RSP00891 Mean Expected Number 0.007 -strand -135 : -143 AAAATATAT AC RSP01296 Mean Expected Number 0.006 +strand -37 : -29 CTATAAATA Totally 4 motifs of 4 different REs have been found Description of REs found 381. Group TF: AP1-like leucine zipper TF /AC: RSP00399//OS: Nicotiana tabacum /GENE: RNP2/RE: ATF /TF: AP1-like leucine zipper TF ||Identical REs AC: RSP00884 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L29 (RPL29A) |LOCUS: AT3G06700 |PROD: the same as GENE |complement(2117360..2117984) |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.16 1 aagaaattcc aaattttgaa aaaaatggtt tgctgcttta tttatacccc 51 aatttgtaaa aggccacgac tctgggttca ttcaatgggc ttatatgatt 101 tagcaacgag atagattaat tagaggccca tatatgattt attagggcac 151 gttggtcatt taaagtccac TATAAATTca atcagaaatt agggttttgt 201 GTTGCAGACG CCGTATTTGT ATCGCGGAAA GTAAACCTAG CCGAGCAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 +strand -12 : -4 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -4 : -12 AAACCCTAA AC RSP00501 Mean Expected Number 0.006 +strand +42 : +48 CGAGCAG AC RSP00681 Mean Expected Number 0.005 -strand -79 : -87 TAATTAATC AC RSP00866 Mean Expected Number 0.002 +strand -54 : -47 GCACGTTG AC RSP01303 Mean Expected Number 0.005 -strand -3 : -12 aAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AT-IMP |LOCUS: AT3G06720 |PROD: importin alpha-1 subunit, putative (IMPA1) |2120330..2124137 |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +235 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.30 C - 0.15 1 aggatcttca aattgttgag atataaagaa gaatacatta gcttgcctca 51 aagaacacaa tagtaagggg ctaattatgt aaataaccta attgtggaca 101 cctgtttgca taaataaata gtggcaaaac tgtaaataag tgaatatttt 151 agcaattaca gTATAAATTa agaacaaaga ttaaaaataa ataaaaaagt 201 GCTTTCATTC TTTGGATGCG CTGTTGTCAA CTTGTCCCTC GCTGCCTCTG 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07480 |PROD: the same as GENE |2388958..2389817 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.33 C - 0.20 1 atgtttatag atttttttct gtcttaaatg cctcataaaa tacatagaag 51 caatgttttc ttcaacccaa actaaaccaa acaaaatatt tggattaata 101 ttgaccggtt cgATTGAacg gtccagttag aaatttgggc ttgtaagtat 151 gtaacttatc tttgggctTA TAAAGAagcc catctccaaa ttagcgtttc 201 ACCCTCACTC ACTTTTCCGG TTTCAACCAT TAGCACAAAA AATCTGAGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 +strand -83 : -76 ACGGTCCA AC RSP00888 Mean Expected Number 0.005 -strand -185 : -193 AAAAATCTA Totally 2 motifs of 2 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: thymidine kinase, putative |LOCUS: AT3G07800 |PROD: the same as GENE |complement(2489393..2491017) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.32 C - 0.25 1 ctttatgaaa agagagaggt aaaataaaaa gattcgctct aaaaaactgt 51 ttccctccaa agatgtaatt tttttgaaaa aacctcccat tcaaaatttc 101 aaacccttat ctttgacaaa tcttctccaG CAATtttctt ccttgttcaa 151 cttctggatg tccgcgTATA TATAtcttca acaagctatt caccatcgct 201 ACCTAAAACC ACAAGCAAAT TGAACCCTTC TCCCTTTTTT CATCTACAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00091 Mean Expected Number 0.001 -strand +30 : +19 GAAGGGTTCAAt AC RSP00171 Mean Expected Number 0.008 +strand -189 : -184 GAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RabGAP/TBC domain-containing protein |LOCUS: AT3G07890 |PROD: the same as GENE |complement(2516310..2518917) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.38 C - 0.14 1 ttttttaaca gaagctgtaa tttttttttt gactgcgtag aggagaagaa 51 gattagaggt gttcaaaggt gataacgttt gcagaacgtg accacaatta 101 taatATTGAa aggtatcaga aaactttgct aagatttatt ataaactcct 151 tttttaTTTA AATTcaagag atatcaaaca actacttcat tttttttttt 201 GTAGCAGCCG AGTACTCTTT TTTGACGGTG TCCGTGTTCG TGCTTGGTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.005 +strand -195 : -188 TAACAGAA AC RSP00894 Mean Expected Number 0.007 +strand -40 : -33 AATTCAAG AC RSP01093 Mean Expected Number 0.004 -strand -67 : -77 TCTtAGCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 2 |LOCUS: AT3G08590 |PROD: the same as GENE |complement(2608477..2611424) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.32 C - 0.26 1 atgactatta caaacggcat gatccagaac attcgttcat agcagctaaa 51 actagaacat tcgtctcctt ccattttttt gggggcttca caatgtttac 101 ttgagcccaa agtaaagccc attaaATTGG taccacgtca tcgctaactt 151 ttccatttct atgtttcTAT AAAAGtctca tattatgtca gtgatagctc 201 TCAACCTACC ATACTTCACC ACATAACCAC TTCTGTCTCT GCGAATCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.004 -strand -61 : -68 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -68 : -61 CCACGTCA AC RSP00913 Mean Expected Number 0.007 -strand -59 : -68 GATGACGTGG AC RSP00915 Mean Expected Number 0.010 -strand -59 : -68 GATGACGTGG AC RSP00916 Mean Expected Number 0.007 -strand -59 : -68 GATGACGTGG AC RSP00997 Mean Expected Number 0.006 -strand -59 : -68 GATGACGTGG AC RSP01016 Mean Expected Number 0.008 -strand -33 : -40 AGAAACAT AC RSP01236 Mean Expected Number 0.008 -strand -191 : -200 TaATAGTCAT AC RSP01275 Mean Expected Number 0.006 +strand -69 : -60 aCCACGTCAT AC RSP01711 Mean Expected Number 0.009 -strand -146 : -155 CTAGTTTTAG Totally 10 motifs of 10 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ubiquitin-conjugating enzyme 11 (UBC11) |LOCUS: AT3G08690 |PROD: the same as GENE |2641148..2642669 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +345 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.33 C - 0.16 1 aataaaatca ttgctctgta ttttttgact gcatgagtcc taattggtga 51 aataaaaaaa cttttggcac gagaattaat aaatatatag aaaaggtgaa 101 ataggtgagg cggtacttgc tgatagaatc agaagcttcg agactgactt 151 gttttagatt ctctgacTAT AAAGAaaggc aaagtaacaa gtttcgtttt 201 CTCCTTTGCA CTCCATTTTT ATTCTCGATT CTCTTCTCTC CCGATAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.006 +strand -129 : -118 AGAATTAaTAAA AC RSP01091 Mean Expected Number 0.009 +strand -78 : -68 ATAGAATCAgA AC RSP01092 Mean Expected Number 0.010 -strand -37 : -47 AgAGAATCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LTP6 |LOCUS: AT3G08770 |PROD: lipid transfer protein 6 (LTP6) |complement(2664195..2664834) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.27 C - 0.21 1 aaaatgtaat taaaaagaaa taatattgtt agatacaatg cagttgaatc 51 cggagggttg gatcttaatt ggctgaaggt aaacattaaa ttcttccaca 101 actaactaac agtaacactc gtgtcctaGC AATcactctt cctcaactac 151 caatctcaaa ctctttccat cTATAAATAa cctctctatt ttctaaccct 201 AACCATAACA CAAATACACC AAAAAAAAAA AAACAGAAAG TAACATGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00745 Mean Expected Number 0.004 -strand -15 : -26 GAgAGGTTATTT AC RSP01056 Mean Expected Number 0.006 -strand +47 : +37 CATGTTACTTT Totally 2 motifs of 2 different REs have been found Description of REs found 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNAJ heat shock protein, putative |LOCUS: AT3G08910 |PROD: the same as GENE |complement(2710160..2711898) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.28 C - 0.17 1 taaataataa atatataggg ctactaagtg taaatttcct ctctttgaaa 51 cgacaccgtg attcttaatt ctgataaggt ttgacttttg agctaggttt 101 gccgaaccaa aaacagaacc ggtaaagacc aaataaaaga accggtcggg 151 tatttcttgt atctcGATAA ATAtttcgaa ccggtacgga atgatccgct 201 AGAGTTTTTC CCATTGAAGA AGATCGAGTG AAATTCGAAG AGCGAATCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.000 -strand -157 : -165 AGAGAGGAA AC RSP01600 Mean Expected Number 0.008 -strand -151 : -158 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G09085 |PROD: the same as GENE |2782156..2782688 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.39 C - 0.19 1 aaattcatcc gttataaatt aatttaacct aaaaattagt ttctctttaa 51 ttttttgttt ttgaaaatgg gcccataagt taccaaataa agccttctaa 101 aatgtgggct tttcaggccc atatATTGTt tggatttgtt tccttttttt 151 attccatttt cttgaacTAT AAATCttgtt cgtttcctct tctaaatctc 201 TCGCTTTCAC CAACCAAACC CAGAAGAAAG CTCGAGATCA ATATCGAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.003 -strand -109 : -118 CTTTATTTGG AC RSP01454 Mean Expected Number 0.009 +strand +9 : +15 ACCAACC Totally 2 motifs of 2 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATGSTU8 |LOCUS: AT3G09270 |PROD: glutathione S-transferase, putative |complement(2848295..2849293) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.29 C - 0.23 1 agcgattgag aaaagaacag gccttcaacc actaccctca tttaaagtca 51 aaaagttgac cacctaatat tcatcctatt tgttaatttc aaattttacg 101 aaacattaat ctgattattc tcgtgaccaa ctattcttca tacatccatt 151 taaccaaatc caaagtggtT ATAAATAact gctaaccatc attgctcaat 201 AAAACACACA CACACAAAGG GAAAGCCAAA CCGGTATATT TTCTTTAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01476 Mean Expected Number 0.010 +strand -160 : -153 TTTAAAGT AC RSP01602 Mean Expected Number 0.001 -strand -190 : -197 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L35 (RPL35A) |LOCUS: AT3G09500 |PROD: the same as GENE |2916986..2918036 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.29 C - 0.18 1 gatgatgcaa tgtgactgaa accataaagg tcacgtgcgt ttatttgctt 51 taggcttctc gtaatgaaag tgataataca tgggctaagg cccattaagt 101 atttctctta agttaagctA TTGGgtatga ataatgagct ttataccacc 151 caataaggag actcgtcata TATAAATGac cactcctccg ttattagggt 201 TTCTGATTCT CGGAGCTAAA AGAAGAGCAA GCAGCGGCGC AGAAGTTGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.003 -strand -162 : -171 CGCACGTGaC AC RSP00158 Mean Expected Number 0.005 +strand -159 : -149 TATTTGCTTtA AC RSP00229 Mean Expected Number 0.001 +strand -52 : -43 CCCAATAAGG AC RSP00279 Mean Expected Number 0.002 +strand -7 : +2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +2 : -7 AAACCCTAA AC RSP01006 Mean Expected Number 0.004 +strand -56 : -50 ACCACCC AC RSP01214 Mean Expected Number 0.003 -strand -43 : -52 CCTTATTGGG AC RSP01303 Mean Expected Number 0.004 -strand +3 : -7 gAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 40S ribosomal protein S23 (RPS23A) |LOCUS: AT3G09680 |PROD: the same as GENE |complement(2969050..2970376) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.35 C - 0.23 1 ttttcccgta ttattacctt aaggagttgg cataatattt gggttgacat 51 gtgatgggcc ttcttgttaa gcccaaatat aaaaataatc atttgccgtt 101 taaTCAATtt cattgcagac cggttaatgc ctaaaccagg gctctcacga 151 gtcttgaccc aagccTATAT ATAcctattt tcttatcact agggtttttc 201 AATCTCTCAC GAACTTAAAA CGTCGCGCCT TTAGCAGTTT CAGCTCATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01757 Mean Expected Number 0.004 -strand -43 : -50 GTCAAGAC Totally 1 motifs of 1 different REs have been found Description of REs found 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G09770 |PROD: the same as GENE |complement(2996283..2998195) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +355 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.31 C - 0.14 1 tgagatactt caaatggaga tgctctaata attaatggga atgtgtttct 51 aattaaaaag ataacatctt tctttctata tttttgtcgt catataacac 101 acctcaactc ttttaagtac tcgtgttgaa ttttgttttt tgaaaagaca 151 aaactcctta taatcaacgt aatTATTAAT Aacaaggaga aaaaaagtcc 201 AAAGAAAAAA AAAAGAAAGC TTTTTGGGAA CATAAACACC ATCGAAGGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.002 +strand -118 : -109 tTTGTCGTCA AC RSP00860 Mean Expected Number 0.001 -strand -124 : -132 AGAAAGAAA AC RSP00969 Mean Expected Number 0.001 -strand -108 : -117 aTGACGACAA AC RSP01013 Mean Expected Number 0.008 +strand -190 : -181 CAAATGGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AT3G09805 |LOCUS: AT3G09810 |PROD: isocitrate dehydrogenase |3008699..3011442 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.23 G - 0.18 T - 0.37 C - 0.22 1 cttaatttca tctgaccggt ttttataatt tattgatatc cggttcattt 51 gaccatggcc gtttaagaac ataggctgat gccgtttctt attttcagac 101 actaactttg tgccgtttta tttcatggaa atcgaaatgt tctctgcttc 151 tctgctggag ctagagaagg TATAAAAGta aactttttca ggtccaacgc 201 AGCAAAAAGT CTCCTCTTTC CTCTCTTTCT CTCTCTGCGT CCTTCTGAGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.007 -strand +30 : +22 AGAAAGAGA AC RSP00863 Mean Expected Number 0.004 -strand +26 : +18 AGAGAGGAA AC RSP00864 Mean Expected Number 0.004 -strand +36 : +28 AGAGAGAGA AC RSP00933 Mean Expected Number 0.004 +strand -179 : -167 TTTATAATTTaTT Totally 4 motifs of 4 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: monodehydroascorbate reductase, putative |LOCUS: AT3G09940 |PROD: the same as GENE |complement(3056384..3059153) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.31 C - 0.18 1 tatataatag ctatttagaa acattaaagg tgtggattat attatagtca 51 agtctttcca atatgaatat tatatcatcc accaatacat aattattgtc 101 aaatacaagt tgagtcagat tagtcaaata caggcaacca agactcgaga 151 tcctcatcgt ctctccactt taTATAAACC ccaagtcagt acttctcata 201 ATATACCAAA AACGAAACTG AGAAAGAAGT TTTATTTATT AATTAATGGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.005 +strand -108 : -97 TTATTGTcAAAT Totally 1 motifs of 1 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: calcineurin-like phosphoesterase family protein |LOCUS: AT3G09970 |PROD: the same as GENE |3063779..3065580 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.15 T - 0.25 C - 0.16 1 tccaaaatta gaaaatggta taactactta acactgttat gaaaaaaaat 51 tttgaaactt gtaaattctt ttgcatgttg ttagcttatg aaccaccaac 101 ttagaaagga gataagaaga agctaagaaa aactagacga ccaaaaaaac 151 atgttattat ttcgaaataa TATATATAgc caaaggccca tgaagcccac 201 AAGTACATTA TCATCATTTC AAGAAACAGA GAGAGACTAA TGGCGCAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.006 -strand -124 : -130 CATGCAA AC RSP00535 Mean Expected Number 0.002 -strand -14 : -30 GCCT-- +7 bp --TATATA AC RSP00864 Mean Expected Number 0.002 +strand +28 : +36 AGAGAGAGA AC RSP00961 Mean Expected Number 0.002 -strand -126 : -133 TGCAAAAG AC RSP01205 Mean Expected Number 0.009 -strand -92 : -101 CCTTTCTAAG Totally 5 motifs of 5 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G10250 |PROD: the same as GENE |complement(3167956..3170931) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +508 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.19 T - 0.27 C - 0.16 1 ggttttctta tttcgtaaga atcgttgact aatattgacc ggctggctaa 51 taagaagatc agataactct acaggtatgg gatccaccat tgtcaaacat 101 tttacacgtg tcagcttcct gagcttcgaa gcctgaatgt taaaattaaa 151 aaatttaaaa gaaagaaaTA TAAAAAgaag taaatcaaag aaaatggagt 201 AAAGAAATTG ATCCACGATC GATCAACAAA GTGAGGTTAG GTTCCATCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00077 Mean Expected Number 0.001 +strand +36 : +44 GTTAGGTTC AC RSP00230 Mean Expected Number 0.008 -strand +43 : +34 AACCTAACCT AC RSP00340 Mean Expected Number 0.002 +strand -98 : -89 TaCACGTGTC AC RSP00524 Mean Expected Number 0.009 +strand -97 : -91 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -90 : -96 ACACGTG AC RSP00949 Mean Expected Number 0.004 -strand -170 : -177 TAGTCAAC AC RSP00985 Mean Expected Number 0.007 +strand +35 : +44 gGTTAGGTTC AC RSP01035 Mean Expected Number 0.006 +strand -95 : -89 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -97 : -90 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -90 : -97 ACACGTGT AC RSP01458 Mean Expected Number 0.003 +strand -56 : -44 ATTaAAAAATTTA Totally 11 motifs of 9 different REs have been found Description of REs found 76. Group RE: AC-III /AC: RSP00077//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-III /TF: unknown 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATNAP7 |LOCUS: AT3G10670 |PROD: ABC transporter family protein |complement(3335080..3337392) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.37 C - 0.18 1 gtctgtttct tcatcccaag gtctcatatg tgtaaatagt ttcttgtact 51 tcaaggaaag aagcttttaa ggttttgaag aatatgcgta tcaacacaaa 101 gtgatgtcgt tttatttgtt atttccattt tttttttgtt tccattttaa 151 ttaagctagt agccgaTATA TATAttacgt ggcattcaac atgtgaaatt 201 AAAAGAATCC CTGGACCTAA CTAACCACAT CACTTCACCG GATAAAACCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -25 : -18 TACGTGGC AC RSP00064 Mean Expected Number 0.002 +strand -27 : -18 AtTACGTGGC AC RSP00234 Mean Expected Number 0.003 +strand -138 : -129 GCTTTTAAGG AC RSP00247 Mean Expected Number 0.003 -strand -18 : -27 GCCACGTAAt AC RSP00595 Mean Expected Number 0.003 -strand -45 : -53 GCTTAATTA AC RSP00985 Mean Expected Number 0.008 -strand +22 : +13 AGTTAGGTcC AC RSP01034 Mean Expected Number 0.003 +strand -24 : -18 ACGTGGC AC RSP01469 Mean Expected Number 0.010 +strand -177 : -168 TCAtATGTGT Totally 8 motifs of 8 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pectinesterase, putative |LOCUS: AT3G10720 |PROD: the same as GENE |complement(3354452..3357619) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +1531 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.25 C - 0.22 1 atgtttggtc gtcgtgacgg tggaccaccg gctccaaaaa aactcttcat 51 ttgaccaaaa cgagtataac ccttaattat tagaccaaca tgcattacat 101 aaatgataaa ttcagtttcc ctcgagccca tgcattcatt aaatagcaga 151 aagctcctcg tatagtcTAT ATATAtagca gattttagat ccaaaataac 201 AAACACCATC AATACACAAA CAAAACAAAA AGGATGAAAA TGCAAACACT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.008 -strand -185 : -190 CACGAC AC RSP00383 Mean Expected Number 0.010 -strand -145 : -151 GGTCAAA AC RSP01003 Mean Expected Number 0.008 -strand -121 : -130 AtAATTAAGG AC RSP01013 Mean Expected Number 0.003 -strand -148 : -157 CAAATGaAGA AC RSP01014 Mean Expected Number 0.003 -strand -148 : -157 CAAATGAAGA AC RSP01068 Mean Expected Number 0.008 +strand -188 : -180 CGTGACGGT AC RSP01237 Mean Expected Number 0.008 +strand -36 : -27 gTCTATATAT AC RSP01237 Mean Expected Number 0.008 +strand -34 : -25 CTaTATATAT AC RSP01651 Mean Expected Number 0.002 -strand -137 : -145 CTCGTTTTG Totally 9 motifs of 8 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G10930 |PROD: the same as GENE |complement(3420135..3420837) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +299 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.29 C - 0.23 1 aaaaataaaa caaaaaaaag ttaactcgtt acaaatgaaa atgatatttt 51 taattggact cgatggaaag gaccaattta ttcaacacta ttgtttagtc 101 cgaacacttg ccgcgtaagt tttccaactc cccccATTGA cctttcgcac 151 tttcacaaac tccgTATATA TAtaatggat acactctctc tttgatcttc 201 ACCCACTTCA TCATTTTACA AACCAAGCAA GACTAATCCA ACAAAAAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.001 -strand -156 : -167 ATCATTTTCAtT AC RSP00247 Mean Expected Number 0.002 +strand -91 : -82 GCCgCGTAAG AC RSP00358 Mean Expected Number 0.007 +strand -76 : -69 CAACTCCC AC RSP00654 Mean Expected Number 0.000 +strand -1 : +9 CACCCACTTC AC RSP00915 Mean Expected Number 0.010 -strand +12 : +3 GATGAAGTGG AC RSP01014 Mean Expected Number 0.009 +strand -169 : -160 CAAATGAAAA AC RSP01015 Mean Expected Number 0.009 +strand -169 : -160 CAAATGAAAA AC RSP01294 Mean Expected Number 0.001 -strand -132 : -143 TTTCCATcGAGT AC RSP01577 Mean Expected Number 0.007 -strand -102 : -111 aCTAAACAAT AC RSP01733 Mean Expected Number 0.009 +strand -90 : -85 CCGCGT Totally 10 motifs of 10 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC: RSP01299 RSP01300 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: wound-responsive protein-related |LOCUS: AT3G10985 |PROD: the same as GENE |3442534..3443451 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +248 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.28 C - 0.25 1 acggtggggt caaacattag ctggctcaac tttcaaagcc ctttatcttc 51 aggtcccaca atttagttta acccaataac atggtaacac gtgtcagatt 101 aagctaaata tccaaaaacc ttaaaaatag tatgcgttac agagaatcag 151 atcccaaccc caagcctcta TATAAATCcc agaatcatca gtaccatttt 201 TCAAAATCCT TCAAGAATCG CTTCATCTTC TTCTTCTTCA ACAAATCGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 -strand -113 : -121 GTTACCATG AC RSP00509 Mean Expected Number 0.002 +strand -30 : -19 TATAAATcCCAG AC RSP00524 Mean Expected Number 0.008 +strand -114 : -108 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -107 : -113 ACACGTG AC RSP01035 Mean Expected Number 0.007 +strand -112 : -106 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -114 : -107 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -107 : -114 ACACGTGT AC RSP01600 Mean Expected Number 0.007 +strand -170 : -163 TTTCAAAG Totally 8 motifs of 6 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G11990 |PROD: the same as GENE |3817300..3817952 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.37 C - 0.13 1 ctatagtcat gttcgattca agacaaagtt taaagttaca acctgtaaaa 51 atattaatag tctttgatgt aaacgtatct taaacaaaat tattaaatgt 101 tgaagttagt aacatACAAT tattaatgaa taaatgttta atcaattaaa 151 tgtcatttag tgattgtccT ATAAAATctc ttgttttctt gttttatatt 201 ATCAATCTTA CATCCAAAAC TTAAAGTATT CTTACATCCA AAAACAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00669 Mean Expected Number 0.003 -strand +4 : -10 TGATAATATAAAAc AC RSP00778 Mean Expected Number 0.004 +strand -74 : -65 TGAATAAATG AC RSP00918 Mean Expected Number 0.002 +strand -102 : -93 GTTGAAGTTA AC RSP01598 Mean Expected Number 0.009 +strand -50 : -43 TGTCATTT AC RSP01639 Mean Expected Number 0.008 +strand -39 : -30 GATTGTCCTA Totally 5 motifs of 5 different REs have been found Description of REs found 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: similar to immunophilin |LOCUS: AT3G12345 |PROD: the same as GENE |complement(3930200..3930975) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.33 C - 0.11 1 tattttgctt tctttttagg gatctgtaaa ttttgtgatc ttactttaat 51 actttttctt tgcctcgaga aaattatgtg gaagttatat agtaaacatg 101 aaaattcaga aaaaatgaac accacaaaaA TTGTatgcta tatatagttc 151 ttataaaatg gatTATAAAC Aaaaatgtca aagttgaatt aaaagaagag 201 AAAATATAAT TCTCTTATCC AAAGAGGGAC ACACAGAAGG AGAGTGATAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ASML2 |LOCUS: AT3G12890 |PROD: expressed protein |4099206..4100476 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.28 C - 0.27 1 tgacagcatg aaaagagagt gtaaagaagt tattaacaga gcatagagtc 51 tcactaactg taagtttggt gttttcggtc agcccaattt gtgttacggt 101 cagcctgccc gaacccaaca acttgtaaca tcctcacaca aaaactcctc 151 tctatgtttc cTATATATAt agacacttgc acacactctc atttcctccc 201 AAACAACCCC AAACTTATAA CAAAATGGCA TCATCTCTTC CTCAGTTCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01071 Mean Expected Number 0.003 -strand -133 : -142 CAAACtTACA AC RSP01237 Mean Expected Number 0.008 +strand -40 : -31 CTaTATATAT AC RSP01237 Mean Expected Number 0.005 -strand -27 : -36 gTCTATATAT AC RSP01237 Mean Expected Number 0.005 -strand -29 : -38 CTaTATATAT Totally 4 motifs of 2 different REs have been found Description of REs found 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Cwf15 / Cwc15 cell cycle control family protein |LOCUS: AT3G13200 |PROD: the same as GENE |4242132..4244140 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.33 C - 0.14 1 tgtggttttg aatgtatatg taaacacatt cactatcagc attcagcaat 51 cggataacta aacaaaaaca atttgatgat ttggagattt ggaaatttac 101 agagctaaaa gtgaaaaatg ccagtgatta ataaaagaaa agataattaa 151 ggtcggttag taaaaagacg taaaTATAAA TAaaaggctt gtttttttat 201 TTTTCACTTT GTTCTCTCTC TCTCTCGTAA CACGCCTGAG AGTTCTCGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.008 -strand +13 : +4 AACAAAGTGa AC RSP00864 Mean Expected Number 0.000 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +21 : +13 AGAGAGAGA AC RSP00914 Mean Expected Number 0.005 +strand -126 : -117 GATGATtTGG AC RSP00915 Mean Expected Number 0.003 +strand -126 : -117 GATGATtTGG AC RSP01601 Mean Expected Number 0.006 +strand +2 : +9 TTTCACTT AC RSP01720 Mean Expected Number 0.001 +strand -37 : -26 AAAGACGTAAAt Totally 8 motifs of 6 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G13228 |PROD: the same as GENE |4266971..4268258 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.31 C - 0.15 1 aaaaaaaaat ggaaactgat atctcaaaaa gatctcttag aaataatttt 51 acccttatct tttatgtaat tttaattttt aaaagataat aaatggaaat 101 taatcagatt aaaagaaaaa gtcaaagaaa tcccattaaa atttagggac 151 cgacaaagag tctctctacT ATAAATAtat gagtttattc agcctaaacc 201 CTAAAATCAT TCATCGATTC AATTTCTTTT TCAAGTGACC ACAACTACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.003 +strand -59 : -53 TTTAGGG AC RSP00279 Mean Expected Number 0.004 -strand +4 : -5 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand -5 : +4 AAACCCTAA AC RSP01210 Mean Expected Number 0.009 +strand +26 : +35 CTTTTTCAAG AC RSP01303 Mean Expected Number 0.007 +strand -6 : +4 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -6 : +4 TaAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: TBP1 |LOCUS: AT3G13445 |PROD: |4379805..4382231 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +519 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.22 C - 0.22 1 ctaaatatgc aaaaatataa tagcgttata acactaaagc tgacgtggcc 51 gaaaaggagt ggactttcac ataaaaccga aagacagccg tcatcgtagc 101 attaccgcat aaatttccaa aattaccctc gatgtaacaa ggacggtcaa 151 gggtagcatg ggtatgTATA TATAggtata aaggggctta aggatcccaa 201 ATCCGAAACG CAAGTCGATG ACCTCCTCTC TCTCACAGAT CTAAAAACCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -160 : -152 TGACGTGGC AC RSP00208 Mean Expected Number 0.000 -strand -152 : -163 GCCACGTCAGCT AC RSP00214 Mean Expected Number 0.001 +strand -160 : -153 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -153 : -160 CCACGTCA AC RSP00247 Mean Expected Number 0.003 -strand -152 : -161 GCCACGTcAG AC RSP00248 Mean Expected Number 0.002 -strand -152 : -161 GCCACGTCAG AC RSP01034 Mean Expected Number 0.007 +strand -158 : -152 ACGTGGC AC RSP01280 Mean Expected Number 0.000 +strand -162 : -152 GcTGACGTGGC AC RSP01301 Mean Expected Number 0.008 -strand -26 : -35 CTATAtATAC Totally 9 motifs of 9 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G14190 |PROD: the same as GENE |4710490..4711976 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +424 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.36 C - 0.19 1 ctagccgata agaagataac ttagagaagt gtgacatgtt ttgcttctat 51 cttacatgat agtttgatgc cgtcaatttg atttatgtga tgggcctgta 101 cctgggCCAA Ttcttgatta ggcctgcatt aaaatattct gccaacggct 151 agaaactttt tctcttcttc TATAAATTta ctttttttgg cctaatcccg 201 GAGGTTCTTC ATTATTTCGT CAGAACAACA TTGAAAAGTT ACCGTTAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.007 -strand +41 : +32 TAACTTTtCA AC RSP01030 Mean Expected Number 0.006 +strand -50 : -43 AGAAACTT AC RSP01087 Mean Expected Number 0.004 +strand -105 : -98 CTGTACCT AC RSP01209 Mean Expected Number 0.001 +strand -20 : -11 CTTTTTTTGG AC RSP01678 Mean Expected Number 0.003 +strand -74 : -63 CAtTAAAATATT Totally 5 motifs of 5 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATPME3 |LOCUS: AT3G14310 |PROD: pectinesterase family protein |complement(4771909..4775126) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.31 C - 0.18 1 aacgaagatc ttatctttac gagcgaggca gcttatataa cccagtggaa 51 cgttttttgt ttttctgaaa attccactca aataatagaa tcaagaaaag 101 taaaaccaga aaaagccatt ttaaataaat agtatcgtgt ttgattttaa 151 tttcatcaac ataattatta TATAAACAcc cactcttcac gagtacattc 201 ATCATCACTC ACTAGTGTCG AACAATGGCA CCATCAATGA AAGAAATTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 -strand -184 : -192 AAGATAAGA Totally 1 motifs of 1 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase family protein |LOCUS: AT3G14370 |PROD: the same as GENE |complement(4797852..4799511) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.08 T - 0.28 C - 0.21 1 aatagttgtt taatacctaa aatcacataa taataaatga cccgttaagg 51 tcaaacatat catcactttc ccttgtcatt tcccaacttc ccaaaacccc 101 caaacataaa cttttttaaa atcatttttt caaataacta attaactatc 151 aagtctccaa tgtcttcttT ATAAATAact cagaactctc tgcctcaaag 201 ACACACAAAA AAAAAAGTGA ATCAAGAAAG AAAAAAATGG AACAAGAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.007 +strand -152 : -146 GGTCAAA AC RSP00860 Mean Expected Number 0.004 +strand +25 : +33 AGAAAGAAA AC RSP01598 Mean Expected Number 0.003 +strand -127 : -120 TGTCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G14395 |PROD: the same as GENE |4810930..4811486 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.40 C - 0.20 1 gtgtgtaaaa tatggtggtt gattaattgt gcatatctaa agataaaatc 51 atatcattga aaattaggtt tgattttgtc gggagtgtaa gttctctttc 101 acatatattA TTGTcctttt gtagatgcaa tcatgcaagt gctttaacac 151 ttccattcat actctcTATA AATTcacttc atcacttctc accaaaaccc 201 TTCACAAATA ATCTTGTCCA ACAATCTCTC ATTTCTCTCT TTCTTTTTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.010 +strand +20 : +27 AACAATCT AC RSP00861 Mean Expected Number 0.008 -strand +44 : +36 AGAAAGAGA AC RSP00881 Mean Expected Number 0.006 -strand -178 : -187 ATCAACcACC AC RSP00916 Mean Expected Number 0.004 -strand -18 : -27 GATGAAGTGA AC RSP00988 Mean Expected Number 0.000 -strand -116 : -127 CTCCCGaCAAAA AC RSP01470 Mean Expected Number 0.010 +strand -70 : -61 TCATGCAaGT AC RSP01755 Mean Expected Number 0.000 -strand -180 : -187 CAACCACC Totally 7 motifs of 7 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G14560 |PROD: the same as GENE |4889079..4890166 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +296 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.35 C - 0.19 1 taaattaaat gcaaacacga gtaaagtaga tgtctcggct ttgtttcttt 51 gcctgtccta aaaccatatc tataagtggg ttgtgcattg taccaaactt 101 gaaagatctt gcctatacgc atattccact tgtacatttg gaatttgaca 151 ttcaactaac tttattatta TATAAACAtg cccaagaatt aatttcattc 201 AGTCATGTCT CATCGATGGT CCATTATCAG TTGTTAGGCC AAAAGCTATA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.010 +strand -75 : -69 CCACTTG AC RSP00642 Mean Expected Number 0.008 +strand -195 : -188 TAAATGCA AC RSP00960 Mean Expected Number 0.006 +strand -48 : -41 CAACTAAC AC RSP01071 Mean Expected Number 0.008 -strand -61 : -70 CAAAtGTACA AC RSP01687 Mean Expected Number 0.009 +strand -165 : -159 CGGCTTT AC RSP01751 Mean Expected Number 0.001 +strand -76 : -68 TCCACTTGT Totally 6 motifs of 6 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATERF-4/ATERF4/ERF4/RAP2.5 |LOCUS: AT3G15210 |PROD: |5121429..5122569 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.25 C - 0.26 1 gaaagaggaa agaaaaacac gtggcaaaag ataagtggag gtaaaaaaga 51 aaaccatgaa aaccgctggt gttttgtaag agaagccgct aaaaccattt 101 caggctttga ctgttcacaa caaagcgccc caaaaggagc gtcgctttta 151 ctctctctcc catcctataT ATAAACAact ctctcctttc ctcttctccc 201 TTCAATTATC TATCACACCA CCACTCTCTC TCTAATCTAT CTATCCGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -184 : -176 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -183 : -176 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -185 : -176 aACACGTGGC AC RSP00530 Mean Expected Number 0.002 -strand -151 : -162 TCTTTTTTAcCT AC RSP00819 Mean Expected Number 0.002 -strand -176 : -185 GCCACGTgTT AC RSP00864 Mean Expected Number 0.001 -strand +33 : +25 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -41 : -49 GGAGAGAGA AC RSP01034 Mean Expected Number 0.005 +strand -182 : -176 ACGTGGC AC RSP01063 Mean Expected Number 0.001 -strand +16 : +5 gTGATAGATAAT AC RSP01214 Mean Expected Number 0.006 -strand -64 : -73 CCTTTTGGGG AC RSP01255 Mean Expected Number 0.002 +strand -184 : -177 ACACGTGG AC RSP01669 Mean Expected Number 0.000 -strand -172 : -189 TTTTGCCACGTGTTTTTC Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1487. Group TF: MYC2 /AC: RSP01669//OS: Arabidopsis thaliana /GENE: ERF4/RE: MYC2 BS (ERF4) /TF: MYC2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MT3 |LOCUS: AT3G15353 |PROD: metallothionein protein, putative |complement(5180674..5181407) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.16 T - 0.22 C - 0.21 1 tgtaatggat tactacaaaa aaagggaaga ataacgaata tagtgggaaa 51 aaaggagtga aatggacacg agaggttggc aacgaaaggc ttttctctcc 101 ataacccaaa aaagattcgg ttgtcacata atttgcagag attctccact 151 ctctctatcc ttcTATAAAT Tacatagcca tcggatcaca aaacagaaca 201 ACAACAACAA CAACAAACAA GAACTCAAAC ACTTCATAAC TAAACATCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.009 +strand -83 : -78 CGGTTG AC RSP00850 Mean Expected Number 0.009 -strand -121 : -126 GCCAAC AC RSP01497 Mean Expected Number 0.001 +strand -24 : -15 GCCaTCGGAT Totally 3 motifs of 3 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15760 |PROD: the same as GENE |5337560..5338470 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.32 C - 0.17 1 atattgacca aaaaaaagtc ttattctaat taaacttggt ctacatatta 51 tttttttcct tctcccacta ggacatgtga gtaacgaagc atcaaaatcc 101 atatcGCAAT ctttttctaa attttaatat atagcttttc attaaataaa 151 aaaaaacttg TATAAATAta ggagagagtc aagaaaagag ttccaaccat 201 AAAAATTTCA ACAGTTGTTA AGTTACAAGT CTCTTCAAAA ACACACACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.005 +strand -139 : -133 CTCCCAC Totally 1 motifs of 1 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase family protein |LOCUS: AT3G15890 |PROD: the same as GENE |5374254..5376281 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.41 C - 0.14 1 gttcaaaaat tttattcttc ttttggttaa agttttattt attgtttatg 51 acttttccat atcagcttct tttttaatac tatatatata tttttaaaat 101 ttgtttattt tatgcgagca aaaaaaaaaa aaagtgtgca aaaataataa 151 aaaagaacaa AATAAATAgt ctacttgtac ttctgtctct ctctctctct 201 GTTTATCAAT CTCACATCGA GACGAAATTA GAGCTACTCA GACTTGTTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.007 +strand -73 : -64 AAaAAAGTGT AC RSP00864 Mean Expected Number 0.001 -strand -1 : -9 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -3 : -11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -5 : -13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -7 : -15 AGAGAGAGA AC RSP00914 Mean Expected Number 0.004 -strand -135 : -144 GCTGATATGG AC RSP01032 Mean Expected Number 0.007 -strand -175 : -184 CCAAAAGAAG AC RSP01209 Mean Expected Number 0.007 +strand -184 : -175 CTTCTTTTGG AC RSP01283 Mean Expected Number 0.000 -strand -4 : -20 GAGAGAGAGAGAcAGAA Totally 9 motifs of 6 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G15970 |PROD: the same as GENE |complement(5408803..5411114) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +729 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.32 C - 0.20 1 aaagttataa cattagctat acaaatctgc aagaagtatt ttacaacaaa 51 tgagctacga caatacaaca tgttatatac aaaacgtaaa catcttatta 101 catgcgatga ctatcagcaA CAATatcgat ttggatataa atataacaaa 151 taatacaaaa aTATAAACTc gatttattac catttttcca atgtgctgac 201 AAGATTCGTT TTCTCTTTTA TCACTCCCCT CGGCGATCTC TCTTCTTGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.009 -strand -152 : -163 TTgTTGTAAAAT AC RSP01086 Mean Expected Number 0.008 -strand -111 : -120 TTTACGTTTt Totally 2 motifs of 2 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G16040 |PROD: the same as GENE |5443097..5443957 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.34 C - 0.17 1 tctagttgga taatggcatt atgatgactg atcgtataag attcaaagta 51 tcgttttctc gttctgtcac tcgcttatga atttgaatac aaaattagac 101 atttcacgtg gacatgattc tgtggcgcgg agtgatcgcg cgaattcacg 151 cctactacTA TATATAtata tatatatgat cacgcagaac agaatcaaat 201 ATCTGAAACT CGAAGAAACA GAGGTTCCTC TTGTGTTTTT GTTTTGGGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00535 Mean Expected Number 0.001 +strand -51 : -35 GCCT-- +7 bp --TATATA AC RSP00593 Mean Expected Number 0.002 -strand -157 : -165 GAATCTTAT AC RSP00640 Mean Expected Number 0.002 +strand -97 : -90 TCACGTGG AC RSP01091 Mean Expected Number 0.005 +strand -12 : -2 AcAGAATCAAA AC RSP01237 Mean Expected Number 0.010 +strand -43 : -34 CTaTATATAT AC RSP01734 Mean Expected Number 0.010 -strand -89 : -95 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DELTA-TIP |LOCUS: AT3G16240 |PROD: delta tonoplast integral protein (delta-TIP) |5505430..5507056 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.32 C - 0.19 1 gagttttctt acgtagatgt catatatttt agtcatttta ggcaccttcc 51 taactcaaat cacgaataga acttatgtag caaaatgtaa acacatgaaa 101 tcatttatta attcgggtcc aacgtaaccc accacaccac agaaactcat 151 taaatagtat tttttTATAA AACttaagtt atatgcatgg atacatgaac 201 GATACTCCTA TATAAAGAGA ACAGCATTCA AAAGGTCTTA TCATCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.005 -strand -7 : -15 GTATCCATG AC RSP00349 Mean Expected Number 0.000 -strand -10 : -18 TCCATGCAT AC RSP00395 Mean Expected Number 0.000 +strand -192 : -183 TTACGTAGAT Totally 3 motifs of 3 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays, Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1) 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G16850 |PROD: the same as GENE |5748580..5751303 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.34 C - 0.16 1 ttataggagt gaagtctctc attaattcat tttacttagg ggaagaaggc 51 taatataacg ctccaaaaat ctcagtgaat gatattgtct ggtcctttta 101 tgtaaaatta ataataataa ggttgattag ttactgggat caaacaaaat 151 gattaaTATT AATAttaata gcaaattcca acaaacagta agtgttaaac 201 AAATAATAAC ATGTACTTGT TTCGCAACTC TCTCTTCATC TCCTCTTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00773 Mean Expected Number 0.004 -strand -172 : -181 TGAATTAATG AC RSP00778 Mean Expected Number 0.005 -strand -172 : -181 TGAATTAATG Totally 2 motifs of 2 different REs have been found Description of REs found 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: self-incompatibility protein-related |LOCUS: AT3G17080 |PROD: the same as GENE |5825295..5825873 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.35 C - 0.10 1 gtagcgatca taatttggaa agtgttgatc atataacaac atatacttgg 51 atattttttt taaaaaaagt tagtgtcaaa acaaacatgg atcataattt 101 ggaaagtgtt gacttaagat gttacctttt tttttgtgca aaaagatgtt 151 acctatacag TATAAATAct gaacaagttt gattgaaata gttatcaaca 201 TATACTTGGA TATTTTCCAG GATTAAAAAA AAAAAAAGTT TAGACGAATT 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G17380 |PROD: the same as GENE |5950206..5953699 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.36 C - 0.18 1 aatccccttg tttaaggggt gtagtatata tgcttgctaa gttgatgttt 51 attcttgctt tttgattctg caacctcaca gggcataagt ctaaacatgg 101 aaaaagctaa aatccttaca agcaaagtat aaaggtttga tcctaaaaaa 151 cacaagattc attcTATAAA TAgaaattta atatactgat gcttatctgt 201 ATATTGACTA GTTTTCTCTC TCGTTTCTGC ATATCTTCTC ATGGCCAGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand -40 : -25 aTTCTATAAATAGAAA AC RSP00085 Mean Expected Number 0.006 -strand -25 : -40 TTTCTATTTATAGAAt AC RSP00234 Mean Expected Number 0.002 -strand -78 : -87 GCTTGTAAGG AC RSP00653 Mean Expected Number 0.003 +strand +14 : +24 TTCTCTCTCgT AC RSP01296 Mean Expected Number 0.006 +strand -37 : -29 CTATAAATA Totally 5 motifs of 4 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G17860 |PROD: the same as GENE |6119773..6123017 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +201 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.28 C - 0.23 1 cacgtgcctc gccacgcgtc tcaccacaaa aagaaacgcc acacactgca 51 cgacgatgca cgtgcctttt taaccgacta tatccggtga cgtaaccggg 101 acaacctgta gctggttttt gcgCCAATag gatatgagaa aaaagaatct 151 tttttttctt gttatagtTA TAAATTaatg gtacgattca catgtcgcat 201 GCGATTTGTT AATAAAACTA GAAATTGCGG TGAATTAACT TCATTCCACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00044 Mean Expected Number 0.001 -strand -180 : -190 aGACGCGTGGC AC RSP00063 Mean Expected Number 0.002 -strand -181 : -190 GaCGCGTGGC AC RSP00112 Mean Expected Number 0.004 +strand -113 : -106 TGACGTAA AC RSP00143 Mean Expected Number 0.004 -strand -181 : -190 GACGCGTGgC AC RSP01031 Mean Expected Number 0.006 +strand -57 : -50 AGAATCTT AC RSP01209 Mean Expected Number 0.008 -strand -168 : -177 CTTTTTGTGG AC RSP01437 Mean Expected Number 0.002 +strand -75 : -67 AATAGGATA Totally 7 motifs of 7 different REs have been found Description of REs found 43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycosyl hydrolase family 1 protein |LOCUS: AT3G18080 |PROD: the same as GENE |6191565..6194458 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.33 C - 0.24 1 tgaaatatat ctagttttat ttagtattca attttaaatt cataatgctt 51 acagccttat cctatttatt aaaaaaaaat ccaacctttc cactaatgca 101 ctcccataAC AATttaacat cgttggttca tgtattattt gttttgaaaa 151 caaaaggctt ttaaaagccT ATAAATAtcc acccaattgt tatcctcccc 201 AAACCAAACG GTCAAACCTC ACTCACCATG AGACACCTTA GCTCACCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.006 +strand -50 : -44 CAAAAGG AC RSP00383 Mean Expected Number 0.006 +strand +10 : +16 GGTCAAA AC RSP01437 Mean Expected Number 0.007 -strand -135 : -143 AATAGGATA Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxidoreductase |LOCUS: AT3G19010 |PROD: the same as GENE |complement(6556203..6557944) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.33 C - 0.15 1 ttttaaaaat cattcaacga ggaaaagtct cggtactttg agcggtcgtc 51 gaagaaaacg ttgtagtttt agtatcttat atcattaaca aaaacatatg 101 catataaaaa caaaacaaaa tcgatttatg tatcctaata atatattact 151 taaaaaaagt agtggtgtaT ATAATTAgca cattttcgtt gtagatatcc 201 ATCCAAAGTC CAAACACAGC ATAAAAGTAG CTCTATTGAC TTTTTTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.005 -strand -187 : -199 AATgATTTTTAAA AC RSP00421 Mean Expected Number 0.004 -strand -167 : -173 ACCGAGA AC RSP01078 Mean Expected Number 0.001 +strand -6 : +6 ATAtCCATCCAA Totally 3 motifs of 3 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CYP707A4 |LOCUS: AT3G19270 |PROD: cytochrome P450 family protein |complement(6673733..6676526) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.11 T - 0.39 C - 0.20 1 atttagatct attcagcttt ttcgcctgag aagccaaaat tgtgaataga 51 agaaagcagt cgtcatcttc ccacgtttgg acgaaataaa acataacaat 101 aataaaataa taaatcaaat atataaatcc ctaatttgtc tttattactc 151 cacaattttc tatgtgTATA TATAtaccca cctctctctt gtgtatttgt 201 GTATGTTTTT GTTCCCTATT ATATCTTCTA GCTTCTTTCT TCCTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.008 +strand -102 : -94 ATAATAAAA AC RSP01463 Mean Expected Number 0.004 -strand -73 : -85 ATTTATATATTTg Totally 2 motifs of 2 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: U-box domain-containing protein |LOCUS: AT3G19380 |PROD: the same as GENE |complement(6714398..6716105) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +232 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.38 C - 0.14 1 atatatattt tgtatgcttt gacaaaaatc aaccatgttt atttattttg 51 ttcaaattaa gcattattga gagtttttac aaatccattt gaacgttata 101 atagaacata aacatagtcg taaaaattat cataaagaga tgtataATTG 151 Tatatcattc aTATAAATCt taagcttcac ttcaaagatg cgactttctc 201 CCACAAAACA TATTTACGTA TATATCATCT CATGATGTTC ACTTGATTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.002 +strand -3 : +4 CTCCCAC AC RSP00857 Mean Expected Number 0.003 +strand -116 : -107 CCATtTGAAC Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G19550 |PROD: the same as GENE |complement(6787247..6788296) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.31 C - 0.20 1 cttaatacat tgatcacgtt ataaactctt tcaaactaca agtaacaact 51 tttaagctaa ccaaacaaaa aaacaaggaa caactgatga ataactttta 101 aattactatc ctcttctctt attcctccac tctcaagatt ctctacccgt 151 acagtttctg aagttTATAT ATAgaataga ccaaagagat gtcagaacac 201 AAGATCAAGT TATAGATTGA TAGAAATATA CTCGTACTAA TATCAATATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01031 Mean Expected Number 0.009 -strand -59 : -66 AGAATCTT Totally 1 motifs of 1 different REs have been found Description of REs found 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G20300 |PROD: the same as GENE |complement(7079623..7081925) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.32 C - 0.20 1 aaaccccaag tcactagtat tattgaaaat gtaaatattc gaataaaaca 51 gagccaataa gatacaaaac atgtacatct taatacgaaa tattgtagta 101 atttgtttta cgatactaaa ttACAATtta aatacggttg tcaaatccac 151 ctaaacatcg atccttTATA AATAaccata agacaatttt agccattcct 201 GATTCTGTCT TCTCCTTCTT CCAACCGCGT CATCAATTTA TATTTAGACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.005 +strand -66 : -61 CGGTTG AC RSP01065 Mean Expected Number 0.001 -strand -36 : -46 AGGATCGATGt AC RSP01733 Mean Expected Number 0.006 +strand +25 : +30 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: plastocyanin-like domain-containing protein |LOCUS: AT3G20570 |PROD: the same as GENE |complement(7186312..7187527) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.27 C - 0.24 1 tataacacaa agattctgaa gcaaagaaca aaagccattg acagaagaag 51 caagtcacat gagattccaa aactgaaaca cttctggcat ttatgctttg 101 cttagaattt gaaaaaagAC AATaaaaagc ttctctgcaa catttcctca 151 aaatcaaaaa gcatcacctt taTATAAACC catttgcctt tcatcatctc 201 ATATCAAACC CTATACCACA CTAGATTCAC CTTCACCTTT CTAAAATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.002 -strand -99 : -108 AGCAAAGCAt AC RSP01031 Mean Expected Number 0.007 -strand -184 : -191 AGAATCTT AC RSP01093 Mean Expected Number 0.001 -strand -95 : -105 TCTAAGCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: histone H2A, putative |LOCUS: AT3G20670 |PROD: the same as GENE |7229417..7230508 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.32 C - 0.24 1 gtatttccgt caatcccaat tctaacaatg aattcaggag tataaaaacg 51 taaattcaag cgtgccaatt ataaaccgtc gatcataatc taatccaacg 101 gcagtaacat cgatccgcgt gATTGTttat tattggataa gaatcactca 151 accgtctcta cacagTATAT ATAataacca aagagcgtcc tcttacgctt 201 ATCTTAATTT CCCTCGCATT GAGAATTTTC AACTTTTTCT ATCTCTCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.000 -strand -79 : -89 TCACGCGGATC AC RSP00837 Mean Expected Number 0.005 -strand -116 : -125 tGATCGACGG AC RSP00839 Mean Expected Number 0.001 -strand -82 : -89 CGCGGATC AC RSP00894 Mean Expected Number 0.007 +strand -148 : -141 AATTCAAG AC RSP01086 Mean Expected Number 0.005 -strand -147 : -156 TTTACGTTTt AC RSP01497 Mean Expected Number 0.002 -strand -99 : -108 GCCGTtGGAT AC RSP01604 Mean Expected Number 0.006 -strand -35 : -42 ACTGTGTA Totally 7 motifs of 7 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 1-deoxy-D-xylulose 5-phosphate synthase |LOCUS: AT3G21500 |PROD: the same as GENE |complement(7573643..7576579) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.36 C - 0.16 1 cgttgttaaa gagcgtaaac tttaataaga cgttaacatg tgtgtgaaca 51 gaaagctatt ctctaaaatt ttgatattaa atttgtacaa aatacatttc 101 tacgtggatt taaggtgtta aaagagttcg attagtaagc tttacatttt 151 attgatacta ccacTATATA TAcgttggaa tgtcatatca aacacagatt 201 AACAAATTCT CTCAAATGGC TCTCTCCGTA TTTGCCTTTC CTTCTTACAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.001 -strand -93 : -102 TCCACGTAGa AC RSP00280 Mean Expected Number 0.004 -strand -93 : -102 TCCACGTAGA AC RSP00597 Mean Expected Number 0.002 -strand +3 : -9 GTTAATcTGTGT AC RSP00885 Mean Expected Number 0.000 +strand +1 : +13 AACAAATTCTCTC AC RSP01259 Mean Expected Number 0.001 +strand -101 : -94 CTACGTGG AC RSP01469 Mean Expected Number 0.008 +strand -167 : -158 TaACATGTGT AC RSP01734 Mean Expected Number 0.005 -strand -93 : -99 TCCACGT Totally 7 motifs of 7 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 818. Group RE: AACA motif /AC: RSP00885//OS: Zea mays /GENE: gamma-27kDa zein/RE: AACA motif /TF: unknown 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: nitrate transporter (NTP3) |LOCUS: AT3G21670 |PROD: the same as GENE |complement(7626764..7629158) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.30 C - 0.23 1 taatggacat ggggaattac aaagaagcag aaaaccttgc aaccacatga 51 aataaacaaa tgtctttgtc ataagataat gaaatcacac tgttgtctca 101 atgtttgttt agatctatct gatcatatat cgctgaaaca accacacaaa 151 aagcaaagcc acattttaTA TAAAGAccca tcatatatca atcaatcccc 201 ATCTCTCTTC ACATGCCCAT TTGAATCGTA TCTCCTCTCA TTTCTTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.008 -strand -92 : -98 AACAAAC AC RSP00447 Mean Expected Number 0.007 +strand -49 : -40 AGCAAAGCcA Totally 2 motifs of 2 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peroxidase 30 (PER30) (P30) (PRXR9) |LOCUS: AT3G21770 |PROD: the same as GENE |7673283..7674846 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.35 C - 0.20 1 tctttaccat caacaaatta actaaaaatc acaaaactga cacacacaaa 51 aaaacacaac attttgttcg gctttttttt tcacttcctt tattgtttta 101 ttaaaaaaaa atttagttta gtttttacat aagttttata tttactttca 151 ccataatgaa caatcctctT ATAAATAgac cccttccatt attgctctat 201 ATCCTGTCTC TCTTCAGTGA CACAAACCCA AAGAAAAGTA GTGAGAAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01017 Mean Expected Number 0.010 +strand +44 : +51 AGAAACAA AC RSP01641 Mean Expected Number 0.005 +strand +2 : +11 TCcTGTCTCT AC RSP01687 Mean Expected Number 0.002 +strand -132 : -126 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: proline-rich family protein |LOCUS: AT3G22070 |PROD: the same as GENE |complement(7775336..7776116) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.10 T - 0.31 C - 0.14 1 attacctaat ttataaatta tttttgaaaa agtgtttact tttcctacaa 51 atctttaaaa ataattatat aaaagcacac aaactgtgaa aataaaggag 101 atgaaagaga gataatagag agattcattt catttttgta atctaaaaat 151 tcattcacaa caacTATAAA AAtaaaataa aacaaacatc caaaaaaaat 201 AGTCACAGAA TTTTGGTTTC CGATCTTCTG AATATCCACA ACAATGCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.010 -strand -135 : -147 AATTATTTTTAAA Totally 1 motifs of 1 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ELIP1 |LOCUS: AT3G22840 |PROD: |complement(8084471..8085567) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.33 C - 0.19 1 tgaacctttc aaatactata tgattcacgt gtaatgtttt tgaccgttgg 51 ttatttttgt gtgaactata ttaacttatc aatatcgaaa ggctaaataa 101 gtaaataact aaaagaaagt tcaggaaaca actcgaccta atgacctatc 151 atttctgatc acccgtccTA TAAATAcata cgtaagatca ttcgttactc 201 ATATCAAGCT TCTACACACG ATCTAGCTTA AAGTTCTGTA ACCTAAGCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.006 -strand -169 : -175 ACACGTG AC RSP00974 Mean Expected Number 0.001 -strand -168 : -177 TACACGTGaA AC RSP01296 Mean Expected Number 0.008 +strand -33 : -25 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -33 : -24 CTATAAATAC Totally 4 motifs of 4 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G22900 |PROD: the same as GENE |8115184..8116260 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +468 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.43 C - 0.22 1 ttgacttttg actacatctt tttctattta atcactcact tttttttttt 51 tttttttcgc catttaatca ctcacttttg acttcatata tgtattctag 101 tagtcgtacc caATTGTtgt aatgggcctt caaaggcctc ttgtagtaat 151 gggcctatta attTGTAAAT Aaccaaaccc gaagtttcgt ctcctgagtc 201 ATTTCACGAC TGATGTTTTT CTTCTCCGAC GCTACAATCG GTGTCTGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.009 +strand -6 : +1 TGAGTCA AC RSP00943 Mean Expected Number 0.006 +strand -2 : +9 TCATTTCACgA AC RSP01596 Mean Expected Number 0.006 -strand +9 : -2 TcGTGAAATGA Totally 3 motifs of 3 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L36a/L44 (RPL36aA) |LOCUS: AT3G23390 |PROD: the same as GENE |8375382..8376397 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.26 C - 0.19 1 gtcttgacga tttaattcaa aaagcaaaaa aatcaatagg aaacaaaaac 51 tcataaagga ctttgacata cagatgggcc cattgtttat gaccaatcct 101 tatactatat atgggcctta ttagttaaac ctaaggccca aagtcagatt 151 agggttttca gaaagtgtac TATAAATTct tcttctttaa acaacttcgt 201 CTAGTGGAAC GACGACGGCA CAAAAGCTTC ACCGGAGATC AGAGACGCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -52 : -44 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -44 : -52 AAACCCTAA AC RSP01303 Mean Expected Number 0.002 -strand -43 : -52 aAAACCCTAA AC RSP01757 Mean Expected Number 0.002 -strand -193 : -200 GTCAAGAC Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CYN |LOCUS: AT3G23490 |PROD: cyanate lyase family |complement(8423042..8424659) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +237 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.40 C - 0.14 1 catgctgcac ataatggtta tgaatatatt atgattaaaa gacaacacat 51 attgattgac ttttgattta tatatattac atctatgatc tatcttcatt 101 atataagata tcacgtttct ctcggttaca tatatatatt atgtttgatt 151 attgaatgaa TATAATTAta taagataact gtctctctgt ctgtctgtct 201 GTCTGTCTGA GTGGATTCGT ATACTATATT GTGATGAGAG TCACCACAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.006 -strand -75 : -81 ACCGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATIPT7 |LOCUS: AT3G23630 |PROD: |8488702..8490217 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +183 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.42 C - 0.17 1 tttgtttttc tttctgtttt ttttttgttg ttaagtttta gttgtggaat 51 ttcaaagggt ttaaccaact agtcttaatg aatttcctat agatggggca 101 tctaaaatct attttaataa ggtcgtagac caaagtcaga gaaaacacgg 151 ctagttagtt ctaggtgTAT ATATAtagcc tccttaatac ctcaaaactt 201 AATACTTGTG AGCATTTGCT TTCTTTCACC ATTCTCTCTT AGTCTTCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01237 Mean Expected Number 0.007 -strand -23 : -32 CTaTATATAT AC RSP01600 Mean Expected Number 0.008 +strand -151 : -144 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycine-rich RNA-binding protein, putative |LOCUS: AT3G23830 |PROD: the same as GENE |complement(8606484..8608062) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +378 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.34 C - 0.25 1 tctacatcag ctacattcta tatttgatac acttgcgctt ttccagtgtg 51 ttgacttctc tcattactca attctattgg acaactacgg tagtatacag 101 taatacgata cacctagcca caggtgatta gtttgagcaa aacaaaaatg 151 agagtttctg agctcagtaT ATAAATCcct taaaccctac tctttgtctt 201 CATCCTCTCA CTGCCTCTTT TCTCACTCAC TGTTACTTCG CTAAAACCCT 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: transferase family protein |LOCUS: AT3G23840 |PROD: the same as GENE |8611133..8612697 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.27 C - 0.19 1 caggtgacgc aaacacctat tgtctctatg ataatattat gcataacaac 51 gtgaatgaat taatacaatc acaatctata aagcaagggt gaaagagaga 101 aagacacgta gccgaacatt aacaaatttg aaagaataaa aactcttaag 151 aacacaaaaa tatttcTATA TATAtcctac atagctaaga ccgaaatatc 201 ACTCAGAATC ATCTTTGTCA ATATTTCTCT ACCATCTTTT GTCTCATAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.009 +strand -191 : -184 CAAACACC AC RSP00068 Mean Expected Number 0.005 +strand -98 : -89 GACACGTAGc AC RSP00070 Mean Expected Number 0.003 -strand -91 : -98 TACGTGTC AC RSP00163 Mean Expected Number 0.001 +strand -185 : -175 CCTaTTGTCTC AC RSP00163 Mean Expected Number 0.001 +strand +35 : +45 tCTTTTGTCTC AC RSP00204 Mean Expected Number 0.001 +strand -98 : -89 GACACGTaGC AC RSP00970 Mean Expected Number 0.000 +strand -197 : -189 GTGACGCAA AC RSP01035 Mean Expected Number 0.007 -strand -92 : -98 ACGTGTC AC RSP01260 Mean Expected Number 0.003 -strand -90 : -97 CTACGTGT AC RSP01636 Mean Expected Number 0.002 +strand -125 : -115 CTATAAAGCAA AC RSP01641 Mean Expected Number 0.002 +strand -183 : -174 TATTGTCTCT Totally 11 motifs of 10 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 893. Group TF: STF1; STF2; STGA1 /AC: RSP00970//OS: Glycine max /GENE: Auxin-regulated genes/RE: CRE (G/A) /TF: STF1; STF2; STGA1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: myb family transcription factor |LOCUS: AT3G24120 |PROD: the same as GENE |complement(8705643..8708322) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +167 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.34 C - 0.15 1 atataagcaa gaaaaagggt ctaaatagtt taatattgtt ggtgtaataa 51 tttagattag agcaatcaaa tgtctaaata ttataaaatt gttgattata 101 ttattactaa tagtttaatt aaagtacctc tgctacaaat aattaaatgg 151 gatttgatTA TAAACAtgtt ccttctatgt ttaaacgcaa atcggagcct 201 AATACGTCCA AACTATATCC ACCCGTCTCT TCGCTGTCCA TAAATCCGGA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ethylene-responsive transcriptional coactivator |LOCUS: AT3G24500 |PROD: the same as GENE |8918686..8919315 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.27 C - 0.22 1 accattgagc caaatcggat aatatggtgt accacgaatc caacccaaaa 51 agcattggtt aactgcaaat cagataatga cacgtcgtca atcatctcta 101 agaacgttcc agagacgaaa atggagaaaa agatgatcga attctccaga 151 aaccaatctt cgtataTATA AATAtcacaa tcctctcaac aacattcttc 201 ATCTTCATCG TTTCTCAATT TCAAAACTCA GATTAATAAA ATTTTCGCGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.004 -strand -115 : -124 GACgTGTCAT AC RSP01013 Mean Expected Number 0.006 +strand -83 : -74 aAAATGGAGA AC RSP01035 Mean Expected Number 0.008 -strand -116 : -122 ACGTGTC AC RSP01692 Mean Expected Number 0.004 -strand -60 : -67 TTCGATCA Totally 4 motifs of 4 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PRT1 |LOCUS: AT3G24800 |PROD: PRT1 protein (PRT1), E3 |9055516..9058005 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +144 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.29 C - 0.16 1 gaactcgatt acccaaatat ctacccttat atggcatggc atgaaacatc 51 atctctcaag aatatagtaa tgccatgaag gaaaattggc aaataaaaat 101 ataaaatata catgaaattc ttttttttta aaagttttgt ttttgcttat 151 agtaataaac TATAAATTaa tttataatta gaaaaaagaa agaagaaggt 201 ACGGCGGTGG ATATTGGCCC TTGCCGCAAA AGCAAAAGCT ATCGCCACCA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L13A (RPL13aB) |LOCUS: AT3G24830 |PROD: the same as GENE |9064570..9066089 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.24 T - 0.24 C - 0.17 1 tcattgctga tcctgtgaag aagaagaaga atctgaaaat ctccaatgcc 51 ttagaaagta gaaaaaatgg gcctgggcat ggcctgttac tgggctactg 101 ggccttatta taataacaaa aggcCCAATa aattagggtt tagagaactc 151 ttaaccctaa tgtcgcatca taTATAAAGT cgccattgaa gtgaagctga 201 GATCTTTTCG AAGAGCGGAA GCTAAGGAGA GGCGAATTCG AATCGAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -68 : -60 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -60 : -68 AAACCCTAA AC RSP01004 Mean Expected Number 0.008 -strand -9 : -18 ACTTcAATGG AC RSP01237 Mean Expected Number 0.009 -strand -22 : -31 CTtTATATAT AC RSP01303 Mean Expected Number 0.003 +strand -50 : -41 TtAACCCTAA AC RSP01303 Mean Expected Number 0.003 -strand -59 : -68 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -50 : -41 TtAACCCTAA AC RSP01304 Mean Expected Number 0.003 -strand -59 : -68 TaAACCCTAA Totally 8 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT3G25710 |PROD: the same as GENE |9370756..9372631 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.38 C - 0.15 1 tatatggaac taagttcata cgttatttct cacaattctc cttgatgtga 51 tcaaagataa tggcggtctg attgtataac ccggtgaaaa aggttttttg 101 gaaagaattc tttaatatta aaatatcaaa taaattttgt ttaaaaatta 151 aggacacatt atatagcacT ATATATAcac atgtgtatgc attatcaaat 201 GGGATGTTTG TGACCTTTTG TCTCTTCTTC TCTAAAATTC TCTTTCTCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.002 +strand +14 : +24 CCTTTTGTCTC AC RSP00861 Mean Expected Number 0.003 -strand +47 : +39 AGAAAGAGA AC RSP01469 Mean Expected Number 0.009 +strand -24 : -15 aCACATGTGT AC RSP01469 Mean Expected Number 0.006 -strand -15 : -24 aCACATGTGT AC RSP01641 Mean Expected Number 0.007 +strand +16 : +25 TtTTGTCTCT Totally 5 motifs of 4 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AP2 domain-containing transcription factor |LOCUS: AT3G25730 |PROD: the same as GENE |9397657..9398896 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.06 T - 0.34 C - 0.26 1 tttaagttga cccacaacat atacacacac aaacccatat tattccgata 51 cacctaccca tatattatac catctcctta aaacacacta caagtaataa 101 aaaggacgga actttttttt ttaataacat acatgcacac ttgatgtttc 151 ttatttcccc ttgtctctcT ATATATAcac acattcattc acacacgttc 201 ACACATATAC ATTCACATTA CTAATCTCTC AAGATTTCAC AATTTTCTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00019 Mean Expected Number 0.006 -strand -126 : -137 AGATGGTATAaT AC RSP00284 Mean Expected Number 0.000 -strand -92 : -97 CCGTCC AC RSP00778 Mean Expected Number 0.010 -strand -10 : -19 TGAATGAATG AC RSP01016 Mean Expected Number 0.006 -strand -50 : -57 AGAAACAT AC RSP01079 Mean Expected Number 0.003 +strand -153 : -142 ATaCACCTACCC AC RSP01237 Mean Expected Number 0.003 +strand -34 : -25 CTCTATATAT AC RSP01641 Mean Expected Number 0.006 +strand -42 : -33 cCTTGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 18. Group TF: GT-1 /AC: RSP00019//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box5 /TF: GT-1 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 997. Group TF: DcMYB1 /AC: RSP01079//OS: Daucus carota /GENE: DcPAL1/RE: box-L1 /TF: DcMYB1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: myb family transcription factor |LOCUS: AT3G25790 |PROD: the same as GENE |9414364..9416240 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.17 1 tggatcaata ctactataca acaagggaaa aaaaaatatt taacttggga 51 aggtatatac ttattttata aacaaaagca agattcgcct tgtaatgcga 101 cggcccgact tctctctttc aaataatgat ccttgagaaa ccctatagag 151 ccatatatac gttgtcttTA TAAAGAgaca taactcatct cttcttgact 201 AACTTTATAG TTAAAGTTAT CAATTATTCG AAAACAAAGC TGGTTTTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00838 Mean Expected Number 0.008 -strand -98 : -103 CCGTCG AC RSP01497 Mean Expected Number 0.001 -strand -97 : -106 GCCGTCGcAT AC RSP01640 Mean Expected Number 0.005 -strand -18 : -27 tTATGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: universal stress protein (USP) family protein |LOCUS: AT3G25930 |PROD: the same as GENE |complement(9494082..9495154) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.30 C - 0.16 1 ccactacaca cgggtttaat atagtattac ttgtgtgtat aattttattt 51 tattttgcaa acgagaagaa gccagaatca agtcgttaac ccatgccttT 101 CAATtaccca atcacctaag attttttttt atattacttc ctttgacaag 151 ttaatccact tccaaatata cTATAAAGTt gcacattgac aagaggtttt 201 AGCAGAAGCT AGAAGAAGAA AGGAGAAGAA GAAACAAAGA GAGAAGATGA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: major latex protein-related / MLP-related |LOCUS: AT3G26450 |PROD: the same as GENE |complement(9682535..9684605) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.30 C - 0.14 1 ttatcaaata aagaaaataa atttctatga cccaataatg taatgctcta 51 atattttatt ttataatttg taaaattaat gctcactaaa tactttaggt 101 tgaaaaatga agaagagaag tttctagcat gattaaaaga aacagtattc 151 ttaagcgtca tcttctctaT ATAAACCaag gcaacaagtg ttatttcatc 201 AACCAAAACA AAACAAAAGA AGAAACACGA GTGGAAGCTT TTAAACAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01030 Mean Expected Number 0.006 -strand -76 : -83 AGAAACTT AC RSP01678 Mean Expected Number 0.007 -strand -140 : -151 aAATAAAATATT Totally 2 motifs of 2 different REs have been found Description of REs found 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: major latex protein-related / MLP-related |LOCUS: AT3G26460 |PROD: the same as GENE |complement(9685110..9685894) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.27 C - 0.16 1 ttatcttgta aaggatgatg gaccaactat acacattaat aacgtggtcg 51 cggattcgtt taccaaatca agaaaataca tttctatgat ccactaatgc 101 tcttatattt tattttaatg attaaaagaa acggtagaaa ccatatttga 151 aagcgtcagc ttctgatcta TATAAACCaa caagtgttat ttcagcaacc 201 AAAACAAAAA CACGAGTGGA AACTTTTAAA CAAGAGAGGG AGAGAGCGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00253 Mean Expected Number 0.001 -strand -145 : -152 AATCCGCG AC RSP00559 Mean Expected Number 0.004 +strand -16 : -6 TGTtATTTCAG AC RSP01058 Mean Expected Number 0.005 -strand -105 : -112 TAGTGGAT Totally 3 motifs of 3 different REs have been found Description of REs found 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: light responsive protein-related |LOCUS: AT3G26740 |PROD: the same as GENE |9829039..9829917 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.36 C - 0.18 1 ccttttgttc aaacttttat cttctttgtc atagaaagtt tggaccactg 51 attttagtcc gttggattat caattattga cctcaataat atcaaaattt 101 acttcaatga gaataagatt ACAATttttt attttttttt gaacaccaac 151 aaatctgctt cttctctggc TATAAATAaa gcataaactg ttccaaaaac 201 AGAACCAAAA AATATCTAAA ATCACTAAAC CTATCTTCTT AACCAAAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00288 Mean Expected Number 0.009 -strand -154 : -159 TGGTCC AC RSP01060 Mean Expected Number 0.007 +strand -130 : -122 CAATTATTG AC RSP01060 Mean Expected Number 0.007 -strand -122 : -130 CAATAATTG AC RSP01077 Mean Expected Number 0.003 -strand -122 : -130 CAATAATTG AC RSP01209 Mean Expected Number 0.007 -strand +2 : -8 CTGTTTTTGG AC RSP01231 Mean Expected Number 0.009 +strand -142 : -137 CCGTTG Totally 6 motifs of 5 different REs have been found Description of REs found 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G26960 |PROD: the same as GENE |complement(9945905..9946816) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.37 C - 0.21 1 atcttcactc caaatgcacc tttctttgta ctcccatcac tttctcttcg 51 atatggtatt tactttaatc cgattcgaat attgtaacta tgaaaaacaa 101 aatgaatagt aaaaatatcc gtttcgtatc caagcctatt tttaaaagac 151 acgtttgtat aactctctcT ATATATAgaa aggaaccacg aagctctttc 201 AAGAGAGTTC TATTCTTGTC TGAAAACTAG TTCCCTATAT TTCTTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand -35 : -20 TcTCTATATATAGAAA AC RSP00085 Mean Expected Number 0.006 -strand -20 : -35 TTTCTATATATAGAgA AC RSP00332 Mean Expected Number 0.005 +strand -148 : -141 ATGGTATT AC RSP00405 Mean Expected Number 0.008 -strand -187 : -194 TTTGGAGT AC RSP00862 Mean Expected Number 0.000 +strand -24 : -16 AGAAAGGAA AC RSP01035 Mean Expected Number 0.005 -strand -47 : -53 ACGTGTC AC RSP01039 Mean Expected Number 0.010 +strand -23 : -18 GAAAGG AC RSP01237 Mean Expected Number 0.002 +strand -34 : -25 CTCTATATAT AC RSP01237 Mean Expected Number 0.008 -strand -21 : -30 tTCTATATAT AC RSP01679 Mean Expected Number 0.000 -strand -45 : -56 AAACGTGtCTTT Totally 10 motifs of 8 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1497. Group RE: JRE (Qualt. Seq.) /AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Qualt. Seq.) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AIG2 |LOCUS: AT3G28930 |PROD: avrRpt2-induced AIG2 protein (AIG2) |complement(10960944..10961991) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.49 G - 0.11 T - 0.21 C - 0.20 1 caaaaatata atatcaaaaa tctaaaacga aaatctaaaa tctataaact 51 aaaatctaaa tccaaaaact gaatcgaaat acagcatcca ttcagggcct 101 ttataacaaa aagCCAATga gaaaagtctg aaggaagaga atcgtcaaca 151 aacgatggct atacaacaag AATAAATAca tcacattttt cagacaaact 201 CCAATTTCAC AGTGAAAATA AAAACAATGA CAAGCTCCGA TCAATCTCCA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: UDP-glucose 6-dehydrogenase, putative |LOCUS: AT3G29360 |PROD: the same as GENE |complement(11268328..11270465) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +411 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.32 C - 0.23 1 cacagtaatt actcgatttt tttataaccc tcatttcttg gaaagtgaga 51 ataataatgc cagatgtaaa atgtaatgaa cagtggctcc accatcaccg 101 aacctgcagg ttcgcttttt tttaagtctc tctctggtcg gtcaggggca 151 aaatcggaaa tctacttgtT ATAAAACgaa actttggtct taagatcatc 201 ATCATTGTCC CTCAGACAAA TTTCACTCGC TCATCTCTGT CTGAATCTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand -66 : -74 AGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: histone H2B |LOCUS: AT3G45980 |PROD: the same as GENE |complement(16907801..16908998) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.29 C - 0.25 1 aacggagatt ttaacaccgc gctaaaacat aaaccaatat tgacacgtca 51 tcgatcccgc ttcataagtt tataaaccgt cgattaaaaa caatttcaac 101 ggttgcgatc tcccatctca tcgatcctcg tcaacatcta ataaCCAATc 151 atatcaatta ttctaactac TATAAAATca aaactcgtct tcatcaaatt 201 AGATATCAAA ATCACTCAGA TCTGTGCTTC TTCTTCTTCA CCCAGAAAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.008 +strand -156 : -147 ACGTCATcGA AC RSP00400 Mean Expected Number 0.005 +strand -101 : -96 CGGTTG AC RSP00459 Mean Expected Number 0.007 -strand -67 : -76 TTGACgAGGA AC RSP00460 Mean Expected Number 0.004 +strand -159 : -150 GACAcGTCAT AC RSP00913 Mean Expected Number 0.006 -strand -79 : -88 GATGAGATGG AC RSP00916 Mean Expected Number 0.006 -strand -149 : -158 GATGACGTGT AC RSP00997 Mean Expected Number 0.008 -strand -149 : -158 GATGACGTGT AC RSP01035 Mean Expected Number 0.006 -strand -153 : -159 ACGTGTC AC RSP01065 Mean Expected Number 0.002 -strand -73 : -83 AGGATCGATGA AC RSP01065 Mean Expected Number 0.002 -strand -143 : -153 gGGATCGATGA AC RSP01258 Mean Expected Number 0.005 -strand -151 : -158 TGACGTGT AC RSP01654 Mean Expected Number 0.009 -strand -149 : -158 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 -strand -149 : -160 GATGACGTGTCA Totally 13 motifs of 12 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: histone H2B, putative |LOCUS: AT3G46030 |PROD: the same as GENE |complement(16924433..16925116) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.29 C - 0.22 1 cgaaattaat tttgattcgc tgcttaatgg cccatttaaa aaggtgagag 51 atgcttagcc gttcactgcc aacgacggat ttattctaat ctaacggtac 101 gtaatatatt ccacgtcaTC AATcctcgtg aaacgagaat taaccaatct 151 gtatctaatt catggtcaTA TATATAcatg agctaccgaa tcgtctaaac 201 AACAAACACA AAACTTGATC TCACGACTCC ATCTTCTAAA ATTCAGAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.003 -strand -83 : -90 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -90 : -83 CCACGTCA AC RSP00847 Mean Expected Number 0.009 +strand -90 : -81 CCACgTCATC AC RSP00913 Mean Expected Number 0.004 -strand -81 : -90 GATGACGTGG AC RSP00915 Mean Expected Number 0.006 -strand -81 : -90 GATGACGTGG AC RSP00916 Mean Expected Number 0.004 -strand -81 : -90 GATGACGTGG AC RSP00997 Mean Expected Number 0.005 -strand -81 : -90 GATGACGTGG AC RSP01065 Mean Expected Number 0.001 -strand -75 : -85 AGGATtGATGA AC RSP01275 Mean Expected Number 0.005 +strand -91 : -82 TCCACGTCAT Totally 9 motifs of 9 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: histone H4 |LOCUS: AT3G46320 |PROD: the same as GENE |complement(17030897..17031413) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.30 C - 0.22 1 aaattttcat aaactttcac ttacaggcat cacggggatc gacaatatta 51 agcgtcgata aaattaaatc aacggctaat aagtaatctc attgttcacc 101 cggatcgtta tctgcaaccg ttagatctaa aaacacatct gacggttcaa 151 atcaattaga tccatcttgt aTATAAATGa catctcctct taacaagatt 201 CTCAAATCAT CTCAATCTCA ATTAAATCTT CAAATCGAAA AGTTTCCGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.001 +strand -171 : -161 TCACGgGGATC AC RSP00272 Mean Expected Number 0.001 +strand -105 : -95 TCACcCGGATC AC RSP00460 Mean Expected Number 0.004 -strand -15 : -24 GAgATGTCAT AC RSP00701 Mean Expected Number 0.001 +strand -102 : -95 CCCGGATC AC RSP01031 Mean Expected Number 0.008 -strand +2 : -6 AGAATCTT AC RSP01068 Mean Expected Number 0.008 +strand -63 : -55 TCTGACGGT AC RSP01469 Mean Expected Number 0.009 -strand -59 : -68 TCAgATGTGT AC RSP01601 Mean Expected Number 0.010 +strand -186 : -179 TTTCACTT AC RSP01602 Mean Expected Number 0.009 +strand +10 : +17 TCTCAATC AC RSP01735 Mean Expected Number 0.002 +strand -5 : +4 AGATTCTCA Totally 10 motifs of 9 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 667. Group RE: Oct (d) /AC: RSP00701//OS: Triticum aestivum /GENE: H3/RE: Oct (d) /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: TOPP5 |LOCUS: AT3G46820 |PROD: |complement(17252768..17255262) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +285 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.37 C - 0.09 1 tataaagaaa atctatacaa attaaccatg aattctatat aaaccttttt 51 ttgtgaatat atttatgaag tttgtgaata tttaatattt ttttgtttga 101 cctaataata acagcagaaa tcgacgtcga tacgaaaata tatatatata 151 taTATATATA tatatatata tatatatatg aaaaaaatga aaatgtgtca 201 TTTATCTAAA ACGAAAAAAA AGAAAAGAAG AGAAGCTTTT TTAGTTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00071 Mean Expected Number 0.004 +strand -78 : -73 GACGTC AC RSP00071 Mean Expected Number 0.004 -strand -73 : -78 GACGTC AC RSP00148 Mean Expected Number 0.010 +strand -79 : -75 CGACG AC RSP00148 Mean Expected Number 0.008 -strand -72 : -76 CGACG AC RSP00171 Mean Expected Number 0.008 -strand +51 : +46 GAGAGA AC RSP00383 Mean Expected Number 0.004 -strand -99 : -105 GGTCAAA AC RSP00492 Mean Expected Number 0.000 +strand -71 : -30 ATAcgaAaATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -69 : -28 AcgaAaATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -67 : -26 gaAaATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -65 : -24 AaATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -63 : -22 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -61 : -20 ATATATATATATATATATATATATATATATATATATATATga AC RSP00492 Mean Expected Number 0.000 +strand -59 : -18 ATATATATATATATATATATATATATATATATATATATgaAa AC RSP00492 Mean Expected Number 0.000 +strand -57 : -16 ATATATATATATATATATATATATATATATATATATgaAaAa AC RSP00492 Mean Expected Number 0.000 -strand -16 : -57 tTtTtcATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -18 : -59 tTtcATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -20 : -61 tcATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -22 : -63 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -24 : -65 ATATATATATATATATATATATATATATATATATATATATtT AC RSP00492 Mean Expected Number 0.000 -strand -26 : -67 ATATATATATATATATATATATATATATATATATATATtTtc AC RSP00492 Mean Expected Number 0.000 -strand -28 : -69 ATATATATATATATATATATATATATATATATATATtTtcgT AC RSP00492 Mean Expected Number 0.000 -strand -30 : -71 ATATATATATATATATATATATATATATATATATtTtcgTAT AC RSP00597 Mean Expected Number 0.003 -strand -175 : -186 GTTAATTTGTaT AC RSP01033 Mean Expected Number 0.001 +strand -157 : -148 CCTTTTTTTG AC RSP01598 Mean Expected Number 0.007 +strand -5 : +3 TGTCATTT Totally 25 motifs of 8 different REs have been found Description of REs found 70. Group RE: C-box /Group TF: RITA-1 /AC: RSP00071//OS: Oryza sativa /GENE: rifa-7-P-glucuronidase transgene/RE: C-box /TF: RITA-1 144. Group RE: CGACG-element /AC: RSP00148//OS: Oryza sativa /GENE: Amy3D/RE: CGACG-element /TF: unknown 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 468. Group RE: Zc2 A/T-2 /AC: RSP00492//OS: Zea mays /GENE: Zc2/RE: Zc2 A/T-2 /TF: unknown 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: aldose 1-epimerase family protein |LOCUS: AT3G47800 |PROD: the same as GENE |17645795..17648595 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +161 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.09 T - 0.32 C - 0.13 1 tagaatagaa aaattcaaaa tatacacctt aaatttcatg tttctaccca 51 caaaaaaaaa gaatgtagaa cattcaaaaa cttatttttt tgtatatttc 101 tgttaaaaaa caactgtaat atgaaaagtc ctaaaataaa aggtcaagac 151 taaaaatatc tTATAAAAAt ctaaaattac aaaacaagga aaatttgttt 201 ATCAAAGTTT GGGATAATAG TCTTATCTCT TTCATCCACA CTAATATAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.004 -strand -96 : -103 TAACAGAA AC RSP00440 Mean Expected Number 0.000 -strand -70 : -78 GGACTTTTC AC RSP00559 Mean Expected Number 0.009 -strand -20 : -30 TGTAATTTtAG AC RSP00620 Mean Expected Number 0.000 -strand +29 : +13 GAGATAAGACTATTaTC AC RSP01016 Mean Expected Number 0.004 -strand -156 : -163 AGAAACAT AC RSP01757 Mean Expected Number 0.001 +strand -58 : -51 GTCAAGAC Totally 6 motifs of 6 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 596. Group RE: 2 CC /AC: RSP00620//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: 2 CC /TF: unknown 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G48510 |PROD: the same as GENE |complement(17978341..17979523) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.25 C - 0.26 1 tgggagaata acttaggcaa aaaaacaaaa agagagaata actttccatg 51 tgcaacccaa accctttact actgtcttct agacccaaca caaccacaag 101 cgtgcaggca aagacacgtg tccatgtcac aactagtata gactccaaca 151 cgtgtccaga tcacagacgt TATAAAACcc ttaccatttc tgttcagtgt 201 ATTCCTCAGC TCAAGTAAAG CTTTTACCTA ATTCTCAAAC ATTCTTTACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 +strand -88 : -79 GACaCGTGTC AC RSP00143 Mean Expected Number 0.004 -strand -79 : -88 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -88 : -79 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -79 : -88 GACACGTGtC AC RSP00442 Mean Expected Number 0.007 +strand -162 : -153 TAACTTTcCA AC RSP00524 Mean Expected Number 0.007 -strand -46 : -52 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -80 : -86 ACACGTG AC RSP01035 Mean Expected Number 0.007 +strand -85 : -79 ACGTGTC AC RSP01035 Mean Expected Number 0.007 +strand -51 : -45 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -87 : -80 ACACGTGT AC RSP01256 Mean Expected Number 0.002 +strand -53 : -46 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -46 : -53 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -80 : -87 ACACGTGT Totally 13 motifs of 6 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G48550 |PROD: the same as GENE |18004984..18005677 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.25 C - 0.16 1 gacaacaaat tcacataatg gcggtacggt ggtcgtttgt taactttgag 51 gattatataa aaacccaatg atcaaataac ccaaaaagat atgcatattc 101 gaataagggg ttataagtgt aatttcaagt agatagtata tgtgcacaga 151 cacgaagcag cttacaTATA AAGTgattgg taattgccat ccccacactt 201 ATTGAGAAGT GCAGCCTTTT AGCCAAAAAA AACAAACAAG AATACAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.008 -strand -160 : -166 AACAAAC AC RSP00231 Mean Expected Number 0.009 -strand -21 : -27 CCAATCA AC RSP00559 Mean Expected Number 0.003 +strand -83 : -73 TGTAATTTCAa AC RSP00760 Mean Expected Number 0.000 +strand -188 : -143 ACATAAT-- ** bp --ATTATAT Totally 4 motifs of 4 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 722. Group RE: motif III /AC: RSP00760//OS: Solanum tuberosum /GENE: S2-RNase/RE: motif III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein transport protein SEC61 gamma subunit |LOCUS: AT3G48570 |PROD: the same as GENE |complement(18014898..18015959) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.27 C - 0.17 1 acatcactca attataattc ttaagatgtt gtagaaaaat attttataga 51 tggaaagtaa tcgatattaa gacaaataag aaaccaaacc ggactttgtg 101 ttcagaccga atcaaatctg aATTGGagaa attatggtgg aggcgaaagt 151 caacggaact aaagTATAAA ACcaaatgtc aaaaataaaa cccaattttc 201 ATCCTTAAAC GAACCTGCTG AAACCCTAAT TTCGATTACC AATTCCGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand +29 : +21 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +21 : +29 AAACCCTAA AC RSP01303 Mean Expected Number 0.007 +strand +20 : +29 gAAACCCTAA AC RSP01678 Mean Expected Number 0.003 -strand -152 : -163 CtATAAAATATT Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: copper-binding family protein |LOCUS: AT3G48970 |PROD: the same as GENE |complement(18163273..18164360) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.11 T - 0.34 C - 0.23 1 acactcacac cttttttgtt actatttcac gcgtgctatg ctcttccttt 51 gtctccctat ttcacaaccc aagaaccctt tccataataa cttatactat 101 cataaaatat gaaaatacta atcaaaatat tagtagtatt tattcacaca 151 catatacata atcgaccTAT ATATAtagac acacacactt aggagacttt 201 GTGCACTGCT TCATTCTCTA TAACCAAGTA TAAGCTTGGA GGGGGTTATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01105 Mean Expected Number 0.001 -strand +45 : +40 CCCCCT AC RSP01237 Mean Expected Number 0.008 -strand -21 : -30 gTCTATATAT AC RSP01237 Mean Expected Number 0.008 -strand -23 : -32 CTaTATATAT Totally 3 motifs of 2 different REs have been found Description of REs found 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AMP-dependent synthetase and ligase family protein |LOCUS: AT3G48990 |PROD: the same as GENE |complement(18169732..18172334) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.34 C - 0.24 1 taatcgtaag gatatatatc agcgactccc accgttaaca aaataattaa 51 aaatgaaaac attatgacca cacgatcaat agaaaatccg ctacgatgat 101 aacacgtggc atcatctttt agccattttt tgcttccaca gatactgtag 151 taattgaata taaattTATA AATAtcgcat ttgctctctt ctctgctttc 201 ACATTCTCTC CTTCCTCATC ATCGTTACTC TCGTGTTTAT CTCTCCGACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -99 : -91 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -98 : -91 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -100 : -91 aACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -101 : -90 TaACACGTGGCA AC RSP00524 Mean Expected Number 0.006 +strand -99 : -93 ACACGTG AC RSP00709 Mean Expected Number 0.008 -strand -152 : -160 TAATTATTT AC RSP00819 Mean Expected Number 0.001 -strand -91 : -100 GCCACGTgTT AC RSP00915 Mean Expected Number 0.008 -strand +23 : +14 GATGATGAGG AC RSP00936 Mean Expected Number 0.000 -strand -90 : -101 TGCCACGTGTtA AC RSP01034 Mean Expected Number 0.002 +strand -97 : -91 ACGTGGC AC RSP01255 Mean Expected Number 0.001 +strand -99 : -92 ACACGTGG AC RSP01458 Mean Expected Number 0.003 -strand -28 : -40 ATTTAtAAATTTA AC RSP01463 Mean Expected Number 0.002 -strand -28 : -40 ATTTATAaATTTA AC RSP01593 Mean Expected Number 0.000 +strand -100 : -89 aACACGTGGCAT Totally 14 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: proline-rich family protein |LOCUS: AT3G49300 |PROD: the same as GENE |complement(18287802..18288590) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.29 C - 0.16 1 tgatattttt tggaaactaa ttactaattt gatgaattat aaatatgttt 51 aaaaataaaa tcgccaaaag atttagtttg aattgtagta aatgcgaaat 101 gcatgtgTCA ATatcatcaa tctgccaaca catttttcca ccaaaacgta 151 actacatgta cacaTATATA TAtagaagcg tgagtccaaa caacaaaact 201 AAAACAAACA AAAAAATGCT TTCAAAGATA AAGCCGGTGG TTCTCATGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.008 +strand -15 : -6 CCAAaCAACA AC RSP01600 Mean Expected Number 0.009 +strand +20 : +27 TTTCAAAG AC RSP01687 Mean Expected Number 0.008 -strand +36 : +30 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G49720 |PROD: the same as GENE |complement(18450988..18453182) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +542 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.23 T - 0.32 C - 0.16 1 tttttttgta ccacggaatc agagaagtgc gtgtcgtttt gaaacttgta 51 cgtgtgtaaa aaacggcaag aagtttgttg gtattctgat taataaatgg 101 acttaaaacg ctgtcgtttt cgtaacagcg cgtcatagac tcgtagccat 151 acgcgctttg tagaggcagg TATAAATAag tagatagcga tattgaagca 201 GTGATATTAA CACTTCGAAG CTTCTTCTTC CTTTAGTAAA TTCAAGTGTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -82 : -95 AAACGACAgCGTTT AC RSP00232 Mean Expected Number 0.008 +strand -71 : -62 gCGTCATAGA AC RSP00654 Mean Expected Number 0.009 -strand -168 : -177 CACgCACTTC AC RSP00894 Mean Expected Number 0.007 +strand +39 : +46 AATTCAAG AC RSP01185 Mean Expected Number 0.003 -strand -120 : -131 CCAACAAACTtC Totally 5 motifs of 5 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: bZIP transcription factor family protein |LOCUS: AT3G49760 |PROD: the same as GENE |complement(18466333..18467109) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.34 C - 0.22 1 tcatttcctc atcttttggt ctttctcttt tcattcttag aaaaagaaaa 51 tttgaaaaaa agataaaaag aaaaagaaaa gtaaatctaa aaagttatta 101 ggaaaaaccc ccaTCAATat tctactaatg tctgaccaaa atagcctcat 151 gtgtgtattc tctcgtcCAT AAATAtggac ctccaacaat gcaattcttc 201 CCTTTTCCCC TTCTAATCTC TCTCGCATCT CTACATTTTG AGATCATTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 +strand -145 : -136 AAAAAAGAtA AC RSP00473 Mean Expected Number 0.000 +strand -53 : -41 CATGTGTGTaTTC AC RSP01499 Mean Expected Number 0.006 +strand +5 : +14 TTCCCCtTCT AC RSP01686 Mean Expected Number 0.010 -strand -46 : -51 CACACA Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 451. Group TF: Alfin1 /AC: RSP00473//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS3 /TF: Alfin1 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATPSK3 |LOCUS: AT3G49780 |PROD: phytosulfokines 3 (PSK3) |18476664..18477361 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.39 C - 0.22 1 ttatataatt attactaact aacataaaac tataattcaa taattaaaat 51 ttgagcgata tatatgactc gttttatgac gccataaagg tagttaactt 101 taccctttat aagtttctat ggttcacatt tggcagcatc tcgctatttg 151 tcaactcgtg tatcacTATA AATTcaccta actggcttca tctgctattc 201 ATCCTCACAT CTTATAATTC TCTATCTCTC TTCTCAGGCT CCCATTATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01205 Mean Expected Number 0.010 +strand -97 : -88 CCTTTaTAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G49940 |PROD: the same as GENE |18525328..18526460 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.40 C - 0.19 1 taaattaaat tcagttaatg ataaaataaa tatattttgt agcaatcatt 51 ctattttgta atttggtagg gctctttaaa ctttgattat tatccaattt 101 ttattaaaat ataataaaat ctcaaagcca tgacccattc cttcactcaa 151 gtatcaatgt ctattgtcTA TAAATAttac ataactcttc ttcttcaacc 201 AAACATTGAA ACACTTTGTC CCACTCTCTC TCTTTCTCTT TCTTGTACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.007 +strand -148 : -137 ATTTTGTAATTt AC RSP00861 Mean Expected Number 0.007 -strand +43 : +35 AGAAAGAGA AC RSP00861 Mean Expected Number 0.007 -strand +37 : +29 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +33 : +25 AGAGAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G50560 |PROD: the same as GENE |complement(18772069..18774994) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.34 C - 0.16 1 ctttcaccta gaacacatat attatatata tatagaatat taataattcg 51 ataaaggtat acgtatactt atgcaaattg ttacatcatt gcaatgttaa 101 aattatataA TTGCtatcaa aggaaatgaa acttttctga tataatgaca 151 aagaaaggtg tgtatatatg TATATATAac aaccaaaaat ttatctagtc 201 CACAAGAATA TTTCTCTCTC TCACTCTCTC AACACAATCT TATTAAAGGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +21 : +13 AGAGAGAGA AC RSP01094 Mean Expected Number 0.005 +strand -157 : -146 TAATTcGATAAA AC RSP01283 Mean Expected Number 0.000 -strand +28 : +12 GAGAGtGAGAGAGAGAA Totally 3 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MNP |LOCUS: AT3G50870 |PROD: zinc finger (GATA type) family protein |18921971..18923589 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.35 C - 0.19 1 gtattttgta attaataaaa cataaaaaag caaggaaaac ccatttgagt 51 aaatgatata ttaatattac ttcgtaaaaa gctgcgtccc cacatattct 101 ATTGAtttta aatactattc gtattaatat aaacctgcat ataagcgtac 151 atatacattt ctgattcTAT ATATAggtgt gagaccttct tctccattct 201 ACACTTCACT CCAACGTGAA ACCTGCAAAC TGAACTTATC TCTTCATATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.006 +strand -198 : -187 ATTTTGTAATTA Totally 1 motifs of 1 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LTP12 |LOCUS: AT3G51590 |PROD: lipid transfer protein, putative |complement(19146644..19147654) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.29 C - 0.18 1 gtaacaactt cttgaaactc aattaagcga tagggaatgc aacgtattta 51 ctttggaata tgtgtatttt aatcttaatt caacaaaaaa aataaaattt 101 tcattaaatt tgcatgcata tggaactaag cataattaac gggtacgcat 151 gaccttcatg agtgtttcca atTATAAAAT ccctaccgac ctcaacaaag 201 TAAAAGCAAT AAAAAACAAA AATGGCGTTT ACTCCGAAGA TCATCACATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.008 -strand -85 : -91 CATGCAA AC RSP00550 Mean Expected Number 0.001 +strand -147 : -137 TGGAaTATGTG Totally 2 motifs of 2 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G51660 |PROD: the same as GENE |complement(19175042..19176151) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.34 C - 0.20 1 cttcgagggc gacgtagctg cggtaattga ttgagtcacg tccccaagtt 51 gtcagatttg aaactcaaag atattatttc aaaaattgtt cacatcaaaa 101 cgaaatttta aaataatgca atACAATaat ttctttcatt aatttttgga 151 cgcgataatt tagctcTATA TATAattggc catgtgagag atcttctctt 201 CCACAACTTC CAAACACCAT TTAAATCCCC TCTCATTTGG TTTCTTGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.003 +strand +11 : +18 CAAACACC AC RSP00207 Mean Expected Number 0.001 +strand -181 : -173 GCGGTAATT AC RSP00488 Mean Expected Number 0.002 -strand -184 : -193 CTACGTcGCC AC RSP01237 Mean Expected Number 0.001 +strand -37 : -28 CTCTATATAT Totally 4 motifs of 4 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 200. Group TF: GT-2 /AC: RSP00207//OS: Oryza sativa /GENE: PHYA/RE: GTE /TF: GT-2 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G51890 |PROD: the same as GENE |complement(19260457..19261942) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.24 C - 0.22 1 tctgacggta gtaatcgtat acgtcaaggt ccaccatacg gatgcttttt 51 tgctcaatac aaaacatgac acgtaagcgt acaatcagat tagaggcaga 101 ttcacgatac acacgatgta cccttttcac tgctctcgtg tatttaagct 151 ccaaccaatT ATAAAACgcc gcgtagatcc taagagaaga agaattcgtc 201 GTTACGAAAA CCAGTGTGGA CACAAAGCAG AGCAAAGAAG ACTTTTGTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.004 -strand -126 : -133 TACGTGTC AC RSP00142 Mean Expected Number 0.004 +strand -34 : -28 CGCCGCG AC RSP00203 Mean Expected Number 0.005 +strand -183 : -174 TATACGTCAa AC RSP00247 Mean Expected Number 0.006 +strand -133 : -124 GaCACGTAAG AC RSP00254 Mean Expected Number 0.009 +strand -79 : -73 CCTTTTC AC RSP01082 Mean Expected Number 0.001 +strand -55 : -44 AAgCTCCAACCA AC RSP01210 Mean Expected Number 0.005 +strand +42 : +51 CTTTTgTAAG AC RSP01261 Mean Expected Number 0.007 -strand -125 : -132 TTACGTGT AC RSP01660 Mean Expected Number 0.000 -strand -173 : -184 CTTGACGTATAC Totally 9 motifs of 9 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 1000. Group TF: DcMYB1 /AC: RSP01082//OS: Daucus carota /GENE: DcPAL1/RE: box-L4 /TF: DcMYB1 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1478. Group TF: STF1/HY5 /AC: RSP01660//OS: Arabidopsis thaliana /GENE: CKX5/6 (At1g75450)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G52360 |PROD: the same as GENE |19423098..19423896 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +223 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.33 C - 0.15 1 acaaaaacaa aaaaaaaaaa aaaaggaaga ggtgactaat aatgaatgat 51 gcttttacac ttataaaaag gtcatgacgc atcgattaaa taaataaaat 101 gttgtttgtt tgttgaccaa ataagaaaag caaaattact taaaATTGAt 151 ttttttaaaa aaggcagtgt aTATAAAAAc ctttgtcgtt ctcaaatcct 201 CTCTGTAATT CTGGTTTTTC TTGCAATGCT TCTTCCATTT CTCTCCTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.010 -strand -142 : -149 TGTAAAAG AC RSP00447 Mean Expected Number 0.008 +strand -77 : -68 AGaAAAGCAA AC RSP01741 Mean Expected Number 0.000 +strand -91 : -79 TTgTTGACCAAAT Totally 3 motifs of 3 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G52470 |PROD: the same as GENE |19461627..19462590 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.27 C - 0.20 1 catatagtta aagaaaaaac agtaagatca ttacattttt agaaaagctt 51 atagaccaga gcttaaatgt aacaataaat atacaaattg gtaatggtct 101 taagtctatt agtctatgca caacggatat aaaacgcgca tacatatggc 151 ttttacacac aataataaTA TAAATAtaca caaccatctc tcccatacac 201 ATATTTCTTC CCATCGTCAC TAGTCACGAC CACACAAACA AAAAAAATAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.009 -strand -44 : -51 TGTAAAAG AC RSP01559 Mean Expected Number 0.008 +strand -67 : -62 ACGCGC Totally 2 motifs of 2 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: UBQ1 |LOCUS: AT3G52590 |PROD: |19516614..19517910 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.22 T - 0.25 C - 0.19 1 acgagaagtg gtcttttaat gagagagata tctaaaatgt tatcttaaaa 51 gcccactcaa atctcaaggc ataaggtaga aatgcaaatt tggaaagtgg 101 gctgggcctt ttgtggtaaa ggcctgtaac ctagcCCAAT attagcaaaa 151 ccctagacgc gtacattgac ataTATAAAC Ccgcctcctc cttgtttagg 201 GTTTCTACGT GAGAGAAGAC GAAACACAAA AGATGCAGAT CTTCGTGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -88 : -94 CAAAAGG AC RSP00060 Mean Expected Number 0.000 +strand -22 : -11 ACcCGCCTCCTC AC RSP00279 Mean Expected Number 0.001 +strand -5 : +4 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +4 : -5 AAACCCTAA AC RSP00572 Mean Expected Number 0.006 -strand -27 : -34 ATATGTCA AC RSP01033 Mean Expected Number 0.002 +strand -94 : -85 CCTTTTGTGG AC RSP01303 Mean Expected Number 0.003 -strand +5 : -5 gAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 59. Group TF: ABF /AC: RSP00060//OS: Zea mays /GENE: rab28/RE: CE3 /TF: ABF 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G52900 |PROD: the same as GENE |19624098..19625005 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.32 C - 0.13 1 gatcatcaga ttggctccac tttaattacg aaattgattt ctttattttt 51 ccttttttac ttttcctttt ggcgggactg cttgctttga ttttggaatg 101 atgtaaaagc aaaGCAATta tgtttgggaa ggtttaagca aaagcaaaag 151 acaagtgaaa gtaAATAAAT Agatattgag agagacatag agactgttgt 201 AACAAGAAAA AAAAATGAGT AGCAAGAATA ACTCCGGAGC TGCTGCAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -136 : -147 gAAAAGTAAAAA AC RSP00035 Mean Expected Number 0.009 -strand -130 : -136 CAAAAGG AC RSP00069 Mean Expected Number 0.002 -strand -165 : -175 CAATTTCGTAA AC RSP00115 Mean Expected Number 0.008 -strand -157 : -167 AaAGAAATCAA AC RSP00447 Mean Expected Number 0.007 +strand -93 : -84 AGCAAAGCAA AC RSP00447 Mean Expected Number 0.004 -strand -110 : -119 AtCAAAGCAA AC RSP00749 Mean Expected Number 0.004 -strand -167 : -178 ATTTcGTAATTA AC RSP00859 Mean Expected Number 0.001 +strand -192 : -183 GAtTGGCTCC AC RSP00877 Mean Expected Number 0.000 -strand -125 : -133 CCCGCCAAA AC RSP00988 Mean Expected Number 0.000 -strand -123 : -134 gTCCCGCCAAAA AC RSP01640 Mean Expected Number 0.007 -strand -11 : -20 CTATGTCTCT Totally 11 motifs of 10 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: fructose-bisphosphate aldolase, putative |LOCUS: AT3G52930 |PROD: the same as GENE |complement(19637726..19639920) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.31 C - 0.28 1 tacccctcag ctaatttgct gagaatccac gctattaagg ggtagaatta 51 agattagcca acattgccaa ttagagatcc aacggctgaa aaagctattt 101 cttggggaac atgcaaagat ctgaccctta attaatattt tcaccaacca 151 atagactctc atccgcagcT ATAAAACcaa cccttttcct ctactggtcc 201 ACCACTCGTC TGCCTTCTTC CGCATCTCTT TTCATTTCTC TCTGATTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.008 +strand -89 : -83 TGCAAAG AC RSP01497 Mean Expected Number 0.003 -strand -115 : -124 GCCGTtGGAT Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: O-diphenol-O-methyl transferase, putative |LOCUS: AT3G53140 |PROD: the same as GENE |19706621..19708520 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.34 C - 0.18 1 gtgttatcat ttcaaatcaa actttcatac agcttgtgtt tgttctccat 51 ttttcagtaa ttacgaaaat caaaatttta tttttttttg aatttctaaa 101 taatagacta aggtctaaaa ccatcccatt ccatatggac cacacgtaac 151 attaacctta aaaaccaTAT AAAACcatat aaaaccaata ctagtgggtt 201 CTATAGCGAT GTGTAGTTTC ACTTTCACGT ACGAGGAAGA TTAAAAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.007 -strand +32 : +26 GTACGTG AC RSP01013 Mean Expected Number 0.006 -strand -148 : -157 aAAATGGAGA AC RSP01261 Mean Expected Number 0.005 -strand -52 : -59 TTACGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CP29 |LOCUS: AT3G53460 |PROD: 29 kDa ribonucleoprotein |complement(19830188..19832483) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.35 C - 0.17 1 caatgctatt tttatatttt atgtaacaaa gtaactttta tttttaccaa 51 ctcttttgac tgacacagat tttagtaggt aaaaaaaaaa tccaagtggg 101 agatatttca agtggataaa gatttttatt ttttgcaaag aaaaaacgaa 151 aagttccatt ttttttgccA ATAAATAtca aaaactggac ttgttatctc 201 GCAGAACCCT TAAACCTTAT CTCTTCACCA CCAGCTTCTC AAAGCTTTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.007 -strand -83 : -89 TATCCAC AC RSP00122 Mean Expected Number 0.001 -strand -99 : -105 CTCCCAC AC RSP00125 Mean Expected Number 0.009 +strand -82 : -71 AAgATTTTTATT AC RSP00301 Mean Expected Number 0.010 +strand -67 : -61 TGCAAAG AC RSP00314 Mean Expected Number 0.001 -strand -100 : -110 TCCcACTTGGA AC RSP00489 Mean Expected Number 0.004 -strand -120 : -129 TACCTACtAA AC RSP00522 Mean Expected Number 0.003 -strand -86 : -92 CCACTTG AC RSP00522 Mean Expected Number 0.003 -strand -102 : -108 CCACTTG AC RSP01056 Mean Expected Number 0.005 -strand -163 : -173 AAaGTTACTTT Totally 9 motifs of 8 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: aldo/keto reductase family protein |LOCUS: AT3G53880 |PROD: the same as GENE |19964151..19966268 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.34 C - 0.22 1 aattaattcg taatattaca agaccagttt gtccaaattt tggtacatcc 51 atcgaattaa ctaatcgtaa ttactaatta ctaattactc tcatcacatg 101 aaatatgaaa acacaagtat ttgcgtttag ttatatccac gtgtttgaat 151 actaaccgtc tgttgtTATA AAACtccgac gattttcccg ctccgtcgac 201 ACAAACCTCC TCCGTCTTTC GTAAAAGGTT CTCGAGATCT AAGTCTCACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.003 +strand -17 : -10 TTTCCCGC AC RSP00340 Mean Expected Number 0.004 +strand -65 : -56 TCCACGTGTt AC RSP00524 Mean Expected Number 0.007 -strand -57 : -63 ACACGTG AC RSP01104 Mean Expected Number 0.006 +strand +3 : +10 AAACCTCC AC RSP01255 Mean Expected Number 0.002 -strand -57 : -64 ACACGTGG AC RSP01722 Mean Expected Number 0.000 +strand -66 : -55 ATCCACGTGTtT Totally 6 motifs of 6 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G53980 |PROD: the same as GENE |complement(19998557..19999247) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.29 C - 0.25 1 accatccgat ttgataatcc caaataagaa ttatgaggtt tgttcagtga 51 tccctaagac atcaacacct ggaacttatg ttgttggtaa gaacactacc 101 tccctcactc aactcaagtg cttattccac tatctcttca gtgcctcaaa 151 tttccacaca attttccgct aTATAAACCa aacattcact aattgaattc 201 AAACACACAA CTAACAAACA AAAAAACACA AATCTTGGTT CATTTAAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.005 -strand -157 : -163 AACAAAC AC RSP01103 Mean Expected Number 0.001 -strand -160 : -167 AAACCTCA AC RSP01109 Mean Expected Number 0.010 -strand -167 : -174 ATAATTCT AC RSP01520 Mean Expected Number 0.007 -strand -162 : -167 ACCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown 1371. Group TF: HBP-1a /AC: RSP01520//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Hex123-a /TF: HBP-1a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase family protein |LOCUS: AT3G54030 |PROD: the same as GENE |20021931..20024671 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.29 C - 0.13 1 agtttttggg ggttaaagtt ccgccggctt tagtatttta ccatgtattc 51 ctcccttgta tttcaccttt ggatcaatct tatgaattat tcagaggaaa 101 aagaaaaaaa aaaaaaagaa tttaaaaATT GCcaaagttt tgtggaaaaa 151 caactttcgg ataaaaaaca TTTAAATAtt aatttagaaa agaaaaaaac 201 AATTCTCTTT GTAGAGGGAA GTCTGAAAAC GCCGAGAAGA AGACGAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.010 +strand -160 : -154 CCATGTA AC RSP00566 Mean Expected Number 0.008 +strand -147 : -138 CCTTGTATtT AC RSP01202 Mean Expected Number 0.001 -strand -129 : -136 CCAAAGGT AC RSP01687 Mean Expected Number 0.003 +strand -176 : -170 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G54140 |PROD: the same as GENE |complement(20056641..20059550) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +418 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.28 C - 0.21 1 acacgtcctt cgatattgat ctatttacac tttggagtca aaacaagata 51 atatcaaaat ctgatagcac aataggcctt gcggctctaa ctgaaatata 101 caaaaactca aagggttaaa ctgcaaacat gagaagaaaa gtgagcaacg 151 ctcctttcta tttccttgga TATAAAAGct gtacgggacc agagctctgc 201 AAGTCTTTTT TATAAGCTCA TGCTCATTAT TACTCCGACA AGTGCCGTGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 -strand +46 : +37 GgCACTTGTC AC RSP00405 Mean Expected Number 0.003 +strand -170 : -163 TTTGGAGT AC RSP01621 Mean Expected Number 0.007 +strand -175 : -166 TACACTTTgG Totally 3 motifs of 3 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: embryo-abundant protein-related |LOCUS: AT3G54150 |PROD: the same as GENE |complement(20061622..20063759) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.27 C - 0.15 1 ctatatactg actattttgt cttcgacaaa aaatatatta aaacaaaaaa 51 gtcttaaacg acgtcttagg aaggacttgc agtgaaactt tacctcacgc 101 caagttggac ttggttaaac tttttcataa tatattaata gaaacaagac 151 tattcaagac tcgagagagT TTAAATAgaa aacgaattag ttgtgtattc 201 AAACCAAGGA AAGAAAACGA GAGAGGTACG TAGAAGAAAA TGGCTGCCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00314 Mean Expected Number 0.002 -strand -92 : -102 TCCAACTTGGc Totally 1 motifs of 1 different REs have been found Description of REs found 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: aspartyl protease family protein |LOCUS: AT3G54400 |PROD: the same as GENE |complement(20151036..20153620) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.24 C - 0.23 1 gcgcatgtcg atagagaaga gagccaatat tagtgtggac ccaaaaaaca 51 gatagaaaca acgaaaaaat aggagatgga atacagactg ttctctctac 101 gatatacaaa accccactct tcatttttat attcttatta ctttctacac 151 actcatcgta tatcactcac taTATAAACA cacactcaca cattcactct 201 ACAAACACTA GAAACCACAA AGACAAAATC AAGGTCTTAA ACAATGAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.005 -strand -19 : -30 TGTGtTTATATA AC RSP00439 Mean Expected Number 0.007 +strand -72 : -65 ATATTCTT AC RSP00999 Mean Expected Number 0.008 +strand -34 : -24 TCACTATaTAA AC RSP01014 Mean Expected Number 0.003 -strand -74 : -83 aAAATGAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PIP2;5/PIP2D |LOCUS: AT3G54820 |PROD: aquaporin, putative |20312999..20314988 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.24 C - 0.27 1 aatgaattaa atcagtcatt ctacagaaaa ttaatcaccg tagtcggttg 51 ccatcattcc aaaaccttaa aaaaaaccca tgtaaaatga tcattaacaa 101 caacaacaac aacaaccaaa ccaacaaaaa ttaaagtaaa aacagagtcc 151 aaagcctcgt cacatctgcc CATAAATAcc cttcaccgac tcaccatctt 201 ACCACATCAA TTCTCTCATA TCTCTCTCTC ACTTTCGAAT ATATCTTAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.002 +strand -156 : -151 CGGTTG AC RSP00422 Mean Expected Number 0.002 -strand -153 : -158 ACCGAC AC RSP00680 Mean Expected Number 0.007 +strand -61 : -52 aAACAGAGTC AC RSP00864 Mean Expected Number 0.001 -strand +29 : +21 AGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycosyl hydrolase family 20 protein |LOCUS: AT3G55260 |PROD: the same as GENE |20500226..20504053 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.30 C - 0.19 1 tatcatatgg taattaatgt atcaatcaat gcacattctg atactaatca 51 gaacacaaaa gattttgaat tcatcggaac taaacacaca caccttagta 101 agagttaaga aatatgtttc caccgaacta acagaaacat gataccaact 151 caagttggtt gttcgtgtAA TAAATAaaaa ttgaatcttt cgactaaaac 201 AAAGTTTATC TTCTTCTTCT TCTTATGTGA CAAGAACGAA CAATCCTCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00698 Mean Expected Number 0.005 +strand -135 : -125 TGAATTcATCG AC RSP00858 Mean Expected Number 0.006 +strand -192 : -185 GGTAATTA AC RSP01136 Mean Expected Number 0.010 -strand +32 : +26 TGTCACA Totally 3 motifs of 3 different REs have been found Description of REs found 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G55700 |PROD: the same as GENE |20682094..20684351 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.30 C - 0.19 1 taaaactgtg agacaagaga aagaaaattt gttgcatgca ggtaaacaat 51 cttggacagg aagttctcac aagtcaaagt cagcgagcaa acgattttat 101 tctcttttca catgttgcta tgacagctgT CAATttgtaa ttggatcatg 151 agtgtcataa ttCATAAATA taagctatgc tcatgtaacc gtaaaccctt 201 AACGACAAAT TAATTAAACT TCTCCAAAAC TCTTTTCCTC TAAAAAATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.004 +strand -80 : -73 TGACAGCT AC RSP00304 Mean Expected Number 0.005 -strand -69 : -76 TGACAGCT AC RSP00860 Mean Expected Number 0.004 +strand -183 : -175 AGAAAGAAA AC RSP01641 Mean Expected Number 0.006 -strand -183 : -192 TCTTGTCTCa Totally 4 motifs of 3 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G55840 |PROD: the same as GENE |complement(20727974..20729845) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.36 C - 0.22 1 aaagaaaaat aaaaccgaca caaaaatgca aaaaagacag gaaacagccg 51 ttgttgtacg ttgactttca aaaactatga tctttgttta tctctaattt 101 tccgcataat gacgtctccc ttctttttcc tatccgtttc cttcacatct 151 ctctctttat ccttccTATA TATAtcgcaa acgtttttcc tctcattctt 201 AAATATATTC ATCAAATAAA CAAAAATCTC TGTATTTTTT TTTAAAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -171 : -162 AAAAAAGAcA AC RSP00864 Mean Expected Number 0.003 -strand -45 : -53 AGAGAGAGA AC RSP01654 Mean Expected Number 0.002 +strand -93 : -84 AATGACGTCT Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CCH |LOCUS: AT3G56240 |PROD: |complement(20874236..20875470) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.39 C - 0.21 1 tgtactttct gttagtggat tttaaagttg gtaagctttt ttccacatca 51 ggtataacta accttcctaa acctttatac tttattattg gaaatatggt 101 aaatgcacta attcataatg ttctcgtttc ctttacgcta acttctccga 151 atctttgctt ttgcgttacT ATAAATAttc agaagacacc atttcttctc 201 ATTCAACAAA CAAGCATCTC ATTCTCTGAT TCGGTCCATC GATCTCAAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00160 Mean Expected Number 0.001 +strand -184 : -173 GGATTTTAaAGT AC RSP00642 Mean Expected Number 0.006 +strand -101 : -94 TAAATGCA AC RSP00837 Mean Expected Number 0.005 -strand +45 : +36 AGATCGAtGG AC RSP00874 Mean Expected Number 0.007 +strand -181 : -171 TTTTAAAGTtG AC RSP01058 Mean Expected Number 0.002 +strand -188 : -181 TAGTGGAT AC RSP01296 Mean Expected Number 0.005 +strand -32 : -24 CTATAAATA Totally 6 motifs of 6 different REs have been found Description of REs found 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G57020 |PROD: the same as GENE |complement(21109294..21111338) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.32 C - 0.20 1 gtttcaatct aaaaactaac atcgtcgcct tcgttgaatc aatgcatgga 51 ttcgtcgcag catttattct ttattagaca actggccctt caagcgaaat 101 gagggatacg tgtatatata tgcatccaca taaACAATaa gaaaaatata 151 acccttattt ttggatgtta TATAAAATtg ctttacctat atgtgagcta 201 GCAACATTTA CTCATACATA CCAACAGTCA ACAATATCTC TTGTTCCGGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 -strand -115 : -124 GCCAgTTGTC AC RSP00211 Mean Expected Number 0.009 -strand -60 : -70 CTtATTGTTTA AC RSP00331 Mean Expected Number 0.006 -strand -148 : -156 GAATCCATG AC RSP00349 Mean Expected Number 0.001 -strand -151 : -159 TCCATGCAT AC RSP00778 Mean Expected Number 0.003 +strand -166 : -157 TGAATCAATG AC RSP01274 Mean Expected Number 0.002 -strand -87 : -96 TaCACGTATC AC RSP01288 Mean Expected Number 0.004 +strand -95 : -88 ATACGTGT Totally 7 motifs of 7 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays, Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1) 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CBL |LOCUS: AT3G57050 |PROD: cystathionine beta-lyase |complement(21122679..21125641) |SUPPORT | 13 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.32 C - 0.22 1 tgtatcaaat ttcctttttc ttgtcagttt cactgacgaa tatattagtg 51 gcctcatggg tacttaagag ttaagactaa gagtaggtgt acacctactt 101 tcctccacgt gttataacca gaccagattt atttcggttt tgtcttatcg 151 taTCTAAATA aaccgaaaga aaccaaaacc gagacttaaa gccgagagac 201 CTTCGGTTTC TCTTCAGTCG TCTCTACTCT CACTTGAGCA CGAGAACTGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.006 +strand -97 : -88 TCCACGTGTt AC RSP00421 Mean Expected Number 0.008 +strand -23 : -17 ACCGAGA AC RSP01255 Mean Expected Number 0.002 -strand -89 : -96 ACACGTGG AC RSP01687 Mean Expected Number 0.008 -strand -7 : -13 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G57090 |PROD: the same as GENE |21139509..21141167 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.31 C - 0.16 1 tatctagttg ttatgaatct tgtaaattta ttggaaaaaa tcagtaatac 51 accatcacat gtcacagaag ttttttattc caaagggttg ttaataacaa 101 aacagaagat atggtgatca atgtgggtaa gtcttaACAA Tacaggggtc 151 ttgttgataa attcaaggGA TAAATAtcgt ctgtttccct gagcttgggc 201 AACAAGTCCA ACTTCTCTCC TTAAGAAACT CTCCTTAAGA ATTAAGAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.002 +strand -98 : -90 CAGAAGATA AC RSP00872 Mean Expected Number 0.008 -strand -133 : -142 TcTGTGACAT AC RSP00881 Mean Expected Number 0.009 -strand -106 : -115 ATtAACAACC Totally 3 motifs of 3 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: BGL2 |LOCUS: AT3G57260 |PROD: glycosyl hydrolase family 17 protein |complement(21199496..21200838) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.32 C - 0.13 1 cttgtgtaga aaactcatat tgttagactt ttcaaagcgt atatttagag 51 agttatttgt gaattataat ggtgattaag gtgaaacata acaaaacaga 101 tgatattgat agatcatttg atttcattcA TTGActgact tgcacagttg 151 caccccaggc ttggctcTAT AAATTaggcg gtaaatggaa tgattaaaac 201 ATATCATTTT TCACAGAATC ATAGAAAAAT CAAGAAAATG TCTGAATCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.010 +strand -171 : -164 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: BG1 |LOCUS: AT3G57270 |PROD: glycosyl hydrolase family 17 protein |complement(21202216..21204168) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.10 T - 0.45 C - 0.17 1 tctctgtctc tgattatgta gcttaccata tattacacca ttgtattaat 51 tattcagaga ttaccaactc attattttat cttgttgcct aattccgtgt 101 attaatttta gtttcatATT GAcattttac atttggttat atattaatgt 151 tctttctcta gaatttacTA TATATAttgt ttatgctagc taggatcaat 201 GTCATAACAG TAAATGATTT CCACCTCGCT CTTAATTTTC TACAAATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.002 +strand -69 : -58 TtTGGTTATATA AC RSP00235 Mean Expected Number 0.001 -strand -152 : -163 TTAATaCAATGG AC RSP00503 Mean Expected Number 0.001 +strand -15 : -8 CTAGCTAG AC RSP00503 Mean Expected Number 0.001 -strand -8 : -15 CTAGCTAG Totally 4 motifs of 3 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G57450 |PROD: the same as GENE |21272911..21273599 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.17 T - 0.19 C - 0.19 1 aagattacaa agagatagag aatcaaaaaa aggaaagaat taaggggcaa 51 atatgaaata attaaaaaca agggagccaa aggaacaatg taagaaaagc 101 aataaaatta aaaacaaaac cctcaaaaag aagaaagcgg agactcgtta 151 gctttttcct gcctccTATA AATTgaacgc gacttgcaga acctttcctc 201 ATCGTCTCCG TCTCCTCTCT CTCTATCCAC GAGAAAGAGC AGAAAAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00710 Mean Expected Number 0.003 -strand -137 : -149 TAATTATTTCaTA AC RSP00864 Mean Expected Number 0.000 -strand +24 : +16 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DEAD box RNA helicase, putative (RH11) |LOCUS: AT3G58510 |PROD: the same as GENE |21650955..21654772 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +630 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.42 C - 0.11 1 ttacatataa gttgaatcgt ttttaagtta gatacaatta aattcagaat 51 aaacaatttt aaagttctaa agatttaagt gtaaatttgt ttccccaata 101 attATTGTat atatgttttt ctcaaactct tatgagtgta tataattaga 151 ttttaaatca attcttaaaa TATAAAACaa gctaatctca ttatcatacc 201 ATATTTTTGG CTTAAGGTCA TTTTGAAGAT TAATAACATG TCTATTTTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00574 Mean Expected Number 0.008 +strand -156 : -149 CAGAATAA Totally 1 motifs of 1 different REs have been found Description of REs found 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ethylene-responsive transcriptional coactivator |LOCUS: AT3G58680 |PROD: the same as GENE |21718253..21719881 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.18 1 tttttagtta atatagagat caaatttggg ccaaaattat ctacgagaaa 51 gtctgtctca actatccaaa gttaaagata ttttcgctga gaagttaaaa 101 ataatatttc gatgggccct TCAATcttag ctaatttact aaagtaaccc 151 ttgtcgaaaa atcaaaaaTA TAAAATcgca aaacgaacac ggcttagttt 201 ATCTTCTTGT CTCTCTCTCA TTTCTTGTTA TTATCCACGA ACGAAGAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.009 -strand -127 : -136 TAACTTTGGA AC RSP00864 Mean Expected Number 0.001 -strand +18 : +10 AGAGAGAGA AC RSP01641 Mean Expected Number 0.004 +strand +5 : +14 TCTTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pfkB-type carbohydrate kinase family protein |LOCUS: AT3G59480 |PROD: the same as GENE |21993998..21995572 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.07 T - 0.35 C - 0.21 1 ccaaatcata acatatatgt aaacaaccaa tagaatatta cgattaaaaa 51 ataagttacc aaacacagtt tagatatctt atctgatcaa tctttaaatg 101 gataaatttg aatttgtatt aattaaaagt cttgtggatt tgactaaacc 151 actcacccta atacctctaT ATAAACCctt gattctctct aatacctctc 201 ATTATATCCA AAACATAATC TCTCTCTATC TCTCTCTATT TTGCTCAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00282 Mean Expected Number 0.008 -strand -97 : -103 TATCCAT AC RSP00864 Mean Expected Number 0.003 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +27 : +19 AGAGAGAGA AC RSP01053 Mean Expected Number 0.008 -strand -118 : -126 GATAAGATA AC RSP01094 Mean Expected Number 0.002 +strand -106 : -95 TAAaTGGATAAA Totally 5 motifs of 4 different REs have been found Description of REs found 273. Group RE: Amylase-element /AC: RSP00282//OS: Oryza sativa /GENE: Amy3D/RE: Amylase-element /TF: unknown ||Identical REs AC: RSP00675 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: kelch repeat-containing F-box family protein |LOCUS: AT3G59940 |PROD: the same as GENE |22153877..22155301 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.39 C - 0.18 1 acttgtcgag tgtctagatc acactattgg tttgaattcg taattttact 51 gtattcttgt ttgtttgttt tcggaaaata tctataacaa aataagtgat 101 aataatagaa gaagaaaaga cgataattat ctagggaccg ttttgttcag 151 tgtcttcttt atcttctttg tTATAAAAGc ctctttgcca cttctcttac 201 CAATAGCATC TCCTTCAGTG TCTCTTACAG TTTCCGATCT ATCCAAATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -14 : -5 GCCACTTcTC Totally 1 motifs of 1 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: tRNA-binding region domain-containing protein |LOCUS: AT3G59980 |PROD: the same as GENE |complement(22165221..22166618) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.30 C - 0.16 1 tcgtcgttaa cacaagcttt gaatcctttt ataaaaagct tcagtgcctc 51 tgttaaaaaa aaactatgta tttgccatga acatgaattt gctcatcaat 101 cttactagaa gttgATTGAt aaagctcctt gctttggaga attggtaaag 151 ctactaattt gacaagatca TATAAAAAga tatataaata cagatatggt 201 AAAGAAGAGA GAACACTGGG ATCACACAGA GATCTTAGCC AATAGACTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.003 -strand +13 : +3 TTCTCTCTtCT AC RSP00680 Mean Expected Number 0.007 -strand -146 : -155 TAACAGAGgC AC RSP01636 Mean Expected Number 0.001 -strand -62 : -72 CTCCAAAGCAA AC RSP01638 Mean Expected Number 0.001 -strand -62 : -72 CTCCAAAGCAA Totally 4 motifs of 4 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MAP2B |LOCUS: AT3G59990 |PROD: methionyl aminopeptidase |complement(22166696..22169706) |SUPPORT | 12 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.16 T - 0.26 C - 0.16 1 gtaaaaagtt aacttaacaa aaacttcaaa agcaaaaaag aaaattaaca 51 taagaataag atataggcac cgccaatcgt ttagagaata tttacaagaa 101 accaagcccg acccattaag aaattttggt aaggcccatt aattaacgaa 151 acactatacg gggggtttta aCATAAATAa tatagtttta attgtctcat 201 TTTGCAAATT CTCAAAAATC TATCAAGGGT TTGCCGTACA AAGGTATCGG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G60420 |PROD: the same as GENE |22345406..22346760 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.29 C - 0.19 1 tcgtagtaat aacaatgatg agtcgtgttt taaaagaatt ttgttacttt 51 cttgtgtgat aagcttcctc gcaatttcct actgaggaaa agaaatgcaa 101 ttttaacttc cttcaaaagt ttatagtaaa aaaaacaaaa ctcaacatct 151 cattgcttgc atatatgTAT AAATAcctcc cacttctagt aacaaagatc 201 ACACCGAGAA AGGCAATGGA GTCGGCTAAA TCAATCATCG GTGGCCACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.007 +strand -24 : -18 CTCCCAC AC RSP00359 Mean Expected Number 0.010 -strand +26 : +21 GCCGAC AC RSP00421 Mean Expected Number 0.010 +strand +3 : +9 ACCGAGA AC RSP00654 Mean Expected Number 0.005 +strand -24 : -15 CtCCCACTTC Totally 4 motifs of 4 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: BRH1 |LOCUS: AT3G61460 |PROD: |complement(22752486..22753259) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.08 T - 0.34 C - 0.27 1 cttcaatctt ttcccatttc tactcttttt cacctcattg gaacgttcac 51 ataacaaacg tcacagtcag ttaactctat caaaatcaat cttacacgac 101 acgatgtcgt ttagacgaat cctgtacctt ccttccttcc ttcatcttct 151 tccttccttt gatttcTATA AATCaaactc ctcatgacat taaaaaaatc 201 AACTTTTTCA AAAAAAGGAA AAAAAACAGA GCTCACTCAT TATTATCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.003 +strand +6 : +21 TTTCaAAAAAAGGAAA AC RSP00080 Mean Expected Number 0.003 -strand +21 : +6 TTTCCTTTTTTtGAAA AC RSP00115 Mean Expected Number 0.009 -strand -32 : -42 ATAGAAATCAA AC RSP00157 Mean Expected Number 0.010 +strand -39 : -28 ATTTcTATAAAT AC RSP00157 Mean Expected Number 0.010 -strand -28 : -39 ATTTATAgAAAT AC RSP01033 Mean Expected Number 0.002 -strand +18 : +9 CCTTTTTTTG AC RSP01087 Mean Expected Number 0.004 +strand -79 : -72 CTGTACCT Totally 7 motifs of 5 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: delta-8 sphingolipid desaturase (SLD1) |LOCUS: AT3G61580 |PROD: the same as GENE |22797022..22798947 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.22 C - 0.21 1 cttaattgcc caataatggt ccctctttac caattctgat ataccaccca 51 aaattaacat caaacccaat atttaaagtc ccacacgtga gaacgactga 101 cgtcggcacg ctttagccac gtaatttcgg tctccaaaaa tTCAATatta 151 atccgcgaaa attcactaaa TATAAAACaa acccataata taaggaggat 201 AAGGAAGGAG TCGAAGATAA GCGGAGAGAG AGAGAGAGAC AGAGAGAGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.005 -strand +22 : +13 GCTTATCTTC AC RSP00043 Mean Expected Number 0.002 -strand -78 : -85 TACGTGGC AC RSP00064 Mean Expected Number 0.004 -strand -76 : -85 AtTACGTGGC AC RSP00247 Mean Expected Number 0.006 +strand -85 : -76 GCCACGTAAt AC RSP00253 Mean Expected Number 0.002 +strand -51 : -44 AATCCGCG AC RSP00864 Mean Expected Number 0.002 +strand +25 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +27 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +29 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +31 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +41 : +49 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 +strand +23 : +31 GGAGAGAGA AC RSP01034 Mean Expected Number 0.006 -strand -79 : -85 ACGTGGC AC RSP01250 Mean Expected Number 0.002 +strand -64 : -55 AAAATTCAAT AC RSP01283 Mean Expected Number 0.000 +strand +24 : +40 GAGAGAGAGAGAGAGAc AC RSP01476 Mean Expected Number 0.006 +strand -129 : -122 TTTAAAGT Totally 15 motifs of 11 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AGP20 |LOCUS: AT3G61640 |PROD: arabinogalactan-protein (AGP20) |complement(22821016..22821722) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.28 C - 0.20 1 acaataaatt ccaattccat ttgttgaggg aatagaaaga aattaaacga 51 accaactagg aacggtcatt tagccagaaa atgacacatg tcagttaact 101 cctttgaACA ATtgacagaa aagttctaga gtggattacc ggctataccc 151 ggtaaacagt caattacTAT AAAAAcgcgt tatagccata tatatgatcc 201 AAAGGGGTTT TTGGTTGTCC GTGTCGTTCG TCGTCTCTCT CGCCGGACTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.004 +strand -167 : -159 AGAAAGAAA AC RSP01469 Mean Expected Number 0.010 -strand -108 : -117 TgACATGTGT AC RSP01598 Mean Expected Number 0.010 -strand -115 : -122 TGTCATTT AC RSP01639 Mean Expected Number 0.009 +strand +13 : +22 GGTTGTCCGT Totally 4 motifs of 4 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATHB-12 |LOCUS: AT3G61890 |PROD: |complement(22925129..22926300) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.29 C - 0.19 1 ccacaaattt tggacgtata tttttagccc gtggttccac aatatttgca 51 ggtcttttta ttcaatgagt ttattttgtc ttggttgaat aatgaaattt 101 ccaaatataa aaaataatag aaatccgagg ccctacacaa gcacacatag 151 taactcccac atTATATATA agcggccaat atcagcaact cagagattcc 201 AGAAAGAAAG AAAAAAAAGA AACAAATAAT TCCAAAACCT TCTCTCTTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand -103 : -88 TTTCCAAATATAaAAA AC RSP00085 Mean Expected Number 0.006 -strand -88 : -103 TTTtTATATTTGGAAA AC RSP00122 Mean Expected Number 0.007 +strand -47 : -41 CTCCCAC AC RSP00444 Mean Expected Number 0.000 +strand -1 : +13 cAGAAAGAAAGAAA AC RSP00860 Mean Expected Number 0.005 +strand +1 : +9 AGAAAGAAA AC RSP00860 Mean Expected Number 0.005 +strand +5 : +13 AGAAAGAAA Totally 6 motifs of 4 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ANAC066 |LOCUS: AT3G61910 |PROD: no apical meristem (NAM) family protein |complement(22939981..22941417) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.35 C - 0.14 1 tgcgaactta taatgaaaac atcaaatatt cggaaaaata atactccact 51 gttaaaaaga aaacttaaca aaggaattaa aaatatgaga gcaaaagaac 101 acatgcattt tctcatgcat gtactattat ttattttttt gcagagttga 151 tgtaaaaaat atacacaTAT ATATAgacat actttggtta gttataaact 201 CGTTCTATTT TCTTCTCCTT TTTCTATCTT TAGCAATGAA CATATCAGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.001 +strand -87 : -80 CATGCATG AC RSP00108 Mean Expected Number 0.001 -strand -80 : -87 CATGCATG AC RSP00259 Mean Expected Number 0.006 +strand -16 : -10 TGGTTAG AC RSP01470 Mean Expected Number 0.006 +strand -88 : -79 TCATGCATGT Totally 4 motifs of 3 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G62630 |PROD: the same as GENE |complement(23174723..23176171) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.30 C - 0.18 1 ttatcaaatg aattacgtat attaattaag accactagat tttcaacttt 51 ataattcatg catacaaaac atgtcaggat tattaaaaaa aaaagatcac 101 gtatactttt ctctacagga aaatagcata agaatatttt ttactacaga 151 ataaataaag aaaaagggtc AATAAATAgg gagaataaaa aagcagcttc 201 ATACATACAA CACTGCATAT CTCTGCTTCT TTCTCTCCTC GCTCTTCGCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00609 Mean Expected Number 0.000 -strand -163 : -175 CTaGTGGTCTTAA Totally 1 motifs of 1 different REs have been found Description of REs found 585. Group RE: UN I1 /AC: RSP00609//OS: Lycopersicon esculentum /GENE: rbcS1/RE: UN I1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G62820 |PROD: the same as GENE |23240724..23241476 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.28 C - 0.22 1 actaaaccaa cgaattgtta tcggcaaaac aacaaattaa taaaatcgaa 51 cgaagtgtta gaacgaaatg ttgtgatcat aactccgaca cctacaaatg 101 gaccgccata ctttttatac tttcacttta aaacctacca aaacccctaa 151 attaaattta tacgtgtcTA TATATAcgat ctctcgtcga gacaccaatt 201 AATTTTGTAT AAAGATTACA ATTCTCACAA AACATGAAAA CTCCCATGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.003 -strand -33 : -42 GACACGTAtA AC RSP00070 Mean Expected Number 0.001 +strand -40 : -33 TACGTGTC AC RSP01035 Mean Expected Number 0.004 +strand -39 : -33 ACGTGTC AC RSP01288 Mean Expected Number 0.002 +strand -41 : -34 ATACGTGT AC RSP01601 Mean Expected Number 0.008 +strand -80 : -73 TTTCACTT AC RSP01725 Mean Expected Number 0.000 -strand -32 : -43 AGACACGTAtAA Totally 6 motifs of 6 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G63090 |PROD: the same as GENE |23324403..23325964 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +189 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.36 C - 0.15 1 caaattcctt tcttcttggt tatgtattag ttcagttcca aactaattaa 51 ctagctattt aattaaacgt atataccata atgtaaattt ttaattgtaa 101 tcatcgaaaa tatcgatacc tactgtcatt tggtcaTCAA Tcggaagttc 151 tgtttTGTAA ATAgagatac taataagaac aaaaaagacc acaatatggt 201 GTTGTCTTCT TGATTGGTGC TAAAAACATT TGCCTTGATA AACAAAAAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00862 Mean Expected Number 0.002 -strand -188 : -196 AGAAAGGAA AC RSP01458 Mean Expected Number 0.009 -strand -105 : -117 AaTTAAAAATTTA Totally 2 motifs of 2 different REs have been found Description of REs found 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: kelch repeat-containing F-box family protein |LOCUS: AT3G63220 |PROD: the same as GENE |complement(23368367..23370213) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +640 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.33 C - 0.16 1 aatcgacata agtttgtatt cttctagact tggtgtcaat ttctctcaca 51 tgtgtatgtg ttgatgaaaa gaaaacgttt tgatattttg tgtggaaagc 101 agcaacccaa agaaaaacat aaaaaggccg gtacggggga gaatcataaa 151 tgatgatTAT AAAATcggtt tagtaatatc ataaacgtaa aaacgacgac 201 GTAGCTTCTT TATTAAAACC TTGTTCTCTC CTTGCTCTTG TTGTTCCTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01086 Mean Expected Number 0.009 -strand -10 : -19 TTTACGTTTa AC RSP01469 Mean Expected Number 0.008 +strand -155 : -146 TCACATGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATMRK1 |LOCUS: AT3G63260 |PROD: protein kinase, putative (MRK1) |complement(23383856..23385982) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +260 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.30 C - 0.23 1 agaagcaaag acagacgagc tctgtttttg caagagagag ttttttataa 51 taaaaactgg aaaagggcaa caaaacgact ctttggccgg tgaaactgtc 101 aaaaagacat taagacttgg tctctctccc actgcaccgc cgatccttct 151 ctacttgtca aacTATAAAA Gaaaaagagt attttttttt gtggagacca 201 CCACCACCAC CTTCGATCGA TTTCTACTAA CTTGTTCTTC TTCTTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand -154 : -146 ATAATAAAA AC RSP00068 Mean Expected Number 0.006 -strand -42 : -51 GACAaGTAGA AC RSP00865 Mean Expected Number 0.001 -strand -72 : -80 GGAGAGAGA Totally 3 motifs of 3 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G63390 |PROD: the same as GENE |complement(23422141..23422943) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.24 T - 0.27 C - 0.16 1 ctgcttactc tacttggcgg atcgagccgg agacggagat atgaaacgag 51 tagcggcagc aatagttctc gagaggatat atcaagtaga ataatctagt 101 ccagtcggtt agtagtagta tcgttatact aattatgttt tggatccccc 151 aaacttaatt aattaAATAA ATAtaggtgg atggcctcaa tcaaaagccc 201 GATGGGCCTT TGAAGAGAAA TTGAAATGAT GGAAGATGAC GATGATTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.002 -strand -183 : -192 GCCAAGTaGA Totally 1 motifs of 1 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G00390 |PROD: the same as GENE |complement(171497..172843) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.34 C - 0.17 1 caaataatat tctttgagat ttagaatctt aatttaatga caatattaat 51 tgtttaactc atagaacaat ggaattttaa cgggaactgc tacattggaa 101 atatgaaacg atttgaataa ggaaagcaaa tttcgcaatt ATTGTttgag 151 aatatcgaaa ttgatTATAA ATAttccttt tcacttatca tcgtttcgtc 201 ACAAACCCTA AGAAGCTTCT CATCTTCCTC ACAAACCCTA AGAAGCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +41 : +33 TTAGGGTTT AC RSP00279 Mean Expected Number 0.002 -strand +11 : +3 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +3 : +11 AAACCCTAA AC RSP00369 Mean Expected Number 0.002 +strand +33 : +41 AAACCCTAA AC RSP00447 Mean Expected Number 0.006 +strand -81 : -72 AGgAAAGCAA AC RSP00950 Mean Expected Number 0.001 +strand +28 : +38 CTCACaAACCC AC RSP01031 Mean Expected Number 0.010 +strand -178 : -171 AGAATCTT AC RSP01060 Mean Expected Number 0.007 +strand -65 : -57 CAATTATTG AC RSP01060 Mean Expected Number 0.007 -strand -57 : -65 CAATAATTG AC RSP01077 Mean Expected Number 0.003 -strand -57 : -65 CAATAATTG AC RSP01303 Mean Expected Number 0.005 +strand +2 : +11 cAAACCCTAA AC RSP01303 Mean Expected Number 0.005 +strand +32 : +41 cAAACCCTAA Totally 12 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G00780 |PROD: the same as GENE |334733..336310 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.33 C - 0.18 1 aaacttgtga tgtatataaa tgcttatcaa tctcgaatct ctctgttact 51 gtagcgtgta atccacgttt gaagtttttg ttcgattcga taaatgttgg 101 agccaaaaca gagacatcaa caaaaacatg ggatcCCAAT gaataaatag 151 ataaactctt gtctgtcTAT AAATAgactt acatcttcaa aaaagatttg 201 TATAAGTCTC CTCCACTTAA GAAGATATCA TTTGTAGCTT CTTACAATGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01296 Mean Expected Number 0.007 +strand -34 : -26 CTATAAATA AC RSP01641 Mean Expected Number 0.005 +strand -44 : -35 TCTTGTCTgT AC RSP01734 Mean Expected Number 0.007 +strand -139 : -133 TCCACGT Totally 3 motifs of 3 different REs have been found Description of REs found 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATGSTF2 |LOCUS: AT4G02520 |PROD: glutathione S-transferase, putative |complement(1110452..1111624) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.33 C - 0.20 1 tacataacca atgtaaaagc aaatatttaa acgttaaaca gtccaattca 51 gctttgaaaa atcctcccag aagaagaaga ctagtcaata ttggttgcga 101 tggccttgta gaggcattat tatctgttag ataatattaa acattaatga 151 gaaagtagaa atgcttctgT ATAAATAcct tcattacttg tgtcttattt 201 CATCACCTTC ACCTTCAACA TCAAACATCA CATTTCTTCC TCTTTTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.006 +strand -189 : -182 TGTAAAAG AC RSP00543 Mean Expected Number 0.010 +strand -89 : -83 AGGCATT AC RSP01600 Mean Expected Number 0.009 -strand -142 : -149 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATHM2 |LOCUS: AT4G03520 |PROD: thioredoxin M-type 2, chloroplast (TRX-M2) |complement(1562357..1564164) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.09 T - 0.49 C - 0.14 1 ttttctactt ttttcggtta ttttgggcaa atgatatcta cagctcaaca 51 aatcaaaaaa attcaaaaat atttcaattt attatttctc gatttttttc 101 acaactgtat tttaATTGTa tttttagtag aaatacttat ttttccaaaa 151 atatttgttt gtgttgatgt ataTATAAAA Aatctgcatc agtgttttgt 201 CTACATTTTC TCTTCCATTA GTTTCGTTAT CTTTTTATTT TCTCTATCTA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: plastid-lipid associated protein PAP |LOCUS: AT4G04020 |PROD: the same as GENE |1932149..1933948 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.30 C - 0.24 1 taaaacaatg atctttaacc atccacgtgt caaaatccca ccttagctta 51 cctcatttgt tctattccaa atacctattc tatcccttgg atcttgactt 101 atatgttcat aagaaagtgt accagataag ggtatatacg tcatttacag 151 tccagctcaa cggtTATAAA ATcctaattc gtgaggtttc tctgaagaac 201 AAACACAAAA ATGGCGACGG TACCATTGTT CACCCAGTTT CCCTGCAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.007 +strand -179 : -170 TCCACGTgTC AC RSP00068 Mean Expected Number 0.006 -strand -170 : -179 GACACGTgGA AC RSP00188 Mean Expected Number 0.004 +strand -179 : -170 TCcACGTGTC AC RSP00203 Mean Expected Number 0.005 +strand -66 : -57 TATACGTCAt AC RSP00204 Mean Expected Number 0.002 -strand -170 : -179 GACACGTGGa AC RSP00340 Mean Expected Number 0.005 +strand -179 : -170 TCCACGTGTC AC RSP00441 Mean Expected Number 0.007 +strand -90 : -81 AAgAAAGTGT AC RSP00524 Mean Expected Number 0.008 -strand -171 : -177 ACACGTG AC RSP00682 Mean Expected Number 0.002 -strand -170 : -179 GaCACGTGGA AC RSP01035 Mean Expected Number 0.008 +strand -176 : -170 ACGTGTC AC RSP01103 Mean Expected Number 0.002 -strand -12 : -19 AAACCTCA AC RSP01255 Mean Expected Number 0.002 -strand -171 : -178 ACACGTGG AC RSP01274 Mean Expected Number 0.005 +strand -179 : -170 TCCACGTgTC AC RSP01722 Mean Expected Number 0.000 +strand -180 : -169 ATCCACGTGTCa Totally 14 motifs of 14 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G04630 |PROD: the same as GENE |complement(2331675..2332798) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.44 C - 0.17 1 attctgtttc ggttctttcg gttgtagaat ttagaatcca ttcggttatt 51 ttccaatttt ctgttcggtt tagttatttt tgtttcggtt tcagttcggt 101 acattcggtt cggtttattt acccagactt gtatatgact tttctatttc 151 ttttatctta ttttgtgTAT ATATAtatat atatattctc acttaactca 201 AAAACAACAA CATCAACAAC AAAACTCTTT AAAAAGCAAG AAAACTTTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00881 Mean Expected Number 0.004 +strand +12 : +21 ATCAACAACa AC RSP01210 Mean Expected Number 0.006 -strand +36 : +27 CTTTTTAAAG AC RSP01233 Mean Expected Number 0.003 +strand +35 : +41 AGCAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ferredoxin--NADP(+) reductase |LOCUS: AT4G05390 |PROD: the same as GENE |complement(2738712..2740562) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.33 C - 0.22 1 cgtggtgaaa agtaaagaag atccaacaca gacaaaaagc aatttgtcca 51 ctaagatctc tcgagagcca aaaaaaagtt gagaaatttg cagtcagtat 101 gggctgctct gttgttgtct cttctgggcc ttgaaaggat cttcttcttc 151 ccctcacctt cttacTATAA ACCcagaatc atcctctgtt tcttttgttc 201 CTCAAATCAT TTTTTTCCTC TCGATTGTGA GATCAATTAT TAATATTCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00953 Mean Expected Number 0.004 +strand +34 : +42 CAATTATTA AC RSP01641 Mean Expected Number 0.010 +strand -88 : -79 TgTTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G09830 |PROD: the same as GENE |6188764..6190850 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.32 C - 0.20 1 caaaaaattg tttacaaaaa tttgctaaaa ctctcttcaa aaatatttaa 51 cacaattaac aaaaacaaat tccaaaactt tgtaataaga caataagtaa 101 TCAATctcca aaaaaaaaaa aaacaaaaaa aaaaaaacct tgttggtttg 151 tttgggtctt gccgtttcgT ATAAAAGtgc gaagtaccct ctctctaccc 201 AATTCCTCTT GTTTTGTTTC TCTTTCATAA TCTCCAATCT TCTTCGGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.007 -strand -49 : -55 AACAAAC AC RSP00870 Mean Expected Number 0.006 +strand -31 : -22 TaTAAAAGTG AC RSP01017 Mean Expected Number 0.005 -strand +21 : +14 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 60S ribosomal protein L9 (RPL90D) |LOCUS: AT4G10450 |PROD: the same as GENE |complement(6462949..6464521) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.34 C - 0.16 1 gtataatgaa tttgtatttt caatttgaaa atttaataaa ataagttatc 51 ctttactatt ttaatgaata caaaaattta taaaattaaa attaaaagaa 101 aaaatgaaat gatttttaaa agagttgttt ttaagattaa aaccaaaaac 151 aaaacctaga gacgaccTAT ATATAagctt tagggttttc ttctctctgt 201 ACCCTTAAAC TCCGTTACCC TAAACCTCAA GCCGTCGTCT CCAAAGTTCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.006 +strand -93 : -81 AATgATTTTTAAA AC RSP00260 Mean Expected Number 0.004 +strand -22 : -16 TTTAGGG AC RSP00279 Mean Expected Number 0.001 +strand -21 : -13 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -13 : -21 AAACCCTAA AC RSP00838 Mean Expected Number 0.003 +strand +32 : +37 CCGTCG AC RSP01103 Mean Expected Number 0.008 +strand +22 : +29 AAACCTCA AC RSP01303 Mean Expected Number 0.001 -strand -12 : -21 aAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: nodulin MtN3 family protein |LOCUS: AT4G10850 |PROD: the same as GENE |6674994..6676976 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.10 T - 0.38 C - 0.22 1 ctaagacatt tgtccttata taagtctaat aaatgtgtgt tttaattcaa 51 tacctccaaa aataatttca aaaaactaga gttactgaat tggtgctttc 101 acacggtgca tgcATTGTat tcacacctat atgcatgtca tatattcatg 151 gtctctatga tctcgctcta TATAAACAcc acccaatcga ccaaccttct 201 TCTCTGATTA TTTTCTCAAA TTATTTAATT AATTTCTTCT TCTTCATCAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.002 -strand -89 : -95 CATGCAC Totally 1 motifs of 1 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: KELP |LOCUS: AT4G10920 |PROD: |complement(6697672..6699189) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.32 C - 0.14 1 aattttaagg agaaaataat agataaaaat aaacattatc catattttat 51 agataaaaat gagcgatgga ttaccaccac gcttatacga ttgcgataat 101 tacatccata tttatTCAAT tttaaagaaa atataataga taaacataag 151 cattatccat tttTATAAAT Agaaatgagc gatggattac caccacgctt 201 ATACGATTGC GATAATTTCA TCTATACTTA TCGGGTTTAT AACACCGATA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: cysteine proteinase, putative |LOCUS: AT4G11320 |PROD: the same as GENE |6887250..6889055 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.31 C - 0.17 1 aaaaacgaat ttttagatac aacatatatt tgaaaaagtt cttatttaca 51 aatcattggt gaaaaattta gacactactc gacacaaatg catgagtagg 101 tttacccatt tgttcacacc aatggacacg ttataaataA CAATtttaat 151 atatctgagc gctgagtacT ATAAATActg tcatgtgtta gccaaaaaga 201 ACATAACACA AAATCCTCTT CTCTTCTTTA ATAACTTTTA GAAACACAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00962 Mean Expected Number 0.006 +strand -108 : -102 TGAGTAG AC RSP01035 Mean Expected Number 0.005 -strand -70 : -76 ACGTGTC AC RSP01301 Mean Expected Number 0.002 +strand -32 : -23 CTATAAATAC AC RSP01470 Mean Expected Number 0.009 -strand -106 : -115 TCATGCATtT Totally 4 motifs of 4 different REs have been found Description of REs found 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G11860 |PROD: the same as GENE |complement(7134078..7138497) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.37 C - 0.20 1 cataattctt ctcatacatc aaataccgga ataaatttga aaaattggtc 51 gttactatat ttggttcaat agcaatttaa acaataccgg aatttcgatt 101 tggtacgtac cggtttggtt atgtgacaca ttTCAATatc aaccttccca 151 taaaagttct ttctcgtaaT ATAAATTaaa tcctctttgc tctctcgctc 201 GCTTCCTCTT TTCGATTTGG ATCAGAAAAA ATAAAATTTC TTCGGAATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.005 -strand -92 : -101 TACgTACCAA AC RSP00872 Mean Expected Number 0.009 -strand -71 : -80 TGTGTcACAT Totally 2 motifs of 2 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G12070 |PROD: the same as GENE |7231816..7234495 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.42 C - 0.16 1 tcattgattt tattctattt taatttatat cgaatttttt tgatatttca 51 acactaagat tttttcacat tttttaattt aagaatcttg aaattactta 101 ttaaagaacc aaatcaaaat ttctaaagct ctagttcctt gacaagtggc 151 gttgtttaag atTTTAAATA atcctaatat ctctagtaaa ataaaataac 201 AGCCAAGTAC GACTTTTTTG TATTCACTCT CTCTCTCAAA GATTCCGTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.000 -strand -51 : -60 GCCACTTGTC AC RSP00307 Mean Expected Number 0.006 +strand +2 : +7 GCCAAG AC RSP00522 Mean Expected Number 0.001 -strand -52 : -58 CCACTTG AC RSP00840 Mean Expected Number 0.004 -strand -51 : -56 GCCACT AC RSP00864 Mean Expected Number 0.002 -strand +36 : +28 AGAGAGAGA AC RSP01031 Mean Expected Number 0.010 +strand -119 : -112 AGAATCTT Totally 6 motifs of 6 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 785. Group RE: CAT /AC: RSP00840//OS: Arabidopsis thaliana /GENE: H4A748/RE: CAT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G12390 |PROD: the same as GENE |7336494..7337353 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.32 C - 0.18 1 agtggtttct actagggaat tattgttgta tacttgtatc agaattccaa 51 agtgtattgt tttctaatca ctaaatggaa aaccatttgg agtttatttt 101 ttaatacaga ttgtcttttt gtaaACAATa tctataacaa aaaaaaatac 151 aataaatgta gctctccTAT AAATAacacc tcactcgtgt atacacacat 201 ATGCCTTTTA ATTGAAACGC ACCACAAATA GAACAAAGAA CCCCACACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.002 +strand -115 : -108 TTTGGAGT AC RSP01639 Mean Expected Number 0.008 +strand -92 : -83 GATTGTCTTT Totally 2 motifs of 2 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G12530 |PROD: the same as GENE |complement(7428024..7428560) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.06 T - 0.33 C - 0.17 1 atattttagg cactattttt attatctaga ttagggaccc tcatatagaa 51 ttctaactat aagattaaaa attaacaagg agataaatat tttaattaac 101 tttacgtact ttatccaaaa tacctaaatt taatattacc ctaatatact 151 aaaccttatc aaacacTATA AATAcaataa atctcccatc atatctatat 201 ATGCTACATA ACTCAAAGTA ACAAACATAC ACATATAACA TATAGAAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01301 Mean Expected Number 0.004 +strand -35 : -26 CTATAAATAC Totally 1 motifs of 1 different REs have been found Description of REs found 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: AIR1 |LOCUS: AT4G12550 |PROD: |7439112..7439802 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.06 T - 0.31 C - 0.22 1 ttaattagga ccatatactc ttagaaattg ccagctaatt tgaacaatga 51 ccatttaagt gttttcaaat aatcaaatca tatccatata aaaataatta 101 gtcaactaat cccctattaa gaaaaatcaA CAATtaaaac attctcattt 151 cctcctaatg aatacccTAT AAATAcccac taaaaactta catttctccc 201 ACCAATCTCA AAGCAAATTA AATACACTAC TACTTCTTGA GCTTTTAAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.005 -strand -102 : -114 AATTATTTTTAtA AC RSP00140 Mean Expected Number 0.008 -strand -102 : -114 AATTATTTTTATa AC RSP00288 Mean Expected Number 0.007 -strand -188 : -193 TGGTCC AC RSP00949 Mean Expected Number 0.005 +strand -102 : -95 TAGTCAAC AC RSP01004 Mean Expected Number 0.000 -strand -141 : -150 ACTTAAATGG AC RSP01301 Mean Expected Number 0.004 +strand -34 : -25 CTATAAATAC Totally 6 motifs of 6 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G12590 |PROD: the same as GENE |complement(7451001..7453085) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.33 C - 0.15 1 ttcgtctacg agagttcttt gttctaagtt ctgagttcag ggaagaaaga 51 agcggtgagg agaacaaggt agctagggtt ttagtttggg tttaatagac 101 aaacgaatta gggttttata aagggaacac atcaaagcct ctctctgact 151 cagaaggttt cagatatttT TTAAATAaaa aaaataaaat aatttccact 201 AAATTATCGG ATTCTCAGCT CTTCTCTCAG AATCTCAGAT CGTGTTTTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.001 -strand -6 : -19 AAATTATTTTATtT AC RSP00279 Mean Expected Number 0.003 +strand -93 : -85 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand -85 : -93 AAACCCTAA AC RSP01303 Mean Expected Number 0.006 -strand -84 : -93 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G12600 |PROD: the same as GENE |7453199..7454478 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.35 C - 0.22 1 tcgtcttctt cgtcttcgat cttctctggt gaagcaaaca aaacacgatc 51 tgagattctg agagaagagc tgagaatccg ataatttagt ggaaattatt 101 ttattttttt tatttaaaaa atatctgaaa ccttctgagt cagagagagg 151 ctttgatgtg ttcccttTAT AAAACcctaa ttcgtttgtc tattaaaccc 201 AAACTAAAAC CCTAGCTACC TTGTTCTCCT CACCGCTTCT TTCTTCCCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.001 +strand -108 : -95 AAATTATTTTATtT AC RSP00279 Mean Expected Number 0.001 -strand -21 : -29 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -29 : -21 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand -30 : -21 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G12890 |PROD: the same as GENE |7546375..7547569 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.28 C - 0.22 1 atttagtctg ttaccactac cagcctagct agtcactaat agtcactttg 51 gaactgagta gatatttgca tcttgagtta ccatggactc aaaagtccaa 101 aaagagaccc cgagtgaaaa tgctaccaac ttaataacaa agaagcattt 151 acagcggtca aaaagtatcT ATAAATGttt acacaacagt agtcataagc 201 ACTCAACACA AACTCTTTAC GAATACTTTT AAGTATGGCT TCTTCTTCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.001 -strand -77 : -88 AgCATTTTCACT AC RSP00331 Mean Expected Number 0.006 +strand -124 : -116 GTTACCATG AC RSP00503 Mean Expected Number 0.003 +strand -176 : -169 CTAGCTAG AC RSP00503 Mean Expected Number 0.003 -strand -169 : -176 CTAGCTAG AC RSP00962 Mean Expected Number 0.008 +strand -146 : -140 TGAGTAG Totally 5 motifs of 4 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G12960 |PROD: the same as GENE |7583269..7584627 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.29 C - 0.16 1 ataaaaacga ttagtctgat tgctagcata ctcacaacta tttggaaatg 51 agtaagatat tggcatctag agttactact atggagacaa aagtcgaata 101 aaagagacct cacgtgaaaa tgttacgagc tagtaactaa agcatttaca 151 ctaacggtaa aaaaagtatc TATAAATGtt tacacaaggt agtagtcatt 201 AGCACTCAAC TTAAACTCTT TTAGTAACAA TGGTTTCTTC TTCTTTAACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.003 -strand -107 : -117 aCTTTTGTCTC Totally 1 motifs of 1 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G13180 |PROD: the same as GENE |complement(7657192..7658193) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.24 C - 0.18 1 aggttgttgt cagagatctc tggtggatac aagaagacac aagtatgtca 51 aaagagtgta atgcgcacac gtcactgctt acgaaacaaa aacatgtctc 101 aaaataagac cgttgactcg acggccatgt ggctgtatgt caagtgatcc 151 aacaactata agtcTATAAA TGtggtccat atttttccct gcttttaatc 201 AAAAATTCAG AGGAAAAAAA ACACGATCGA GAAATGGAGA ATAATCCAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.008 -strand +9 : -2 TGAATTTtTGA AC RSP00073 Mean Expected Number 0.002 +strand -77 : -68 GCCAtGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -68 : -77 GCCACaTGGC AC RSP00110 Mean Expected Number 0.002 +strand -135 : -128 CACACGTC AC RSP00153 Mean Expected Number 0.002 -strand -69 : -78 CCACaTGGCC AC RSP00249 Mean Expected Number 0.001 +strand -94 : -86 AGACCGTTG AC RSP01258 Mean Expected Number 0.004 -strand -127 : -134 TGACGTGT AC RSP01654 Mean Expected Number 0.006 -strand -125 : -134 AGTGACGTGT Totally 8 motifs of 7 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G13230 |PROD: the same as GENE |complement(7675659..7676676) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.25 C - 0.27 1 aaggaaaaac agacgccaag gattgtgtca cacactaaca catctctaaa 51 tagcaaatta aaacttgaac catcggatgt cccgagtcaa cctccccact 101 atgccatcca aatcaaacca tgtgtcttct tcacatgcac ctcatctcct 151 atacattttc tcaattctct TATATATAct taaatccttc aaactcaact 201 AATTAACAAA CTAATCACAT TACTAATCAA CAGAAAGAAG AGGCCTAAGA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: myb family transcription factor |LOCUS: AT4G13640 |PROD: the same as GENE |complement(7936588..7938626) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.36 C - 0.18 1 cgaaaataat aactaaaaga aattttatct tactactttt tcaaaacata 51 tatgttattt ggaatttcaa tgcaaagagt acaaataacc aaaacataaa 101 ttctgctctc tctttttttt tttttgaaaa tatctaaata aatTCAATaa 151 tgcacaaaTA TAAACAcaaa atactatccg agtgttgtct tgtccaatct 201 ATCAACTCGT TTCTTCGCTG TCTTAGAAAT CCACAATATC TTTCTTCACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.005 +strand -130 : -124 TGCAAAG AC RSP00445 Mean Expected Number 0.002 -strand -83 : -92 AAAAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: auxin-responsive protein, putative |LOCUS: AT4G13790 |PROD: the same as GENE |complement(7999710..8000218) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.08 T - 0.32 C - 0.26 1 acatgcatgt aggacactca ttttttctca acaccccaac atttattaaa 51 ctacatcttc ctaaaatcca aacgctttaa ctaatctgtt tgtcaaaacc 101 atgtccttgt aggtcgcact cACAATtcgt agacatatta ttttcaataa 151 aacctttcta actccaccaa TATATATAga cccacatttc cctttggctc 201 ATAAACCAAA CTCAAAGCTT CTCTTATCAT CAAACAAGAT CAAGATATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.001 +strand -199 : -192 CATGCATG AC RSP00108 Mean Expected Number 0.001 -strand -192 : -199 CATGCATG AC RSP01012 Mean Expected Number 0.001 -strand -87 : -93 ACCTACA AC RSP01237 Mean Expected Number 0.006 -strand -20 : -29 gTCTATATAT AC RSP01237 Mean Expected Number 0.006 -strand -22 : -31 CTaTATATAT AC RSP01470 Mean Expected Number 0.005 +strand -200 : -191 aCATGCATGT AC RSP01470 Mean Expected Number 0.006 -strand -191 : -200 aCATGCATGT Totally 7 motifs of 4 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: rapid alkalinization factor (RALF) family protein |LOCUS: AT4G14020 |PROD: the same as GENE |complement(8095210..8095731) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.28 C - 0.16 1 ttatccaaaa taactaagaa gaaacatatt acgtccggcc ggtaaccttt 51 ttgaaaagga gaaaaaaaaa aagtatttgt tttcgatata atgaattatc 101 tttctagtta aaagtaaaaa agattcgctt aaacattaca tttacaagtt 151 acaaacacaa tcgttcacTA TAAATAaagg tgtagcccct actaataaat 201 ATATAACTCA AAGCATAAAG AAACATCAAT CATGGAGTAC TACACATTTA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: XTR7 |LOCUS: AT4G14130 |PROD: xyloglucan:xyloglucosyl transferase |complement(8137047..8138276) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.38 C - 0.21 1 aaaaaaccaa cttatatgag taatagaaac gatcctaata ttaggaattt 51 tagagatttt ctctcatctg tttcttaact tttcaatatt tttatttttt 101 aaaATTGTat gagtttctac taagaaacta ctgctggagt tggtcttagc 151 ttcccaatgc ttctccaccT ATATATAtgc atatctcctt cttaaaactc 201 ATCTCACACC AAAACACAAA GCTCTCATCT TCTTTTAGTT TCCAAACTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.001 +strand -116 : -105 AATATTTTTATT AC RSP00135 Mean Expected Number 0.007 +strand -116 : -105 AATATTTTTATt Totally 2 motifs of 2 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: IAA1 |LOCUS: AT4G14560 |PROD: |8361061..8361982 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.10 T - 0.28 C - 0.32 1 caaatcagga ccgttgaaaa taagaaagaa gccgcgtcca aaatctttgt 51 gtcccacctt tgtccccttg cctctaactt gcctcctcat gctccccgac 101 aacgtcataa ttcatatctc tctctctctc tcgttaaccc taatttcaaa 151 gcatctttcc ttaTATAAAT Ctctctctct ccctcaccat tacacaacac 201 ACACAAGCAT TTTCAAGGAT ATCAAATCAC AATCCCAAGA AGAGCAATAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.004 -strand -21 : -29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -23 : -31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -70 : -78 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -72 : -80 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -74 : -82 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -76 : -84 AGAGAGAGA AC RSP00865 Mean Expected Number 0.005 -strand -19 : -27 GGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -69 : -85 GAGAGAGAGAGAGAGAt AC RSP01304 Mean Expected Number 0.008 +strand -67 : -58 TtAACCCTAA AC RSP01600 Mean Expected Number 0.005 +strand -57 : -50 TTTCAAAG Totally 10 motifs of 5 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: iron-deficiency-responsive protein, putative |LOCUS: AT4G14710 |PROD: the same as GENE |complement(8424675..8426550) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +195 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.36 C - 0.23 1 ccaaagtgtt tcttactctc gactcgagtc ttactttgac accaccaaac 51 ttctcttctt ttgtccattt ttaacccagt ttttaacttt taactttgtt 101 aacttttttA CAATaattac cactctaact aacgtattta cattttctca 151 aacctcaaaa atgtGATAAA TAgtctgaaa cggatatatg tggaggcggc 201 ATTTCCCTCG CCGCACGCCG GCGGATGGAG GGTAGTTTAG TCTTTTAACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.006 +strand -6 : -1 GGCGGC AC RSP00750 Mean Expected Number 0.003 -strand -85 : -96 TTATTGTAAAAa AC RSP00807 Mean Expected Number 0.006 -strand -1 : -6 GCCGCC AC RSP01103 Mean Expected Number 0.005 +strand -51 : -44 AAACCTCA AC RSP01497 Mean Expected Number 0.002 +strand +17 : +26 GCCGgCGGAT Totally 5 motifs of 5 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G15490 |PROD: the same as GENE |complement(8852696..8854543) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +242 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.11 T - 0.32 C - 0.11 1 ctaaaatatt ttccattttt atttctgaaa atgggagcca atgttaataa 51 taattaaaaa aaaaatcaaa agtatctaaa acctagaaaa atatgatacc 101 attcaaATTG Taaaatatct aataattaaa agaatttttc ttttcagtaa 151 tttcatatgg gtcaaatcct agtaTATAAA CAaacataca taaaaagata 201 AAAAAAATAT TTCCCTTTAT AATTGATGGA AAGCACTGGA AAGGGATATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.010 +strand -41 : -35 GGTCAAA AC RSP00566 Mean Expected Number 0.009 +strand -33 : -24 CCTaGTATAT AC RSP01071 Mean Expected Number 0.010 +strand -20 : -11 CAAACaTACA Totally 3 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: integral membrane family protein |LOCUS: AT4G15630 |PROD: the same as GENE |8917428..8918850 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.35 C - 0.19 1 tttatataca caacgtattc acacttcgtt cccatacatt atccatatat 51 gtttttattt cgtaagctga gattcactct tgcgccacat aaacttaaaa 101 agccacgtaa acatcattac tatccacaac ttgatgtgtg ttaagtaaga 151 ctatttcaat ttttttttta aTATATATAt acggctctct actcacatct 201 AGAGCATGAG AAACTTTAAA GAAAAAACAA AAAGAACAAA ATTTGTTATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand -92 : -99 TACGTGGC AC RSP00051 Mean Expected Number 0.002 +strand -99 : -90 GCCACGTAaA AC RSP00247 Mean Expected Number 0.001 +strand -99 : -90 GCCACGTAAa AC RSP00333 Mean Expected Number 0.003 +strand -169 : -161 CCATACATT AC RSP01030 Mean Expected Number 0.010 +strand +9 : +16 AGAAACTT AC RSP01034 Mean Expected Number 0.002 -strand -93 : -99 ACGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glutaredoxin family protein |LOCUS: AT4G15680 |PROD: the same as GENE |8931650..8932293 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +161 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.34 C - 0.20 1 atagttttat tctttagctg caagtggtaa agagtcaaga acgtgtgagc 51 tcctcaaatt gtactcccac tatcttagtt ttcattattt tttaataggt 101 tctttatttt cgtgttataa agttgattcg ctgaaaagtg ctatctcaaa 151 ccgacatcaa gaaagcTATA TATAaaggac ccttagagac ccttcactac 201 ATCAAAAACA AACTCTAAGT CATCTCTTAT ATATCGTCAG CCAAAGACTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.008 +strand -137 : -131 CTCCCAC AC RSP00192 Mean Expected Number 0.002 +strand +6 : +17 aAACAAACTCTA AC RSP00522 Mean Expected Number 0.005 -strand -174 : -180 CCACTTG AC RSP00613 Mean Expected Number 0.008 +strand -45 : -38 ATCAAGAA AC RSP01237 Mean Expected Number 0.010 -strand -24 : -33 CTtTATATAT Totally 5 motifs of 5 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G15750 |PROD: the same as GENE |complement(8967555..8968602) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.24 C - 0.21 1 tacccaagag gagcaaaata agattagcag cttaaattaa ttgtgttgga 51 ttaaatgaaa cttgcactat gaatggcaaa aaagaggtta caatctagca 101 accacctcat aaaccctcat taatgagata ctgactcgtg aaCCAATcaa 151 atctcaagtt tcgtagTTTA AATAagtagt aaacacctcc tgatcaaagc 201 ATCACCACCA CCAAATATCA AACGCAAAAA CCTATTATCA AAAGAACTAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.006 +strand -99 : -90 CCACCTCATa AC RSP01755 Mean Expected Number 0.007 +strand -102 : -95 CAACCACC Totally 2 motifs of 2 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PRL1 |LOCUS: AT4G15900 |PROD: |9023743..9027681 |SUPPORT | 17 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.36 C - 0.17 1 atcttaatac atatcaatct aattactcat taaccatatt aagaaaatat 51 gtgtctttat tttttccttt taacataaag cttaaaaaga agatttgtag 101 ccagaaaaat taATTGTgtt catttccctt ttaaaagaat ttttcggcgc 151 aacaaaatcg tgaaattgaT ATAAATAaac tcgagattat taatataacc 201 CTTTTTCACT TCACTTCTCT TTCTCTCTAA ACCCTAAAAG AAGAACGATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +37 : +29 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +29 : +37 AAACCCTAA AC RSP00861 Mean Expected Number 0.003 -strand +24 : +16 AGAAAGAGA AC RSP01303 Mean Expected Number 0.007 +strand +28 : +37 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand +28 : +37 TaAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G16146 |PROD: the same as GENE |complement(9142445..9144588) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +218 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.34 C - 0.22 1 caatagccaa aagtcctatt aaactacatg agataatatt taacttcata 51 acttaccacc aagaaaatga aataaattaa gaaaatatct aaaaagctta 101 cacacgtgta tgttgccctt agcctaatgt gcctaactac tacgcacgtg 151 tggccgtatg atgtaTATAA ATAcatatac aagttttgct aaacgcatac 201 CTTTTTTTTT ATCTCACCGT CTTTTATTTC GTCTTCCTCA TCTTTCTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -58 : -49 CGCACGTGTg AC RSP00158 Mean Expected Number 0.009 -strand -114 : -124 TATTTtCTTAA AC RSP00524 Mean Expected Number 0.006 +strand -99 : -93 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -50 : -56 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -92 : -98 ACACGTG AC RSP00596 Mean Expected Number 0.009 -strand -47 : -52 GCCACA AC RSP01152 Mean Expected Number 0.000 -strand -49 : -58 CACACGTGCg AC RSP01256 Mean Expected Number 0.002 +strand -99 : -92 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -92 : -99 ACACGTGT Totally 9 motifs of 6 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycosyl hydrolase family 17 protein |LOCUS: AT4G16260 |PROD: the same as GENE |complement(9200025..9201544) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.34 C - 0.16 1 aaagatattc tcttttgcat ataagatttg ataaattgaa cgcatatttg 51 cactcaagct aacgttatgt acttgattac ttgacccgac taatgactta 101 ttgactttga ttaataaaca aagatattag ccactccatt ctacattata 151 tacaatctat acgcatcTAT ATATAtctac taaaaaaatt gtaagtacat 201 ACATATCAAT GTTAATTTGT ATATAAGGAG CTAAGAACAA ACCCAATTAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00597 Mean Expected Number 0.001 +strand +11 : +22 GTTAATTTGTaT AC RSP00961 Mean Expected Number 0.004 -strand -182 : -189 TGCAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATTPS03 |LOCUS: AT4G16740 |PROD: terpene synthase/cyclase family protein |9407790..9410899 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.29 C - 0.16 1 ccattacttc tccaagtttt tttgttgtgt gggaataata cttctccaag 51 atatttaaga aaacgcaaat gcatggtcat tgaattatat agcgagaaaa 101 cgtcaaaaac taaactgatt aaaacagata ttcttttagt aaaacagaaa 151 aaataaaaat atcttcaTAT ATATAacctg tggtccgaga cccaaacctt 201 AAATCAGTAT AAAATATCAT AGCGGAGTCT AAAGAAGAGT TCATCCAATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01094 Mean Expected Number 0.003 -strand +51 : +40 TAATTGGATgAA AC RSP01127 Mean Expected Number 0.004 +strand +5 : +23 CAGT-- ** bp --AGCG AC RSP01167 Mean Expected Number 0.007 -strand -144 : -152 TAAATATCT Totally 3 motifs of 3 different REs have been found Description of REs found 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: arabinogalactan-protein family |LOCUS: AT4G16980 |PROD: the same as GENE |9556997..9557831 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.08 T - 0.36 C - 0.24 1 ttccatatat attgactatt ctatctgtac ctacaatgag atttcaactt 51 tggagttttc atcttttttt tctttccaat ttgtggagga aaataaatca 101 gcatctcata cctatccatc gactgatacg tgtcacacAT TGTatccaac 151 gatccaaaat TATAAAACaa ataatctcta atatatatcc aaatagcaca 201 AAGAACCTTC ACTTTTCTCT CCCACTCTTT CTTTTACTAC TCTCACACAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.001 +strand -74 : -67 TACGTGTC AC RSP00405 Mean Expected Number 0.001 +strand -152 : -145 TTTGGAGT AC RSP01035 Mean Expected Number 0.004 +strand -73 : -67 ACGTGTC AC RSP01068 Mean Expected Number 0.007 -strand -64 : -72 TGTGACACG AC RSP01087 Mean Expected Number 0.004 +strand -176 : -169 CTGTACCT AC RSP01288 Mean Expected Number 0.002 +strand -75 : -68 ATACGTGT AC SP017556 Mean Expected Number 0.002 +strand -85 : -78 CCATCGAC Totally 7 motifs of 7 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATP-dependent Clp protease proteolytic subunit |LOCUS: AT4G17040 |PROD: the same as GENE |complement(9585724..9589381) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.35 C - 0.18 1 tgcagtggcc agtagattat ttatttggta gcctcatatt aaattatacg 51 ttttcgaaaa atgagaaatt cccggtttta cttcggtttg atttggttac 101 tattatagtc gaaaccggaa tattttcaga gaaaaaaaac tacaactatt 151 gggcctattt gttgagccCA TAAATAatgt tatgaagccc gatttgagac 201 AGATCGTTAT CGTTTCGGGG TCACAGGGAC TTTCACTCTT TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGAGA AC RSP00868 Mean Expected Number 0.008 +strand -164 : -153 TATTAaATTATA Totally 3 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CT-BMY |LOCUS: AT4G17090 |PROD: beta-amylase (CT-BMY) / 1 |complement(9604978..9607350) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.32 C - 0.23 1 ttaactaaaa catcttcctt tgtaactgat gtgacattta caatttttca 51 ttttgaggtg taagaaccgt gtgacaagtg aaaaggttaa aataagcaac 101 ctttgtgata ttttctctcc actttttgaa ATTGGgtctc caaaccacag 151 ccaatcaata ttcttTATAA ATAcaaacac acaaacagca tctttctctc 201 AAACACAAAC ATATCTTCTA TCAAACACCA ACAGCTCTAT TCTCTACCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.009 +strand +22 : +29 CAAACACC AC RSP00254 Mean Expected Number 0.004 -strand -115 : -121 CCTTTTC AC RSP00741 Mean Expected Number 0.002 +strand -120 : -109 AAAAGGTTAAAA AC RSP01136 Mean Expected Number 0.007 -strand -125 : -131 TGTCACA AC RSP01136 Mean Expected Number 0.007 -strand -165 : -171 TGTCACA AC RSP01520 Mean Expected Number 0.010 -strand -142 : -147 ACCTCA AC RSP01601 Mean Expected Number 0.004 -strand -118 : -125 TTTCACTT Totally 7 motifs of 6 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1371. Group TF: HBP-1a /AC: RSP01520//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Hex123-a /TF: HBP-1a 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: L-lactate dehydrogenase, putative |LOCUS: AT4G17260 |PROD: the same as GENE |9674005..9675456 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.12 T - 0.25 C - 0.18 1 accaaaacat gtttaaaatt agattcggac caaacaagtt gtcaattttt 51 agtacaaatc aaaggttcaa atgtcaataa ataatcatta cattttaaaa 101 tttcgaaata aaaggacaaa catgtaaaaa ccaaaaaagt gaagcactga 151 tatttgtcat ttctgccTAT AAAATgtaca cttcccactc acacggtcac 201 AGAAACCAAA TTCGAAGAAG AAACAGAGAA TCATCAAATC AAATCCCTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01598 Mean Expected Number 0.002 +strand -46 : -39 TGTCATTT Totally 1 motifs of 1 different REs have been found Description of REs found 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G17940 |PROD: the same as GENE |9965754..9966978 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.24 C - 0.19 1 agtcagctcg tagttgattc ttcccccttg acggtcatct catcggacgg 51 ttgagatcag ccaactttaa gtgtatcaca cggaaaaggg aaatgtagcg 101 cgagaaagtc aaaagatcca acggtcgata tgaaacaaaa gtcagataat 151 cgtacggtag aaacgaagcT ATATATAgca acaattggat tattcttatc 201 ATCATCACTC TCTGAGATCG AAGAGAAAGC AAAATCAAAG TTGTGATGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01708 Mean Expected Number 0.009 +strand -32 : -23 CTATATATAG AC RSP01708 Mean Expected Number 0.009 -strand -23 : -32 CTATATATAG Totally 2 motifs of 1 different REs have been found Description of REs found 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G18425 |PROD: the same as GENE |complement(10181345..10182151) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.32 C - 0.19 1 gtatcaaaat agagacgtaa aatataataa tatttataat cctctcttaa 51 ataaagaaga gtgtgcaaag aacatgcttc acttaaacaa agactttggt 101 ttggtctcaa aggttacttg caaggcataa gaaatgtgta aagcctcttt 151 tctctcgcct cgctctatTA TATATAcctc tactttagat ttcatcaatc 201 ATCATCATTC CTTCTTACAT CAAATCAATT CCTAAAATCA GAGAAAAACA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.002 +strand -51 : -41 TTCTCTCgCCT AC RSP01086 Mean Expected Number 0.009 -strand -180 : -189 TTTACGTcTC AC RSP01725 Mean Expected Number 0.001 +strand -190 : -179 AGAgACGTAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: NLM1 |LOCUS: AT4G19030 |PROD: |complement(10421543..10423498) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.36 C - 0.20 1 atccctgaaa attgaatttg agacctggta tagaatctcc acaaacatag 51 gaatttatta ttattaaaaa agctttatta acaatatatc atcttcttct 101 tttttTCAAT taataaactg gtaatattaa aatcgtcaaa gaagtctctc 151 tctcccccat gtttgccAAT AAATAggaga taatcgctac caaacttctc 201 ATTCTCACAA GTCATAAACA GTCGTTTATA GTTCAATCCT TTTCCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.004 +strand -188 : -178 TGAATTTGaGA AC RSP00864 Mean Expected Number 0.002 -strand -48 : -56 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -46 : -54 GGAGAGAGA Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G19430 |PROD: the same as GENE |complement(10598456..10599155) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.31 C - 0.18 1 aaagcaaaaa ttaatcgctt aagtttccac cctttaagat gtacccatca 51 aaaaaaaaaa atcaagatat ttaatttcgt tttagcaaat cttatgcaaa 101 cctctaatta gcaccttatt atacatacca tcatactaca catatttgtg 151 tatgtataga tgtgtgaaTA TAAATAtgtt aagtaaggag tgaaagagca 201 ATCCACAAAC CAATCACTTC ATAGTTCATA CCATATATCA ATTCTCTCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.007 +strand +8 : +17 AACCAATCaC AC RSP01167 Mean Expected Number 0.006 -strand -128 : -136 TAAATATCT AC RSP01686 Mean Expected Number 0.009 -strand -35 : -40 CACACA Totally 3 motifs of 3 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: IRT1 |LOCUS: AT4G19690 |PROD: similar to metal transporter |10707436..10709025 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.09 T - 0.27 C - 0.20 1 atcaacttaa taaaatctag ctaggtactt tcataattct atcattattc 51 cttttgaacg attaattact ttattttctc gtttcacact ggaagcaaac 101 gagtaatcaa ataaaatttc gtcatcatcg ACAATaaatg gcatgaaaac 151 aaccagcaca cattactaTA TAAACCgatt catctagtaa gtccaaagtc 201 ACACAAACAT TAAACAATCT AAACACACAA CAATCCAAAA GAAAAAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.005 -strand -145 : -151 CAAAAGG AC RSP00055 Mean Expected Number 0.006 -strand -161 : -172 AGAATTATgAAA AC RSP00503 Mean Expected Number 0.001 +strand -184 : -177 CTAGCTAG AC RSP00503 Mean Expected Number 0.001 -strand -177 : -184 CTAGCTAG AC RSP00681 Mean Expected Number 0.004 -strand -133 : -141 TAATTAATC Totally 5 motifs of 4 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: integral membrane family protein |LOCUS: AT4G20390 |PROD: the same as GENE |11007046..11008075 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.29 C - 0.24 1 tcttagcttt ggtagataag acttgtctta gagcaagtct tgaaatctgg 51 aaatctattt tgcagtaatc ttgtcacaac aaccataacc taatcagtca 101 gtaccctcca agaacattaa agttagatga tccgacaaaa cctctcaaca 151 agaccaaact ctttccaTAT AAATActctt taacactgac acaaagtttc 201 ATCACTTTCT CTTGATCACT CACTGCATCA ACAATGGCCA GAGAGAAGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.002 -strand -183 : -192 TAtCTACCAA Totally 1 motifs of 1 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: TUB9 |LOCUS: AT4G20890 |PROD: tubulin beta-9 chain (TUB9) |11182103..11184083 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.27 C - 0.16 1 ttaattaaca aaaatatcta aggaaagata tttgtttttg attcgctgta 51 taacagcaca taaaggaaac caaatcgaaa aactatcagg gtaatatcaa 101 aaaCCAATag aagtctaagg acgaaaatgc aaattatttg agaaactaga 151 gaaaaaagga ggtaaacTAT ATATAgccga ttactactct catttgtttt 201 TATACCCCTC AATCATAAAC AATAAACAGA GGGAGTCGCC AAATTTTCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.004 -strand -42 : -52 CCTTTTtTCTC AC RSP01093 Mean Expected Number 0.005 +strand -184 : -174 TCTAAGgAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: myb family transcription factor (MYB102) |LOCUS: AT4G21440 |PROD: the same as GENE |complement(11418257..11419771) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.33 C - 0.23 1 tatagctgcc acaaacgtaa aaataaaata aaaagcatcc ataataatgg 51 ataaaagcat cgtataaacg caaaatctat tagatttttg tttttatggg 101 acacgtatac caATTGAtaa acagaggacg gcaccgaacc attttgactt 151 ccctcttctt ctctcccTAT AAATActttg tacttcccct tacggaccct 201 ACGACCTTTT GTTTCTCTCT TCTCTATTAA TACTATAGTT TTCCTCAAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.003 +strand -101 : -92 GACACGTAtA AC RSP00070 Mean Expected Number 0.002 -strand -94 : -101 TACGTGTC AC RSP00163 Mean Expected Number 0.004 +strand +5 : +15 CCTTTTGTtTC AC RSP00284 Mean Expected Number 0.003 -strand -70 : -75 CCGTCC AC RSP00653 Mean Expected Number 0.006 +strand +13 : +23 TTCTCTCTtCT AC RSP00888 Mean Expected Number 0.004 -strand -112 : -120 AAAAATCTA AC RSP01017 Mean Expected Number 0.009 -strand +16 : +9 AGAAACAA AC RSP01035 Mean Expected Number 0.006 -strand -95 : -101 ACGTGTC AC RSP01086 Mean Expected Number 0.005 -strand -180 : -189 TTTACGTTTg AC RSP01288 Mean Expected Number 0.006 -strand -93 : -100 ATACGTGT AC RSP01296 Mean Expected Number 0.007 +strand -34 : -26 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -34 : -25 CTATAAATAC Totally 12 motifs of 12 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G21780 |PROD: the same as GENE |11567142..11567711 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.29 C - 0.15 1 atattacgtc taaaatgttg atggaccgat cctagtagtc ttttttatta 51 gaaaaatata aaagttaaca gtgagattat atttgaacat aaataatctt 101 aaatacagta aaaggaagaa aatagataaa gaaatgggat gaccaaccaa 151 caaaagccat cacctatcaT ATAAAAAgat aatacatttt ctactacttt 201 AGCTTCAAGG ATCTTAATAA CACTTCGTTA CCACTTGATC AAGAGAAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.004 +strand +31 : +37 CCACTTG AC RSP00792 Mean Expected Number 0.009 +strand -58 : -49 CCAAcCAACA AC RSP01454 Mean Expected Number 0.009 +strand -59 : -53 ACCAACC Totally 3 motifs of 3 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G21840 |PROD: the same as GENE |complement(11587098..11588283) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.39 C - 0.17 1 aaaaatgtat tcatatcgtg atacaaggaa atgtatatta taaacacatt 51 caaaagtcca caagcactac ctcattgcgt ttgctgttac ctaaattaat 101 tattatttgt ttagtatagt tttcttggAC AATtcttctg cttctttgaa 151 aaatattctt gtctatgtct attTATAAAT Gttgaatcac aattaaactt 201 AAACCGAGTC TTTCGTACAA AACTTCAAAC ATAAGCTAAT TTCTTCCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.010 -strand -50 : -57 TTTCAAAG AC RSP01640 Mean Expected Number 0.007 +strand -38 : -29 CTATGTCTaT AC RSP01641 Mean Expected Number 0.007 +strand -44 : -35 TCTTGTCTAT Totally 3 motifs of 3 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G21870 |PROD: the same as GENE |complement(11603582..11604343) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.33 C - 0.17 1 ctcataaatc aatcttctcc ccaccctatt atcgtctttt caagtgattt 51 gtacttaatg tttcatttat tatcgacttt caagtttttt atattttcag 101 ggttaaagat caacttttca agtttagaca gcaacttgct caaatggttc 151 atgtggggtc atttttaacT ATAAATAgaa acccaaaaat caatcaatcc 201 ACAAGAACAA CTGAAAAAAG GAAAAGAAAG AAATCTATAA AAAAAAATGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.008 +strand -35 : -20 TaACTATAAATAGAAA AC RSP00085 Mean Expected Number 0.008 -strand -20 : -35 TTTCTATTTATAGTtA AC RSP00530 Mean Expected Number 0.004 +strand -42 : -31 TCaTTTTTAACT AC RSP00669 Mean Expected Number 0.001 -strand -102 : -115 TGAaAATATAAAAA AC RSP00860 Mean Expected Number 0.004 +strand +25 : +33 AGAAAGAAA Totally 5 motifs of 4 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G22212 |PROD: the same as GENE |11753998..11754700 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.30 C - 0.15 1 taaattacta aaaaaggtaa acttggataa tcattttatt gtaaagatat 51 tgacaatttg acataaagta ttttgatcta tgtacccatt ccaatatata 101 aaATTGCata gtggtttttt cttacaaaaa aaaaagagta acatctagat 151 gccctttccc ttggagtgcT ATAAATTcag actccttccc taaataaatc 201 ACAAAGCGAG AAAGAAAGAC GAACTGATCA GCAATGGGAA GCTTAAGGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.005 +strand -196 : -181 TTACtAAAAAAGGTAA AC RSP00080 Mean Expected Number 0.005 -strand -181 : -196 TTACCTTTTTTaGTAA AC RSP00085 Mean Expected Number 0.007 +strand -196 : -181 TTACTAAAAAaGGTAA AC RSP00085 Mean Expected Number 0.007 -strand -181 : -196 TTACCtTTTTTAGTAA AC RSP00860 Mean Expected Number 0.009 +strand +9 : +17 AGAAAGAAA AC RSP01033 Mean Expected Number 0.008 -strand -184 : -193 CCTTTTTTAG AC RSP01205 Mean Expected Number 0.008 -strand -184 : -193 CCTTTTTTAG Totally 7 motifs of 5 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SWIB complex BAF60b domain-containing protein |LOCUS: AT4G22360 |PROD: the same as GENE |11807672..11810129 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.21 T - 0.20 C - 0.17 1 gcgaagaagt aaaaaagcaa atagattagc caaaatacga caacaccctc 51 tacctacaag ccatagatac catgactcat aagggcaaca ccgacatttg 101 tcatcatttg ataaatctaa ccaaccctga agggcatatt cgtctttcca 151 aatagtTATA AAGAgacaga gacgaagaag gagagagaga aagagacaag 201 ATTAGAGAAG AGGATAAGAG AGAGAAAGAT ATAGAGAATT TGTTGTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 +strand -135 : -127 GATACCATG AC RSP00664 Mean Expected Number 0.001 -strand -121 : -129 ATGAGTCAT AC RSP00864 Mean Expected Number 0.006 +strand -19 : -11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand +17 : +25 AGAGAGAGA AC RSP00865 Mean Expected Number 0.003 +strand -21 : -13 GGAGAGAGA AC RSP00950 Mean Expected Number 0.001 +strand -84 : -74 CTaACCAACCC AC RSP01083 Mean Expected Number 0.000 +strand -85 : -74 TCTaACCAACCC AC RSP01278 Mean Expected Number 0.002 +strand -129 : -121 ATGACTCAT AC RSP01278 Mean Expected Number 0.002 -strand -121 : -129 ATGAGTCAT AC RSP01641 Mean Expected Number 0.002 -strand +1 : -9 TCTTGTCTCT Totally 10 motifs of 8 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: MYB85 |LOCUS: AT4G22680 |PROD: myb family transcription factor (MYB85) |complement(11922351..11924227) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.35 C - 0.14 1 gtgttaccaa tcgaaccatg tatatatata taaccgttac tagttaaaat 51 gctttgccat aatgccacta gaatttttaa taaaagttac taaaacaatt 101 tcgaaaatat taagatgtaa agttattttt tcctgaaacc aATTGTgggg 151 gaaaggtgtg agaaggtTAT ATATAggtgg gtgagctttg gtaagctttt 201 GACATAACTT GCAAGCTGTT GAGATTTTCC ATCCTCGATA ACTTTATTCT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: zinc finger (DHHC type) family protein |LOCUS: AT4G22750 |PROD: the same as GENE |complement(11949197..11951402) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.11 T - 0.33 C - 0.14 1 aaaaaattat aattcttaaa attatcacaa agaaaagtta taattcttaa 51 aatttaacag agtataataa aaagcctcag aaataaatat attaattttt 101 gaacaaagaa aaaaggataa ttatccatga aaacaaaaaa ATTGTcagct 151 cgatttcatc gaaattTATA AACTttattc ctcaattcaa tttggggttt 201 GCTTCATTTT TTTCTCCGAC CAAACAAGTT CCGGGTGTTT TGAAAGAACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00521 Mean Expected Number 0.001 -strand +38 : +32 ACACCCG AC RSP00680 Mean Expected Number 0.008 +strand -146 : -137 TAACAGAGTa Totally 2 motifs of 2 different REs have been found Description of REs found 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: zinc finger (AN1-like) family protein |LOCUS: AT4G22820 |PROD: the same as GENE |complement(11987720..11989012) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +600 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.31 C - 0.18 1 aaaacagtgc cattattatt ccgtttagct gctcgatgat aaattataac 51 cgtcagatta ggtcagccaa aagaatcgca cggttaagat tacgaaagtg 101 tACAATaagg aggtgtagaa gaacacaact taaaaaaagt gaaaaccgta 151 gcgtgactca taccaTATAA ATAtatacac atgtatgttc ctccatagtt 201 ACGTGTTTCT GTTTTTCTCT AATTTTTCTC TTGTTGTTCT CGATTAACGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -67 : -56 AAAAAGTgAAAA AC RSP00501 Mean Expected Number 0.004 -strand -166 : -172 CGAGCAG AC RSP01261 Mean Expected Number 0.004 +strand -2 : +6 TTACGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PIP1;5/PIP1D |LOCUS: AT4G23400 |PROD: |12220753..12222380 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.35 C - 0.12 1 taatttagtc taaattcact aatttatttt ctataattag taattaacta 51 tatttattta tttacacatt ttctgataat ttagaaattt gcatgaataa 101 caaatataag attttggaaa ttagtagcaa atttaattaa taattatttt 151 tgcctaaatg aaccaaacTA TAAAACctcc acatacacca gtcatcaaat 201 TTACAGAGAC AACAAACTAA AGTTGGTGGT GATAGAGTGA GAGAGAAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.001 +strand -173 : -158 TTTCTATAATTAGTAA AC RSP00085 Mean Expected Number 0.001 -strand -158 : -173 TTACTAATTATAGAAA AC RSP00107 Mean Expected Number 0.007 -strand -106 : -112 CATGCAA AC RSP00985 Mean Expected Number 0.007 -strand -32 : -41 AGTTtGGTTC AC RSP01104 Mean Expected Number 0.001 +strand -28 : -21 AAACCTCC AC RSP01641 Mean Expected Number 0.004 -strand +14 : +5 TgTTGTCTCT Totally 6 motifs of 5 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G23690 |PROD: the same as GENE |complement(12338881..12339757) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.31 C - 0.23 1 agttaccacc aaccccgctt ccgcatggtc gttaaacctt atgatctttc 51 taatttatat cttaaatata aatcggcaaa acatcaacaa cccattagat 101 atgtccctca aactttgaaa acgattatcc aaataaatta tttattaaaa 151 caagtgaata atacttctaT ATAAATGggt ttaagcctcc ttcattaaac 201 ACATCTCACA ACTCACTAAT CTCTAGCTAA CCATGGCATT TCTAGTAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00078 Mean Expected Number 0.001 +strand -195 : -184 CCACCAACCCCg AC RSP00145 Mean Expected Number 0.007 -strand -20 : -25 AACCCA AC RSP00357 Mean Expected Number 0.010 +strand +9 : +16 CAACTCAC AC RSP00881 Mean Expected Number 0.001 +strand -118 : -109 ATCAACAACC AC RSP01600 Mean Expected Number 0.008 -strand -81 : -88 TTTCAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown 141. Group TF: SEF3 /AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 2 /TF: SEF3 ||Identical REs AC: RSP00338 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: nucleoside diphosphate kinase 4 (NDK4) |LOCUS: AT4G23900 |PROD: the same as GENE |12424465..12426536 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.33 C - 0.19 1 ggttacaata tttttggttt acttctttta gctgctaaag acattggaat 51 atattcgttt cttgaatagg caataattct agttggaaaa caaaagtgat 101 tagaaagGCA ATaaatcctg agcctttaag tccttgtctg atccgacccg 151 atcaaaacat gttggTATAA AATcttccaa taggttcaca tttttgaggt 201 CCCTGTTTGC ACATCACTCT TCTCAGTCCT CACGCATCGT ATCAGAGAAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G24380 |PROD: the same as GENE |12612545..12614027 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.24 T - 0.22 C - 0.16 1 aaaaattgcc aaccaatcag tttggcccaa taagaaaagg aagaaaacct 51 gaatttcact taatctatcg gccctttttt ggtatttccc atgtgcgata 101 aatttatacg atcaaatgtg aaccacgatg gttcctggaa gaaggaagag 151 atttgcagca acagagcgtT ATAAAAAggc gaagcaagag ggaagacaac 201 AGATAACAAA TTGTGAAGAA TGGGAAGCGA AGGAAGATCG ATTGCGAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.001 +strand -128 : -119 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.001 +strand -128 : -119 CCTTTTTTGG AC RSP01509 Mean Expected Number 0.001 +strand -189 : -181 ACCAATCAG AC RSP01601 Mean Expected Number 0.001 +strand -147 : -140 TTTCACTT Totally 4 motifs of 4 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G24440 |PROD: the same as GENE |12633190..12634768 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +280 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.20 1 tttagtcaca ttattgtata cgcaattttg tattgcgggt tactttacta 51 ataaaaaaaa agacattata tgggccttgt gttgggcctt ctttctaatc 101 tcagatttga ctttattaca aacgaaaggg taagaatgta atttttcgcc 151 gactcgatct atcgctgccT ATATATAcag ttacctgcaa aatctagggt 201 ATAAAAGCCC CTAATTTTTT CTCCGCCCAA GAGACAAAAA TCCTTCGCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.008 +strand -145 : -136 AAAAAAGAcA AC RSP01237 Mean Expected Number 0.009 -strand -21 : -30 CTgTATATAT AC RSP01641 Mean Expected Number 0.003 -strand +39 : +30 TtTTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: pectate lyase family protein |LOCUS: AT4G24780 |PROD: the same as GENE |complement(12770341..12772343) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.37 C - 0.22 1 caacaattag atttgagtaa cggatgtaac catattattt gttcctacct 51 cctaggcatt attatagtat aaggtttttt tttaactaaa gatgatttaa 101 aaaaaaaaaa gtgggaccta aaccttaaaa attCCAATaa caaatagtat 151 agaggtcctt tttctcttta TATAAACCcc caaaatttcc tcttctctgt 201 ATTCTCCACT CAATACTTAT TTCCTCTGTC TTCCTTCGCT TCCCTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00543 Mean Expected Number 0.007 +strand -147 : -141 AGGCATT Totally 1 motifs of 1 different REs have been found Description of REs found 519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SAE1A |LOCUS: AT4G24940 |PROD: SUMO activating enzyme 1a (SAE1a) |12823506..12826210 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.33 C - 0.16 1 agactaggtt tatgaattat gaccgtagaa catatgaaaa ctgtgtaaaa 51 ctattgtata atttatgtat taaattttgt attaatcaac tgatatgcgg 101 tcggaccgga tccaaccggc gatcgaaaca taccatttat attttttctt 151 tttctatttt actagaaata aAATAAATAg aaacctccgt tgcttttttg 201 GCAAACACTG TGAGAGAGTT GACCAAAATC GACCCAGTGG GAGGACTAGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.006 -strand +43 : +37 CTCCCAC AC RSP00467 Mean Expected Number 0.003 -strand +25 : +16 TGGTCAAcTC AC RSP00468 Mean Expected Number 0.001 -strand +26 : +16 TTGGTCAAcTC AC RSP00940 Mean Expected Number 0.005 -strand -171 : -180 TTCTACGGTc AC RSP01104 Mean Expected Number 0.002 +strand -20 : -13 AAACCTCC AC RSP01482 Mean Expected Number 0.001 +strand +16 : +26 GAgTTGACCAA AC RSP01604 Mean Expected Number 0.005 +strand -161 : -154 ACTGTGTA Totally 7 motifs of 7 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: AMY3 |LOCUS: AT4G25000 |PROD: alpha-amylase, putative / 1 |complement(12851979..12853855) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.20 1 tacttgactc attttagagc taggatcaga cagagtagat tttttgccat 51 aactccttgt aaatgtattc acatttcatt cccaagaaaa atagactgat 101 gaagaaatat atcagatatg acaaggccgt gtcgtttagg ttacgtaact 151 ctacaaggtt tagggtctca aTATAAACAc acaaagcaga tagaagaagc 201 AAACCATTCA CAATCAGACA ATGACATCTC TCCATACGTT ACTCTTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.009 +strand -42 : -36 TTTAGGG AC RSP00460 Mean Expected Number 0.005 -strand +30 : +21 GAgATGTCAT AC RSP00629 Mean Expected Number 0.010 -strand -157 : -164 AAAAATCT AC RSP00888 Mean Expected Number 0.003 -strand -157 : -165 AAAAATCTA Totally 4 motifs of 4 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: integral membrane family protein |LOCUS: AT4G25040 |PROD: the same as GENE |12868184..12869465 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.35 C - 0.21 1 tgaggaaaat aacaataaac agaaaaaatg aggtgtatgt acaaagattt 51 gttaccaaat ttaaagtatt caaacagaaa gtacccatct gtttaggcaa 101 aggattcgat catcaaacgt cctACAATat cttgttttgc gatctcaccc 151 acaaatttat ttccTATAAA TTctcttcct ctgtctgatc tcttctattc 201 AAGCCCACTT CTTTTCTCTT TCTCTTGTCT TCGTGGAGTT TTCGGATCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00280 Mean Expected Number 0.004 -strand +37 : +28 TCCACGaAGA AC RSP00861 Mean Expected Number 0.004 -strand +23 : +15 AGAAAGAGA AC RSP01692 Mean Expected Number 0.006 +strand -96 : -89 TTCGATCA Totally 3 motifs of 3 different REs have been found Description of REs found 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G25250 |PROD: the same as GENE |12934572..12935383 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.29 C - 0.16 1 tttagcaaat tatgacaatc ttctaataat tgtttacatg tcaaagcata 51 atgattagag agaaacgaga ctaacataga gatgtggtta gtgattggga 101 gagaaatgga ccaaacagaa tgagatgtca caaggtttCC AATaataaat 151 taataatcca atgtgtcTAT ATATAcatat acacataaac catagttcac 201 AATTTGCTAA AAGCTAGCAT TTTCTATTCT CTCTCAACTC CGAAAGTACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.007 +strand -175 : -165 aTAATTGTTTA AC RSP00231 Mean Expected Number 0.009 -strand -103 : -109 CCAATCA AC RSP00259 Mean Expected Number 0.009 +strand -116 : -110 TGGTTAG AC RSP00550 Mean Expected Number 0.004 -strand -9 : -19 TGGtTTATGTG AC RSP00953 Mean Expected Number 0.007 -strand -169 : -177 CAATTATTA Totally 5 motifs of 5 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G25760 |PROD: the same as GENE |13116085..13116847 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.06 T - 0.30 C - 0.24 1 ctccattatg gaagatgatt ccctaaaaaa taatttcgtt aatactcact 51 ctacaaagta caaataatga atactgactt ttttcataca ttccaaaaaa 101 atactgaaaa ctgaaccata cacaaatcca ttgcattaag aaACAATcca 151 tcccatacgt tcctcTATAA AACgcctctc acaacacaat ctcatctccc 201 ACCAATAAAT TAATTACTTT TTTAACAAAG AAAACTTTCA TTTCATTCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00235 Mean Expected Number 0.000 -strand -62 : -73 TTAATgCAATGG AC RSP01015 Mean Expected Number 0.007 -strand +44 : +35 gAAATGAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: integral membrane family protein |LOCUS: AT4G25830 |PROD: the same as GENE |13133645..13135033 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.33 C - 0.20 1 gctaatcata cattcaatgc caatggagaa gtccaactgt atttcatttc 51 aatcttactc atacaactat acaagtgatc tgcaaattgc cgcgtacata 101 tatgaataag aaaaatacat taaaatttta tatccacctg ccaaatcctt 151 tcaacgccaa accattcccc taTATAATTA tatatacaat tacaaatttt 201 ATGTTACAGT CTTCATTTAT TCGCGTAAAG ATTTCAAAAA GTAGTGAATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.003 +strand -112 : -103 GCCgCGTACA AC RSP01013 Mean Expected Number 0.003 +strand -181 : -172 CcAATGGAGA AC RSP01014 Mean Expected Number 0.010 -strand +19 : +10 tAAATGAAGA AC RSP01733 Mean Expected Number 0.006 +strand -111 : -106 CCGCGT Totally 4 motifs of 4 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: aldose 1-epimerase family protein |LOCUS: AT4G25900 |PROD: the same as GENE |13161388..13163607 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.39 C - 0.14 1 atataataaa atattttcat gtttaaaaat ctaaatatag ttgaatggac 51 tctttaacaa gaaagtaaat attggcgtct ataaggtcaa gagatgtggc 101 gtaatgacta cttttgagca aatcagtgga caaattaaga ctttCCAATc 151 tttcattggt caagtctaaa TATAAATGat tggatttcta agtttcattt 201 CCTGTTTTTA GGCTCACTCG TGGACTTTTT TTAATTTCTT TCCTTTGCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 +strand -44 : -35 TGGTCAAgTC AC RSP00468 Mean Expected Number 0.001 +strand -45 : -35 TTGGTCAAgTC AC RSP00888 Mean Expected Number 0.005 +strand -176 : -168 AAAAATCTA AC RSP01482 Mean Expected Number 0.001 -strand -35 : -45 GAcTTGACCAA AC RSP01678 Mean Expected Number 0.007 +strand -197 : -186 tAATAAAATATT Totally 5 motifs of 5 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G26130 |PROD: the same as GENE |complement(13240015..13241292) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.10 T - 0.25 C - 0.20 1 gttaagacca aaacatatgt actgtttaat ttctgacttt gttagaaaac 51 aatcaatata gaaagacaaa ttgataaata aaaccatatg aaaaaaaaac 101 aaagacccat acaacaaatc taacgcaagg gtcattaatg attaaccaag 151 acaaaaaata tctctaaTAT AAATAttatc cactacttca ttcttcactc 201 TACGACACAC AAAAACAACA ATGGAGCTAC TCACAAGCTT GACCAACTGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.004 +strand -2 : +8 TCTACGaCAC AC RSP00680 Mean Expected Number 0.003 -strand -157 : -166 TAACAaAGTC AC RSP00727 Mean Expected Number 0.003 +strand +37 : +43 GCTTGAC AC RSP01149 Mean Expected Number 0.001 -strand -31 : -43 ATATTAGaGATAT Totally 4 motifs of 4 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 1065. Group RE: C-DP BS1 /AC: RSP01149//OS: Cucumis sativus/GENE: POR/RE: C-DP BS1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: universal stress protein (USP) family protein |LOCUS: AT4G27320 |PROD: the same as GENE |complement(13678474..13680834) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.31 C - 0.24 1 atgggcctta atatcaaaac acacggccca ttataaaagt aaactgataa 51 gataaaacag ttccctatga ttcctcaata agcagctgct cagcacgttc 101 tcgtaatttt caacttcttg ACAATttaat acatccatta tccaaacaat 151 tagcaattaa ttacactTAT AAATTaattt gtaaactaat taaaactgac 201 AAACACGGCT CTCTCTTCTT CATCATCATC ATCATCTTCC TCTCGATCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01053 Mean Expected Number 0.001 +strand -155 : -147 GATAAGATA Totally 1 motifs of 1 different REs have been found Description of REs found 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: copper-binding protein-related |LOCUS: AT4G27590 |PROD: the same as GENE |13771191..13771891 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.29 C - 0.20 1 taacaaagag aatagtggtg acacacttta cactaaatcc aagtcactag 51 atcctaaaaa gcttataaca tgacgacttc aacaacatgc acctcatctc 101 ttctgcatga aacccaatca ctgtcgTCAA Tatatatatg cacacaccta 151 agttcgtgta tctctacTAT ATATAaaggt aagtgtgcat agtttgagtt 201 AGAAATTGGA ATTCGACCAA AATACATAGT TAAAGTATAA TGGGTGATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.005 +strand -112 : -103 gCACCTCATC AC RSP00869 Mean Expected Number 0.002 -strand -169 : -177 TGTAAAGTG Totally 2 motifs of 2 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G27657 |PROD: the same as GENE |13813050..13813522 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.29 C - 0.23 1 agcactgact tcgtaagtaa cagctcactt ttgtcttctt gccaacactc 51 tgactattat ccacaacgcg tgacacgtgg ctgttagttc ataaagccac 101 aaattaaaga aaccaaatac gtgtacgagt aacttctgga ccactggagc 151 ttaaagttat ggtctaTATA AACCctcgag tggtctggct tcagattttc 201 AACCACCATT CAATTTTCTA TAAAGAGATA ACAAACTTCA GAAACTTCTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -128 : -120 ACACGTGGC AC RSP00056 Mean Expected Number 0.003 -strand -120 : -129 GCCACgTGTC AC RSP00073 Mean Expected Number 0.002 +strand -129 : -120 GaCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -120 : -129 GCCACGTGtC AC RSP00175 Mean Expected Number 0.001 +strand -127 : -120 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -129 : -120 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -130 : -119 TGACACGTGGCt AC RSP00340 Mean Expected Number 0.003 -strand -120 : -129 gCCACGTGTC AC RSP00936 Mean Expected Number 0.000 -strand -119 : -130 aGCCACGTGTCA AC RSP01030 Mean Expected Number 0.008 +strand +40 : +47 AGAAACTT AC RSP01034 Mean Expected Number 0.005 +strand -126 : -120 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -128 : -121 ACACGTGG AC RSP01288 Mean Expected Number 0.004 +strand -84 : -77 ATACGTGT AC RSP01702 Mean Expected Number 0.006 -strand -76 : -85 tACACGTATT AC RSP01755 Mean Expected Number 0.005 +strand -1 : +7 CAACCACC Totally 15 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28025 |PROD: the same as GENE |complement(13935641..13937388) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.33 C - 0.18 1 cacttggttt agttagtccc ttgtcgtgta taatcaaatc acccataaaa 51 ggaactttag ttggataaga tttgggatgt tttctgtatt ttgtttttcc 101 ttggtcgtgg aaatacaaac gacgacgttt tgagtggcct ttgtttttca 151 tcctctagac caagtgtaTA TAAAACagag acgaaaaacg ttgcgaaaat 201 ACGAAAGGCT TAGAAATGGT GGTGACGTCT TTCTCTTCAG CGCCGCCTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.003 -strand -149 : -158 CCTTTTATGG AC RSP01654 Mean Expected Number 0.008 +strand +21 : +30 GGTGACGTCT Totally 2 motifs of 2 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28290 |PROD: the same as GENE |complement(14011875..14012589) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.35 C - 0.20 1 ttctagaaga taaatcattc tattcaaaaa cgtttaccaa tgatcttagc 51 tgtaattaac gcaattaaat catgcttaag gtatttagaa aagggtaaaa 101 cggtaacata ctttatcgat acataaATTG Gtcaactagc gtaatttaac 151 ttttgtcccc attgcgtaTA TAAACCgtcg actatcgaag ccaacacctc 201 AATTTTTCCC ACATTTTTCT CTCATCTGCC TACGGTTGCA GATTTTATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.006 -strand -107 : -113 CCTTTTC AC RSP00741 Mean Expected Number 0.002 +strand -112 : -101 AAAAGGgTAAAA AC RSP01740 Mean Expected Number 0.000 -strand -63 : -75 TAGTTGACCAATt Totally 3 motifs of 3 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1547. Group TF: WRKY11 /AC: RSP01740//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS2 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ANAC074 |LOCUS: AT4G28530 |PROD: no apical meristem (NAM) family protein |complement(14090495..14094782) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +173 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.05 T - 0.35 C - 0.27 1 ttcttgaaac ttcccaccat aactaactac atatattaca caaccatgga 51 cccaattaat cttacaatat tgtaagaaac tctaacttgc catcttacat 101 ccttagctac atgcatgatt tatattATTG Tatttccata tatcatataa 151 gctaatttcc cactaacTAT AAATAtatac ataattaaac ctatatatgt 201 ATCTACACAC ACCGATCTCC CTCTCCCTCT CCCTCTCCCT CTTTATCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.001 +strand -91 : -84 CATGCATG AC RSP00108 Mean Expected Number 0.001 -strand -84 : -91 CATGCATG AC RSP00192 Mean Expected Number 0.007 +strand -128 : -117 TAAgAAACTCTA AC RSP00327 Mean Expected Number 0.007 -strand -84 : -89 CATGCA AC RSP01463 Mean Expected Number 0.004 -strand -19 : -31 ATgTATATATTTA AC RSP01470 Mean Expected Number 0.004 -strand -83 : -92 TCATGCATGT Totally 6 motifs of 5 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 313. Group RE: RY /Group TF: ABI3 /AC: RSP00327//OS: Brassica napus /GENE: napA/RE: RY /TF: ABI3 ||Identical REs AC: RSP01650 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28703 |PROD: the same as GENE |14166275..14166928 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.11 T - 0.43 C - 0.20 1 taataatact tattaaatgg tgaaattttg gtttgtattc tccaaaattc 51 tgaaaatttc atagccatta ttggagtcat ctgcttttcc ttttttgttc 101 ttcatttttt tttcctagTC AATagagata ttttctcttt cttactgcat 151 cgatccatat cttgactgAA TAAATAcgtc aaaagaaagc attaacgatt 201 ACACACTCTC ATACTTATCT CCTCTTAGGT TTCTCATTTC TCTCGTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.005 -strand -79 : -88 TTGACTAGGA Totally 1 motifs of 1 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: transferase family protein |LOCUS: AT4G29250 |PROD: the same as GENE |14420695..14422287 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.27 C - 0.16 1 ctaccaattt atgtttaggg gttttcatga acccgaccat aacagaaaca 51 tgttttacgg gaccatgata attctacatt cccttagggg agggttgttt 101 agttcatggg aaaagtatgt gttgaaatat gtaaatacac accaacaaac 151 gcacatatca TATATATAtg gtatacaagc tcacatcaaa agtggattct 201 AACCAAAGAA TAATACAACG AAAAATGTTT GCTAAAGAGA AGACAATAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01093 Mean Expected Number 0.004 +strand -3 : +8 TCTAAcCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: acid phosphatase class B family protein |LOCUS: AT4G29270 |PROD: the same as GENE |complement(14423671..14424888) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.35 C - 0.17 1 atgacaattt gaacaataat tcattaaaat atggttatag tataattttt 51 ggaaatgttt tgatttacct ctattattac caaatcaaat tcagccagtg 101 aagacgttgt agttctcaac aaaaatcacg tgggagtgta aatacgacaa 151 taatgttcca tctttctata tTTTAAATTc gcgacctatc ttcttctttc 201 ATCCAATAGT TGAAAAACAG AAAAAGCCTC TCCAATGACT TTTTCTCGTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.001 -strand -65 : -71 CTCCCAC AC RSP00640 Mean Expected Number 0.001 +strand -75 : -68 TCACGTGG Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PRF2 |LOCUS: AT4G29350 |PROD: profilin 2 (PRO2) (PFN2) (PRF2) |14450035..14451383 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.38 C - 0.11 1 tttcacacaa aacattttga atttcatttg tatctacttt tttttttttt 51 ttggtatttc ttttagctgt ctttatcaaa ttcagtaaat aaataaaata 101 tgtattttaa tggaattttt tgcagtagaa attaaaaaag agtttttttt 151 tattggaagg ctaaatcgtg tTATTAATAa tttaagctca aaggttgtcc 201 AAGTCTACAA ACCAAAAGCA CGCTACAGAA GAAGAGGAAG AAGAAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.007 -strand -60 : -71 TCTTTTTTAAtT Totally 1 motifs of 1 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: amine oxidase family protein |LOCUS: AT4G29720 |PROD: the same as GENE |complement(14553321..14555173) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.27 C - 0.28 1 taacctaact ttgaagtatt ataataatta attatgacac tgtcaatcac 51 taattcatga ttaactaaaa attaatagat caaaaaccta aacttaaccg 101 atgATTGTaa ctaaaatctc tccacacgct taaggctcac acacacacac 151 acacagactc tccctTATAA ATGttgagcc aaagcaatct ctctccattc 201 ATTCACCTTC CTCCGTCCCC TTCCCCTAAT CCCCAAAACA CACAGATAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00250 Mean Expected Number 0.001 -strand -188 : -200 cAAAGTTAGGTTA AC RSP00442 Mean Expected Number 0.009 +strand -195 : -186 TAACTTTGaA AC RSP00778 Mean Expected Number 0.006 -strand +5 : -5 TGAATGAATG AC RSP00865 Mean Expected Number 0.002 -strand -5 : -13 GGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 243. Group TF: Myb26 /AC: RSP00250//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb2 /TF: Myb26 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29780 |PROD: the same as GENE |14579710..14581706 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.28 C - 0.25 1 cgctttatct aatcaaaaat aataataaaa taatctgcaa aaaagaaagt 51 caagtcaccg tcaaacccat cccgcttagc ttaccgcgtt cacaccttca 101 cgcgcttcct tcgtcctttg cgtctctctc tattttttta caaacacaga 151 caaataaacc tttttcaTAT ATATAtatcg tctgaaacca aaaccaaaac 201 CATAAAACTC AAAAATCTTT GGTCTTCAAA CTTCAAACAC TTGAGAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.003 +strand -84 : -78 TTTGCGT AC RSP00864 Mean Expected Number 0.002 -strand -70 : -78 AGAGAGAGA AC RSP01733 Mean Expected Number 0.009 +strand -117 : -112 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT4G30140 |PROD: the same as GENE |complement(14738393..14740682) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.07 T - 0.31 C - 0.23 1 ttagtaaaca taagtaaatt acatgacaat tcttcagctt aacaaaaaat 51 aataatatta ccaacacgtc cacctcaaat aaataatatt aaaagaaaaa 101 cctcttaatt catgcaaaAC AATttatata gttctccaag tctcccttga 151 ttcactcact gcctcatccT ATATATAgtc gcataatttt ctacttgtct 201 AAGCAAAATC CCCTCTAACC ATCAGACTTA CAAATCTAGT CCATATAATA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.005 +strand -66 : -57 TCCAaGTCTC AC RSP00068 Mean Expected Number 0.002 -strand -2 : -11 GACAaGTAGA AC RSP00535 Mean Expected Number 0.001 +strand -40 : -24 GCCT-- +7 bp --TATATA AC RSP01093 Mean Expected Number 0.003 +strand -3 : +8 TCTAAGCAAAa Totally 4 motifs of 4 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATXTH18 |LOCUS: AT4G30280 |PROD: xyloglucan:xyloglucosyl transferase |complement(14825814..14827053) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.33 C - 0.21 1 ttattttctc tgttttgtaa caataaacga gtaatgaaat tatattttat 51 tggtttcaat ttgtaacaac cagcaagagg tctaatgagc caactagaat 101 acagcccacg ataaataatc aaacccatga aacttccttc tctctttcct 151 ttgccatttc caaacactaT ATAAACTcat gtcgcttaac tcaatttttc 201 ATCAACAATA CATTTGAGAT ATCAATACAC CTCCAAAATA TATACAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01326 Mean Expected Number 0.010 -strand +19 : +13 TCTCAAA AC RSP01233 Mean Expected Number 0.008 +strand -129 : -123 AGCAAGA AC RSP01678 Mean Expected Number 0.005 -strand -149 : -160 CAATAAAATATa Totally 3 motifs of 3 different REs have been found Description of REs found 1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC: RSP01326 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: senescence-associated family protein |LOCUS: AT4G30430 |PROD: the same as GENE |complement(14878789..14880337) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.31 C - 0.24 1 aatagcatta ctcacaagtc acaagttcaa aacgtctgac tgaaacagaa 51 acaagccttt gttgaagtct tgaagaagag acattagtac tcgtcgtata 101 gccataaaag gtaatatacg aaatttcttc gctaatctct tcaccttcct 151 ctacgcgttt cactttcact tTATAAATCc aaatctccct tcgaaaacat 201 AATCACACAA ATCCCTTTTT TGGTTTCTCC AAATCTTCAA ATCTTCTTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.003 +strand -102 : -87 TaGCCATAAAAGGTAA AC RSP00080 Mean Expected Number 0.003 -strand -87 : -102 TTACCTTTTATGGCtA AC RSP01017 Mean Expected Number 0.009 +strand -154 : -147 AGAAACAA AC RSP01033 Mean Expected Number 0.004 +strand +14 : +23 CCTTTTTTGG AC RSP01033 Mean Expected Number 0.004 -strand -90 : -99 CCTTTTATGG AC RSP01214 Mean Expected Number 0.001 +strand +14 : +23 CCTTTTTTGG Totally 6 motifs of 4 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GAE1 |LOCUS: AT4G30440 |PROD: NAD-dependent epimerase/dehydratase family protein |complement(14881861..14883486) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +215 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.37 C - 0.18 1 aaaactcctt aaattgcggt aaattggtga aaaaagattg cggtagattt 51 agcatttatc cagtttttca atacataatt agtagattct tttttttact 101 ttctctaaac aaataattag gATTGTtttt ttttgtcaac aaatattaat 151 tttgtTATAA AAGcaaaaaa aaaatgacaa tctggcaatc aaattaacgc 201 GTCTCCTTGT CCCCTAACCC CACCTGTATA TATACTTCTC CGTCTCTTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00887 Mean Expected Number 0.004 -strand -110 : -118 AAGAATCTA AC RSP01499 Mean Expected Number 0.004 +strand +36 : +45 TTCtCCGTCT AC RSP01598 Mean Expected Number 0.007 -strand -22 : -29 TGTCATTT AC RSP01639 Mean Expected Number 0.009 -strand -19 : -28 GATTGTCATT Totally 4 motifs of 4 different REs have been found Description of REs found 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycine-rich protein |LOCUS: AT4G30450 |PROD: the same as GENE |complement(14886033..14886681) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.32 C - 0.19 1 acctatctaa ttaagaaaaa aacatgcata tatacttaat tattcactct 51 tcaatgcata tccattataa tttctctaaa ctataataaa acgaaatatg 101 ataaatgtac gtaggttaaa ttaattatgg tgatatacac gtagcggctc 151 acacaatccc aaagcttcTA TAAATAcacg aacatgttat tcatttttgt 201 ACCTAATCAA GTTACACTAT AAACTCAAAC ACATCTATCG GCAAGTCTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.001 +strand -65 : -56 TaCACGTAGC AC RSP00483 Mean Expected Number 0.008 -strand -53 : -57 GCCGC AC RSP01260 Mean Expected Number 0.002 -strand -57 : -64 CTACGTGT AC RSP01301 Mean Expected Number 0.003 +strand -33 : -24 CTATAAATAC Totally 4 motifs of 4 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: plastocyanin-like domain-containing protein |LOCUS: AT4G30590 |PROD: the same as GENE |complement(14935629..14936568) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.24 C - 0.21 1 tttttttaat tttaaactga aacatattgt ttttgtaata aaaagtaaac 51 aaaaacggac attaatttag caaatcagag agagattact cttgaatact 101 cggttaggaa atcccaaacc tagctccgaa cccccaagaa acaagattta 151 gctccaaacc acaatgacta TATAAACAcc acatcaccat ctcatatttt 201 ATTCACAGAG AAAACAAAAA CAAACGAGAG ACAAAACTCA ATCCAAAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand -124 : -116 AGAGAGAGA AC RSP00915 Mean Expected Number 0.007 -strand -13 : -22 GGTGATGTGG AC RSP01480 Mean Expected Number 0.010 +strand -6 : +2 TATTTTAT Totally 3 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30670 |PROD: the same as GENE |complement(14957371..14957968) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.31 C - 0.15 1 tggatcgtgt caaaatgtct cttgtgtaag taagaagttt tccaaaagaa 51 aaaacagtta tgagctgtct tgatgattat atcactgcct agttgttaat 101 taaggaagag ctcatctgtt tggttgcgtg cacgaagaag agagtatggt 151 acaactactt tcacacaaat cTATAAATAc acagacacac tcataagttc 201 AAAAAACACA AGATAAATAT ATTTTCTATT CAATTTTGTT TAAAGAATAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.003 +strand -152 : -141 AAAAAACaGTTA AC RSP01296 Mean Expected Number 0.008 +strand -30 : -22 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -30 : -21 CTATAAATAC AC RSP01642 Mean Expected Number 0.004 +strand -188 : -179 AAATGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CYP83B1 |LOCUS: AT4G31500 |PROD: cytochrome P450 83B1 (CYP83B1) |complement(15273477..15275316) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.28 C - 0.22 1 tcttcatcga tctcgctttc agtattattg tgtaacccaa gttacatttt 51 ttaattccaa aaaccagtag tccacctact aacatcacgt tttaaaaaca 101 agggaaaatt ctgtcacctg tcaaaaaatc caaaacaaac caaCCAATaa 151 aactttttgt cttgctaTAT AAACCacatc atcattcaaa gtagaaaagt 201 ATCCGAACAC AAAGACTTAA GTAAGTCAAA CAGAAAAAAA TGGATCTCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.005 -strand -78 : -85 TGACAGGT AC RSP00847 Mean Expected Number 0.009 +strand -27 : -18 CCACaTCATC AC RSP00914 Mean Expected Number 0.009 -strand -18 : -27 GATGATGTGG AC RSP00915 Mean Expected Number 0.008 -strand -18 : -27 GATGATGTGG AC RSP01233 Mean Expected Number 0.007 -strand -35 : -41 AGCAAGA Totally 5 motifs of 5 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G32340 |PROD: the same as GENE |complement(15612597..15614259) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.32 C - 0.17 1 tatctaaagt tagagattaa cttactattc ttgtattacg ataacgtttt 51 gaatgaacat gtaatgatgc aagggtgtaa ccaaaaatga taaaactttg 101 gggTCAATtt gataatattg actaatagtg tggggcttga caagaaccgg 151 aaactccatg atatttttgc agTCTAAATA tcttttcatc tctcttctct 201 TCCTCCACTG AAATATTCCC CACAAGAACT AACAATGATA ATGAGAAGCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00727 Mean Expected Number 0.007 +strand -66 : -60 GCTTGAC AC RSP01000 Mean Expected Number 0.003 +strand +15 : +24 ATtCCCCACA AC RSP01000 Mean Expected Number 0.002 -strand -63 : -72 AaGCCCCACA AC RSP01167 Mean Expected Number 0.006 +strand -26 : -18 TAAATATCT Totally 4 motifs of 3 different REs have been found Description of REs found 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G32470 |PROD: the same as GENE |complement(15669225..15671200) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.30 C - 0.19 1 gcttcttgtg aattattaag acaagttagt ttataatcta aatacaagtt 51 atcactgggc cttaaatgac gctacagctg agcgacttaa ggcccaaata 101 ttactacgtg agtacgtgac ctatatatgt caaaaatacg tgaagcttag 151 atgggccact taaggcccaA ATAAATAcgt gaagcagagc ttatgtgatt 201 ATTTCCTCTC TCAGGTCAGG AGTTGTTGTA GACACAGCAG CTTGGTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.004 +strand -90 : -81 AGTACGTGaC AC RSP00247 Mean Expected Number 0.004 +strand -46 : -37 GCCACtTAAG AC RSP00572 Mean Expected Number 0.007 +strand -76 : -69 ATATGTCA AC RSP00863 Mean Expected Number 0.001 -strand +11 : +3 AGAGAGGAA Totally 4 motifs of 4 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein, predicted protein |LOCUS: AT4G32930 |PROD: the same as GENE |15898840..15900824 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.22 T - 0.28 C - 0.13 1 acaggacata aaacaactag atgtaaataa cttgggctca attgctttca 51 aattgggctt tttcatatgt gtgcttttgg actaaaagac tcataggtca 101 aaaaaattaa acgggctgag accaaatatt tggtttataa cgaaatatga 151 gttttttggg gggccattct GATAAATAat aagaagaaga agaatcgcgt 201 CTGCAAAGCT TTAGTGCTTC ATAGAGCAAA GGAGAAAAAA AATGGTGAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01469 Mean Expected Number 0.006 +strand -138 : -129 TCAtATGTGT Totally 1 motifs of 1 different REs have been found Description of REs found 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33560 |PROD: the same as GENE |16135403..16135917 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.31 C - 0.22 1 ataatccatt ttttatctct attttaacct cgtagttaga taattaattt 51 atgaccaaaa agaaagtaaa taactaaaat gagaaaatga aaaccacgag 101 ctcccaaatt tcctgcggct tctttagcct cttgtttcgt ttatgtacca 151 ctttctcgac tccacacttT ATAAACCaaa tcctccacga aactccaaac 201 ACATTGTCCA AAGATCAATA CACACTGTTT TAAGAAGAAT TTGAAAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01210 Mean Expected Number 0.009 +strand +25 : +34 CTGTTTTAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33660 |PROD: the same as GENE |complement(16167292..16167954) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.37 C - 0.20 1 accgaagcag attcctatac ttttgtcaac actttttaag tgttttgcgt 51 ttccaatgta ctttgaagat tattctcaaa actccataaa attcttactg 101 aaacagagaa tttttttttt taattttaat ctaagaatta tcttgaagct 151 gtgttctttg gcaaaTATAA ATAcacgtcg actaggacaa cacttgcgct 201 CTAAAGATTG CAAATCCGTG TTCTATCTCT CTCAACAATT ATTTCCCCTG 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: pathogenesis-related protein, putative |LOCUS: AT4G33720 |PROD: the same as GENE |16182755..16183536 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.33 C - 0.16 1 tatgatcaga atttcactaa acacgtcaat tactatggcg tgtagctatg 51 aaataattac acttaatcaa ttggccattt ggcctactat attagaccgc 101 agatgtatac gttttctaac tataaatttg taaattaaat ttttgtttgt 151 ggaaaaaaaa ctaaacatTA TAAAAAtgta ttcgaagata caaaactact 201 ATATATATAA CGTGTTCAAT CCTCACTTCA AAAACCCACA AAAACTTTAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00525 Mean Expected Number 0.009 -strand -95 : -101 ACATCTG AC RSP00710 Mean Expected Number 0.005 -strand -142 : -154 TAATTATTTCaTA AC RSP01258 Mean Expected Number 0.002 -strand -173 : -180 TGACGTGT AC RSP01458 Mean Expected Number 0.009 -strand -66 : -78 ATTTAcAAATTTA Totally 4 motifs of 4 different REs have been found Description of REs found 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33800 |PROD: the same as GENE |complement(16210017..16211414) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.29 C - 0.12 1 cctaaagttt gaaaattaat aggcagaaga agtaggagcg atgagtcgat 51 gataataagt taaaataagt ttatactccg tacctattga agataaaacc 101 aaaaattgaa ataaataact taaACAATga aatagagaaa gaggggtata 151 gatgcatgtg ttagTATAAA TAttagatag agagaaagaa cataggtttt 201 AAGTCGATTT TTCACCCACA GTCTTTCTTT AAATCTTTCT CAACATAGCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.008 +strand +13 : +18 CACCCA AC RSP00999 Mean Expected Number 0.009 -strand -18 : -28 TCtCTATCTAA AC RSP01576 Mean Expected Number 0.008 +strand -126 : -121 ACTCCG Totally 3 motifs of 3 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1405. Group RE: ICEr2 /AC: RSP01576//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G34135 |PROD: the same as GENE |complement(16345285..16347137) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.29 C - 0.21 1 tagtttacaa gttacaaggt tttggttcca aaagaccttg aaaactgaca 51 ctactctggc acgttaagag agaaagtacc aaagaaacca aaactagaga 101 cgtatgcaac gacgtcagta tccgttaccc attaatcatc taaacccaaa 151 ttttggtgct ttatacgtTA TATATActcc acactcttgc aaccattatt 201 ATATATACAA CGAGGAAAAA TAGTACTATT TTCTACGAAC TTCAGAATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01031 Mean Expected Number 0.008 +strand +44 : +51 AGAATCTT Totally 1 motifs of 1 different REs have been found Description of REs found 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: D-3-phosphoglycerate dehydrogenase |LOCUS: AT4G34200 |PROD: the same as GENE |complement(16373850..16376626) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.29 C - 0.29 1 ttttttgttg gtttggcaat ttttccggta aactatgcaa attctattcg 51 ccgaaacatt ttgcagatca ctaaaccaaa ctgaatcaca cgcgcgagcc 101 aaatgcgcgt gagatttcat caccttcgtc aaaatactat cacatcacac 151 caaacccctg agccgacTAT AAAACctttt agatctctcc ctcgtgttat 201 AACTCCGCCA CCAACAATAT TTTTCTCTAC TCAATTCACT CACACTCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.007 +strand -113 : -107 ACACGCG Totally 1 motifs of 1 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 40S ribosomal protein S25, putative |LOCUS: AT4G34555 |PROD: the same as GENE |complement(16504235..16505477) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.31 C - 0.16 1 aagggatttg attggttggg gacttgggac tgtgactatc tgcttgagtt 51 ctatctcttc ttgtgtaact aacccaagta acaagcccag ttcaacatta 101 ttATTGTtcg atccaaacta ggcctaatct gaacagaaca aaagtatata 151 atttgagacg ttattaaact attTATTAAT Aattaaaata aattcccgtc 201 ATCAAAAAAA GTAATAAAGT AAAGTATTTC GCCGTGAGAG AAAGAACAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand +6 : +17 AAAAAGTAAtAA AC RSP00115 Mean Expected Number 0.007 -strand -147 : -157 ATAGAAcTCAA AC RSP00792 Mean Expected Number 0.006 +strand -127 : -118 CCAAGtAACA AC RSP00916 Mean Expected Number 0.002 -strand +3 : -7 GATGACGGGA AC RSP01435 Mean Expected Number 0.001 -strand -179 : -188 TCCCCAACCA Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G34630 |PROD: the same as GENE |complement(16536870..16537751) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.28 C - 0.22 1 acgacatcaa atttacatgt ccacttattt atttactggc aaactttctg 51 gcgacgctga ggtggcaaaa taatccttac gtggcaacat ataactggtt 101 gtaaatacgt atcttcaaca gtgtaactaC CAATtagcac aagataacac 151 tcggtggttt gcctcTATTA ATAgggtaac ttcctctggt tatcaaaaac 201 AAACAGTCTT GAAAAATCAA AGAAGCAACC TCTAAACAAC ACACAATTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -123 : -116 TACGTGGC AC RSP00132 Mean Expected Number 0.000 -strand -135 : -142 GCCACCTC AC RSP00210 Mean Expected Number 0.000 -strand -135 : -146 GCCACCTCAGCg AC RSP00247 Mean Expected Number 0.003 -strand -116 : -125 GCCACGTAAG AC RSP00248 Mean Expected Number 0.002 -strand -116 : -125 GCCACGTaAG AC RSP00248 Mean Expected Number 0.002 -strand -135 : -144 GCCACcTCAG AC RSP00847 Mean Expected Number 0.001 -strand -136 : -145 CCACCTCAgC AC RSP01034 Mean Expected Number 0.004 +strand -122 : -116 ACGTGGC Totally 8 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 203. Group TF: MAT2 (ROM2) /AC: RSP00210//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,B /TF: MAT2 (ROM2) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: auxin-responsive family protein |LOCUS: AT4G34760 |PROD: the same as GENE |complement(16582188..16582884) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.07 T - 0.30 C - 0.33 1 caatgtcaca aagaggacca acaatgaaat taaatcctca gctggccttt 51 aacattttgg ctcccaccat ctccttccac acatatgcac atgtcttcat 101 gtctctctct ctctatacgt tacctacaca aatatgtaca gacaaatagc 151 ccattacaaa atctttattT ATAAATAtat actcctcaac tccctcaata 201 TCCACCCATC TCCTTCTCCA TAACTCTCTC TCTCTCTCCC TAAACACAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00713 Mean Expected Number 0.003 -strand -157 : -163 CAGCTGA AC RSP00864 Mean Expected Number 0.007 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand -87 : -95 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand -89 : -97 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand -91 : -99 AGAGAGAGA AC RSP00865 Mean Expected Number 0.007 -strand +39 : +31 GGAGAGAGA AC RSP01114 Mean Expected Number 0.003 -strand -141 : -147 CCAAAAT AC RSP01475 Mean Expected Number 0.000 -strand -141 : -149 CCAAAATGT AC RSP01641 Mean Expected Number 0.006 +strand -104 : -95 TCaTGTCTCT Totally 11 motifs of 6 different REs have been found Description of REs found 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: chalcone and stilbene synthase family protein |LOCUS: AT4G34850 |PROD: the same as GENE |16608318..16610253 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.24 C - 0.21 1 aagactatgt atcaagaaaa aaatctcaaa gaactggagt tggattttag 51 aaagagccaa tgcaataaac atgaagcttc taaatctcac acctactctt 101 caccaaatat caactagaca gaaataccgc ACAATatgca ggtcacaaaa 151 ctgcaaaagc tgcagtgTAT ATATAtgcct tcactttgaa ccttatttac 201 AGACCCAAGA TTTGAGTCTT CAACAAACAG ATACAAATGG GAAGCATCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00961 Mean Expected Number 0.007 +strand -49 : -42 TGCAAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: IDH1 |LOCUS: AT4G35260 |PROD: |complement(16774200..16776330) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.35 C - 0.14 1 atgtcaaact aaattaatta ctgagtaaat gttgatgaag ttaaatgatt 51 ggggggattt gtataaatat cttaattgac gattctgaaa caaagtggtc 101 taatcggtga ttatctATTG Ttttatggaa atatcttaat gagatgaaga 151 ttttggggcg aattgTGTAA ATAactaaat tttaacaata aacgcttttc 201 GTCCGCCTCC AGCTCCCAAA AGCCAAAGGG CGAATCTTCT TCTTCTCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.010 +strand -112 : -103 AACAAAGTGg AC RSP01167 Mean Expected Number 0.005 +strand -137 : -129 TAAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PSAT |LOCUS: AT4G35630 |PROD: phosphoserine aminotransferase, chloroplast (PSAT) |16904064..16905727 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.36 C - 0.18 1 tgatttgatc tgtaacaagt ctttctttta ttgatatctc agcaataaaa 51 ttctcttata ccaatcatat tttttgtcaa tagttacaga ttcatagaat 101 atgtatgata taaggatgag agttttgatt tgaactcttt ttcttctaca 151 acTTTAAATA aaacacattg gaaatgagtc ttaactatac taacaccgca 201 GACAAAACTA GTACCACCTA ACACAAACGC TGTCGTTTTC AAGCTACATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand +38 : +25 AAACGACAgCGTTT Totally 1 motifs of 1 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G35905 |PROD: the same as GENE |complement(17007031..17008157) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.21 T - 0.27 C - 0.16 1 cggacgaatg gtcaacaaat tagaattgag ggcatcaaac aagaactata 51 aaatatagag gcttatattt gaaaattttc tcccctagct agaataatat 101 atacacattg aagggaccgt ttgtgaaaca taaaaATTGA ggggcatggt 151 tggaaactTT TAAATTtata ggggcgtttt gcgtttttac tcaaaaagtc 201 CAAAACTATC GCTCAACGCC GGTCGATTCT ACCGGAGATC GGAAAAAAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.009 +strand -23 : -17 TTTGCGT AC RSP00503 Mean Expected Number 0.003 +strand -116 : -109 CTAGCTAG AC RSP00503 Mean Expected Number 0.003 -strand -109 : -116 CTAGCTAG AC RSP00734 Mean Expected Number 0.002 -strand -20 : -27 CAAAACGC AC RSP01000 Mean Expected Number 0.004 -strand -54 : -63 ATGCCCCtCA Totally 5 motifs of 4 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: cold-shock DNA-binding family protein |LOCUS: AT4G36020 |PROD: the same as GENE |complement(17043136..17044399) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.36 C - 0.23 1 aaagtgaaat agcaagtttc ctaaatttct ccagtcccaa agaatattcc 51 accaaaattt ttaattaggc ggcatagtca aattagggtt taattacatt 101 ccccactaaa attagggttt tctcattaat ttcctcttaa ttacagattt 151 aatcccactc tacctcTATA TATAtataca cacacacgcc taaggatttc 201 CCAACTTAAA AAACCCTAAT TTCTCAATCT CTTCTTCAAC TTTTTTTTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.000 +strand -118 : -110 TTAGGGTTT AC RSP00279 Mean Expected Number 0.000 +strand -89 : -81 TTAGGGTTT AC RSP00279 Mean Expected Number 0.004 -strand +19 : +11 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +11 : +19 AAACCCTAA AC RSP00369 Mean Expected Number 0.000 -strand -81 : -89 AAACCCTAA AC RSP00369 Mean Expected Number 0.000 -strand -110 : -118 AAACCCTAA AC RSP00438 Mean Expected Number 0.001 +strand -133 : -128 GGCGGC AC RSP00483 Mean Expected Number 0.007 -strand -128 : -132 GCCGC AC RSP00807 Mean Expected Number 0.001 -strand -128 : -133 GCCGCC AC RSP01237 Mean Expected Number 0.003 +strand -37 : -28 CTCTATATAT AC RSP01303 Mean Expected Number 0.010 +strand +10 : +19 aAAACCCTAA AC RSP01303 Mean Expected Number 0.001 -strand -80 : -89 aAAACCCTAA AC RSP01303 Mean Expected Number 0.001 -strand -109 : -118 TAAACCCTAA AC RSP01304 Mean Expected Number 0.000 -strand -109 : -118 TaAACCCTAA AC RSP01601 Mean Expected Number 0.002 -strand -192 : -199 TTTCACTT Totally 15 motifs of 9 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: MADS-box protein (AGL40) |LOCUS: AT4G36590 |PROD: the same as GENE |complement(17260942..17262232) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.39 C - 0.10 1 tccttaagaa attttagaga taattatgtc cttaagaaat ttcagagata 51 attatgaaat attcctcaaa ttggaaaatt aattttttgg caaaattaag 101 ggttgaagga ttatgtttac ttataatgga cctataatgt attacatttc 151 catatgtaat acacctgTAT AAATAtaaag aacatatttt atttcttagc 201 ATCAAATTTG TCATTTGTTT ATTCAAATTT TTGAGAAAAT GGTGAGAAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00109 Mean Expected Number 0.004 +strand -39 : -34 CACCTG Totally 1 motifs of 1 different REs have been found Description of REs found 107. Group RE: E-site /AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: E-site /TF: unknown ||Identical REs AC: RSP00309 RSP01147 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ACD2 |LOCUS: AT4G37000 |PROD: accelerated cell death 2 (ACD2) |17442606..17443844 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.30 C - 0.16 1 cacttgattg agtagaagaa gatcacttac caactctcaa accatttaaa 51 aattaaaaag catagtttat tttatttaaa tatgtgtatg taataattca 101 ccacaagaaa tatattacaa accacaaaac tataatcccg gtaaaatagt 151 aattaatttc ttcaaaagTG TAAATAaaaa agaagagaca taatttagtc 201 ATAGCCACAT AAAAAATGGC GATGATATTT TGCAACACTC TCTACTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -29 : -39 TACACTTTTGa AC RSP00962 Mean Expected Number 0.005 +strand -192 : -186 TGAGTAG AC RSP01621 Mean Expected Number 0.001 -strand -29 : -38 TACACTTTTG AC RSP01640 Mean Expected Number 0.005 -strand -8 : -17 tTATGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G37540 |PROD: the same as GENE |complement(17639527..17640651) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.37 C - 0.22 1 acttttcaaa atgttatctc aatctccttt gagtttctgt cttccccata 51 ataaatttca aataattaat acacatggtt ttttaattag aaataatgga 101 aaagaaagga caaaggaata aaaaagaaac acaagttggc acactctctt 151 tattattcac tcccctcTAT AAATCtcata ctatcttctc tcatcttctt 201 GAAACTTGTT TTCTCTTTCC CTTCTTCAAT CAAAACCTAT TTGCATGCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.007 -strand +47 : +41 CATGCAA AC RSP00445 Mean Expected Number 0.005 +strand -81 : -72 AAAAAAGAaA AC RSP00755 Mean Expected Number 0.008 +strand -87 : -81 AGGAATA AC RSP00850 Mean Expected Number 0.005 -strand -61 : -66 GCCAAC AC RSP01039 Mean Expected Number 0.006 +strand -97 : -92 GAAAGG Totally 5 motifs of 5 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 717. Group RE: submotif A /AC: RSP00755//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif A /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G37610 |PROD: the same as GENE |complement(17670475..17672334) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +348 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.37 C - 0.23 1 atatatttgt ttttggatag aataaaacta aaaaaagtgt gtgcttagga 51 aagttcgtcc gacgtgtata tgaatcagca aatacttatc ttgatcctct 101 ccgtgtgggt cccatttcga cgtgttcaca ttttccacca attaaTCAAT 151 ttagaccatT ATAAATAgtc tcccgctcgc tttgctctct tctttctctt 201 ATTTTCCTAT TCTTGAAAAC ACACAACACA TCTCATTTCT CCGCTGTTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.004 +strand -170 : -161 AAaAAAGTGT AC RSP00471 Mean Expected Number 0.000 +strand -98 : -88 GTGTGGGtCCC AC RSP00635 Mean Expected Number 0.002 +strand -93 : -86 GGTCCCAT AC RSP01091 Mean Expected Number 0.003 +strand -184 : -174 ATAGAATaAAA AC RSP01210 Mean Expected Number 0.006 -strand -164 : -173 CTTTTTTTAG AC RSP01712 Mean Expected Number 0.000 +strand -173 : -164 CTAAAAAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 449. Group TF: Alfin1 /AC: RSP00471//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS1 /TF: Alfin1 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein, contains Pfam domain |LOCUS: AT4G37680 |PROD: the same as GENE |17700705..17702747 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +520 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.36 C - 0.18 1 atttgttaat attttcgaca aaacattttc tctgtttgat gtatttccat 51 cctcgtacaa taaatactct agctattaaa ttcttagccc aaacgaaaat 101 aaagaaaaat aaaagggtcc tactaataaa caaaacaaaa ctagtggtcc 151 caatttgaaa taTATAAAAA tatataaaat tcataaagct ttgtggcttc 201 AGAGCTTCCA CTTCCATCGT CGTCTTCTAT TTTTTCTTCT TTCTTCGATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00596 Mean Expected Number 0.007 -strand -4 : -9 GCCACA AC RSP00895 Mean Expected Number 0.000 +strand -57 : -50 GTGGTCCC Totally 2 motifs of 2 different REs have been found Description of REs found 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: xyloglucan:xyloglucosyl transferase |LOCUS: AT4G37800 |PROD: the same as GENE |complement(17775468..17777391) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.29 C - 0.21 1 agacatattc agtgaattta aaaacataat aataacaaca ataatagaaa 51 attggtaggt ccaaaatcat tgtgacaaat cgatcagtga ttagctgtac 101 tgaaaatcta agctctaaat gagaccgttc ctcaataATT GTacatacat 151 ttgcctgcat gcatctccaT ATAAATAtgc cttcgatctt ctacttccaa 201 AACAAACTCA TCATCATAAG CAACAATGGT GGTGTCACTC TTCTCTTCCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.003 -strand -140 : -149 gACCTACCAA AC RSP00837 Mean Expected Number 0.003 -strand -12 : -21 AGATCGAaGG AC RSP01060 Mean Expected Number 0.006 +strand -68 : -60 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand -60 : -68 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -68 : -60 CAATAATTG AC RSP01453 Mean Expected Number 0.002 -strand -141 : -147 ACCTACC Totally 6 motifs of 5 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G38100 |PROD: the same as GENE |complement(17886864..17888198) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.28 C - 0.18 1 aagtaaagta taatactttg actattccaa atccaaagaa gaaagaaaga 51 aattggcgct aaggtaatcc aaagtggtac tttataacag accggttttt 101 gaagttttat atgtttgggc cgaaccaagt attaacaacg gcccattatc 151 caaaacccta gaagccttgt tTATAAAATg acagtttttt tcaggagatg 201 AAATGACTTT GATGCATCCG TACGAAAATG GAGCTCTGCA CCAGGTCTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand -162 : -149 AAGAAAGAAAGAAA AC RSP00566 Mean Expected Number 0.010 +strand -36 : -27 CCTTGTtTAT AC RSP00860 Mean Expected Number 0.006 +strand -161 : -153 AGAAAGAAA AC RSP00860 Mean Expected Number 0.006 +strand -157 : -149 AGAAAGAAA Totally 4 motifs of 3 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: amino acid transporter family protein |LOCUS: AT4G38250 |PROD: the same as GENE |17935396..17937229 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.23 C - 0.24 1 ctcgccatat cgacgacaaa caaccagatc aaaaccggtg gatcttctgg 51 tgtttgccgc cgggagggag ctagctaata aggaagttgt ttgaaacggc 101 gtcgtgcgtt ataacaaaaa cggtaccgtt tcccagtaaa aatgataaga 151 tgaccatttc atttcatcCA TAAATAgagc cgagcttctt cctctgtaaa 201 TCTCTGACAA CAAACCAAAA AAGAGAGTCC ACCAACTCTA CACGCAATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.001 -strand -145 : -152 CAAACACC AC RSP00166 Mean Expected Number 0.002 +strand -148 : -141 TTTGCCGC AC RSP00228 Mean Expected Number 0.001 -strand -55 : -66 ATCATTTTtACT AC RSP00445 Mean Expected Number 0.001 +strand +17 : +26 AAAAAAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G38370 |PROD: the same as GENE |complement(17969521..17971289) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.22 T - 0.27 C - 0.08 1 atttaaaaaa atatcggatt agaaggaaat tagtgactgt aaatgttaag 51 ctttgactaa aagataaggg ataaaagaga taagaatgca gccagtcaaa 101 accttagaaa ttactgatat gagattttcg ataaaaatta ggaattagaa 151 gaaattagtg aatacgaccg TATAAATAtc aaacctcaga tagatagagt 201 AAATGAAATG TATAGAGAGG TAAAGTGGGA ATTTTGACAT TGGTGGGTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00378 Mean Expected Number 0.010 +strand -149 : -143 TTTGACT AC RSP00859 Mean Expected Number 0.001 -strand -104 : -113 GACTGGCTgC AC RSP01103 Mean Expected Number 0.001 +strand -20 : -13 AAACCTCA AC RSP01520 Mean Expected Number 0.006 +strand -18 : -13 ACCTCA AC RSP01748 Mean Expected Number 0.000 +strand -151 : -139 GcTTTGACTAAAA Totally 5 motifs of 5 different REs have been found Description of REs found 363. Group TF: WRKY1 /AC: RSP00378//OS: Petroselinum crispum /GENE: WRKY1/RE: WB /TF: WRKY1 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1371. Group TF: HBP-1a /AC: RSP01520//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Hex123-a /TF: HBP-1a 1555. Group TF: WRKY11 /AC: RSP01748//OS: Arabidopsis thaliana /GENE: AtWRKY11 (At4g31550)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATFP6 |LOCUS: AT4G38580 |PROD: |18034445..18035879 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +145 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.28 C - 0.23 1 tccaaaaaag aaaccgaaaa aaaaaaacta gaaattagga aaccgttagc 51 aagaagagaa gaatcgagac ggcgactagg aaactgctgg gaccagaaaa 101 gaaaggtgac ccatccatca ttcacttaat tagatacata ctgtattact 151 tattacaata atgccTATAT ATAttctccc aattcatcat ttacttcttt 201 ACACCTCCAC TTTCCCTTTT GCCCCTCTTT TTTACAGATT TCACTCTCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.008 -strand +33 : +24 AAAAAAGAGg AC RSP00751 Mean Expected Number 0.003 +strand -190 : -179 AAACCGAaAAAA Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATRER1A |LOCUS: AT4G39220 |PROD: RER1A protein |18263611..18265765 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +663 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.33 C - 0.12 1 tttggcaatt tctcaattag gggtttaatt taacattttc taaataattg 51 gggttaaact gaatttatta ctcctctcag tggttttgcg taaatattaa 101 ggggttaaAT TGAtaatgga aaaaggttgg ggtcagataa aagatcgaat 151 agcttttata agtgacgtaa ataTATAAAA Acaaaacgcg gaaacaatta 201 AAAATAAAAT CAAAAATAAA TCGCCGATCA ATCCATCTTC TTCTTCATTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.005 +strand -38 : -31 TGACGTAA AC RSP00233 Mean Expected Number 0.005 -strand -30 : -39 TtTACGTCAC AC RSP00734 Mean Expected Number 0.002 +strand -19 : -12 CAAAACGC AC RSP01013 Mean Expected Number 0.003 -strand +51 : +42 CAAATGaAGA AC RSP01014 Mean Expected Number 0.006 -strand +51 : +42 CAAATGAAGA AC RSP01463 Mean Expected Number 0.010 -strand -21 : -33 tTTTATATATTTA AC RSP01733 Mean Expected Number 0.007 -strand -10 : -15 CCGCGT Totally 7 motifs of 7 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: transporter-related |LOCUS: AT4G39390 |PROD: the same as GENE |18315569..18318037 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +703 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.15 T - 0.29 C - 0.11 1 atcaaactct tttaaattcg tagaaatttg ttttaagcat taaaaaaaaa 51 aagatattaa aaaatcaaat atcctatatc tatagtgtaa caaaagaaac 101 actgtatatt aacacaaatt agatttaATT GTtttgcttg aagaagaaag 151 tgagggaaaa tgAATAAATA aaaaaggttt taaaaaaaag agaaaagatt 201 CTTCTCCCTG TCCTCGCTTC TTAAATGGCA AGAAAGGAGA CTCTGATGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 +strand -17 : -8 AAAAAAGAGA AC RSP01031 Mean Expected Number 0.009 -strand +2 : -6 AGAATCTT AC RSP01234 Mean Expected Number 0.007 -strand -60 : -66 TCAAGCA AC RSP01577 Mean Expected Number 0.009 -strand -64 : -73 GCaAAACAAT Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: kelch repeat-containing F-box family protein |LOCUS: AT4G39753 |PROD: the same as GENE |18440106..18441439 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +13 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.31 C - 0.14 1 aggttactat ataatttaaa ttattggcaa tatcaaccga aaaaacacat 51 ttagcttcaa aataacaagt tttggcgtat ggggttgtct ttgattgtta 101 agggACAATt agatatattt tagttaaaat taagggttaa atattcaata 151 ttaaaaaaag gggaagacat aTATAAAGTg gtattggaaa agcccgaatc 201 ATGTTTAACC CTAATGGTCA CTTTTTGGGC AGAAACCGCC GCCTCTGCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.003 -strand +43 : +38 GGCGGC AC RSP00807 Mean Expected Number 0.003 +strand +38 : +43 GCCGCC AC RSP01303 Mean Expected Number 0.002 +strand +5 : +14 TtAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand +5 : +14 TtAACCCTAA AC RSP01639 Mean Expected Number 0.009 +strand -118 : -109 GGTTGTCTTT AC RSP01776 Mean Expected Number 0.007 -strand -103 : -113 ACAATcAAAGA Totally 6 motifs of 6 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: MI-1-P SYNTHASE |LOCUS: AT4G39800 |PROD: |complement(18469342..18471958) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.24 C - 0.30 1 tgtcaattac tatttttaat tttccgctcc tccctcacgt gtgagacccc 51 acacgtgtgg ctcactatga accagaagca tcactagctc acatgcattg 101 gacaaatagg gaccatcaac cagtgaagtg acgccacggt gtctctatct 151 cccttgctgt ctcgtctaTA TAAACTtgca cgtctccgct gattagaagc 201 ACAAAACTCA CACCCCAAAA CCGATCCAAA TTCCGAGAAA GACAACCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01256 Mean Expected Number 0.003 +strand -150 : -143 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -143 : -150 ACACGTGT Totally 2 motifs of 1 different REs have been found Description of REs found 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: histone H3.2, identical to Histone H3.2 |LOCUS: AT4G40040 |PROD: the same as GENE |complement(18557181..18558737) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +507 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.28 C - 0.20 1 tcagccaata gcaatcaatt atgtagcagt ggtgatcctc gtcaaaccag 51 taaagctaga tctggaccgt tgaattggtg caagaaagca catgttgtga 101 tatttttacc cgtacgatta gaaaacttga gaaacacATT GAtaatcgat 151 aaaaaccgtc cgatcaTATA AATCcgcttt accatcgttg cctataaatt 201 AATATCAATA GCCGTACACG CGTGAAGACT GACAATATTA TCTTTTTCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 -strand -131 : -138 ACGGTCCA AC RSP00459 Mean Expected Number 0.005 -strand -156 : -165 TTGACGAGGA AC RSP00523 Mean Expected Number 0.007 +strand +16 : +22 ACACGCG AC RSP01505 Mean Expected Number 0.000 -strand -36 : -44 GATCGGACG Totally 4 motifs of 4 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01015 |PROD: the same as GENE |complement(5261..5890) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.24 T - 0.33 C - 0.15 1 ttgtagtagt cgacacttat tcactccaag gtgaattttt tttgtgtaag 51 cagatatggt tttctaacaa gtggacattc tccagccata atggtttggt 101 agggttgcac ATTGTactta ctgggcgaag agaagataac atatcaatga 151 acagtagaca tatgatgcTA TTAATAcaca tgtgattgga aatagttgtt 201 GCCTTAGCTG TGTATGATTG GACTTGTAGA ATCTGGTGGA GTGACCCACT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01469 Mean Expected Number 0.007 -strand -16 : -25 TCACATGTGT AC RSP01751 Mean Expected Number 0.001 -strand -126 : -134 TCCACTTGT Totally 2 motifs of 2 different REs have been found Description of REs found 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01470 |PROD: the same as GENE |190927..192610 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.24 T - 0.26 C - 0.18 1 gagagcgaaa agaaaggaaa acttacgaat tttgttttaa aaaacagtta 51 aataggaatc gatttggcac gatttggtat gtctttggtt ttggtaattt 101 ggtatggtta gtaaaatctc cggacactct gggagggtca gagggtctca 151 gagatgggaa cacattaTAT AAACCgttgg aggaacacag cctctcgctt 201 AGCTAACAAC AACTCAACGA GTGACATGGA CATCGCCCTC TTCTCACCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.002 +strand -162 : -151 AAAAAACaGTTA AC RSP00716 Mean Expected Number 0.001 -strand -108 : -116 CAAAACCAA AC RSP00862 Mean Expected Number 0.003 +strand -190 : -182 AGAAAGGAA AC RSP01223 Mean Expected Number 0.001 +strand -27 : -19 CCGTTGGAG Totally 4 motifs of 4 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1129. Group TF: C-myb /AC: RSP01223//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: C-myb motif /TF: C-myb ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: mitochondrial substrate carrier family protein |LOCUS: AT5G01500 |PROD: the same as GENE |198948..201551 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.31 C - 0.18 1 aggaatttat tttcttagtg attaaaaaac aaaaaacaaa tgttcgaagt 51 atcggagaag gcccaactga gcccactagt ttaaattgta ctttgtgatt 101 cccttgggcc ttgtggatcc cattaagtac taactgttat ttacaagaat 151 gccatcatcg gaggccattT ATAAATTttg gactcaattt tgttgcaaat 201 AAAAATCTGA AATTCTCAGG CGAGATTCCG GAAGCAAAAC ATTCCTAAAT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01740 |PROD: the same as GENE |280719..281442 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.26 C - 0.17 1 accaaataat tgctcgaaaa acgacctaag attattgcga tattcagttt 51 atcaccgaca atagaaaaag gggaaaaaaa agagttattt gttattataa 101 agaaagctgA TTGAaaaagg accaagtctt aaaatgaccc tttgtaccga 151 gtacttgatt atgttgtcTA TAAAAGggac tgaaaccaca agacgtaagc 201 ACACAACACA AATATAAGAC TTTTCACTTG AAAACCTATC CTGTTCTAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01601 Mean Expected Number 0.003 +strand +22 : +29 TTTCACTT Totally 1 motifs of 1 different REs have been found Description of REs found 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G02050 |PROD: the same as GENE |complement(402984..404304) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.38 C - 0.25 1 gagctatttt gttcttctct ccttttgcct ttaaggacgt gtccacacac 51 agacattcct ctctcactgt acgaatgacc aattcctttt aatatatggg 101 cttcttatgg cccattaagt aATTGGgcct tattaaatgg ctttttatct 151 cctacataat gctttgcacT ATAAACAaac cttaaacctc tcttcttctc 201 TCAGTAAAAC CCTCATTTCT GTTTCTCTTT TCACTTTTAA GGAAAACCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00423 Mean Expected Number 0.009 +strand -165 : -160 GACGTG AC RSP00424 Mean Expected Number 0.009 -strand -160 : -165 CACGTC AC RSP00821 Mean Expected Number 0.000 -strand -158 : -167 GaCACGTCCT AC RSP00863 Mean Expected Number 0.008 -strand -137 : -145 AGAGAGGAA AC RSP01035 Mean Expected Number 0.008 +strand -164 : -158 ACGTGTC Totally 5 motifs of 5 different REs have been found Description of REs found 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G02220 |PROD: the same as GENE |complement(441705..442144) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.35 C - 0.20 1 cacgtcagca tagccagctc acatcaagct gtttaaaacc atatccaccg 51 tccgattgat atttcagaaa gagcttcgtg agaaagattc cttttttgtt 101 ctccctccca aatttcgaat tttttaaaag gaaataatct gaattttttt 151 tttttttttg ataTATAAAA Taaagatgta accgcctctt ctcagacttc 201 AAATTTTTTC CCTCTTACGA CGATTTCGAG TTCGAGAGAG AAGAATGGAG 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G02230 |PROD: the same as GENE |448132..450651 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +998 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.31 C - 0.22 1 ttaatttgac ttgtacgtta gaacttagaa acacgcggat tttaattaaa 51 aaagtagtta ggagaagaaa cacaattaat taattttaaa agcaaatata 101 tataattaaa acaaatgaaa tatATTGCaa aatagctttt aatgatcgaa 151 aagagccaga gagactttgc TATAAAAAcc cctcctctgc ctctctcaat 201 CCCTCCCCCA CACCTTCTCT TTCTCTTAGC ATACTCTGCT CTTCCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.001 +strand -66 : -57 GCTTTTAATG AC RSP00253 Mean Expected Number 0.001 -strand -160 : -167 AATCCGCG AC RSP00523 Mean Expected Number 0.004 +strand -170 : -164 ACACGCG AC RSP00621 Mean Expected Number 0.001 +strand -22 : -14 CCCCTCCTC AC RSP00861 Mean Expected Number 0.002 -strand +24 : +16 AGAAAGAGA AC RSP00863 Mean Expected Number 0.002 -strand +50 : +42 AGAGAGGAA AC RSP01015 Mean Expected Number 0.009 +strand -89 : -80 CAAATGAAAt AC RSP01071 Mean Expected Number 0.003 -strand -180 : -189 CtAACGTACA AC RSP01602 Mean Expected Number 0.009 +strand -7 : +1 TCTCAATC AC RSP01692 Mean Expected Number 0.003 -strand -51 : -58 TTCGATCA AC RSP01733 Mean Expected Number 0.006 -strand -163 : -168 CCGCGT Totally 11 motifs of 11 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: MT2B |LOCUS: AT5G02380 |PROD: metallothionein protein 2B (MT-2B) |complement(506545..507242) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.37 C - 0.15 1 catgtaaaaa gcttttgttt ccaactctaa tcctcaatat tttatttttc 51 tgtttattgg aaaagggctg taaactaaaa ttatttactt gaggaacgat 101 tatttaggtg ataagagtgg acaaagatcg ttgacacgtg gacggtctac 151 aaattctaat tttgccTATA AATAtcaaag ctcctgaata tgtaagtttc 201 ATTCACTGAT TATCGTTTAA GGCAAATTAA GATCATCTTC ATAAATCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 -strand -59 : -68 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 +strand -68 : -59 GACACGTgGA AC RSP00188 Mean Expected Number 0.002 -strand -59 : -68 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -68 : -59 GACACGTGGa AC RSP00284 Mean Expected Number 0.007 -strand -56 : -61 CCGTCC AC RSP00340 Mean Expected Number 0.002 -strand -59 : -68 TCCACGTGTC AC RSP00524 Mean Expected Number 0.005 +strand -67 : -61 ACACGTG AC RSP00682 Mean Expected Number 0.001 +strand -68 : -59 GaCACGTGGA AC RSP01035 Mean Expected Number 0.005 -strand -62 : -68 ACGTGTC AC RSP01255 Mean Expected Number 0.001 +strand -67 : -60 ACACGTGG AC RSP01274 Mean Expected Number 0.002 -strand -59 : -68 TCCACGTgTC AC RSP01296 Mean Expected Number 0.007 +strand -35 : -27 CTATAAATA AC RSP01734 Mean Expected Number 0.005 -strand -59 : -65 TCCACGT Totally 13 motifs of 13 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G02420 |PROD: the same as GENE |523387..524074 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.36 C - 0.14 1 tttttctagt ttactgctaa atattaattt acatagataa tttattttac 51 ttttttttgg acatcaattt agatagatat agcatacatt ttttgtcaac 101 aACAATaagt atacatatac aatgtatata ttgaacctat aatagaaaaa 151 aatcaAATAA ATAaacattt tatgtaatcc cgccacttgg gagacagatc 201 ACTAGTTAGT TGAAATGGAG GCTTTCAAGC TTCGGATCCA ACGCACGTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 -strand -146 : -157 AAAAAGTAAAAt AC RSP00397 Mean Expected Number 0.000 -strand -14 : -21 AGTGGCGG AC RSP00522 Mean Expected Number 0.004 +strand -18 : -12 CCACTTG AC RSP00960 Mean Expected Number 0.003 -strand +12 : +5 CAACTAAC Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G02540 |PROD: the same as GENE |568524..570918 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.35 C - 0.21 1 gaatcgaccg tcacaagaaa aaactaatat acatactgta catatctata 51 ttcaatattg gtggggatgg gtttaatgtg tatttataat tcatggataa 101 attcacACAA Taaggtccat gaaactagaa ggtaccaaaa ataagcatta 151 atgactcttt gccactTATA TATAtgattc tctcatagta ccattttatt 201 CTCCCAAACC TATCTTCTTC TTCCTCTCTT GTCTCTCTCG CTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00601 Mean Expected Number 0.000 -strand -135 : -143 CCCCACCAA AC RSP00863 Mean Expected Number 0.003 -strand +29 : +21 AGAGAGGAA AC RSP00864 Mean Expected Number 0.003 -strand +50 : +42 AGAGAGAGA AC RSP01641 Mean Expected Number 0.009 +strand +27 : +36 TCTTGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transferase family protein |LOCUS: AT5G02890 |PROD: the same as GENE |complement(670063..671467) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.34 C - 0.17 1 gataaaataa agtatcaatt aattcaaggt ttattcacat ctgtattcgc 51 tgttgggttt catttataac attaaagcac atttcttata ctactagcta 101 gatatttgca ccactttttt ttattacaaa gttatgtttt gcaagttgtg 151 taataacttg agttccTATA AATAgcagag gacggtctaa agccaatttc 201 ACAATTCGAA CCAAAATGGA AACCAAAATC CCTAAGTCAA TGATCGCCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.007 -strand -16 : -21 CCGTCC AC RSP00442 Mean Expected Number 0.009 -strand -67 : -76 TAACTTTGtA AC RSP00503 Mean Expected Number 0.002 +strand -107 : -100 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -100 : -107 CTAGCTAG AC RSP00509 Mean Expected Number 0.002 +strand -34 : -23 TATAAATAgCAG AC RSP00698 Mean Expected Number 0.006 -strand -175 : -185 TGAATTAATtG AC RSP00894 Mean Expected Number 0.010 +strand -180 : -173 AATTCAAG AC RSP01296 Mean Expected Number 0.008 +strand -35 : -27 CTATAAATA AC RSP01469 Mean Expected Number 0.008 +strand -166 : -157 TCACATcTGT Totally 9 motifs of 8 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: monodehydroascorbate reductase, putative |LOCUS: AT5G03630 |PROD: the same as GENE |complement(922165..924676) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.25 C - 0.21 1 tgtccgtttt acatcgacca gatctgtcac gtgttaaata agaccgggtc 51 aaaaatataa gacgctgact tgtaacggtt cgatttcgat ttgtgcacga 101 agcgggatat ctaacggttt aaattaagcc acgtttaaag attccttcta 151 tactggacaa agtccccTAT AAAAAcctct gacccaatca catttctcgg 201 ATCCAAAAAG ACGAAGAAAA GGAAAAAAGA CAAATCAAAG AGAGACGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.008 -strand -167 : -173 ACACGTG AC RSP00842 Mean Expected Number 0.002 +strand -5 : +3 CTCGGATC AC RSP00978 Mean Expected Number 0.002 +strand -175 : -166 gTCACGTGTT AC RSP01034 Mean Expected Number 0.007 -strand -67 : -73 ACGTGGC Totally 4 motifs of 4 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted protein |LOCUS: AT5G03900 |PROD: the same as GENE |1048294..1052386 |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.31 C - 0.16 1 gtaacgacca ctctatgttg aaccgtttcc ggtttaagat attctaaccg 51 gatgattgag agtcgtaccg attggtttga atcggttttg gattttgctg 101 ctctatcgtc gtgggagaga gataatcaTC AATttttcca ggcaaaaagc 151 ttcgattttg aaccaTATAA ATCatctccc atggcggaaa tcgaagtctt 201 TAACTAAAGA AGAAGAAGAA GATAAAGCTT TGTAATTTAT AGAATGGCGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00865 Mean Expected Number 0.001 +strand -87 : -79 GGAGAGAGA AC RSP01602 Mean Expected Number 0.007 -strand -140 : -147 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: latex-abundant protein |LOCUS: AT5G04200 |PROD: the same as GENE |1153791..1155041 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.26 C - 0.21 1 tctttctcaa aagtctgatt taaggtttag tttcttgctt gaaagcatta 51 ataagtcaag agtaagccat taaaaaatgt tccatagctt aaaagcaaac 101 tagacttgaa aatataaata ctaatatcgt atgtaacttg aacttcacta 151 cacgaaacct caatCATAAA TAcacattag ctccaaaacc acaacactgc 201 ACATGAAAAC TAAACACACG TACACAAGAA ACCCCAAAAC ATTTTGCCTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01233 Mean Expected Number 0.006 -strand -162 : -168 AGCAAGA AC RSP01234 Mean Expected Number 0.005 -strand -159 : -165 TCAAGCA AC RSP01631 Mean Expected Number 0.002 +strand -163 : -153 CTTGAAAGCAT AC RSP01631 Mean Expected Number 0.002 +strand -113 : -103 CTTAAAAGCAA AC RSP01632 Mean Expected Number 0.002 +strand -163 : -153 CTTGAAAGCAT AC RSP01638 Mean Expected Number 0.003 +strand -113 : -103 CTTAAAAGCAA Totally 6 motifs of 5 different REs have been found Description of REs found 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: OTU-like cysteine protease family protein |LOCUS: AT5G04250 |PROD: the same as GENE |1176014..1178919 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +384 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.31 C - 0.18 1 aaaggaatta aataaagcgt gatctaatcg ttaaaaaagt gggagacacg 51 tggacaaata agggaggcta ttggggaaat agcggggttt taggattgtc 101 tttagcaacc gacctccgat attaacccga cgacggtgtg aaacggcgtt 151 aatgtTATAA ATAtatatct gccggctctt tttctttttt tcaacggctg 201 CGATTTTCTC TATCTGATTC TGACCAAACC CATCTTCTAA GGTTTTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.005 -strand -147 : -156 TCCACGTgTC AC RSP00068 Mean Expected Number 0.006 +strand -156 : -147 GACACGTgGA AC RSP00188 Mean Expected Number 0.004 -strand -147 : -156 TCcACGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -156 : -147 GACACGTGGa AC RSP00340 Mean Expected Number 0.005 -strand -147 : -156 TCCACGTGTC AC RSP00524 Mean Expected Number 0.010 +strand -155 : -149 ACACGTG AC RSP00682 Mean Expected Number 0.002 +strand -156 : -147 GaCACGTGGA AC RSP01035 Mean Expected Number 0.010 -strand -150 : -156 ACGTGTC AC RSP01255 Mean Expected Number 0.002 +strand -155 : -148 ACACGTGG AC RSP01274 Mean Expected Number 0.004 -strand -147 : -156 TCCACGTgTC AC RSP01722 Mean Expected Number 0.000 -strand -146 : -157 gTCCACGTGTCT Totally 11 motifs of 11 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CAT6 |LOCUS: AT5G04770 |PROD: amino acid permease family protein |1379081..1382420 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.21 1 aagcttttga gctgatgatg cttatgtgat taatgtgaat ataagaatta 51 gggaacaatc ttgttgttaa taacaatact tataacattt aaatgccctt 101 aagtatcgtc ataattacat ctttgtccct atccttctct ttttcacttt 151 tcctaatctc taaTATAAAA Ccaactcttg tcaaattcaa caaaattctc 201 ACACAAACCG ACCCGACCCG AATCTGGCCG GTGAGAAAAT GGAGGTCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.009 -strand +35 : +30 CTCACC Totally 1 motifs of 1 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G05440 |PROD: the same as GENE |1609251..1610447 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.07 T - 0.32 C - 0.22 1 atgatacaaa tgcgtctata tacacaactg tttctatata catacaaaca 51 caaagccttc acatccccag ctatctctat ccatctatct tcaaatatat 101 atttttaaaa acacACAATg ttcatatctt attgttattg ttataaaata 151 aaagatgatc atacttTTTA AATTtctcaa acaaaaccaa cttgacaacc 201 GACAGCGAAC AAGATCAAAA AGCTAGCTCT CTTCTTTTCT CATCAAACTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.008 +strand -19 : -11 CAAAACCAA Totally 1 motifs of 1 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G05500 |PROD: the same as GENE |1629668..1630397 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.28 C - 0.21 1 ttgacaaaga aaatggtggc agtcacgtaa taagccgcaa ctgcccccat 51 ttcatacaat acatgtataa tcttcataat tagtcgctca cacgtttcat 101 ACAATttgtc aaatttctca aaaaattaaa ctaattacac aatcaaatac 151 cagcctctat atgtttcTAT ATATAcgcat atttcttacc cctgaatcac 201 ACATCAAGAA GAAGAAGAAG TTTAAGAAGC AGAGTGTATA ACAAGTAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.009 -strand -58 : -69 ATTgTGTAATTA AC RSP01016 Mean Expected Number 0.004 -strand -33 : -40 AGAAACAT AC RSP01219 Mean Expected Number 0.001 -strand -161 : -169 TTGCGGCTT Totally 3 motifs of 3 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1126. Group RE: TT box /AC: RSP01219//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: TT box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G05960 |PROD: the same as GENE |1790232..1790834 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.34 C - 0.21 1 tagagactaa agggcagcat gatcttactt tagattaaaa tagctatgca 51 cttagaggct cttaatgcga ctgattaggt gaagtaatta ctatgttcct 101 ttagtgcttc ttccactact tctgtgtgga atttctctga tccttccaaa 151 tcctcctgca atttcagttg cTATAAAACt taggttccat aactagtagt 201 ATATGCATCA ACTCATCACT CAAGAATGGA AACCCATGTT TTATCTCGCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.001 -strand -188 : -198 CCTTTaGTCTC AC RSP00559 Mean Expected Number 0.005 +strand -44 : -34 TGcAATTTCAG AC RSP00985 Mean Expected Number 0.008 +strand -23 : -14 AcTTAGGTTC Totally 3 motifs of 3 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hyaluronan mediated motility receptor-related |LOCUS: AT5G06265 |PROD: the same as GENE |1905293..1908168 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1304 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.20 C - 0.18 1 ttacagagaa gaagaaaaga tttcttctca agtacacgac cataaagagg 51 aaatgggctt taaacactaa acccaggtca aagcccacga aggcccatga 101 aggctcacta atcttcattt cggtttaaat actttttaat gggtggatct 151 cgaagcagca gagtgaaaTA TAAAAGttgc gagttgaatc cacacaaaga 201 ACAGAAAATA AGAAAGATAA TAAAAGGAGG CAAACACGAA GAGCTCACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01014 Mean Expected Number 0.001 -strand -80 : -89 gAAATGAAGA AC RSP01019 Mean Expected Number 0.005 -strand -83 : -89 ATGAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein S8e family protein |LOCUS: AT5G06360 |PROD: the same as GENE |1944772..1946725 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.33 C - 0.23 1 attggatttt gcagtaaact acatagttac taatccaaga gtcaaagttc 51 tcgaaaaagt catcatttat tctaccatct gaagtgatgg gcttttaaga 101 atgatttagc ccattaatAT TGAcaagaaa gcccattata ttagtaagac 151 ccaaatattc gacccgttTA TAAAACccta gctcgcaggc tctgagtatc 201 TCTCTCCGTC CAATTTCCGT CTCTCTCTCT TTTTATCTCA CCGTCTGATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00160 Mean Expected Number 0.001 +strand -197 : -186 GGATTTTgCAGT AC RSP00296 Mean Expected Number 0.000 +strand -113 : -88 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -88 : -113 TGGGCT-- ** bp --AGCCCA AC RSP00857 Mean Expected Number 0.009 +strand -126 : -117 CCATCTGAAg AC RSP00864 Mean Expected Number 0.003 -strand +30 : +22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +28 : +20 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +7 : -2 GGAGAGAGA Totally 7 motifs of 5 different REs have been found Description of REs found 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: sulfotransferase family protein |LOCUS: AT5G07010 |PROD: the same as GENE |complement(2174679..2176107) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.27 C - 0.22 1 ataggaagga aaaaataatt cgagaaataa taaaaaagaa ttcgagtatc 51 agtgaaaata tggagtgggc caactaatat tcgcacacgc cgtttatttc 101 ccacgtgggc gataacaact gaggctgctc tcttctcttc acaacgcatc 151 tcatgcattt tgcgctatta TATAAACAcc caacttcatc tcgaaatctt 201 ACACCAACAC ACAAAGATTC CATTACAAAT AAACAATTTT CATATATATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.001 +strand -100 : -91 CCACGTGGgC AC RSP00718 Mean Expected Number 0.001 +strand -100 : -93 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -93 : -100 CCACGTGG AC RSP01470 Mean Expected Number 0.006 +strand -50 : -41 TCATGCATtT Totally 4 motifs of 3 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transferase family protein |LOCUS: AT5G07080 |PROD: the same as GENE |2200333..2202111 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.33 C - 0.17 1 attttattca atacaaaagt gttgaaaggg attcggataa accaagcatt 51 tttatgtgta tagaaaaata atacttgact ttgcagtttc catttccaat 101 cttcaaagtc atatcttacc aaactcacat ctctagctaa tatatcccct 151 atattttgtt acaaaTATAT ATAtatatat atatcttaca caaagacagt 201 GCATGTGATA TAGAAATCAA GATGGGAAGC CAAGGCATGA GTTCACCGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 -strand +5 : -2 CATGCAC AC RSP00115 Mean Expected Number 0.001 +strand +10 : +20 ATAGAAATCAA Totally 2 motifs of 2 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: IPK2a |LOCUS: AT5G07370 |PROD: inositol polyphosphate 6-/3-/5-kinase 2a (IPK2a) |2330400..2332282 |SUPPORT | 1 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +852 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.35 C - 0.14 1 tatattatta cataaatact caatgataaa ctaattttgt ttatgattta 51 aagatggtta aaaccggttt actctattga gttttcgtcc tcagcagtct 101 gcatctgact tttaagtttt aattaaacat aaattaaata aaagagagaa 151 taaTATAATT Atccagctag attgcttcgt tgcctcaaag gaaaaagtaa 201 CAAAAGACAA AAACTTTCAA TTATGTGAAG AATCGTACAC CTTTCTTATC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pectinesterase family protein |LOCUS: AT5G07410 |PROD: the same as GENE |2345765..2347498 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.52 G - 0.11 T - 0.23 C - 0.15 1 cctttgtaaa catttgaaac ttaagaaatt tctggtcaat aaaatgtaaa 51 gttgaaaaag taatagaaat attcttagag aaattatagc aggatggaaa 101 aatggatcac cacaaACAAT aatagcaaac gaaaacgaaa ttcaaaaaaa 151 ttcaggtctc tgaaacaaTA TATATAccca tagccatctt tccatcaaat 201 CATCCAGAAA AAACAAAAAA AAACAAAAAA ATAATAAAAC AAAAAAATAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00439 Mean Expected Number 0.006 +strand -132 : -125 ATATTCTT AC RSP00495 Mean Expected Number 0.005 +strand -156 : -149 TGTAAAGT Totally 2 motifs of 2 different REs have been found Description of REs found 419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pectinesterase family protein |LOCUS: AT5G07420 |PROD: the same as GENE |2349456..2351509 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.30 C - 0.22 1 tacttgattt ccaaattcat cacaattcac acaccaagtc cataagaaat 51 gactgcttcg agggatataa accacaaatg agaatgcaaa agaaaaaaat 101 accacacacg agaatagtaa aaagagatct atccggtcat gcatcgacga 151 tcccgaccac tgcaagtaTA TAAAATgtcc cttcaaggct tcttcatctc 201 TTCCATTTTT ATTCCCAAAT TAATAAATAT CTTTTTTTCT TTTATTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00350 Mean Expected Number 0.000 -strand -52 : -62 CGTCgATGCAT AC RSP00961 Mean Expected Number 0.004 +strand -116 : -109 TGCAAAAG AC RSP01064 Mean Expected Number 0.000 -strand -65 : -76 CcGGATAGATCT AC RSP01167 Mean Expected Number 0.008 +strand +24 : +32 TAAATATCT Totally 4 motifs of 4 different REs have been found Description of REs found 335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 983. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01064//OS: Arabidopsis thaliana /GENE: SEX1/RE: Fungus RE /TF: homeodomain TF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted proteins |LOCUS: AT5G08320 |PROD: the same as GENE |2677053..2678679 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.32 C - 0.22 1 ttcatgctct gttgtacaga caacttcttc ttgttgcaaa taacaaaaca 51 ccttaaaggc taaaattaaa tactgatttt tacgaaatgg gcttcttaat 101 ttcttaaggc ccatatatct ttccatctga ACAATttgta agcccaatta 151 gaagccactg taagttaTAT AAAACgaagt ttgtcatcgt cttcgtcggt 201 GAACCTCCGA TTTGACTGCA CCGTCGGAGC TCGACGCTGA GCTAAGCTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00857 Mean Expected Number 0.007 +strand -78 : -69 CCATCTGAAC Totally 1 motifs of 1 different REs have been found Description of REs found 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ferredoxin-thioredoxin reductase, putative |LOCUS: AT5G08410 |PROD: the same as GENE |complement(2709849..2710584) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.38 C - 0.20 1 aagatattta cagtgttgat tctctatctg aagccacaag ttcctcatct 51 cttacattgt cttaagtctg acacgcgtcg cctttcttta tccaaaaata 101 atccgacttt taatttaaac caaataatta gcaaaattag taatcacctt 151 gattaaatta accatctaaT ATAAATAgat gaggggctaa atgatatgat 201 CTTTTTTGTT TTCTCTCACA CTTTCTTAAG ATTTTTTTCT TCGGCTCGGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand -73 : -58 TTAgCAAAATTAGTAA AC RSP00085 Mean Expected Number 0.006 -strand -58 : -73 TTACTAATTTTGcTAA AC RSP00143 Mean Expected Number 0.001 -strand -122 : -131 GACGCGTGTC AC RSP00523 Mean Expected Number 0.003 +strand -130 : -124 ACACGCG AC RSP00756 Mean Expected Number 0.005 +strand +15 : +22 CTCACACT AC RSP01068 Mean Expected Number 0.008 +strand -134 : -126 TCTGACACG AC RSP01167 Mean Expected Number 0.005 -strand -191 : -199 TAAATATCT Totally 7 motifs of 6 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G08540 |PROD: the same as GENE |2763824..2766156 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.35 C - 0.20 1 gatttaacat gggagtaaca aaaaattcta gcttgtgtgg gtaattaatc 51 catttgttat tatgtctgct gtctgctgaa ttcacttttt cttcttgtta 101 aaaaccattt gatgatcgtt tatagttaaa ataaatgggc cgagtaaaaa 151 aggcccatta atgacccctt caAATAAATA gaaattgtta tatcttcttc 201 CTTCACCTTC CGTCGTAGTT CCCCGACAAG CTAACTACTG TTGAGCCCCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00020 Mean Expected Number 0.000 +strand -62 : -51 GcCGAGTAAAAA AC RSP00681 Mean Expected Number 0.005 +strand -159 : -151 TAATTAATC AC RSP00858 Mean Expected Number 0.007 +strand -161 : -154 GGTAATTA Totally 3 motifs of 3 different REs have been found Description of REs found 19. Group TF: GT-1 /AC: RSP00020//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box6 /TF: GT-1 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G09370 |PROD: the same as GENE |complement(2909364..2910543) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.25 C - 0.21 1 aaaaatattt tgaccagaaa aaaagaagaa ggaaagaact cttaatatag 51 gataaaatcc aaataaaaat gagcaaggat ctttacattg aaaagaacca 101 aaaaaaatta cgcgttacac atgacgtgta caccaaaacc gacgtcgtct 151 ctatcacttg aaacccataT ATAAACAcag cacatttcac tcattctatc 201 ACAACTCTCA TTTTCTTCTC TCTCGATTCT TGATATATCA GTAACCAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.006 -strand -22 : -33 TGTGtTTATATA AC RSP00383 Mean Expected Number 0.008 -strand -186 : -192 GGTCAAA AC RSP00423 Mean Expected Number 0.008 +strand -78 : -73 GACGTG AC RSP00424 Mean Expected Number 0.008 -strand -73 : -78 CACGTC AC RSP00613 Mean Expected Number 0.003 -strand +34 : +27 ATCAAGAA AC RSP01072 Mean Expected Number 0.005 +strand -94 : -85 ATTACGcGTT AC RSP01258 Mean Expected Number 0.000 +strand -79 : -72 TGACGTGT AC RSP01275 Mean Expected Number 0.001 -strand -71 : -80 TaCACGTCAT AC RSP01703 Mean Expected Number 0.000 +strand -62 : -53 CCGACGTCGT Totally 9 motifs of 9 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phosphate-responsive protein, putative |LOCUS: AT5G09440 |PROD: the same as GENE |2938348..2939462 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.27 C - 0.27 1 actacttgat aatacacgtt tatggaaact accacgtcac cctaagaaga 51 accttactac aggctgtcca aaaacttgcc taaccaatta aatatatcca 101 cgtggcatac gttgacatgt acgctctttg cattttacag ctcttgcccg 151 ttcaaaaaac ctcggtaTAT AAATAagctc tcaatggttt cacaaaactc 201 ATATTCAAAA ACAGAACACA ACCTCTCTTC TCACTCTATA TACTCCCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -104 : -95 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -95 : -104 GCCACGTGGa AC RSP00153 Mean Expected Number 0.002 +strand -103 : -94 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -102 : -95 CACGTGGC AC RSP00189 Mean Expected Number 0.003 +strand -104 : -95 TCCACGTgGC AC RSP00214 Mean Expected Number 0.005 -strand -162 : -169 TGACGTGG AC RSP00215 Mean Expected Number 0.005 +strand -169 : -162 CCACGTCA AC RSP00340 Mean Expected Number 0.004 +strand -104 : -95 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 -strand -95 : -104 GCCACGTGGA AC RSP00683 Mean Expected Number 0.004 -strand -95 : -104 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -103 : -96 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -96 : -103 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -104 : -95 TCCACGTGGC AC RSP00938 Mean Expected Number 0.000 -strand -94 : -105 TGCCACGTGGAt AC RSP01034 Mean Expected Number 0.002 +strand -101 : -95 ACGTGGC AC RSP01280 Mean Expected Number 0.001 -strand -160 : -170 GGTGACGTGGt AC RSP01593 Mean Expected Number 0.000 +strand -104 : -93 TcCACGTGGCAT AC RSP01726 Mean Expected Number 0.000 -strand -94 : -105 TGCCACGTGGaT Totally 18 motifs of 16 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S15 (RPS15B) |LOCUS: AT5G09490 |PROD: the same as GENE |complement(2952219..2953246) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.36 C - 0.13 1 agaaaaaaag aagtttttct attataaggg aagaaaaata tttaaatatt 51 gattcatatg ttattttaga aagacaataa tgtaataatt ggtaaatatt 101 tATTGAcgtt tccttaaaca gaaacactgt aggatctata atacatctgt 151 gtaTATATAT Atatatatat atatatattg ggtgccaagt tatgtctctt 201 GTCGTATCTC CATAGCAAAA CCCTAGTTGC AGTCACTTTC CCGGCTTCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01086 Mean Expected Number 0.008 +strand -98 : -89 TTgACGTTTC AC RSP01640 Mean Expected Number 0.004 +strand -11 : -2 tTATGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S15 (RPS15D) |LOCUS: AT5G09510 |PROD: the same as GENE |complement(2955114..2956674) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.35 C - 0.16 1 tctataatct actggtttgg attaatacaa ttgagagata agtactaaca 51 acttaaaaac atttttcagt ctattataaa ctaatttgac aacaaagttt 101 ttaatctgaa aatacataat ttaacttgga tttataaaag tcaagtcaaa 151 ttcactaacA ATAAATAtct ttaaaataat ttcacttcta gggtttagcc 201 AAGGTCCTCG TATATATTTG GATCCGCCGA ACAAGGCATC TTCTTCGCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.010 +strand -110 : -101 AACAAAGTtT AC RSP00559 Mean Expected Number 0.007 -strand -85 : -95 TGTAtTTTCAG Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RPB15.9 |LOCUS: AT5G09920 |PROD: RNA polymerase II 15.9 kDa subunit (RPB15.9) |3096184..3097576 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.41 C - 0.17 1 aaaatcattg cctattcaaa cttgatgatt attattcggt ttatttcaat 51 ttttctctat tactaacata gtaacattta tctaattaac ctctcttccc 101 caaaaaaaat ctaattaacc tccttggatt ttcctttttt aattatagag 151 tttgcttctt ttttttTATA TATAaccggt caaagctttt gttttgtctc 201 ATATTCATCA CTTTCGTTGT TAAGACGGAA AAAAAAAAAA AAGAGGCAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00241 Mean Expected Number 0.009 +strand -24 : -19 CGGTCA AC RSP00383 Mean Expected Number 0.006 +strand -23 : -17 GGTCAAA AC RSP00445 Mean Expected Number 0.006 +strand +37 : +46 AAAAAAGAGg AC RSP00888 Mean Expected Number 0.008 +strand -96 : -88 AAAAATCTA AC RSP01056 Mean Expected Number 0.004 -strand -123 : -133 AATGTTACTaT AC RSP01094 Mean Expected Number 0.010 -strand -113 : -124 TAATTaGATAAA Totally 6 motifs of 6 different REs have been found Description of REs found 234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: serine-rich protein-related |LOCUS: AT5G11090 |PROD: the same as GENE |3524681..3525847 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.31 C - 0.20 1 ccgcctcaaa ttgaaaaaca aattagtaat ttattttgct aaccatagtt 51 aagtttcatt aaccatggtt aaatttgact aacccgacat agaaatacct 101 aaatttcgaa aatggtcaaa gtctttgaac gtatttacat ttATTGCcat 151 tgaacaagct tttgcTATAA ATTcggttcc tgagactcgc taggtttgcc 201 GAACCAACCT CCCTTAGGCA CTTTCTACAG AGCAGCTAAT CAAAAAAAAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NADH-ubiquinone oxidoreductase 20 kDa subunit |LOCUS: AT5G11770 |PROD: the same as GENE |complement(3790807..3793001) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.30 C - 0.13 1 aaccacaatc aaaaacttaa tacttttaaa gatttgataa attttctgtc 51 taaatagttt ttgtaatgag aaagttacaa gagtaaatta ttattgccaa 101 gtcATTGTtt tatgaaataa atgaaatact gtacaaaagg tgaaaaaaaa 151 tgatacgatt acgagtcaTA TAAATActtc gccacctgcg tttagtaaat 201 GGTTAGAGAC TCGTTTGGTT ATCACAACTC CACGACGAGA GGAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.010 +strand -66 : -55 AAAAGGTgAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G11890 |PROD: the same as GENE |3831665..3832945 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.10 T - 0.27 C - 0.18 1 aattttttca gaaataaatg gggccacttt gtaagtaata aatcagctta 51 cattaattat tttaccaccc aataaaaaga ttccacagac ttggcatgga 101 agtcatgaac attcacaaaa atctaagaaa aactgaaaac cgaaaaaaaa 151 acaaattatt aaaaagcAAT AAATAaataa actcagaaaa aaaagctatt 201 AAGATTCCAC AAAAACTCTG TATTGTCTCT TTCTCTCTCA CTATCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00307 Mean Expected Number 0.006 -strand -106 : -111 GCCAAG AC RSP00709 Mean Expected Number 0.009 +strand -147 : -139 TAATTATTT AC RSP00751 Mean Expected Number 0.007 +strand -64 : -53 AAACCGAaAAAA AC RSP00861 Mean Expected Number 0.001 -strand +34 : +26 AGAAAGAGA AC RSP01006 Mean Expected Number 0.010 +strand -137 : -131 ACCACCC AC RSP01641 Mean Expected Number 0.001 +strand +21 : +30 TaTTGTCTCT Totally 6 motifs of 6 different REs have been found Description of REs found 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G11970 |PROD: the same as GENE |complement(3863072..3863756) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.09 T - 0.45 C - 0.16 1 ttcttaattt gtctgaaatt tcacactcta gtaaattttc ttaattttat 51 tatcttctgt ttcttaatta ttaaaatttt ccaaacgcgt tagcgttata 101 ataatatctg ttacattttt tcttatttgc tttttcttat ctccatttgc 151 tttatttgtt ttctctctTT TAAATTacag aaaacaaatg aaaataattc 201 ATATAACGTG GAGCAACAAA TTGAGACCAG CTCAAAAGAC ACGTCCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.003 -strand -142 : -150 CAGAAGATA AC RSP00559 Mean Expected Number 0.005 -strand -178 : -188 TGaAATTTCAG AC RSP00821 Mean Expected Number 0.000 +strand +38 : +47 GaCACGTCCT AC RSP01013 Mean Expected Number 0.001 -strand -52 : -61 CAAATGGAGA AC RSP01014 Mean Expected Number 0.003 +strand -16 : -7 CAAATGAAaA AC RSP01015 Mean Expected Number 0.003 +strand -16 : -7 CAAATGAAAa AC RSP01035 Mean Expected Number 0.002 -strand +44 : +38 ACGTGTC AC RSP01275 Mean Expected Number 0.001 -strand +12 : +3 TCCACGTtAT AC RSP01734 Mean Expected Number 0.001 -strand +12 : +6 TCCACGT Totally 9 motifs of 9 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G12050 |PROD: the same as GENE |3890105..3891514 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.30 C - 0.22 1 aaatcattag tttctcacat tatgaggaaa atgacatata aattgggcat 51 tggacaacat attattaggt acatgcacac ataaacaaat tgaagtatcc 101 tctagtatgg tcctaacaTC AATatggtca gcatacgtga acaacacgcg 151 ccgagatcgt tgctTATATA TAcgtcctct ctccctcttc ttctatcttc 201 ATTCGTCGTC TTCTTTCTGC AAGAAAAACA AAAAAACAGT TACGAGACAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.002 +strand +31 : +42 AAAAAACaGTTA AC RSP00523 Mean Expected Number 0.006 +strand -57 : -51 ACACGCG AC RSP00572 Mean Expected Number 0.008 -strand -162 : -169 ATATGTCA AC RSP01014 Mean Expected Number 0.008 -strand +5 : -5 CgAATGAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT5G12190 |PROD: the same as GENE |complement(3940533..3941206) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.32 C - 0.21 1 ttagtaggtt gatcaacact gaaaggcgtt caggtttttg ccatcaaacc 51 agaaatagat atcggtttgg taaattactt ttggttttaa tggtttacat 101 aaaatcgTCA ATcaaaatcc cccaagcctg cattcggaaa gacgattata 151 ccctttaatt cttccacccT ATAAATActc gcatcgcatc aatcgtaatc 201 AGAACTATTA ACTTTCATTT TCCGATAGAA GAACTTTTTT CACGGCGGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.007 +strand +44 : +49 GGCGGC AC RSP00807 Mean Expected Number 0.007 -strand +49 : +44 GCCGCC AC RSP01296 Mean Expected Number 0.005 +strand -32 : -24 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -32 : -23 CTATAAATAC Totally 4 motifs of 4 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: geranylgeranyl transferase type II beta subunit |LOCUS: AT5G12210 |PROD: the same as GENE |3947108..3949855 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.35 C - 0.08 1 aaattgagat gaaaaaaatt tgatctgaga aattaaattt ttttttgttg 51 agaataaaag atccaaaatt gttatggatc tagatccaac atagaggttg 101 ggttgtaaat aagtaaaaaa ctctagtttt acttgtcttt tattattatt 151 ctgatttaaA ATAAATAaat aaacatatgt ttttttataa ggggctaact 201 AGAGAATGTT TGAAGCTGAG GGGGTGGACT AGATTAAAAT CCTAAGCTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.001 +strand -87 : -76 TAAaAAACTCTA AC RSP00574 Mean Expected Number 0.008 -strand -48 : -55 CAGAATAA Totally 2 motifs of 2 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: leucine-rich repeat family protein |LOCUS: AT5G12940 |PROD: the same as GENE |4087715..4089007 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.24 C - 0.19 1 atttgtaatg aatcataatg atccaatctt gaccacacac aaagaaaagt 51 ctgataataa tgaaacaaat gagcatgcaa agtatgtgac gacgtggcaa 101 aaaatgagaa ggttcaacga agcaacaaaa agaagtattt cgtcgtcttt 151 actcccatca atatgtgacT ATAAATAaaa ccatatagtt aagtcacact 201 TCCATGTCAA CGTGCTTCAA CCTATGTAAA GCTAAAAAAA AAACACATCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00819 Mean Expected Number 0.002 -strand -103 : -112 GCCACGTCgT AC RSP00821 Mean Expected Number 0.001 -strand -103 : -112 GCCACGTCgT AC RSP00866 Mean Expected Number 0.002 -strand +15 : +8 GCACGTTG AC RSP00913 Mean Expected Number 0.002 -strand +11 : +2 GTTGACATGG AC RSP00986 Mean Expected Number 0.000 -strand -104 : -111 CCACGTCG AC RSP01034 Mean Expected Number 0.003 +strand -109 : -103 ACGTGGC AC RSP01296 Mean Expected Number 0.009 +strand -32 : -24 CTATAAATA Totally 7 motifs of 7 different REs have been found Description of REs found 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nodulin MtN3 family protein |LOCUS: AT5G13170 |PROD: the same as GENE |complement(4181045..4183309) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.33 C - 0.21 1 acgctaccta ctaatatctc cacttgtcat gcaaccagac tgagttcgtt 51 ttccttttcg agtcttattt ttttgttttt tattctactc aacacgttac 101 acgcttctaa taaactctaa acattaaaat caaaatattt tgactACAAT 151 ggttattttg gagcTATATA TAaaccacct gagcctcctc agtttcctcc 201 ATGAAATAAA AAGAAGCATC TTCTAGAGAG AGACATATAG AGAAAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -182 : -173 tCCACTTGTC AC RSP00192 Mean Expected Number 0.003 +strand -93 : -82 TAAtAAACTCTA AC RSP00340 Mean Expected Number 0.004 +strand -182 : -173 TCCACtTGTC AC RSP00683 Mean Expected Number 0.004 -strand -173 : -182 GaCAAGTGGA AC RSP00861 Mean Expected Number 0.001 +strand +41 : +49 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +25 : +33 AGAGAGAGA AC RSP01640 Mean Expected Number 0.003 -strand +38 : +29 aTATGTCTCT AC RSP01751 Mean Expected Number 0.001 +strand -182 : -174 TCCACTTGT Totally 8 motifs of 8 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G13440 |PROD: the same as GENE |complement(4308132..4310184) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.32 C - 0.16 1 atcaaatttc aatgagattg tttttgttta gatttgaatc gttgggctaa 51 tttggtaaat aaatctacaa actatgccca agtagcttat tcatactcac 101 gaatgaacat taagatgcca cgaagctaca taattatcat gttagaacac 151 cgtcattgtt ctcttcagTA TTAATAgtaa aaaaaccaaa ttgacgattt 201 CTCGAAGACT ATTAAAGGAA TATCCGCAAA GAAGAAAAAA AAACATTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.008 -strand -179 : -186 AACAATCT Totally 1 motifs of 1 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G13610 |PROD: the same as GENE |4383016..4385032 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.30 C - 0.23 1 agacccataa atactcggtt acccaaaaaa aaaattctag atcctgaatt 51 ctgatacact gccgtttttt caattctatc ttcacaatgc ttgtcgttta 101 cacataacag cacgttgtta gtccgtgaaa taaacaaacg gcacgcataa 151 accccaatac tcaaacaagT ATTAATAatt ctgctattag gcagagagag 201 GGCGGCTCTG TTGTTGATCT TCTTCTCCGG TGACTCTTAC TCTCTGTGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 -strand +7 : +1 AGCCGCC AC RSP00055 Mean Expected Number 0.003 -strand -19 : -30 AGAATTATTAAt AC RSP00438 Mean Expected Number 0.008 +strand +1 : +6 GGCGGC AC RSP00807 Mean Expected Number 0.008 -strand +6 : +1 GCCGCC AC RSP00866 Mean Expected Number 0.001 +strand -91 : -84 GCACGTTG AC RSP00881 Mean Expected Number 0.004 -strand +18 : +9 ATCAACAACa AC RSP00940 Mean Expected Number 0.005 +strand +23 : +32 TTCTcCGGTG Totally 7 motifs of 7 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ANAC084 |LOCUS: AT5G14000 |PROD: no apical meristem (NAM) family protein |4518010..4519302 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +169 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.35 C - 0.21 1 aatggacatc cctcaaaagc accttccttt tttttcctat tctttctcat 51 catctttctt attatgaact aaaataaatg ttcagacaaa ggagccattt 101 ctaccattta taattttata ttacacaact atatgtgtgt ttgtgtgtgt 151 gtgtagccgt ggggattTAT ATATAcatat aacatatatt gacaacctct 201 ACTACTGTCA TTTAGCCTGC AAAGCCCACA AACAAAGGGC TACACAAGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.009 +strand +18 : +24 TGCAAAG AC RSP00933 Mean Expected Number 0.006 +strand -94 : -82 TTTATAATTTTaT Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glutaredoxin family protein |LOCUS: AT5G14070 |PROD: the same as GENE |4541838..4542516 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.07 T - 0.33 C - 0.27 1 ctcaaatgtc tcttaaaaat atcatcctat cataacaaaa gctagcaacc 51 atgatggtcc atgactatca catcaataac tttgttatca tttggcatat 101 cctctctaat aatatgccat tttaaaataa attaaaacct accagttaaa 151 tttagaactt caccatgTAT AAATActctg catgcctctc actctctccc 201 CAACCAACTC TCACACAAAT TCTCTCGCTC TCTCACTCTC TTATTCTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.006 +strand -106 : -97 GCATATCCTC AC RSP00288 Mean Expected Number 0.010 +strand -146 : -141 TGGTCC AC RSP01236 Mean Expected Number 0.006 -strand -131 : -140 TgATAGTCAT AC RSP01435 Mean Expected Number 0.001 +strand -4 : +6 TCCCCAACCA AC RSP01642 Mean Expected Number 0.006 +strand -197 : -188 AAATGTCTCt Totally 5 motifs of 5 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cinnamoyl-CoA reductase-related |LOCUS: AT5G14700 |PROD: the same as GENE |complement(4740255..4743449) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.35 C - 0.21 1 taataaatat acaccgtaga tgggatcgta ttcgtataaa gaaaggaagc 51 caagctgagc cgataaagct gaattgtatt acacttgtct tatttttttc 101 ttcaaaaaaa tgagagactc tttagcattc tcgtgtgatg tgtaacggcc 151 tctgtttctt tctctcTATA AATAtcttct tcctcatttc tcaatcctct 201 GTGTATCTCT TTCTACCTTC TCTGAACCTA TAGAGCCAAC GAAACCAGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.007 -strand -38 : -46 AGAAAGAAA AC RSP00861 Mean Expected Number 0.004 -strand +14 : +6 AGAAAGAGA AC RSP00862 Mean Expected Number 0.001 +strand -161 : -153 AGAAAGGAA AC RSP00940 Mean Expected Number 0.004 -strand -180 : -189 aTCTACGGTG AC RSP00943 Mean Expected Number 0.006 +strand -17 : -7 TCATTTCtCAA AC RSP01167 Mean Expected Number 0.005 +strand -32 : -24 TAAATATCT AC RSP01296 Mean Expected Number 0.004 +strand -35 : -27 CTATAAATA AC RSP01596 Mean Expected Number 0.006 -strand -7 : -17 TTGaGAAATGA AC RSP01602 Mean Expected Number 0.008 +strand -12 : -5 TCTCAATC Totally 9 motifs of 9 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: P5CR |LOCUS: AT5G14800 |PROD: pyrroline-5-carboxylate reductase |complement(4785965..4787840) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +219 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.27 T - 0.18 C - 0.24 1 acgatgcatc aggattgggg ggcaactgtt aggggtcgga ttgggcctac 51 ttggcccaat gcccaaaccc aagtcaaaag cccaaaataa gttccaaacc 101 aaggagtatt aaggcgaagg gtagtttcgt caaatccctc gatgaatgcc 151 ctacacgcgc agaaggcTAT AAATAcggaa tagcatgtct tgtcaaaggg 201 GGAGGCCGCG AGGACACTTA GAGACAAAGA GCAGCTCGTC AGCTCACCCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01000 Mean Expected Number 0.008 +strand -55 : -46 ATGCCCtACA AC RSP01032 Mean Expected Number 0.001 +strand -119 : -110 CCAAAATAAG AC RSP01134 Mean Expected Number 0.006 +strand -110 : -101 GTTCCAaACC AC RSP01296 Mean Expected Number 0.001 +strand -34 : -26 CTATAAATA AC RSP01301 Mean Expected Number 0.007 +strand -34 : -25 CTATAAATAC AC RSP01640 Mean Expected Number 0.010 -strand +29 : +20 CTtTGTCTCT Totally 6 motifs of 6 different REs have been found Description of REs found 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: gibberellin-regulated family protein |LOCUS: AT5G14920 |PROD: the same as GENE |4826546..4827983 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.37 C - 0.18 1 ttatcaatat aatccatttt tgggaatctg atattttgtt tatcctcgag 51 ctctgagaga tatattttgg tgcagtgaag gttcaaagct ggcatgcatg 101 atgcatataa taactgctct ggacctaata cttactacgc atttaaatta 151 atatttatgg ataatatggt tAATAAATAa ggaacttcta tttatatcac 201 AAAAGGTCAC TGGTCTTCTT CGTGTGACTT CACCACTTTC TCATCTCCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 +strand -1 : +6 CAAAAGG AC RSP00108 Mean Expected Number 0.002 +strand -108 : -101 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -101 : -108 CATGCATG AC RSP00122 Mean Expected Number 0.005 +strand +45 : +51 CTCCCAC AC RSP01033 Mean Expected Number 0.008 +strand -187 : -178 CCATTTTTGG AC RSP01074 Mean Expected Number 0.001 +strand -109 : -100 GCATGCATGa AC RSP01074 Mean Expected Number 0.001 -strand -100 : -109 tCATGCATGC AC RSP01470 Mean Expected Number 0.007 -strand -100 : -109 TCATGCATGc Totally 8 motifs of 6 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G15050 |PROD: the same as GENE |complement(4871642..4873601) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +144 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.10 T - 0.27 C - 0.16 1 aaatagaaac tttgactggg ataaaatgta cttaaactat cagataaata 51 acacatgata ctgtataatg aatattaaat cattgtcaaa acatacataa 101 atcggataaa atttagaaga aaaaagtaaa aattacaaaa ataccgtgaa 151 acattttttt ttgtaaTATA AAGAtatcga acatacgaaa agaacagacc 201 AACAAACAAA CAAAAACACA CCAATTCCTT CATTCATCTT CTCCATTTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 +strand -80 : -69 AAAAAGTAAAAA AC RSP00378 Mean Expected Number 0.010 +strand -190 : -184 TTTGACT AC RSP00459 Mean Expected Number 0.002 +strand -189 : -180 TTGACTGGGA AC RSP01013 Mean Expected Number 0.002 -strand +49 : +40 gAAATGGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 363. Group TF: WRKY1 /AC: RSP00378//OS: Petroselinum crispum /GENE: WRKY1/RE: WB /TF: WRKY1 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glycosyl transferase family 8 protein |LOCUS: AT5G15470 |PROD: the same as GENE |complement(5021013..5024745) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +574 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.35 C - 0.12 1 aatgatcttg aacagaacat attattcttt atgtaattaa ttgatcagtt 51 taatagtcaa ttttaataat taagtatgat taaaattagt ttatatcaat 101 catttaagag gaaagatgaa aaagcaaaac tcttgcttag ccatgaaaat 151 aggtggagac aatgtTATAA TTAgctctct ataaaacaat ccctaaactc 201 AAGGTCAAGA CACCAATTTA TTTAATTATA ATTTTAGATC TTGAAATTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.007 +strand -118 : -105 AAATTAgTTTATAT AC RSP00260 Mean Expected Number 0.009 -strand -4 : -10 TTTAGGG AC RSP01233 Mean Expected Number 0.006 -strand -64 : -70 AGCAAGA AC RSP01757 Mean Expected Number 0.001 +strand +4 : +11 GTCAAGAC Totally 4 motifs of 4 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S19 (RPS19B) |LOCUS: AT5G15520 |PROD: the same as GENE |complement(5037024..5038170) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.22 T - 0.29 C - 0.16 1 tataactttc agtagctaaa ataataatta agactgaact acacttttaa 51 ctgaaacgga gcgtataagc cgcttaaata gatttaatgg cccataatgg 101 gttaggcggg tcgattcggg ttcagtgtgt ccgaaaaaaa ccctaATTGA 151 aaattgattg ctcagaTATA TATAgacttt gtgactgaaa attgaaagct 201 CTTGGCTTAA CTTAACGGAG TGATTCGTGA AATGGCGACT GGTAAAACCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -55 : -63 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -63 : -55 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 +strand -64 : -55 aAAACCCTAA AC RSP01621 Mean Expected Number 0.006 +strand -161 : -152 TACACTTTTa Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G15600 |PROD: the same as GENE |5078203..5079094 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +205 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.30 C - 0.25 1 acggctcatg attaataatc attttggtcc atcaaaccgg tttttaccca 51 aaaaaaaacc gggtaaaatt taagcgattt accaaacaac taaccccaca 101 cgtgcctacc ataaacttca tgcctatttc tcaccacaca ctatcttaca 151 cgtgtagatt gTATATATAc acattcatgt gtgtatctcc ttgttcctct 201 GTTTCTTTAC CTTTACTTGC GGCCAATCGT AGAAGAAGAA ACAAATCAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.008 +strand -103 : -97 ACACGTG AC RSP00524 Mean Expected Number 0.008 +strand -53 : -47 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -46 : -52 ACACGTG AC RSP00707 Mean Expected Number 0.000 +strand -54 : -45 TACACGTGTA AC RSP00707 Mean Expected Number 0.000 -strand -45 : -54 TACACGTGTA AC RSP00974 Mean Expected Number 0.002 +strand -54 : -45 TACACGTGtA AC RSP00974 Mean Expected Number 0.001 -strand -45 : -54 TACACGTGtA AC RSP01017 Mean Expected Number 0.008 +strand +37 : +44 AGAAACAA AC RSP01152 Mean Expected Number 0.003 +strand -104 : -95 CACACGTGCC AC RSP01185 Mean Expected Number 0.004 +strand -115 : -104 aCAACTAACCCC AC RSP01256 Mean Expected Number 0.002 +strand -53 : -46 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -46 : -53 ACACGTGT Totally 12 motifs of 7 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 673. Group TF: G-box binding TF /AC: RSP00707//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 2 /TF: G-box binding TF 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RGP2 |LOCUS: AT5G15650 |PROD: reversibly glycosylated polypeptide-2 (RGP2) |5092160..5094497 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.30 C - 0.25 1 attaatagca ttattacaat ccctaattgt acgggacgaa taaaaaagta 51 gaaaactcaa gttcctttct ttaccataca gctttttcga ttggagttga 101 ataagtcttc atctgacacg tgtaaccctg gcacatgccg tccactaaaa 151 cacgtgcgag atctgTATAA ATCaaaccta cgcgtttcat ctctcttttc 201 AAAACTCACC GACGCGATCC GATCTCATCT CTCTCATTTC GAAACCATGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -158 : -147 AAAAAGTAgAAA AC RSP00049 Mean Expected Number 0.002 -strand -43 : -52 CGCACGTGTt AC RSP00331 Mean Expected Number 0.007 +strand +41 : +49 GAAACCATG AC RSP00340 Mean Expected Number 0.002 -strand -77 : -86 TaCACGTGTC AC RSP00524 Mean Expected Number 0.009 +strand -85 : -79 ACACGTG AC RSP00524 Mean Expected Number 0.009 +strand -51 : -45 ACACGTG AC RSP00524 Mean Expected Number 0.009 -strand -78 : -84 ACACGTG AC RSP00862 Mean Expected Number 0.003 -strand -131 : -139 AGAAAGGAA AC RSP01014 Mean Expected Number 0.009 -strand -86 : -95 CAgATGAAGA AC RSP01035 Mean Expected Number 0.009 -strand -80 : -86 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -85 : -78 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -78 : -85 ACACGTGT Totally 12 motifs of 9 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PAM1 |LOCUS: AT5G15930 |PROD: plant adhesion molecule 1 (PAM1) |5199749..5202452 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +583 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.37 C - 0.17 1 gtcaatgttc ctaacttgat catcttttct gttttgggtt ttcgaagaac 51 aatgtatttt atgctattaa accgaccggt cagagcagat tgaacctgaa 101 ccgatttcgt ttttatggtt tgcaaatgta aaaagtTCAA Tggataaagt 151 ttctgaagct ttttgattTA TATATAtatc tggaacgtga taatacgcgt 201 ATGAATGATC GATGTGATCT CCAAGTCCAA CGTCTCCTTT CTATTTACCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.008 +strand -35 : -24 ATTTATATAtAT AC RSP00157 Mean Expected Number 0.008 -strand -24 : -35 ATaTATATAAAT AC RSP01463 Mean Expected Number 0.004 +strand -35 : -23 ATTTATATATaTA Totally 3 motifs of 2 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G16080 |PROD: the same as GENE |complement(5252318..5253621) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.07 T - 0.35 C - 0.20 1 tagatatgct ttcaatgaca ataaaatccg gcattttaca agtaccgtag 51 attatagttt tgattcccaa ttgaaattcc ttatactata tttcttaaaa 101 tttttatttt ttccccctat atattcctat ttgaaagtat cttagataaa 151 tatatataca aacttctcta TATAAAGAag ttcaatgaat ctctcatctc 201 ACTCAATCCA AACTCAACCC ACAACGCTAC ACATTAAAAA ATAAAAAACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01162 Mean Expected Number 0.002 +strand -30 : -18 TATAAAGAAgTTC AC RSP01162 Mean Expected Number 0.002 -strand -116 : -128 TATAAgGAATTTC Totally 2 motifs of 1 different REs have been found Description of REs found 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase 57 (PER57) (P57) (PRXR10) |LOCUS: AT5G17820 |PROD: the same as GENE |complement(5887908..5890164) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.34 C - 0.18 1 tggcaaggaa tgttacaaag tcgctcgcac gcctttgcaa acgtttctaa 51 gcttaattat ctaaacaaat aatataacct ttgactttcg catgtattcg 101 gcatgtatat gaggtgtatt aatcttttag gctctaaatt atatttcgaa 151 ggttggcttT ATATATAtat atatacctta tggttgatct taaatgactc 201 ACAACCCTTT CCACAAGAAG TTATAAACCA ATACATAGAA GAAAACTTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00430 Mean Expected Number 0.001 -strand +2 : -7 GTGAGTCAT AC RSP00595 Mean Expected Number 0.003 +strand -150 : -142 GCTTAATTA AC RSP00871 Mean Expected Number 0.006 -strand +3 : -7 tGTGAGTCAT AC RSP00996 Mean Expected Number 0.004 +strand -18 : -9 GTTGATCTTA Totally 4 motifs of 4 different REs have been found Description of REs found 410. Group TF: BLZ1 /AC: RSP00430//OS: Hordeum vulgare /GENE: Hor2 gene/RE: GSN; hor1-box; /TF: BLZ1 ||Identical REs AC: RSP00883 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glutaredoxin family protein |LOCUS: AT5G18600 |PROD: the same as GENE |complement(6183265..6183956) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +180 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.31 C - 0.24 1 tgaaaagtaa agataagttc gaaaatcatt agattctcaa tcacttacat 51 tttgtgatcc aaaataaaat tgaacttgtt gtcgctttcg gacacgatat 101 ccttagaaac aaaatcccaa catatttccc catctaatCC AATaatatca 151 tcgtcttctc tgcctctaTA TAAACTaaca cttactcacc tatttcatat 201 ATCCACACAA CATTTACACA ATACCCTTAT TCTCCACGTA GAATCAAGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.002 +strand +33 : +42 TCCACGTAGa AC RSP00280 Mean Expected Number 0.005 +strand +33 : +42 TCCACGTAGA AC RSP00879 Mean Expected Number 0.003 -strand -111 : -117 CGAAAGC AC RSP01259 Mean Expected Number 0.001 -strand +41 : +34 CTACGTGG AC RSP01499 Mean Expected Number 0.006 +strand -75 : -66 TTCCCCaTCT AC RSP01735 Mean Expected Number 0.002 +strand -170 : -162 AGATTCTCA Totally 6 motifs of 6 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BMY3 |LOCUS: AT5G18670 |PROD: beta-amylase, putative (BMY3) / 1 |6225958..6228134 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +182 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.32 C - 0.19 1 ttaatagttt catttttcgt ggtcacactt gaagattaaa attgtcatta 51 aatgcaaaag cataaaaatg aaaaagtgaa atattaagcg gctacaagta 101 tgagagcATT GTggtaacga cacgtgtaat gtccaaatag gcaacgttta 151 tccactacct ttcatcttaT ATAAACAgat taacgtttct tttcttttct 201 TATATAAACC AAATCCATAA TCCTCACCAT ATCCACAATC CTCAAGCTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.002 -strand -73 : -82 TaCACGTGTC AC RSP00524 Mean Expected Number 0.006 +strand -81 : -75 ACACGTG AC RSP00524 Mean Expected Number 0.005 -strand -74 : -80 ACACGTG AC RSP00870 Mean Expected Number 0.010 +strand -132 : -123 TGaAAAAGTG AC RSP00961 Mean Expected Number 0.004 +strand -148 : -141 TGCAAAAG AC RSP01035 Mean Expected Number 0.006 -strand -76 : -82 ACGTGTC AC RSP01058 Mean Expected Number 0.008 -strand -44 : -51 TAGTGGAT AC RSP01086 Mean Expected Number 0.007 +strand -21 : -12 TTaACGTTTC AC RSP01256 Mean Expected Number 0.002 +strand -81 : -74 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -74 : -81 ACACGTGT AC RSP01601 Mean Expected Number 0.008 -strand -120 : -127 TTTCACTT AC RSP01639 Mean Expected Number 0.009 +strand -161 : -152 AATTGTCATT Totally 12 motifs of 10 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: sugar transporter, putative |LOCUS: AT5G18840 |PROD: the same as GENE |6282883..6286709 |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.11 T - 0.35 C - 0.24 1 caagtcagtg agagcttcat cacagtcccc acatgagaac tatttttgtc 51 agtattaatc tcaatcatta tcgcatttaa tatttcatta atctattttg 101 ccgtcgaagg acaaatATTG Taaaaatctt cgtcccatgt cgagacttta 151 catacatcta ttaccTATAA ATAcctaatt cacgaaccaa agtactcttc 201 ACATCTATCT CTTTCTCTCT CTTTCCTTGC AAATTTTCAG CTCTCAAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.010 +strand +13 : +23 TTCTCTCTCtT AC RSP00861 Mean Expected Number 0.006 -strand +16 : +8 AGAAAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +22 : +14 AGAGAGAGA AC RSP01201 Mean Expected Number 0.002 -strand -182 : -189 TGAAGCTC AC RSP01296 Mean Expected Number 0.006 +strand -36 : -28 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -36 : -27 CTATAAATAC Totally 6 motifs of 6 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ACL5 |LOCUS: AT5G19530 |PROD: spermine/spermidine synthase family protein |complement(6588960..6591183) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.31 C - 0.22 1 aggaagtgtt gaaacgttaa aatgccaaaa tataagcatg cgacggaatt 51 ttggcagaag attgtagagt tgtaatctgt cgcaatcatt actcatgcta 101 gcatttttca ttttcccttc atttgtggat aacgcacgat ataacattct 151 acacaccaac aagattcTAT AAAAAcgcaa aggttgtctc catagaatat 201 CGTCCCATCA CCAAACATTA AGTAGCACTC TTTTTCCTCT CTATATCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.009 -strand -70 : -76 TATCCAC AC RSP00863 Mean Expected Number 0.002 -strand +42 : +34 AGAGAGGAA AC RSP01014 Mean Expected Number 0.009 -strand -76 : -85 CAAATGAAGg AC RSP01015 Mean Expected Number 0.009 -strand -76 : -85 CAAATGAAgG AC RSP01031 Mean Expected Number 0.008 -strand -33 : -40 AGAATCTT AC RSP01086 Mean Expected Number 0.007 -strand -181 : -190 TTaACGTTTC Totally 6 motifs of 6 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxisomal membrane 22 kDa family protein |LOCUS: AT5G19750 |PROD: the same as GENE |6677071..6679373 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.27 C - 0.24 1 agttcctcta tttcttttgc ttaaaatttg tttcttttga ttaaagttaa 51 accctgaaac gctttgaaaa cctccggtga gatcaataca ctccggcgtc 101 gcttcgatgc atatcagcat atgaagaccc atataaaacc ccattactaa 151 agcccaTATA AAAGcccaaa atacaaccgg aagctagatt caggagttct 201 ATACTTGTAA AAGCTAGAGT CAACGCCGTT CAGTCTCAGA CCAGACGAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.005 +strand +6 : +13 TGTAAAAG AC RSP01014 Mean Expected Number 0.009 +strand -83 : -74 CAtATGAAGA AC RSP01017 Mean Expected Number 0.004 -strand -166 : -173 AGAAACAA AC RSP01104 Mean Expected Number 0.008 +strand -133 : -126 AAACCTCC AC RSP01600 Mean Expected Number 0.007 -strand -132 : -139 TTTCAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G19880 |PROD: the same as GENE |complement(6720386..6722477) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.36 C - 0.17 1 aaacaaaaag aagcaaattt tagtaactta atagaatgct tatcattata 51 ttatgatttt tcgtgtcctt caaaaagaaa agtaaaagtc tagacgaatt 101 gaactgaaat gttttgtatt tttcctggta catgtagaat tttcttcaaa 151 cattaggtat aagctctcTA TAAAAGgcta cgaaagtctt tcattttagc 201 ATCAACTCCT CTAATAAGCT TCTTCTTTCT ATCCCTCACT TTTACAAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00870 Mean Expected Number 0.001 -strand +46 : +37 TGTAAAAGTG AC RSP01644 Mean Expected Number 0.000 -strand -52 : -64 TTgAAGAAAATTC Totally 2 motifs of 2 different REs have been found Description of REs found 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1464. Group TF: WRAF1; WRAF2 /AC: RSP01644//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np5-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT5G19960 |PROD: the same as GENE |6743928..6746341 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.33 C - 0.13 1 aaaccaattg gggaagacga gattttaatt tggagaattg attttgttat 51 ggtcaatatc gagttaaact aattactatt cactaatgat actttttgca 101 taaaatcgtt ttgaTCAATa aagaagaaca tttttaacag aaaaactaga 151 aaagtaattc gaaaaagtcc TATAAAAAag gtattttccg gtttcgtttt 201 AGTGGGCCTA ATGGCCCATA TGTAACACGA AGATTTCTGA CAGTACGACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01068 Mean Expected Number 0.008 +strand +36 : +44 TCTGACAGT Totally 1 motifs of 1 different REs have been found Description of REs found 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G20160 |PROD: the same as GENE |complement(6803838..6805197) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.24 C - 0.20 1 aaaagaacaa aggtgaagtc atggttaccc ttttgggctt taatcaaaat 51 ttcgccgaca aaagaagaaa ctaaaaaacc aaactcccaa agtcaaaact 101 agttctgtcg gttaaggtta gttcacatgg gccgaagtat atcatcaccc 151 aggcccatta aaaagatgTA TAAAATcgac aagcatataa gtaacagcgt 201 AAGCCTAAGT TATCATTCAG AATATTCAAG CTGAGAAAGT CGTAGCCTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.005 -strand -166 : -172 CAAAAGG AC RSP00270 Mean Expected Number 0.001 +strand -175 : -165 TACcCTTTTGG AC RSP00331 Mean Expected Number 0.007 -strand -173 : -181 GTAACCATG AC RSP00808 Mean Expected Number 0.009 +strand -84 : -78 GTTAGTT AC RSP00857 Mean Expected Number 0.004 -strand -71 : -80 CCATgTGAAC AC RSP01214 Mean Expected Number 0.001 +strand -173 : -164 CCCTTTTGGG AC RSP01621 Mean Expected Number 0.003 +strand -175 : -166 TACcCTTTTG Totally 7 motifs of 7 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC: RSP00810 RSP00812 RSP00813 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BETAG4 |LOCUS: AT5G20330 |PROD: beta-1,3-glucanase (BG4) |6871563..6873114 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.27 C - 0.14 1 gaaagaaaat aaataaatgt aactagttaa aaaggaaata accaaatttg 51 taaatagatc gacggctaag atcacaccat gaaccaaaaa taaaggtatt 101 ttactatttt ATTGAtacca ataagactga aaatagaaat cagatgtatc 151 tacagtaTAT AAATAgatcc tacagtttgc aaggaaacac acaacaacaa 201 AAAAAAACAA ATTTGGTTCC TTTTTCTTCT TCAGACGAGT AATATCTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00525 Mean Expected Number 0.009 -strand -54 : -60 ACATCTG AC RSP00837 Mean Expected Number 0.002 +strand -145 : -136 AGATCGACGG AC RSP00838 Mean Expected Number 0.005 -strand -136 : -141 CCGTCG AC RSP01678 Mean Expected Number 0.005 -strand -87 : -98 CAATAAAATAgT Totally 4 motifs of 4 different REs have been found Description of REs found 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G20670 |PROD: the same as GENE |complement(6993116..6993875) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.08 T - 0.27 C - 0.22 1 cccacatgca taatttcaag aaacaaacaa aaggtttctc gccacattat 51 ctcactcaca tgaagccaaa tcctcctcca acctcacatt atttaacata 101 caaataataa taattttctc aaaaaaaaaa aaaaaaaaca gagacatatg 151 tctccatgta tgatcTATAT ATAcatccaa taaaaaccac ctgtatctgt 201 ATATGATATA ACCTTAAAGC CAGAGACTCG TAACAGAAAA TTTTATTAGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01470 Mean Expected Number 0.008 -strand -188 : -197 TtATGCATGT AC RSP01640 Mean Expected Number 0.004 -strand -52 : -61 aTATGTCTCT AC RSP01642 Mean Expected Number 0.005 +strand -55 : -46 AtATGTCTCC Totally 3 motifs of 3 different REs have been found Description of REs found 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G22330 |PROD: the same as GENE |complement(7390799..7394197) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.39 C - 0.15 1 tataatttca ccccttaatt tacatttatg actattgagt cctgtctttt 51 tgtttcgccc ttttctctaa ttgttttcgt tttctttcta tttctgagtt 101 taggaagtgt ggggtgattt tgtaaataaa ggataatata aaggcccatt 151 gttgcaacaa catgtttaac aTATAAACTt tgttaggaag aggttttggc 201 AATTTGGAGT CAGAGGGAGG CGTTGCAAAC TCAATAAAGC TCAAAACTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.008 +strand -84 : -73 ATTTTGTAAaTA AC RSP00860 Mean Expected Number 0.008 -strand -112 : -120 AGAAAGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: remorin family protein, contains Pfam domain |LOCUS: AT5G23750 |PROD: the same as GENE |complement(8009812..8011622) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +166 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.30 C - 0.14 1 cgatagctac atgttacata ttaatttaag ttgacaaaaa atatgacaat 51 tagtggttga attgtaaata tatataacat gtagtttttt tataaattat 101 ctaaagatta atggtcattg aatcATTGAt cgtgcatcaa agatactaca 151 aaaagaagaa aatcaaataT ATAAAGAaag aaggcgagtc attttatgac 201 AACGAGAAAC AGAACATCAC TACCAAACAT CTCCAGCTCA GTTTCTTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00454 Mean Expected Number 0.002 -strand -181 : -191 TAtGTAACATG AC RSP00778 Mean Expected Number 0.004 -strand -76 : -85 TGATTCAATG AC RSP00871 Mean Expected Number 0.003 +strand -18 : -9 GGcGAGTCAT Totally 3 motifs of 3 different REs have been found Description of REs found 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G24420 |PROD: the same as GENE |complement(8336617..8337971) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.30 C - 0.23 1 ttatacacta ctatactaaa cttaagtata aaatctaaat tgtactgtat 51 aaattattta aagattaaaa aaatccaagt agatgaacat aaaacacgtg 101 cctctcctaa gtcctcctaa ctaATTGGta ttaagtcaca agcctccttt 151 atccactcgg tctccttcac TATAAAAAgc aaagaaatcc caaaacactt 201 GTAGCACCAC AACAACAATA TCCACATTCT TCTTCTTTTG AGTATTACAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00280 Mean Expected Number 0.005 +strand -127 : -118 TCCAaGTAGA AC RSP00447 Mean Expected Number 0.007 +strand -23 : -14 AGCAAAGaAA AC RSP00524 Mean Expected Number 0.004 +strand -107 : -101 ACACGTG AC RSP00631 Mean Expected Number 0.003 -strand +26 : +14 TGTGGaTATTGTT AC RSP00966 Mean Expected Number 0.001 -strand -99 : -108 GGCACGTGtT AC RSP01152 Mean Expected Number 0.001 +strand -108 : -99 aACACGTGCC Totally 6 motifs of 6 different REs have been found Description of REs found 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G24610 |PROD: the same as GENE |8428081..8429255 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +499 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.34 C - 0.22 1 tcaaaattta attaagtgca tacaatacat gtcctcaaaa aatgaattaa 51 caatgaatat aaaagagaaa aaaaatcact ggtgggaccc gtttagtggg 101 accgttaatt aacggagtta ggatcatatt atccgttaga agacagtgtt 151 agttctctct ctctaatcTA TAAATAtctt cttcatcttc ttcttccccc 201 ACTCTGCTCT TCTTCCTCTT GTTGCTATCG TCTCTCTCTC TCGGGTCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.007 +strand -142 : -133 AtAAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -37 : -45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -39 : -47 AGAGAGAGA AC RSP00985 Mean Expected Number 0.006 +strand -85 : -76 AGTTAGGaTC AC RSP01167 Mean Expected Number 0.006 +strand -30 : -22 TAAATATCT AC RSP01296 Mean Expected Number 0.005 +strand -33 : -25 CTATAAATA AC RSP01401 Mean Expected Number 0.001 +strand -59 : -49 GACAGTGTTAg Totally 9 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G24660 |PROD: the same as GENE |complement(8443282..8443837) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.50 G - 0.14 T - 0.18 C - 0.18 1 ttccaaaata ttaattggac ccaacgtgta tatcgaaaat aatttaaaag 51 agaaaatgtt ctagaatcta gaggaagaaa ataactcacc agaaataaga 101 aagaagaaga agagatatag atacATTGAa cctagacata aaacccaccc 151 aaaccccagt ctcaaagacg ccTATTAATA aggaacgttc aagaaccaaa 201 ACAAAACACA AAAAAACTCA AAGTGACCAA AATAACCAAA AGGAGAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00871 Mean Expected Number 0.006 -strand -111 : -120 GGTGAGTtAT Totally 1 motifs of 1 different REs have been found Description of REs found 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: plastocyanin-like domain-containing protein |LOCUS: AT5G25090 |PROD: the same as GENE |complement(8647059..8647820) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.28 C - 0.23 1 ctgtctctga ccgttattaa gaaaatgaaa ttactgtata tctaatttct 51 tggaacctga gtctcaatgg taaggacttg acacgtttaa aataacaacc 101 gttgggacca acagagagta gctgcaaaac aacattcact tccaacggct 151 agtttctctt cttcccctaT ATAAAGAccc aatcaatcac aaaagagccc 201 AAATAAGCAA CATAAAATCT TTCTCTTTAT CTCTATATAG CTCATACACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.002 -strand -112 : -121 TAAACGTGTC AC RSP01035 Mean Expected Number 0.008 -strand -115 : -121 ACGTGTC Totally 2 motifs of 2 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: C-5 cytosine-specific DNA methylase family protein |LOCUS: AT5G25480 |PROD: the same as GENE |complement(8869876..8872265) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.30 C - 0.14 1 tggttaagga ttgtttttta ttttttgtaa gttgagggtt attttgaaac 51 atattggcta gtttgagggt tttcttgcta attaataaag aaaaacgaca 101 aaaaacaaaa aacatggttc taACAATaaa ccgaacaagc gtggtatggt 151 tctattacta aacagaacaa TATAAAAAaa cggtttaatt tacccaaacg 201 AATAAGAACA ATAACCAAAA ACTCCCAAAT TAATTTTGCT TAAGCAGCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.004 +strand -26 : -15 AAAAAACGGTTt AC RSP00631 Mean Expected Number 0.001 -strand +19 : +7 TtTGGTTATTGTT AC RSP01233 Mean Expected Number 0.006 -strand -122 : -128 AGCAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G25570 |PROD: the same as GENE |8901744..8903219 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.38 C - 0.17 1 ttcactagtc tatatgtttc cttggtgttg tttgatggtc tggttagttt 51 ccattgtgat tcatctcctt tgtaattctg cggctttatt gaaaagtttc 101 gtttaatctg ttaaaaaccc taaaaaattt gaacttgtat gaataaaaaa 151 ttttagctgc tcgcataTAT TAATAggttt agagactctt attaaaggcc 201 AAAAGCACAC GTCTCAAAAA TATATCCGTT TCCTCGCTTA GATACGAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.001 +strand +6 : +13 CACACGTC AC RSP00279 Mean Expected Number 0.001 -strand -78 : -86 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -86 : -78 AAACCCTAA AC RSP00501 Mean Expected Number 0.004 -strand -38 : -44 CGAGCAG AC RSP00891 Mean Expected Number 0.008 +strand +17 : +25 AAAATATAT AC RSP01303 Mean Expected Number 0.003 +strand -87 : -78 aAAACCCTAA AC RSP01687 Mean Expected Number 0.010 +strand -120 : -114 CGGCTTT Totally 7 motifs of 7 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G25840 |PROD: the same as GENE |complement(9010727..9011501) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.30 C - 0.17 1 ccttttattg gctttaccgt gttgttcaag atatacatgt gaagttgatc 51 cttttttagg tcattaaatt aaagctaaat tgttcatgct tttattggca 101 ggacaaaaaa caaaagtaaa taaagaagca gaaccctcga gactattctc 151 ttaagtctta aacacTATAA ATGcgcatca taacaatcta gtagctagtc 201 ATAGATACAA GTGATTGCTA TACATATAAC AAACACAAGA AAACACCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.002 +strand -151 : -142 CCTTTTTTAG AC RSP01205 Mean Expected Number 0.005 +strand -151 : -142 CCTTTTTTAG AC RSP01209 Mean Expected Number 0.003 +strand -199 : -190 CTTTTATTGG AC RSP01209 Mean Expected Number 0.003 +strand -150 : -141 CTTTTTTAGG AC RSP01209 Mean Expected Number 0.003 +strand -112 : -103 CTTTTATTGG AC RSP01469 Mean Expected Number 0.010 -strand -159 : -168 TCACATGTaT Totally 6 motifs of 4 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: IAA28 |LOCUS: AT5G25890 |PROD: |9033418..9034808 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.30 C - 0.20 1 tagtaatcgt tgtaaataat atatgtgtgt ctcccatcaa tccgcatcac 51 attcgtagaa tcatacacgt atgtaaacgc atttttgaca tacggaaacc 101 atacaagtag gatctgttag gtggttatta attcaaaata aaatctcttt 151 tcattagaaa aTATAAAGAg actactttta taaaaagatt gggattgtag 201 TTCCTTGCCA ACCACCCATA TAATAATACT CCCCAACACC AAAAACACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01006 Mean Expected Number 0.010 +strand +11 : +17 ACCACCC AC RSP01008 Mean Expected Number 0.006 -strand -79 : -85 ACCTAAC AC RSP01221 Mean Expected Number 0.001 -strand -74 : -81 TAACCACC AC RSP01288 Mean Expected Number 0.006 -strand -129 : -136 ATACGTGT AC RSP01755 Mean Expected Number 0.004 +strand +9 : +16 CAACCACC Totally 5 motifs of 5 different REs have been found Description of REs found 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: mitochondrial substrate carrier family protein |LOCUS: AT5G26200 |PROD: the same as GENE |9157145..9158780 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.32 C - 0.28 1 accttaaaaa ctgtgagttt ctctaacata aaccaaccaa cacttgccac 51 gtgcccagtc ccattactcc tcctcacaca cctcttgagt ccgttaaagg 101 ccgctccttt tatgttatcc acacgaccca tcgttttggc tctgactcta 151 tattcactat aataaTATTA ATAcacgagt tcatagattt tgaagctaat 201 AAATCCACAG AGATTTTCTC TCTTTGATCA CAATTCAATC ATACACTCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -155 : -146 GCCACGTGcC AC RSP00073 Mean Expected Number 0.001 -strand -146 : -155 GgCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -154 : -145 CCACGTGcCC AC RSP00175 Mean Expected Number 0.001 -strand -148 : -155 CACGTGGC AC RSP00183 Mean Expected Number 0.000 +strand -155 : -146 GCCACGTGCC AC RSP00204 Mean Expected Number 0.002 -strand -146 : -155 GgCACGTGGC AC RSP01034 Mean Expected Number 0.006 -strand -149 : -155 ACGTGGC Totally 7 motifs of 6 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 177. Group TF: G-box binding TF /AC: RSP00183//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 10 /TF: G-box binding TF 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G26280 |PROD: the same as GENE |9208715..9210575 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.29 C - 0.17 1 aacaaaaacg ataaaatgaa tgtgtaagat aatattgttt aaaaaagaaa 51 aaaagaacaa aaaaaagata atattgtttt cccgacgact aatccacttt 101 cagtatttta taaaataact gaactcaagt tgctcgatca aacaagtacc 151 cttaaatgtc tctctgtcta TATAAATGta cactcttccc aaacaaaacc 201 ATATCTCAAA ATATGAATAA TCAAAAATGG AGTATAGGTT TCATATCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.007 +strand -196 : -185 AAAaCGATAAAA AC RSP01003 Mean Expected Number 0.009 -strand -42 : -51 ACAtTTAAGG AC RSP01642 Mean Expected Number 0.004 +strand -47 : -38 AAATGTCTCt Totally 3 motifs of 3 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G27420 |PROD: the same as GENE |9684075..9685564 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.33 C - 0.26 1 tcttcgaagt catcgaacta ttttgatttg tatgactttt cacttccatc 51 tccaattgga aacttctgac cgtccacgtg gcattcaata agtaacacat 101 ttgcttatga catatcccct aacttcctcg cttcttctcc acgacttttt 151 caaacttttc aaaacctccc TATAAACTtc agatccttat tcctcacaat 201 ATTAAACCAA AAAAAAAAAC TAACTTTTTG GGACTCCAGA ACTAATAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -128 : -119 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -119 : -128 GCCACGTGGa AC RSP00115 Mean Expected Number 0.009 -strand -168 : -178 ATAcAAATCAA AC RSP00153 Mean Expected Number 0.001 +strand -127 : -118 CCACGTGGCa AC RSP00153 Mean Expected Number 0.000 -strand -120 : -129 CCACGTGGaC AC RSP00175 Mean Expected Number 0.000 +strand -126 : -119 CACGTGGC AC RSP00189 Mean Expected Number 0.003 +strand -128 : -119 TCCACGTgGC AC RSP00340 Mean Expected Number 0.005 +strand -128 : -119 TCCACGTGgC AC RSP00460 Mean Expected Number 0.004 -strand -85 : -94 GAtATGTCAT AC RSP00572 Mean Expected Number 0.007 -strand -86 : -93 ATATGTCA AC RSP00682 Mean Expected Number 0.001 -strand -119 : -128 GCCACGTGGA AC RSP00683 Mean Expected Number 0.005 -strand -119 : -128 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.000 +strand -127 : -120 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -120 : -127 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -128 : -119 TCCACGTGGC AC RSP00920 Mean Expected Number 0.003 -strand +28 : +17 AAAAGTTAGTTt AC RSP00938 Mean Expected Number 0.000 -strand -118 : -129 TGCCACGTGGAc AC RSP01034 Mean Expected Number 0.002 +strand -125 : -119 ACGTGGC AC RSP01593 Mean Expected Number 0.000 +strand -128 : -117 TcCACGTGGCAT Totally 19 motifs of 16 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: F-box family protein |LOCUS: AT5G27750 |PROD: the same as GENE |9828241..9830165 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +193 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.32 C - 0.14 1 acttcaaaaa tattgagtag atagataata tttgtttttt attttgcaaa 51 aaaaaaagat aatatatttt taagaattgc gttttcgaaa ttgcgtttaa 101 gaacgaataa tggcagccat tttgatttcg aaacgcaaAT TGGaatagga 151 accgcttcga gtactgcTAT AAATActaaa tgaagggttt gagttaaaat 201 GATCGATACT AGCTTTACCA CTTAGCCTCT GACGCCAGAA CTCCGGTCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.003 -strand +3 : -9 ATCATTTTaACT AC RSP01296 Mean Expected Number 0.007 +strand -34 : -26 CTATAAATA AC RSP01301 Mean Expected Number 0.001 +strand -34 : -25 CTATAAATAC AC RSP01633 Mean Expected Number 0.001 -strand -100 : -110 CTTAAACGCAA Totally 4 motifs of 4 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: eukaryotic translation initiation factor 1A |LOCUS: AT5G35680 |PROD: the same as GENE |complement(13875151..13876240) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +421 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.27 C - 0.16 1 taataagttt gtgctgaatc gtttcatatc acttatataa acaagtttcg 51 tcaagattgg ctcgtttgaa ccgtaaataa tatatgttga caaaaaaata 101 aaataaaaaa tggcatgact ccgtaataaa acctaatttc gagggtgttt 151 tacaaatagc tacactaTTT AAATAaaaag acgtctcttg cgacatcgat 201 AAAAAAAAGT AGAACAAGCA ACACAACGCA GCTAAGAAAC CTCCTTAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00031 Mean Expected Number 0.000 +strand -105 : -86 AaATAAAATAAAAAAtGGCA AC RSP01104 Mean Expected Number 0.003 +strand +37 : +44 AAACCTCC Totally 2 motifs of 2 different REs have been found Description of REs found 30. Group RE: "-314" /AC: RSP00031//OS: Zea mays /GENE: SBEI/RE: "-314" /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT5G37690 |PROD: the same as GENE |complement(14990583..14993399) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.30 C - 0.16 1 tttctctaga aaatttcatt tttccagaac aatcaaaaga tatatgtaaa 51 catctaaaga tttattagat aagaaaataa ccacctaatt tttatatgaa 101 tagaaacttg ctgtaatggt cataaccagt agaACAATaa ataattacaa 151 atgagttcat catcacTATA TATAttcaac attcgcttac ataacattct 201 GTCCAAATTA GAGAATAAGT AACTCAAGAA GGAGTGAAAT CAACACAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01221 Mean Expected Number 0.004 +strand -123 : -116 TAACCACC Totally 1 motifs of 1 different REs have been found Description of REs found 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G37730 |PROD: the same as GENE |complement(15003263..15004147) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.34 C - 0.16 1 aaaactaaaa ttcgtagcct tgatagaaaa tctctctaac ctattgtgtc 51 gagacttata tatgcatgta agcatatata ttatagggtt attctcatat 101 agtcTCAATg gatggaactc ctaacactta cctttcatgt tgtcttctct 151 tcctttaatt tatgcatcTA TAAAACggaa gcagtaagca agtaagtttc 201 ATTCTTCTTT AATGGTCTAT ACAAAGAAAA AGGATGAATA GAAATGAGAA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ACYB-1 |LOCUS: AT5G38630 |PROD: cytochrome B561 family protein |15483222..15485415 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.30 C - 0.16 1 aataaaaatc tatgggtgtg tgtcattgta attctctcaa aataaaaata 51 aaaataggca aagtagacat aaacaaaaga tctttactct aatcagtttt 101 gtgagtgaca caaagctcca tttttttacc cttaaatcaa attactaata 151 ataattaaaa aatctTATAA AAAtaatatt tctggcaaat cactctggtt 201 GACCTCAAAC TCAAAGTCGA GTAATTGCCG ATCTAAAACA CAGGGGGTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.008 -strand -183 : -188 CACCCA AC RSP00872 Mean Expected Number 0.005 +strand -184 : -175 TGTGTGtCAT AC RSP01105 Mean Expected Number 0.005 -strand +47 : +42 CCCCCT Totally 3 motifs of 3 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G38760 |PROD: the same as GENE |15541408..15542207 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.30 C - 0.22 1 agtcaatcga gctaaaaata tccaacaaat gtgtcaaact tccatataac 51 tctgatctca tgaactaaat atggattaat catcctaatc tccacttaat 101 ccggaacacc ccatattcca acactttact gacatgtgtc agaagatgaa 151 agctccatga gagctaTATA AATTatggaa cctttggagg aacttaactc 201 AATTCAATCT CATAATCACA CTTTTATTCA AAGAAAATAC TTAACTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00934 Mean Expected Number 0.004 -strand -129 : -138 ATATTTAGTT AC RSP01202 Mean Expected Number 0.001 -strand -14 : -21 CCAAAGGT AC RSP01469 Mean Expected Number 0.006 +strand -71 : -62 TgACATGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G39650 |PROD: the same as GENE |15892427..15893344 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.24 C - 0.23 1 taagaaacac atggcttggg ccaattcatg gacttcaagc ccatttacac 51 taatttcatt tgttccacgt ggcttgttat cagagagagc aagaattcta 101 aaacctttcc cacataaacc gtcgtccgat gaaactctat aaccgTCAAT 151 aaccgccgcg atttgaaaAA TAAATAcaaa aatctcattc tccattaaac 201 CATTTAACAC AACATACGAA AAACTGGTAA ATCACAAAAG AAAAAAACAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -137 : -128 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -128 : -137 GCCACGTGGa AC RSP00142 Mean Expected Number 0.002 +strand -47 : -41 CGCCGCG AC RSP00153 Mean Expected Number 0.001 +strand -136 : -127 CCACGTGGCt AC RSP00175 Mean Expected Number 0.001 +strand -135 : -128 CACGTGGC AC RSP00189 Mean Expected Number 0.002 +strand -137 : -128 TCCACGTgGC AC RSP00340 Mean Expected Number 0.003 +strand -137 : -128 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 -strand -128 : -137 GCCACGTGGA AC RSP00683 Mean Expected Number 0.003 -strand -128 : -137 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -136 : -129 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -129 : -136 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -137 : -128 TCCACGTGGC AC RSP00938 Mean Expected Number 0.000 -strand -127 : -138 aGCCACGTGGAA AC RSP01015 Mean Expected Number 0.003 -strand -139 : -148 CAAATGAAAt AC RSP01034 Mean Expected Number 0.003 +strand -134 : -128 ACGTGGC AC RSP01734 Mean Expected Number 0.009 +strand -137 : -131 TCCACGT Totally 16 motifs of 14 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nodulin MtN3 family protein |LOCUS: AT5G40260 |PROD: the same as GENE |16106985..16108981 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.35 C - 0.21 1 aaaataacaa aaataataat aaaagagaat cataagttga taacaaaaaa 51 gtattacgaa ataattaata cattatgata attccccaag tttaggagaa 101 tATTGActcc ttgactcaaa cgtctctctt atcttaatct ctaaaatctc 151 tcttatctct ctctctcTAT ATATAcacac acataatacc caaacgctct 201 CAATTAGGTT TTCTTCTACA CTTGTTCTTC TTCATTTGCT CTCTTCTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.008 -strand -66 : -74 AAGATAAGA AC RSP00445 Mean Expected Number 0.008 +strand -182 : -173 AtAAAAGAGA AC RSP00710 Mean Expected Number 0.003 -strand -134 : -146 TAATTATTTCgTA AC RSP00864 Mean Expected Number 0.003 -strand -33 : -41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -35 : -43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -37 : -45 AGAGAGAGA AC RSP01013 Mean Expected Number 0.009 -strand +38 : +29 CAAATGaAGA AC RSP01014 Mean Expected Number 0.001 -strand +38 : +29 CAAATGAAGA AC RSP01237 Mean Expected Number 0.003 +strand -36 : -27 CTCTATATAT AC RSP01312 Mean Expected Number 0.000 -strand -134 : -148 TAATTATTTCGTAAT Totally 10 motifs of 8 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1205. Group RE: Regulatory Motif 2 /AC: RSP01312//OS: Glycine max /GENE: 11S A2B1a/RE: Regulatory Motif 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AGP24 |LOCUS: AT5G40730 |PROD: arabinogalactan-protein (AGP24) |16318303..16318748 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.46 G - 0.06 T - 0.30 C - 0.18 1 atcacatata atctttaaca gctgtcttga tcaatgcatc aaaagccggg 51 gccaattcaa caaaaaaaat agaaacaaat cttattttta gtcctaaatt 101 aaaataaaat cttattttaa gatatTCAAT aaatttcaat atattataaa 151 taaaaagttt tctctcctaT ATAAACAaat ctcacaaacc tatttacaca 201 ACAAACAACA CAAATCTTTT TCTCATTCAT CAAAAGAAAA AACCAAAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.008 +strand +42 : +51 AcCAAAGCAA AC RSP00481 Mean Expected Number 0.003 -strand -150 : -153 CCCC AC RSP00653 Mean Expected Number 0.001 +strand -43 : -33 TTtTCTCTCCT AC RSP01687 Mean Expected Number 0.003 -strand -153 : -159 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 459. Group RE: GC-1 /AC: RSP00481//OS: Zea mays /GENE: Adh1/RE: GC-1 /TF: unknown ||Identical REs AC: RSP00715 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G41400 |PROD: the same as GENE |complement(16586605..16587405) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.40 C - 0.19 1 ttagattaaa cttactgcag agtaagtttg gtgtgaaggt taacgaaagt 51 caagtaacca agtgatacac acgggttttg cattatttgt atttatatta 101 ttaaaaagca taataatatt tactaattaa ttatgtaagt atgtacatat 151 tcatatatca ctgagTATAT ATAtcctact catctctgcc tttttctctc 201 GTTCCCAACT CCTTACGCGC TCTCTCTCTA TCTCTTTAGC TTTCTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.006 -strand +51 : +43 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +29 : +21 AGAGAGAGA AC RSP01559 Mean Expected Number 0.008 +strand +15 : +20 ACGCGC Totally 3 motifs of 3 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: amino acid transporter family protein |LOCUS: AT5G41800 |PROD: the same as GENE |16751059..16753219 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +11 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.30 C - 0.28 1 ccgaataaag aggaaaatgc aaaatatgtc tccttttctc actatgacag 51 gttgtttctt taaagaagca acggaattta acattatagc aaacattaac 101 tatcaccagc tatcatgcgc ccacctctcc accgtgctct ccatcatcat 151 cattccataT ATAAATCatt cacttgtaga atcttcttct ctttcacact 201 AAAATTCATC GATGACGGAT CCTCCCAGAC CCGACCCGTT TCCTGTTACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.003 +strand -156 : -149 TGACAGGT AC RSP00660 Mean Expected Number 0.008 +strand -26 : -20 TGTAGAA AC RSP01017 Mean Expected Number 0.006 -strand -142 : -149 AGAAACAA AC RSP01031 Mean Expected Number 0.006 +strand -23 : -16 AGAATCTT AC RSP01642 Mean Expected Number 0.007 +strand -177 : -168 AtATGTCTCC Totally 5 motifs of 5 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 632. Group RE: -300 box /AC: RSP00660//OS: Oryza sativa /GENE: Gt3/RE: -300 box /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: calmodulin-related protein, putative |LOCUS: AT5G42380 |PROD: the same as GENE |complement(16959804..16960594) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.26 C - 0.29 1 gtcaacttga cctttcccca caaacactca ttgcggagga aacttcccgg 51 ccaccgccgc gcaaccgcct ctagctttaa ataataacac caaaatattc 101 aaacccgtgt tttaaccgtc gaACAATcaa gaatctctcc accattacac 151 gcattcacat actcatcTAT ATATAatcta ccacttcttg aaaagaattt 201 GCATCAGAAA TCCATTTCCC AAATCTTCTA GATTCATATT CAAATCAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.002 +strand -146 : -140 CGCCGCG AC RSP00613 Mean Expected Number 0.009 +strand -75 : -68 ATCAAGAA AC RSP00613 Mean Expected Number 0.009 +strand +44 : +51 ATCAAGAA AC RSP01237 Mean Expected Number 0.009 +strand -36 : -27 aTCTATATAT Totally 4 motifs of 3 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: COP8 |LOCUS: AT5G42970 |PROD: |complement(17254413..17257961) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.32 C - 0.14 1 atgaactaac aaaaaaaaat atagtattta tgcttaatat atatatatat 51 atattttaat ttattttggg tactaatctc atatgagttg tgaccatatt 101 aagtaaattt tgtaaagcgc ctctccgatc accggcacag aatctagtcc 151 ccgtttattt ttttaaTATA AAAAgagagc aaactccaaa aaaaaaaaaa 201 AAAAAAGCGA GAGAGAAATC AAAACCTTGT AAGGTTTCTT AGGGTTTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +39 : +47 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +47 : +39 AAACCCTAA AC RSP00405 Mean Expected Number 0.005 -strand -11 : -18 TTTGGAGT AC RSP01303 Mean Expected Number 0.002 -strand +48 : +39 gAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: acid phosphatase class B family protein |LOCUS: AT5G44020 |PROD: the same as GENE |17729638..17731563 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +22 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.33 C - 0.20 1 atttaaggtg atttgttaat taacaatatc aaaaaaatct tcctaaaaaa 51 aattaaccca tacatgtgat gctatagtta gtagtactag aactaaaccc 101 atccagtagt aaatctaata aacttcattt ttttttgtat tttgttgact 151 tgcacttcga catactctaT ATAAACAcaa ccatattaga gatcagatcc 201 CAACACCACT AATAAACTCA ACATGGCTAG ATCCTTGTTG CTCTCGCTAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.005 -strand -22 : -33 TGTGtTTATATA AC RSP01469 Mean Expected Number 0.008 -strand -132 : -141 TCACATGTaT Totally 2 motifs of 2 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: integral membrane family protein |LOCUS: AT5G44550 |PROD: the same as GENE |complement(17959102..17960435) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.09 T - 0.23 C - 0.23 1 gtcccaagag caagttaact tgccacaaaa cattttaaaa aaaaaaaaaa 51 aaggttcaaa tctaacgttt tcactgaatc ttcacaacca ccaaaaccta 101 aaattaaccc tccaaaagtt agatggtcag acaaaagaCC AATcactaac 151 actcaaatac tcaatataTA TAAAGAcaca aacactctac acattgcaaa 201 ACAAAAACAA TTTGACCATT TTCATCTTCA AACAATGGCG GTTTCAAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.006 -strand +17 : +11 GGTCAAA AC RSP00741 Mean Expected Number 0.005 +strand -152 : -141 AAAAGGTTcAAA AC RSP01237 Mean Expected Number 0.010 -strand -26 : -35 CTTTATATAT AC RSP01600 Mean Expected Number 0.006 +strand +42 : +49 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: methyladenine glycosylase family protein |LOCUS: AT5G44680 |PROD: the same as GENE |complement(18041442..18043172) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.07 T - 0.28 C - 0.24 1 tccaaacctt aattaattaa aaaccctaat taaaacctat aaaacttcat 51 taaacacaat ccaagactct tgtatcaaaa accttaatta gtgtgcatgt 101 aataaatata agttgcccac tagcaccaat tactaccccA CAATacatca 151 tcctcttttc ccacaTATAA AAAccctttg agagatctca actttgtttc 201 ATCTCATTTA TCATCATCCT TCAAGAACAC AAAGCTAGAC AGAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.001 -strand -102 : -108 CATGCAC AC RSP00171 Mean Expected Number 0.005 +strand -21 : -16 GAGAGA AC RSP00327 Mean Expected Number 0.009 -strand -102 : -107 CATGCA AC RSP01326 Mean Expected Number 0.004 -strand -18 : -24 TCTCAAA AC RSP01597 Mean Expected Number 0.001 -strand -81 : -91 GTGGGCAaCTT Totally 5 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 313. Group RE: RY /Group TF: ABI3 /AC: RSP00327//OS: Brassica napus /GENE: napA/RE: RY /TF: ABI3 ||Identical REs AC: RSP01650 1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC: RSP01326 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: proline-rich family protein |LOCUS: AT5G45350 |PROD: the same as GENE |complement(18399064..18400926) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +845 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.35 C - 0.15 1 caatctataa gcaaaacatt ggtagtgtta catgtgtcgt ccttcgtgct 51 gaaaatttgg atagcattgt taattatgac aacgtaagtg tagcctgtga 101 ttcatagtaa aatataagga ctaaaaataa aaatatatct tttttggaaa 151 tcgtaccgcg taagaaacat gTATAAATAc ctataaggtc ttattttttt 201 CTCTTCCAAT TTCGTTTCGA CATATTTCGC GATTCGTCTA AGGTAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.007 -strand -64 : -75 tATATTTTTATT AC RSP01016 Mean Expected Number 0.010 +strand -38 : -31 AGAAACAT AC RSP01469 Mean Expected Number 0.008 +strand -173 : -164 TtACATGTGT AC RSP01733 Mean Expected Number 0.007 +strand -45 : -40 CCGCGT Totally 4 motifs of 4 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: mob1/phocein family protein |LOCUS: AT5G45550 |PROD: the same as GENE |18479444..18482248 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.33 C - 0.17 1 gtgtgtagtc aagtcacttg aattttccag ctaataattg attatttaag 51 aaacttaagg taaaatacca aacattctga aagttaaggg gttttttaaa 101 aatatgacag ctaataagaa gagagagtta gagagaaaga gaatcaacga 151 gtctttcgtc ttcatcaTAT AAATActctc tcactttttc ccgtctttca 201 GAGACTCTCT TTCTCATTTC CACCTGAGGA AAAAAGCTTT TTCGAATCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.005 +strand -96 : -89 TGACAGCT AC RSP00861 Mean Expected Number 0.002 +strand -67 : -59 AGAAAGAGA AC RSP00861 Mean Expected Number 0.001 -strand +14 : +6 AGAAAGAGA AC RSP00894 Mean Expected Number 0.009 -strand -177 : -184 AATTCAAG AC RSP00953 Mean Expected Number 0.006 -strand -161 : -169 CAATTATTA AC RSP01030 Mean Expected Number 0.010 +strand -152 : -145 AGAAACTT AC RSP01499 Mean Expected Number 0.003 +strand -14 : -5 TTtCCCGTCT Totally 7 motifs of 6 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT5G45670 |PROD: the same as GENE |18545728..18547677 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.06 T - 0.36 C - 0.23 1 caccatcttt agttatatgt ctctgatgga tcaattcata gttccaccaa 51 aaatactcaa ttatttcaca tatataaaca cacatcacat ttacttttac 101 atttaacatc caaacatcAT TGCcgcgtga acatttaatg cttcttcaac 151 cgttaaaaaa cttTATAAAA Taacagtttc tcattctctc catattcttc 201 AAAACTATAT TATATAAACA CATTTTTCGT TTCTTCACAT TCACAAAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.007 -strand +22 : +11 TGTGtTTATATA AC RSP00038 Mean Expected Number 0.007 -strand -119 : -130 TGTGtTTATATA AC RSP00483 Mean Expected Number 0.009 +strand -79 : -75 GCCGC AC RSP01640 Mean Expected Number 0.005 +strand -186 : -177 aTATGTCTCT AC RSP01733 Mean Expected Number 0.003 +strand -78 : -73 CCGCGT Totally 5 motifs of 4 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G45880 |PROD: the same as GENE |complement(18626891..18628393) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.32 C - 0.14 1 agagagaaaa aagggtggtc aaaaaacaaa tttagaaatc aatgctataa 51 ttaagctatg ataaactaat cattttttta tcgaaacgta atgaaactaa 101 ttttaaattt taACAATcaa cgattttact tttttgtctc agtctaaaaa 151 taacaatcgg gtttctaaTA TAAAACaaac tcggtgctcc acgagaatag 201 TTGTCCTCTT CTCAAACATA TCTCAACTTA TTGTTTGAAT ATAAAAAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 -strand -67 : -78 AAAAAGTAAAAt AC RSP00163 Mean Expected Number 0.002 -strand -187 : -197 CCTTTTtTCTC AC RSP00595 Mean Expected Number 0.004 -strand -145 : -153 GCTTAATTA AC RSP01006 Mean Expected Number 0.001 -strand -182 : -188 ACCACCC AC RSP01639 Mean Expected Number 0.007 +strand -2 : +8 AGTTGTCCTC Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CUL4 |LOCUS: AT5G46210 |PROD: cullin, putative |complement(18748645..18754037) |SUPPORT | 17 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.41 C - 0.11 1 attttttatt tttttgtttt tcacttttgt gattagtaac cattaaaaca 51 acgcacatct aatcattgcg gtatatgtct atttttatca ataatatttt 101 ttttatcata tagtaattat gatttatgaa tgtataaata aaataattct 151 gattttattc agagtaTATA AATAaacaaa aaatcttcat ttctcgggtc 201 GGGTCTAAAT CGCGAGTTTT CGCGTAGGTT TGAGCAAAAA AAAAAAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand +41 : +50 AAAAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G46230 |PROD: the same as GENE |complement(18759667..18760272) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.28 C - 0.28 1 aatgtatttt atattcaatc aacgaataaa ataaattatt ccacgaacat 51 gaactgcatg cgtcccacct cattttatac gaaatttcca tgttaccctc 101 tctaatacta ttctccttcc tcttccacag acccaatttc gtcatTCAAT 151 tccaaaactc acacctctaT ATAAATCcag caaaaagtcc ccaaaaagtc 201 ACCACCACAA ATCTCATCGA AATGTCGTCT CAAGAAACGA AATCAGATCA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G46295 |PROD: the same as GENE |complement(18797023..18797429) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.27 C - 0.20 1 atatataaaa acaaatctat tatctatata aaggagttaa aaaatatatc 51 cacgaaattc tttggagaaa cagagtgctc ccacgtcaga acacctacgt 101 tgatatcatg gaaacgcgct tcgaatctat gactgtgaaa actaccaaaa 151 taccctcaac tttagcttgT ATAAAAAata aactcttcga agactttatt 201 ATAACAACAA CACCTGAAAC AAAAACAGAA CCCTAATTCT TTGTTACATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.009 +strand -123 : -117 CTCCCAC AC RSP00214 Mean Expected Number 0.002 -strand -113 : -120 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -120 : -113 CCACGTCA AC RSP00248 Mean Expected Number 0.001 +strand -121 : -112 cCCACGTCAG AC RSP00331 Mean Expected Number 0.005 -strand -86 : -94 GTTTCCATG AC RSP00530 Mean Expected Number 0.006 -strand -155 : -166 TaTTTTTTAACT AC RSP01127 Mean Expected Number 0.004 -strand -66 : -84 CAGT-- ** bp --AGCG AC RSP01304 Mean Expected Number 0.006 +strand +27 : +36 aGAACCCTAA AC RSP01656 Mean Expected Number 0.000 -strand -111 : -122 TCTGACGTGGgA Totally 9 motifs of 9 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT5G46690 |PROD: the same as GENE |18962842..18964864 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.35 C - 0.17 1 ctcacatgta cacacactca gagcaccata gcttcaacgt ttgtcaagaa 51 aaaaatttcc ttttaatcat tgccttttat tttttcgaaa atgtcgtttt 101 cgcccgcaaa tatttataac ctttatatat ttttttcgaa aACAATaaat 151 taaagatttg gaatgttgct aTATAAATCa atgatactta gtaattcaat 201 AAGGAATAAA CTTCGTGAAG AGAAATGACT CTAGAAGCTT TATCATCAAA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G46795 |PROD: the same as GENE |complement(19004215..19005424) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.33 C - 0.14 1 ttggagttaa tatttatatt tagactattt tgttaattta aattaaataa 51 cagattagcg tatgactctg tacaagtaga gagtgtcaac aggaaaaaaa 101 ggagggaact caactgcttt ttcctttatc gtcttacatt tttttactta 151 tctatataac tttttccact aTATAAACCa aaaaaataat atcacatgtt 201 AGAGAAATCC CAAAAAAATA ACAAGTCTTA TGGAGACGAT TGAGCAACAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G46890 |PROD: the same as GENE |complement(19053523..19054143) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.32 C - 0.22 1 catgcaacga tccaatatct tgacagtttg taagatcaac caattcatca 51 taatacataa tatttaaaaa ataatccctc acatgaacag tacattgaaa 101 ttttgtcatt tcgttgccac tcgtcgattt gtaattaaaa acacataaac 151 caatctcact cttcaccTAT AAAAAcccta tcactatctt catattcttc 201 ACACAACACA TCAAAAGCTT GATAAAGAGA GAGTTTTTAG GGTTTTCTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 +strand -85 : -76 GCCACTcGTC AC RSP00260 Mean Expected Number 0.003 +strand +36 : +42 TTTAGGG AC RSP00279 Mean Expected Number 0.000 +strand +37 : +45 TTAGGGTTT AC RSP00369 Mean Expected Number 0.000 -strand +45 : +37 AAACCCTAA AC RSP00377 Mean Expected Number 0.010 +strand -53 : -44 AACCAATCtC AC RSP00550 Mean Expected Number 0.010 -strand -49 : -59 TGGtTTATGTG AC RSP00996 Mean Expected Number 0.008 -strand -161 : -170 GTTGATCTTA AC RSP01303 Mean Expected Number 0.001 -strand +46 : +37 aAAACCCTAA AC RSP01598 Mean Expected Number 0.007 +strand -97 : -90 TGTCATTT Totally 9 motifs of 9 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G46940 |PROD: the same as GENE |complement(19075395..19076041) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.28 C - 0.18 1 gaaaagtaaa aaatagccaa aaaaaaacgt cagcgtataa gaaagagtgt 51 taaaacgaac aattaggcca ctcgacgtga gcggagtggt aaagcgtgac 101 atcagcctcc taaaagagcc gttttgttag ttacaaatca taaaccgtta 151 aattatttgt ttcgtttcat TATAAATTga tcaccaagtt actaaacttc 201 TTCATCATCG AGTCTCATTA ACCTTTGTTT CTTGCTTCCT CAAAGAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -200 : -189 gAAAAGTAAAAA AC RSP01017 Mean Expected Number 0.004 -strand +32 : +25 AGAAACAA AC RSP01233 Mean Expected Number 0.009 -strand +36 : +30 AGCAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATBI-1 |LOCUS: AT5G47120 |PROD: Bax inhibitor-1 putative / BI-1 putative |19153250..19155169 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.28 C - 0.22 1 cgcggcaaag tttcaactca ttacgacgac gacgatctca acgttcaaga 51 agtttccaga actacccttc tccgtgttta atgcccctac acgtgtagcg 101 aatgcgtaat aactacacat aagcagtaag ggtattATTG Tcaatttagt 151 ccccaatcat aaggcccatT ATAAATAacg aaagtcttta ttttctaact 201 AATATTTTCA TTAATCGATT CTCAAAGTCA AGCAAAAAAA ACGAAACAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.002 -strand -192 : -199 TTTGCCGC AC RSP00524 Mean Expected Number 0.009 +strand -112 : -106 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -105 : -111 ACACGTG AC RSP00707 Mean Expected Number 0.000 +strand -113 : -104 TACACGTGTA AC RSP00707 Mean Expected Number 0.000 -strand -104 : -113 TACACGTGTA AC RSP00727 Mean Expected Number 0.009 -strand +33 : +27 GCTTGAC AC RSP00974 Mean Expected Number 0.002 +strand -113 : -104 TACACGTGtA AC RSP00974 Mean Expected Number 0.001 -strand -104 : -113 TACACGTGtA AC RSP01256 Mean Expected Number 0.003 +strand -112 : -105 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -105 : -112 ACACGTGT AC RSP01435 Mean Expected Number 0.006 +strand -51 : -42 TCCCCAAtCA Totally 11 motifs of 7 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 673. Group TF: G-box binding TF /AC: RSP00707//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 2 /TF: G-box binding TF 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATERF-2/ATERF2/ERF2 |LOCUS: AT5G47220 |PROD: |complement(19189089..19190050) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.31 C - 0.21 1 cttcattgtg atatctgtgg ataaagcgca cgtgtttaat tcacgaacct 51 tcgtagtaac gaaaaatcca caactttcat attttttaat tacccactaa 101 actaaaacaa atttggaaaa acatgaaaaa ctttttcttt ttttccaggt 151 tcgtgaacct cgtaccctct aTATAAACCt cttaaccacc ttccacatag 201 AAAAAAGTTC AGATATTTGA TAAATCAATC AACAAAACAA AAAAAACTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -174 : -165 CGCACGTGTt AC RSP00093 Mean Expected Number 0.003 -strand -178 : -184 TATCCAC AC RSP00280 Mean Expected Number 0.005 +strand -9 : +1 TCCACaTAGA AC RSP00524 Mean Expected Number 0.004 -strand -166 : -172 ACACGTG AC RSP01221 Mean Expected Number 0.008 +strand -18 : -11 TAACCACC Totally 5 motifs of 5 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATSDAT/ATTDT |LOCUS: AT5G47560 |PROD: sodium/dicarboxylate cotransporter, putative |complement(19304595..19307691) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.35 C - 0.17 1 tttgtgattg aaaatacaat ttttttttac aggaaaaaaa cacaagttta 51 ctaaaaaggc cttcacatac taaaacatgt cacatgtgtc actcacggtc 101 ttacaccgaa tattttcgtc atatgaccac aaactttaat tattctataa 151 ataaccttaa TATAAACAca tttcgtatat ttatttttat gttttgccca 201 AACACATTAT AATAAAAGAA ATAAATAAAT TTATAAAAAG GCTCATTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00941 Mean Expected Number 0.006 -strand -188 : -195 TTTCAATC AC RSP01469 Mean Expected Number 0.005 +strand -121 : -112 TCACATGTGT AC RSP01594 Mean Expected Number 0.006 +strand -195 : -188 GATTGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S acidic ribosomal protein P1 (RPP1C) |LOCUS: AT5G47700 |PROD: the same as GENE |complement(19345029..19346209) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +259 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.31 C - 0.20 1 ttattttaat cccttaactt tcaaaatgtg ttcattttat ttaaaacata 51 aacattaaca tttgaaatac aagaattcgt tgaccacacc aaatagacat 101 gcCCAATaca tactcaaagc ccaataaatc tgaaaatgtc cagaagatct 151 ttaaatgggc ctaatgaaTA TATATAtttt gaaagcccta atgaagcttt 201 GATACAAAGC TTTCTTTATA AACGCTGCGT CACATCACTG AATCAAAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00131 Mean Expected Number 0.010 -strand -169 : -175 AACACAT AC RSP00535 Mean Expected Number 0.002 +strand -42 : -27 GCCT-- +6 bp --TATATA AC RSP01127 Mean Expected Number 0.004 -strand +40 : +22 CAGT-- ** bp --AGCG Totally 3 motifs of 3 different REs have been found Description of REs found 129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G48490 |PROD: the same as GENE |complement(19665061..19665507) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.47 G - 0.14 T - 0.23 C - 0.17 1 tccattttgt agtaaaagat ttgtgggctg gagattgtgg ataattgata 51 aataccaaaa aaaaacaaaa aagagcagca ataataagaa tccaagtgaC 101 CAATacccta tcccaaaagt gaagaaagaa aatccaatct agttcacggg 151 tttgctccaa aacttaatAA TAAATAcacc attgcatgca cattcatttt 201 AACACCACAA ACACAACAAA TATATAAAAA ATAAAGAGGA TAAAATGACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.008 +strand -16 : -10 CATGCAC AC RSP00093 Mean Expected Number 0.007 -strand -158 : -164 TATCCAC AC RSP00107 Mean Expected Number 0.004 -strand -13 : -19 CATGCAA AC RSP00270 Mean Expected Number 0.005 -strand -78 : -88 TtCACTTTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: bZIP family transcription factor |LOCUS: AT5G49450 |PROD: the same as GENE |20069055..20069961 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +316 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.07 T - 0.38 C - 0.17 1 aaaaataaaa taaaataaaa acaataaacc aaaaaagtaa aaaataaaaa 51 tgtttgacta aaattctctt tcttttccga ttcgtcattc gatgaatctt 101 cctttcttat ACAATttgga taatcttttc taatgtaaaa attcgagatt 151 tttttttata atgttaaatc TATAAATAag agcaacctaa aacgaacaac 201 TTCTCCCACT TTCCTTATTT TCGATCTTAT CCTTATCTTC TTCCTTGTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 +strand -169 : -158 AAAAAGTAAAAA AC RSP00122 Mean Expected Number 0.005 +strand +3 : +9 CTCCCAC AC RSP00861 Mean Expected Number 0.004 -strand -128 : -136 AGAAAGAGA AC RSP00862 Mean Expected Number 0.004 -strand -94 : -102 AGAAAGGAA AC RSP01748 Mean Expected Number 0.000 +strand -150 : -138 tGTTTGACTAAAA Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1555. Group TF: WRKY11 /AC: RSP01748//OS: Arabidopsis thaliana /GENE: AtWRKY11 (At4g31550)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: quinolinate synthetase A-related |LOCUS: AT5G50210 |PROD: the same as GENE |20459873..20463217 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.34 C - 0.09 1 aaagaattag aaaatattct ttttttgggg gtcaaatgta aaactttcta 51 atattctgta ggaccaatag aaaaagtaga aaatagaata tatgactttt 101 ttttttttga gtctaaaata gaatatagga ctttgaaaat cCCAATagcc 151 ataaaacatt aTATAAAAAa aagactgttg gaaatgatat tttcttgttt 201 AAAATAAAAT GATATTCATT GGCATAAAAG CTATTTTCAA AGCAAAGTGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00288 Mean Expected Number 0.008 -strand -135 : -140 TGGTCC AC RSP00683 Mean Expected Number 0.001 +strand +42 : +51 GCaAAGTGGA AC RSP01032 Mean Expected Number 0.004 -strand -173 : -182 CCAAAAAAAG AC RSP01093 Mean Expected Number 0.003 +strand +37 : +47 TCaAAGCAAAG AC RSP01209 Mean Expected Number 0.003 +strand -182 : -173 CTTTTTTTGG AC RSP01600 Mean Expected Number 0.010 +strand +35 : +42 TTTCAAAG AC RSP01600 Mean Expected Number 0.010 -strand -63 : -70 TTTCAAAG Totally 7 motifs of 6 different REs have been found Description of REs found 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nodulin MtN3 family protein |LOCUS: AT5G50790 |PROD: the same as GENE |complement(20673479..20675225) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.36 C - 0.24 1 gcaatggggc atgaagtata caactgtaaa gtaagagata atgctctttg 51 attctttttt ccccactata catcccattg agttcaaact cttctttctc 101 tctctctctc tctctaggtc tctcactcac agacgcattt tgcaagttga 151 tacacttttc ttcctcctaT ATAAATCact acacttctca atcaaaaatt 201 GTATCATACA TTGAACATAA TTCTCAGTAT GATCCTGTAG AGTTTACTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00394 Mean Expected Number 0.010 +strand -176 : -170 TGTAAAG AC RSP00495 Mean Expected Number 0.003 +strand -176 : -169 TGTAAAGT AC RSP00864 Mean Expected Number 0.005 -strand -86 : -94 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -88 : -96 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -90 : -98 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -92 : -100 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -94 : -102 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -96 : -104 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -87 : -103 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -89 : -105 GAGAGAGAGAGAGAGAA AC RSP01283 Mean Expected Number 0.000 -strand -93 : -109 GAGAGAGAGAGAaAGAA Totally 11 motifs of 4 different REs have been found Description of REs found 377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nodulin MtN3 family protein |LOCUS: AT5G50800 |PROD: the same as GENE |complement(20682303..20684530) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.30 C - 0.20 1 atactaacgt aacagacgcc aagagtgcat accacataaa agtttcatat 51 attttccatt taaaagaata catcaattag aaatatctga gaccaataat 101 gtgacacgtc cttctcgatg tcgtcttaaa cgtattaacA TTGCatactt 151 tcacatgtga accctcTATA TATAtcttcc atctttggca ttgtaaattc 201 ATAGCTAAAA CTCACAAACT AGAGCTTCAA GAGTTAGAAG AGGCTTCAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00821 Mean Expected Number 0.001 +strand -98 : -89 GaCACGTCCT AC RSP00891 Mean Expected Number 0.008 -strand -146 : -154 AAAATATAT AC RSP01035 Mean Expected Number 0.007 -strand -92 : -98 ACGTGTC AC RSP01068 Mean Expected Number 0.009 +strand -101 : -93 TGTGACACG AC RSP01201 Mean Expected Number 0.002 -strand +29 : +22 TGAAGCTC AC RSP01237 Mean Expected Number 0.001 +strand -37 : -28 CTCTATATAT AC RSP01469 Mean Expected Number 0.007 +strand -50 : -41 TCACATGTGa AC RSP01469 Mean Expected Number 0.009 -strand -41 : -50 TCACATGTGa Totally 8 motifs of 7 different REs have been found Description of REs found 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT5G50915 |PROD: the same as GENE |complement(20727435..20729541) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.32 C - 0.21 1 ctcgatatta tatataaaca tatcatctaa cataaattac ccgccgaaat 51 atggtagtaa tttcttctca aataaaaagg tatcttcaat atacaagtgg 101 tccctaaaat actctttctt ctgtttctcc ttgtttcttt gaatagtgaa 151 tacaaaagca attccttaTA TAAACCactt caagtcctta atcttctctc 201 ACAAAGAAAA AACACTATCT CTATCGACAA AGATAAGAGA ACTCAGAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.002 +strand +30 : +38 AAGATAAGA AC RSP00522 Mean Expected Number 0.002 -strand -101 : -107 CCACTTG AC RSP00895 Mean Expected Number 0.000 +strand -104 : -97 GTGGTCCC AC RSP00914 Mean Expected Number 0.009 -strand -174 : -183 GATGATATGT AC RSP01017 Mean Expected Number 0.006 -strand -63 : -70 AGAAACAA Totally 5 motifs of 5 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AP2 domain-containing transcription factor |LOCUS: AT5G51190 |PROD: the same as GENE |complement(20817810..20818642) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.42 G - 0.08 T - 0.23 C - 0.27 1 aagacatagc cacaaatcct tcattatctt aaaataataa atgatagagt 51 agtccacttg ccacactcca aagcaacaat agaactaaac aagtcaaaac 101 aATTGAaaag gatccttcct ctctccaacc caagaagcta gctacgaaac 151 ctctcaatcc cactttTATA TATAacctcc aatctcaaaa accaaaatcc 201 ATAATCAAAA CCACAAAGAA GACTCCAACA TAATTCATCA TCTATGGCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.004 -strand -90 : -96 CCTTTTC AC RSP00522 Mean Expected Number 0.009 +strand -147 : -141 CCACTTG AC RSP00683 Mean Expected Number 0.002 -strand -139 : -148 GgCAAGTGGA AC RSP00863 Mean Expected Number 0.001 -strand -77 : -85 AGAGAGGAA AC RSP01083 Mean Expected Number 0.002 +strand -81 : -70 TCTCtCCAACCC AC RSP01602 Mean Expected Number 0.010 +strand -49 : -42 TCTCAATC AC RSP01636 Mean Expected Number 0.003 +strand -135 : -125 CTCCAAAGCAA AC RSP01638 Mean Expected Number 0.003 +strand -135 : -125 CTCCAAAGCAA Totally 8 motifs of 8 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G51440 |PROD: the same as GENE |20908389..20909437 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.37 C - 0.22 1 gaagataaat ttacaaatct gggccccaaa gtgatgggcc gtcacggaaa 51 aagttttctt ctttcttttt ctttattttt ctttatttta cttggagacc 101 acgcagttct agaaccatcc ttaagcgact ctctagcctc tagcagcttc 151 ttctactctc tgttctaTAT AAACCtttct ctaacagctt ttttttcgtt 201 CAAAGAGTAT AAAAAATATC TCATCGAGCT TGAAAATAAT TAATCACTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.006 +strand +37 : +45 TAATTAATC AC RSP00709 Mean Expected Number 0.005 -strand +42 : +34 TAATTATTT AC RSP00889 Mean Expected Number 0.006 +strand -102 : -96 CCACGCA Totally 3 motifs of 3 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phosphate-responsive 1 family protein |LOCUS: AT5G51550 |PROD: the same as GENE |complement(20956720..20958121) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.34 C - 0.19 1 ttcaaaactt caatataatc cttttcagtg aacaacaaaa ctctatagtt 51 taactattct gaaatgaaaa atgtttattt ttaaaaaagc tctattttgg 101 gattaatgaa ccaaaacaaa attatataat ttcatattta aaacaaatgt 151 agtacgaatt aaataatccT ATATATAcac caacttcaca ctccatgact 201 CTTCAGACAA GTCGGTCCAC TAATTCAAAT TTTCTCCATT CTCTCGTTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00422 Mean Expected Number 0.003 -strand +16 : +11 ACCGAC AC RSP00654 Mean Expected Number 0.007 +strand -23 : -14 CACCaACTTC AC RSP00943 Mean Expected Number 0.002 -strand -134 : -144 TCATTTCAgAA AC RSP01114 Mean Expected Number 0.008 -strand -101 : -107 CCAAAAT AC RSP01596 Mean Expected Number 0.002 +strand -144 : -134 TTcTGAAATGA Totally 5 motifs of 5 different REs have been found Description of REs found 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51880 |PROD: the same as GENE |21106659..21108167 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.35 C - 0.13 1 agaaacaccc ttgtagttgg gtcatatata attttattgg gcttgaatat 51 acaaggttgg gctttaacaa acaattaata attgggtctt gagaatgatt 101 tttctttttg tcaaaatata tatatttgtc attttgaatt taactaaaat 151 aaattatTAT AAATGaattt aacaaattta atttccctga atctgatctt 201 AAATCCTCCT CAGAAACCCA GAAACGCGAA GATGGGAGAC AATGGAGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00566 Mean Expected Number 0.001 -strand -145 : -154 CCTTGTATAT AC RSP00953 Mean Expected Number 0.010 -strand -117 : -125 CAATTATTA AC RSP01347 Mean Expected Number 0.000 -strand -137 : -147 AAGCCCAACCT AC RSP01598 Mean Expected Number 0.010 +strand -74 : -67 TGTCATTT Totally 4 motifs of 4 different REs have been found Description of REs found 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1230. Group RE: IMH2 /AC: RSP01347//OS: Cucumis sativus /GENE: ICL/RE: IMH2 /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: TCP family transcription factor, putative |LOCUS: AT5G51910 |PROD: the same as GENE |complement(21111773..21113058) |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.17 1 aaaccggttc aactgtacaa ctatcaataa aaaaaaaaaa attagctcca 51 caacatgact cttgtgatgt ggtcgaggcc aaggcccatt agttagctaa 101 aacaggccca tatgaagtat gtgatctaga ccgttgattt gtaatgggac 151 taTATAAAAA taaaaacgat gatcttgagg gccccttctt ccatctttgt 201 AGGGTTCTTC GTGCAGAGGA TAAGGTTAGC TGTGGTTTTT TAATTTTATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.001 +strand -73 : -65 AGACCGTTG Totally 1 motifs of 1 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AP2 domain-containing protein |LOCUS: AT5G52020 |PROD: the same as GENE |complement(21141184..21142174) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.27 C - 0.19 1 actgaggaat aaggtgagag caaaattgca atttctcttt atacgatcat 51 aaacaaatca taaatctaat cgtatttatg tgtaacagct cacatcttct 101 aacaaaaaaa cggagcttct tacgaatttg ccacggtttt ACAATctctc 151 tcattcaaaa acatcaTATA TATAcacaaa cacactttga tacaacaaaa 201 AAAAACAGAA CACAAACAAA AACACATTGT AACATTAGTT TAAGCATTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.006 -strand -10 : -19 AtCAAAGTGT AC RSP00615 Mean Expected Number 0.004 -strand -183 : -188 CTCACC AC RSP01054 Mean Expected Number 0.001 -strand +36 : +26 AAtGTTACAAT Totally 3 motifs of 3 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G52250 |PROD: the same as GENE |21234081..21235444 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.35 C - 0.16 1 taaatatttg gcttaactaa aattatatac atggtttctt ctacatctag 51 taaaaaaaaa agatagataa accatgatac ctatgtatat gtatttatat 101 taaatttaaa tataccccac attttttgtt ttcgtcaaca aacaaaccac 151 tttatagctT ATATATAcac atcacacaca catatgaatg tgatgttaat 201 ATAGTTTCGT GTGGACCTAA CTAAAACTAG TCGTAACTCA TTCATGGAGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.009 -strand -167 : -173 CCATGTA AC RSP00331 Mean Expected Number 0.004 -strand -163 : -171 GAAACCATG AC RSP00674 Mean Expected Number 0.000 +strand -62 : -49 CAAaCAAACCACTT AC RSP01000 Mean Expected Number 0.002 +strand -89 : -80 ATaCCCCACA AC RSP01469 Mean Expected Number 0.007 -strand -14 : -23 TCAtATGTGT AC RSP01711 Mean Expected Number 0.009 -strand +30 : +21 CTAGTTTTAG Totally 6 motifs of 6 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 645. Group RE: Box 2 /AC: RSP00674//OS: Pisum sativum /GENE: PSPAL2/RE: Box 2 /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: photoassimilate-responsive protein, putative |LOCUS: AT5G52390 |PROD: the same as GENE |complement(21281162..21282490) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.09 T - 0.38 C - 0.19 1 aagagtttgc ctaactaata taactacgac tttttcagtg accattccat 51 gtaaactctg cttagtgttt catttgtcaa caatattgtc gttactcatt 101 aaatcaagga aaaatatACA ATtgtataat tttcttatat tttaaaatta 151 attttgatgt attacccctt TATAAATAgg ctatcgctac aacaccaata 201 ACTACACCCA AAAGAACATC TTTCCTTCGA ATTTTCTTTC AATTAACATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00773 Mean Expected Number 0.006 -strand -95 : -104 TGATTTAATG Totally 1 motifs of 1 different REs have been found Description of REs found 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: myb family transcription factor |LOCUS: AT5G52660 |PROD: the same as GENE |complement(21376285..21379384) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.32 C - 0.21 1 gtataaacgg atacaaaaca taaatggaaa aatctttatt ataaagatcc 51 aaatacgtgg cacgttatat taggtcacaa gaactatttt gccgacctca 101 aaaacgatca caagaataag tttctttcat cgagaaacac aacatataca 151 caaaaaaact atagctTATA AATTtattaa tattttaata aaatctctgc 201 CGTCTTCTTC TTTCTCATAA GCCACATTTC TTCTCTCTTT CTCTCCTACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.000 +strand -147 : -140 TACGTGGC AC RSP00064 Mean Expected Number 0.001 +strand -149 : -140 AaTACGTGGC AC RSP00359 Mean Expected Number 0.008 +strand -110 : -105 GCCGAC AC RSP00819 Mean Expected Number 0.001 -strand -140 : -149 GCCACGTaTT AC RSP00861 Mean Expected Number 0.002 -strand +42 : +34 AGAAAGAGA AC RSP01030 Mean Expected Number 0.007 -strand -76 : -83 AGAAACTT AC RSP01034 Mean Expected Number 0.001 +strand -146 : -140 ACGTGGC Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G52810 |PROD: the same as GENE |21416557..21417829 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +193 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.25 C - 0.18 1 ataaagaatg cgatccagat agtgctgcta gcagaggctc atggtggctt 51 gaagcagtta aagtcgcaga tgatcttgaa agcaaaccca agacacttga 101 acctcttacc tgggtcagtt gacttATTGT tattgactta agactctgtc 151 taatttctcg agaatatTAT AAAGAaaaag ctttggctca caggaaaatt 201 ACGAGGAAGA TGATGACTGG TGGGTAGCAG CTGCAGAAGA GTCACTAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01631 Mean Expected Number 0.001 +strand -126 : -116 CTTGAAAGCAA AC RSP01638 Mean Expected Number 0.001 +strand -126 : -116 CTTGAAAGCAA AC RSP01739 Mean Expected Number 0.000 +strand -71 : -59 TTATTGACTTAAg Totally 3 motifs of 3 different REs have been found Description of REs found 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown 1546. Group TF: WRKY11 /AC: RSP01739//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G52975 |PROD: the same as GENE |21498683..21499261 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.31 C - 0.17 1 accagactca tgttgagata catttacatt agtcaactaa cttaatgtaa 51 gaaaattcaa tacatgaaat ctctaaatga gttacatttt tagacaacat 101 ttaaaATTGA tctgttacac tttgagttac ttttggttta tctaagaaaa 151 acttgtttcg tgatccTATA AATActacct ttcttgctaa atccaaaagc 201 ATCCAAACAT CTAAACCAAA AAGGAAACAA AACATATCAA AGGGTTAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00949 Mean Expected Number 0.005 +strand -171 : -164 TAGTCAAC AC RSP01233 Mean Expected Number 0.008 -strand -13 : -19 AGCAAGA AC RSP01250 Mean Expected Number 0.005 +strand -149 : -140 AAAATTCAAT AC RSP01301 Mean Expected Number 0.002 +strand -35 : -26 CTATAAATAC AC RSP01644 Mean Expected Number 0.000 +strand -155 : -143 TgTAAGAAAATTC Totally 5 motifs of 5 different REs have been found Description of REs found 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1464. Group TF: WRAF1; WRAF2 /AC: RSP01644//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np5-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G53710 |PROD: the same as GENE |complement(21822485..21823020) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.19 1 ctctattttt cttttggtca ttaagatacc cattgatccg aatctgttac 51 attcccacct acttttttaa tttttactat ccactccaaa ttaaacacaa 101 ccgatgattt taataATTGG aagcttttaa aaatatttca aaacaagcct 151 ctttgtgttt gtcTATATAT Atacacgtaa taagaaggtg aatgaatctc 201 ACAGCTTACT TGTTCTAAGG CTTCCAATAA CGAAAACAGT AATGAAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.003 +strand -147 : -138 CCCACCTACt AC RSP00117 Mean Expected Number 0.003 -strand -63 : -75 AAaTATTTTTAAA AC RSP00405 Mean Expected Number 0.007 -strand -111 : -118 TTTGGAGT AC RSP00680 Mean Expected Number 0.008 -strand -152 : -161 TAACAGAtTC AC RSP00953 Mean Expected Number 0.006 -strand -82 : -90 CAATTATTA AC RSP01261 Mean Expected Number 0.005 -strand -21 : -28 TTACGTGT Totally 6 motifs of 6 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G54095 |PROD: the same as GENE |complement(21969959..21970723) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.31 C - 0.17 1 aaaccaaaaa cgcaagagcg gttgagaata aggtttggtt gttctcctga 51 tgaataggtc gttgacagag aagagcctta aagaacctaa ggtgacatga 101 aatttttagc ccttttcctg aaatagcttt gtgttgtgtt gtgttggtac 151 gaaccacTAT ATATAtctct tttgtgtctt cacctacatt tgctcagcct 201 CTAATAAGGA GAAAAAAGAA ACAAACAGTT TTGGCTTCTT GAAAGGAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 -strand -26 : -35 AcAAAAGAGA AC RSP01017 Mean Expected Number 0.008 +strand +17 : +24 AGAAACAA AC RSP01237 Mean Expected Number 0.008 +strand -46 : -37 CaCTATATAT AC RSP01237 Mean Expected Number 0.008 +strand -44 : -35 CTaTATATAT AC RSP01761 Mean Expected Number 0.001 -strand -163 : -174 CCAAACCTTaTT AC RSP01767 Mean Expected Number 0.006 -strand -93 : -101 TAAAAATTT Totally 6 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATOMT1 |LOCUS: AT5G54160 |PROD: |21999223..22001589 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.33 C - 0.22 1 ctattattta tttttattaa attttctgac attatggcct attattaatt 51 gataaaatac aaaagaatgg atgtgtctcg attttcaatt ggaccaaatc 101 attaagccag atcagaaaat tgcgttaaaa tatgCCAATc gtctctacct 151 tctttaatat attttcaTAT AAATAaacct ctcaacctcc acactttctc 201 ACCCATCACA CAATCCTCAA AACAGAGTAA CCCAAAAAAC AGAGCAATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00140 Mean Expected Number 0.002 +strand -195 : -183 AtTTATTTTTATT AC RSP00416 Mean Expected Number 0.003 -strand -128 : -134 CATCCAT Totally 2 motifs of 2 different REs have been found Description of REs found 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PBP1 |LOCUS: AT5G54490 |PROD: calcium-binding EF-hand protein, putative |22138630..22139157 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.10 T - 0.36 C - 0.24 1 cagcttttca cattatgaac ctcccgtggg aacaaagaca tttataccct 51 tacgtgagct tccaagaaga aaccaacaat ttttaagatt tttccccatt 101 acatgtagat tagttggctt caagtttcta tggatgttcc ttctcggaaa 151 tccataattc tcttccttta taTATAAAAC ttactcacaa cacaaaaccc 201 ATCTCTCAAA ACAATCAATT TCTCTCAAAC TGTTTTACTT TTTCTTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00416 Mean Expected Number 0.003 -strand -65 : -71 CATCCAT AC RSP00850 Mean Expected Number 0.007 -strand -83 : -88 GCCAAC AC RSP01030 Mean Expected Number 0.009 -strand -72 : -79 AGAAACTT Totally 3 motifs of 3 different REs have been found Description of REs found 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RAT5 |LOCUS: AT5G54640 |PROD: histone H2A |22213703..22214713 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.31 C - 0.20 1 ggaaaatttg gaaattccct cgtccagaag aaaccaacaa aaactgcaaa 51 agttcaagcg gtgggagaaa aaacttcaga tcgtagccat tcattaaatt 101 ataatcaacg gtttaaacct cttcgatccg cgtactctat tcttATTGGt 151 caaataactt aatcctccaa cataTATAAA CAacaatcag atttctctct 201 GTTAATTTCG TCAAGAAAAA AATTCGATTT TTTTGCGCTC TTTGTGGGTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.002 -strand -134 : -140 CTCCCAC AC RSP00839 Mean Expected Number 0.001 -strand -69 : -76 CGCGGATC AC RSP00961 Mean Expected Number 0.005 +strand -156 : -149 TGCAAAAG AC RSP01150 Mean Expected Number 0.001 +strand -104 : -94 AATTATAATCA AC RSP01740 Mean Expected Number 0.000 -strand -45 : -57 TAtTTGACCAATA Totally 5 motifs of 5 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1547. Group TF: WRKY11 /AC: RSP01740//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS2 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: TSB1 |LOCUS: AT5G54810 |PROD: tryptophan synthase, beta subunit 1 (TSB1) |complement(22281834..22284011) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.39 C - 0.10 1 aatcaatatt taatttttgt ttttttttgt ttttttttat gaagacaaca 51 aataaccaaa tttatcaaat ctgatcaaag cagatttagg attttacaaa 101 tatatttttt taatatgaat tttgtggtca gattttgaCC AATtctcttt 151 gaaaaaaaaa aaaatctatc TATAAAAAca tgtgttactt tgaaaggata 201 TTTCAAGGAG AAGAATATAT TTGACTCAGA GAGAGATTCA TTCAGTAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.007 -strand +28 : +22 TGAGTCA AC RSP00383 Mean Expected Number 0.007 -strand -61 : -67 GGTCAAA AC RSP00745 Mean Expected Number 0.003 +strand -9 : +3 GAAAGGaTATTT AC RSP00864 Mean Expected Number 0.001 +strand +28 : +36 AGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: eukaryotic translation initiation factor SUI1 |LOCUS: AT5G54940 |PROD: the same as GENE |complement(22325497..22326634) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +649 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.27 C - 0.23 1 aaatagataa ttattctctg cgtctcacac cagttattct aaacgtgaaa 51 ccttccccac ttggtcacta attcgaactt atccatccac gtgtctagaa 101 aataatagat ctacggctaa gatttagccg ccataaaaag aagatctatg 151 gtaaaaaaaa aaggtcTATA AATAcaaaac cttccttaag ctttcttctt 201 CATCAATTGA ATTAACAAAA ACTCCAAAGA CTCCATCGAA CAAAACCTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 +strand -75 : -69 AGCCGCC AC RSP00057 Mean Expected Number 0.005 +strand -115 : -106 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 -strand -106 : -115 GACACGTgGA AC RSP00188 Mean Expected Number 0.003 +strand -115 : -106 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -106 : -115 GACACGTGGa AC RSP00340 Mean Expected Number 0.003 +strand -115 : -106 TCCACGTGTC AC RSP00438 Mean Expected Number 0.009 -strand -69 : -74 GGCGGC AC RSP00522 Mean Expected Number 0.010 +strand -144 : -138 CCACTTG AC RSP00524 Mean Expected Number 0.005 -strand -107 : -113 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -106 : -115 GaCACGTGGA AC RSP00807 Mean Expected Number 0.009 +strand -74 : -69 GCCGCC AC RSP00837 Mean Expected Number 0.001 +strand -94 : -85 AGATCtACGG AC RSP01011 Mean Expected Number 0.000 +strand -75 : -67 AGCCGCCAT AC RSP01035 Mean Expected Number 0.005 +strand -112 : -106 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -107 : -114 ACACGTGG AC RSP01274 Mean Expected Number 0.004 +strand -115 : -106 TCCACGTgTC AC RSP01296 Mean Expected Number 0.010 +strand -35 : -27 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -35 : -26 CTATAAATAC AC RSP01722 Mean Expected Number 0.000 +strand -116 : -105 ATCCACGTGTCT AC RSP01734 Mean Expected Number 0.010 +strand -115 : -109 TCCACGT Totally 20 motifs of 20 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G55620 |PROD: the same as GENE |22547430..22548165 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +169 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.36 C - 0.19 1 ctactcgtta taatcatact tttgtttaat taaaaaaaca aaaacaaata 51 atttctagta catcttatat tacatactat agtttgatga taaaaataaa 101 attcaaatga cgattatcat gtcgaaaaga caaataataA TTGTcttact 151 gacctacctg cctgcctcTA TATATAtact agtctttggt cgcctttact 201 ATAACCAAAC ATCGAGCTTG CCTTAGAGTT TGTCTCAAGC TTCTCCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00535 Mean Expected Number 0.002 +strand -41 : -25 GCCT-- +7 bp --TATATA AC RSP00953 Mean Expected Number 0.006 -strand -58 : -66 CAATTATTA AC RSP01237 Mean Expected Number 0.002 +strand -35 : -26 CTCTATATAT AC RSP01636 Mean Expected Number 0.001 -strand +28 : +18 CTCTAAGGCAA Totally 4 motifs of 4 different REs have been found Description of REs found 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ubiquitin-conjugating enzyme, putative |LOCUS: AT5G56150 |PROD: the same as GENE |22746408..22748409 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +574 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.29 C - 0.23 1 aatccttctt ctattttctt tttccaaatt tgcataacgt ttcttattat 51 ggacaaaaga gtcaatgggc tccgtcagta aacgattggg ccttattata 101 gcccataagt acagaatcta gctcgctacg tggcaaagct tcaccgctcg 151 aaagagagga atctaTATAA ACCgtatcga tgctaacaag tttcatcttc 201 AAAACAACCC CTTGAGATTT CCGAAGATCA TCAAATCCAA AACCCTAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -74 : -67 TACGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -76 : -67 GCtACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -67 : -76 GCCACGTaGC AC RSP00186 Mean Expected Number 0.000 +strand -75 : -65 CTACGTGGCaA AC RSP00189 Mean Expected Number 0.002 -strand -67 : -76 gCCACGTAGC AC RSP00863 Mean Expected Number 0.001 +strand -48 : -40 AGAGAGGAA AC RSP01032 Mean Expected Number 0.004 -strand -149 : -158 CCATAATAAG AC RSP01034 Mean Expected Number 0.005 +strand -73 : -67 ACGTGGC AC RSP01259 Mean Expected Number 0.001 +strand -75 : -68 CTACGTGG Totally 9 motifs of 8 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 180. Group RE: G-box motif /AC: RSP00186//OS: Oryza sativa /GENE: Amy3D/RE: G-box motif /TF: unknown 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATEXPA14 |LOCUS: AT5G56320 |PROD: expansin, putative (EXP14) |22825867..22827463 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +213 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.39 C - 0.17 1 ggagtttatt aaagtaaagt tttacaaatt gtactactat ctcctaatag 51 atccataaaa caatttaaaa attactagtg tagtttagct aataaaaatc 101 acttGCAATg caagtgtttg attaaaaata atttaagtat aatttttttt 151 cttttgcaga aatttcttcT ATATATAatc atcccatctc ctcataactc 201 ACAACAACAT TGAAACCCAT TTCTTCGCCT TTAACCTTAC TTGAATTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.006 -strand -68 : -80 AATTATTTTTAAt AC RSP00140 Mean Expected Number 0.005 -strand -68 : -80 AATTATTTTTAaT AC RSP00961 Mean Expected Number 0.005 -strand -43 : -50 TGCAAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57123 |PROD: the same as GENE |complement(23144148..23144880) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +236 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.31 C - 0.18 1 tattccattt tatttttatt ttgatttgaa agtaattaac caaatttgac 51 aacataatta agtcagcaat aaatacctca gatagtaaaa tatccaggca 101 aaccaaaaaa agaagtcaag taataaaacg ggcaaaaagc aaagccgttt 151 ttttcctcct ttctcTATAA AGTctcgttc atgcaccaac caaatatcct 201 ATCTTAGCGA CTTAAAAAAA TAAGACTTCA AAATTTGCTC TTTCAATATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.008 +strand -21 : -15 CATGCAC AC RSP00990 Mean Expected Number 0.009 -strand -68 : -72 GCCCG AC RSP01209 Mean Expected Number 0.001 -strand -89 : -98 CTTTTTTTGG AC RSP01687 Mean Expected Number 0.006 -strand -54 : -60 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 911. Group TF: p33TCP20 /AC: RSP00990//OS: Arabidopsis thaliana /GENE: CYCB1;1/RE: p33TCP20 BS1 /TF: p33TCP20 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT5G57150 |PROD: the same as GENE |23169412..23172760 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +175 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.41 C - 0.12 1 gactaatcaa aaagacctcg tgtcgaatat catcataaat taataaaata 51 atattctgct ggagctggtc attttttttt ttttttttta attaggaaat 101 atctagattt ttatattgac caattagTCA ATtactgatt tactctagat 151 cttattttTA TATATAtcta agaatagaca ttataattat tttcttgcag 201 TAAGATACAA CGGCGGTGTC GTGTGTGTAT AACTGGAAAA TTACGTTGTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01231 Mean Expected Number 0.008 -strand +13 : +8 CCGTTG Totally 1 motifs of 1 different REs have been found Description of REs found 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: xylose isomerase family protein |LOCUS: AT5G57655 |PROD: the same as GENE |23363987..23367230 |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +269 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.28 C - 0.17 1 ttattgttgg gaagtaatga aaaaaaactc aacaaaattc gatttaatac 51 ctatccataa tattattgat cctaaaaata gaaaaggata attttgctga 101 gtcagaaacg tgatattcgc gacgttgttt ccggataaag agtaaacgta 151 cgactgcttt aactcaccTA TAAAATcacg accgtcgatt tcatttatgt 201 CAAGGGGCAA AACTGAAAAT CACACAAAAA CAAACAAAAC TTTGCTTACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00837 Mean Expected Number 0.002 -strand -10 : -19 AaATCGACGG AC RSP00838 Mean Expected Number 0.008 +strand -19 : -14 CCGTCG Totally 2 motifs of 2 different REs have been found Description of REs found 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BNR/Asp-box repeat family protein |LOCUS: AT5G57700 |PROD: the same as GENE |23392100..23394367 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +401 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.36 C - 0.18 1 gaaaccgatc cgagaggaag agatttgttc tgatttttct gtttgttttg 51 tttttttcga ccgttgagct tattttcagg acaaataaaa accgttccct 101 tctcattaac taccaacttt ttgttattta tataagcccA TTGGgctttt 151 ataggcctgt tgtctgttTA TAAAAGcctg tagagttaaa tctgcaaatc 201 ACAAAGGAAA ACGTTAATGG TGGATCTGAG CACTGTCAAT GTCATCACCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.007 +strand -94 : -85 TAaCTACCAA AC RSP00842 Mean Expected Number 0.001 -strand -187 : -194 CTCGGATC Totally 2 motifs of 2 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57785 |PROD: the same as GENE |complement(23426122..23426648) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.11 T - 0.39 C - 0.22 1 gacaaattac tctatcattt ccgctgcaat cagtcaaaag ttttttttgt 51 atcaatggtt tatacttact accgtataaa tacatagcta atatctttca 101 cacgtgtgca tacgtggATT GAtactatat caagcgtggg agaattattc 151 atatttcatc cgacttatcT ATAAAGAcac atagtctctc ttgttcttct 201 AATCCACATA TCATCACAAA CTTTCTCTCT CATTCTCTTT TTAGCTTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.000 -strand -59 : -65 CTCCCAC AC RSP00524 Mean Expected Number 0.004 +strand -101 : -95 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -94 : -100 ACACGTG AC RSP00914 Mean Expected Number 0.009 -strand +15 : +6 GATGATATGt AC RSP01256 Mean Expected Number 0.002 +strand -101 : -94 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -94 : -101 ACACGTGT AC RSP01274 Mean Expected Number 0.001 -strand -83 : -92 TCCACGTATg AC RSP01469 Mean Expected Number 0.009 +strand -103 : -94 TCACAcGTGT AC RSP01727 Mean Expected Number 0.000 +strand -103 : -92 TCACACGTGTGc AC RSP01727 Mean Expected Number 0.000 -strand -92 : -103 gCACACGTGTGA AC RSP01734 Mean Expected Number 0.002 -strand -83 : -89 TCCACGT Totally 11 motifs of 8 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1535. Group TF: STF1/HY5 /AC: RSP01727//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (2) /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G58030 |PROD: the same as GENE |complement(23504042..23505833) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.32 C - 0.19 1 cgagaaagag agagagagag acggtgaagc tttaagggct tcttctcaac 51 aagtctcggc ttctttttat catcgctagg gtcttattta tacacttatt 101 tacccctttt tttttctacc CCAATtagga ttagtgaaaa agtaaaaatt 151 aatattaaca aaaaTGTAAA TAaactcttt ttttgtactt tcatcgaacc 201 AAAAGACAAA CCAGGTTGCA ATAAACAAAA GCATCTTCAG ATTCTTTCAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -64 : -53 AAAAAGTAAAAA AC RSP00861 Mean Expected Number 0.001 +strand -198 : -190 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -194 : -186 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -192 : -184 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -190 : -182 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -188 : -180 AGAGAGAGA AC RSP01499 Mean Expected Number 0.002 -strand -173 : -182 TTCaCCGTCT Totally 7 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: lipocalin, putative |LOCUS: AT5G58070 |PROD: the same as GENE |complement(23517287..23518435) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.31 C - 0.25 1 cccattgtat tgtatccttc ttcccacaga acaaggaaga catttgtgtc 51 ctccaccttt attcacattt gtaactgcta gacgctacta gaacccttgc 101 cctacacgct ttccacgtgg catcctctcg tcccagcgaa atctccttga 151 tattattttt ttatttcctT ATAAAGAaca gaatctcttc ttatcctttt 201 ACCTCAAAGA AAACATCGAA ATCTTAGAGA AGAAGAAAAG AAAAAGAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -89 : -80 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -80 : -89 GCCACGTGGa AC RSP00153 Mean Expected Number 0.002 +strand -88 : -79 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -87 : -80 CACGTGGC AC RSP00189 Mean Expected Number 0.003 +strand -89 : -80 TCCACGTgGC AC RSP00340 Mean Expected Number 0.005 +strand -89 : -80 TCCACGTGgC AC RSP00682 Mean Expected Number 0.002 -strand -80 : -89 GCCACGTGGA AC RSP00683 Mean Expected Number 0.005 -strand -80 : -89 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -88 : -81 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -81 : -88 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -89 : -80 TCCACGTGGC AC RSP00938 Mean Expected Number 0.000 -strand -79 : -90 TGCCACGTGGAA AC RSP01034 Mean Expected Number 0.004 +strand -86 : -80 ACGTGGC AC RSP01469 Mean Expected Number 0.008 +strand -138 : -129 TCACATtTGT AC RSP01593 Mean Expected Number 0.000 +strand -89 : -78 TcCACGTGGCAT AC RSP01642 Mean Expected Number 0.003 -strand -156 : -165 AAATGTCTtC Totally 16 motifs of 14 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S4 (RPS4D) |LOCUS: AT5G58420 |PROD: the same as GENE |23636732..23638320 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.33 C - 0.21 1 aatcccagaa cccgttcagt atttgaattt agttttttta tggccacgct 51 cgtttcgagt ttgggcctgg ctggatattt ttttacccac aacaaatctc 101 tacccatata tataaatggg cctctcactt aataagccca taatacccta 151 acatcatgga gttggaagag ggtaTATAAA TGgccaatta gggttttgta 201 CGTGCTCTCA CTTTTTCTCT CAAGTGGTTC GGAGCTGTTT CTAAGAAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.004 +strand -95 : -84 ATaTATATAAAT AC RSP00157 Mean Expected Number 0.004 -strand -84 : -95 ATTTATATAtAT AC RSP00279 Mean Expected Number 0.002 +strand -13 : -5 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -5 : -13 AAACCCTAA AC RSP00522 Mean Expected Number 0.008 -strand +27 : +21 CCACTTG AC RSP01303 Mean Expected Number 0.004 -strand -4 : -13 aAAACCCTAA Totally 6 motifs of 5 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (Ran-binding) family protein |LOCUS: AT5G58470 |PROD: the same as GENE |complement(23654933..23658146) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.33 C - 0.12 1 gggccttcgt aaaggttaga tgattatggg ccttagaacc atgttgtctt 51 atttgataaa aaaagcaagt ccagttattt tgggaaaccg gtcggtaaaa 101 gataagatgt aaaagaattt aagatttaag ataaatGCAA Taataaagtt 151 ccactatttt tgagagaaaT ATAAATAaaa cgcgagattt tttattctac 201 GTCTAAAAAG GCTCTCACAC GATTCGTTAA GAGTTTTGGT CTGTTGTTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.006 +strand -102 : -94 AAGATAAGA AC RSP00642 Mean Expected Number 0.010 +strand -69 : -62 TAAATGCA Totally 2 motifs of 2 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: COPT3 |LOCUS: AT5G59040 |PROD: copper transporter family protein |23853912..23854485 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.08 T - 0.28 C - 0.21 1 tactttttca attttaagac ttaaaaggaa cagatctttg gacataatct 51 caacaaaata tctttgaagt acacttttaa actctaataa aatcacaatt 101 atcgcattat tgttgtaaaa atgtacATTG Tactacacac caaactccaa 151 cccaaaaaca aaaccctTAT AAATAcacac acacaagtat acacaacaac 201 AAAATCTTCA CATTGCACGT AAAAAATATC TTTATACAAT GAACGGCATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00870 Mean Expected Number 0.005 +strand -87 : -78 TGTAAAAaTG AC RSP01621 Mean Expected Number 0.006 +strand -131 : -122 TACACTTTTa Totally 2 motifs of 2 different REs have been found Description of REs found 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G59105 |PROD: the same as GENE |complement(23879685..23880279) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.36 C - 0.14 1 ttatactctg taaaacctat cgcaaattga agtttttaaa aaatcactaa 51 ttaatgttag gtaagaaaac cttttctttg tttagttttt ttactataaa 101 tctaagaaaa gaaATTGGaa gattttttcc ttttcatata tctttgacca 151 caaaatcaca ctttatcTAT ATATAtatat acttatccta agtgtaaaaa 201 ACAAAGGTCC AAGTCTATCA TAAAATGGCT ATCACAAAAA AAAAATTAGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 -strand -145 : -154 CATTAATTAG AC RSP00383 Mean Expected Number 0.009 -strand -52 : -58 GGTCAAA AC RSP01008 Mean Expected Number 0.004 -strand -139 : -145 ACCTAAC AC RSP01093 Mean Expected Number 0.003 +strand -100 : -90 TCTAAGaAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: UXS3 |LOCUS: AT5G59290 |PROD: UDP-glucuronic acid decarboxylase (UXS3) |complement(23932756..23935418) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +239 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.37 C - 0.15 1 aaagtaaaca aattgccacg taagatatct gttaggtcaa acgttgacgt 51 gatttagtag ctaacgtcaa ttagttaatt tccgcatttc gtgtatttga 101 agtctcttct ttaacttaaa attatttctg taattccttt ctttaaacaa 151 aacagaacga AATAAATAaa aaattcttcg attttgttat ttgttagatt 201 GAAGTTCAGA CACCTAGGAC TATAAGTAGA CGATCTCTTA TTGTCTTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand -179 : -186 TACGTGGC AC RSP00247 Mean Expected Number 0.002 +strand -186 : -177 GCCACGTAAG AC RSP00248 Mean Expected Number 0.001 +strand -186 : -177 GCCACGTaAG AC RSP00530 Mean Expected Number 0.007 +strand -96 : -85 TCTTcTTTAACT AC RSP00862 Mean Expected Number 0.002 -strand -59 : -67 AGAAAGGAA AC RSP00916 Mean Expected Number 0.002 +strand -158 : -149 GTTGACGTGA AC RSP00917 Mean Expected Number 0.002 +strand -158 : -149 GTTGACGTGA AC RSP00918 Mean Expected Number 0.005 +strand -158 : -149 GTTGACGTGA AC RSP01034 Mean Expected Number 0.002 -strand -180 : -186 ACGTGGC Totally 9 motifs of 9 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G59305 |PROD: the same as GENE |23940428..23941128 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.30 C - 0.17 1 acagtctaat ttcgaagtgg aaatgtcatg gcataggatt ccaagaaatg 51 acattttaac cagagaatct tacctggttt cttcaagcta ggtaatcatt 101 acgattctcc aagggagtac caactagatg tgacaaaatt gttgtATTGT 151 gcgtgttaca catccaaTAT ATATAtgatg cagcatccta tatgaaaaca 201 ATTAATTAGC TAATTCTCTA CATAAGAAAT ATGAGAAGAC ATGATATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.005 +strand -181 : -172 GAaATGTCAT AC RSP01031 Mean Expected Number 0.009 +strand -137 : -130 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RHL41 |LOCUS: AT5G59820 |PROD: zinc finger (C2H2 type) family protein (ZAT12) |24120198..24121013 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.30 G - 0.11 T - 0.27 C - 0.32 1 cggtgtcgca aatcgtgacc acataacccg ttttttcctt cttttacccc 51 ttatctttcc acgtatttac gttaatacct acactcttcg ctgccacttc 101 cttacccacc aagtcacaag ggtatattcg tcactttcca cacgtctttg 151 gtccacacaa actcggtatc TATATATAgt tcccaaacgg acacgaacac 201 ATCATCACAA CTACTATCAC ACCAAACTCA AAAAACACAA ACCACAAGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.007 +strand -62 : -55 CACACGTC AC RSP00934 Mean Expected Number 0.009 +strand -29 : -20 ATATaTAGTT AC RSP00997 Mean Expected Number 0.010 -strand +6 : -4 GATGATGTGT AC RSP01237 Mean Expected Number 0.008 +strand -33 : -24 aTCTATATAT AC RSP01274 Mean Expected Number 0.007 +strand -143 : -134 TCCACGTATt AC RSP01708 Mean Expected Number 0.006 +strand -31 : -22 CTATATATAG AC RSP01708 Mean Expected Number 0.006 -strand -22 : -31 CTATATATAG Totally 7 motifs of 6 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: histone H2A, putative |LOCUS: AT5G59870 |PROD: the same as GENE |complement(24132608..24133444) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.33 C - 0.25 1 gcgctaaact tttaaaatgc tacaaaaaaa ctggcgccgt ttcaaaaagc 51 atacctcttt ttgattggtt aatacatagt cacgcggatc gtgctttatt 101 tgaacatcca ccgtcgatag actaaatcca acggataata atcctctccc 151 ttcttttttt ttcatttacc TATAAATAtc acagagtacc cttcaacttt 201 AAATCACAAA TCTTCAACTT CCGATACTTT CAATCTCTCT AAACTCTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.003 -strand -133 : -139 CCAATCA AC RSP00271 Mean Expected Number 0.000 -strand -111 : -139 GATCCGCG-- ** bp --ACCAATCA AC RSP00272 Mean Expected Number 0.001 +strand -121 : -111 TCACGCGGATC AC RSP00839 Mean Expected Number 0.000 +strand -118 : -111 CGCGGATC AC RSP00947 Mean Expected Number 0.010 +strand -134 : -128 GGTTAAT AC RSP01174 Mean Expected Number 0.002 +strand -58 : -48 CCTCTCCCtTC AC RSP01296 Mean Expected Number 0.007 +strand -31 : -23 CTATAAATA AC RSP01519 Mean Expected Number 0.000 -strand -111 : -137 GATCCGCG-- ** bp --CCAAT AC RSP01733 Mean Expected Number 0.005 -strand -114 : -119 CCGCGT Totally 9 motifs of 9 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 263. Group RE: Type III element /AC: RSP00271//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type III element /TF: unknown 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 876. Group TF: GT-2 /AC: RSP00947//OS: Oryza sativa /GENE: PHYA/RE: GT1-bx /TF: GT-2 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1370. Group RE: Type III element /AC: RSP01519//OS: Zea mays /GENE: H2B (H2B4)/RE: Type III element /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ADF3 |LOCUS: AT5G59880 |PROD: actin-depolymerizing factor 3 (ADF3) |24137457..24139105 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.38 C - 0.11 1 aatagttatt tttttttgtt tggcataaaa taaagaaaat tatttgttca 51 acaaattgtt acagatttca cttatgtata ttttgaacta attcttattt 101 ttatattaat taaatcaaga ttttactttt gaaaaataat taatgaattt 151 atgaaacaat ctctaTGTAA ATAaaataaa gcaaattaaa acgctcacac 201 ATGTTTACTT ATTCGGACTA GAGAGCTTCC GCATAAAGCT GAGGAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00790 Mean Expected Number 0.002 +strand -58 : -48 ATGAATTTATG AC RSP01601 Mean Expected Number 0.009 +strand -135 : -128 TTTCACTT Totally 2 motifs of 2 different REs have been found Description of REs found 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: histone H2B |LOCUS: AT5G59910 |PROD: the same as GENE |24144354..24145161 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.29 C - 0.25 1 cctggccacc aaatgtatcc aataagaacc gtcacgtgtg agagctttcc 51 tccttttcaa gattcctttt caaccgtcga tatcattcta ttaaaaagca 101 gatcaaacgg tacagatatc gatccgcgtc aacttaatgt atCCAATcat 151 atcactccat aggatctaTA TAAAAGcaat atctcaattt tttctaggtc 201 ATCAAGCAAT CCAAAGCGAT TAAACCTACT CAATCTCAGA TCTCGTTAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.000 -strand -70 : -80 TgACGCGGATC AC RSP00524 Mean Expected Number 0.007 -strand -162 : -168 ACACGTG AC RSP00837 Mean Expected Number 0.005 -strand -118 : -127 AtATCGACGG AC RSP00839 Mean Expected Number 0.001 -strand -73 : -80 CGCGGATC AC RSP01152 Mean Expected Number 0.000 -strand -161 : -170 CACACGTGaC AC RSP01205 Mean Expected Number 0.007 +strand -149 : -140 CCTTTTCAAG AC RSP01519 Mean Expected Number 0.000 +strand -80 : -54 GATCCGCG-- ** bp --CCAAT Totally 7 motifs of 7 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1370. Group RE: Type III element /AC: RSP01519//OS: Zea mays /GENE: H2B (H2B4)/RE: Type III element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: histone H4 |LOCUS: AT5G59970 |PROD: the same as GENE |complement(24163401..24163952) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.26 C - 0.18 1 aagcgaagct ctgaagaaca cttatgtagt tatcatgcgg atcacaatta 51 ataaccgttg attaaaatca atcgacggct atcatgtcat atcagtattg 101 acaaggATTG Agcttaacag ccgttagatg ggttattaaa tcggatggtt 151 gaaaacaaaa gccctcttat aTATAAACAa acacgtccag tcaatatctg 201 AAAATCAAAA GCAATTCTTC TTCACACAGT AGCGAAAAAA AGAAATCTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.001 +strand -168 : -158 TCAtGCGGATC AC RSP00459 Mean Expected Number 0.004 +strand -103 : -94 TTGACaAGGA Totally 2 motifs of 2 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: Dof-type zinc finger domain-containing protein |LOCUS: AT5G60200 |PROD: the same as GENE |24258201..24259749 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.39 C - 0.22 1 ttataaattt tttaataaac ggcggcttta tgtctgttcc aagtcacgtt 51 ccgaattggt tcacattatt cttcttagca ttgtttgaaa tattaaacta 101 ataatatgag atcgaggcca caacaACAAT tgtgtgtctc tctcctccca 151 cattcccatc ccatgTATAT ATAcagatgc ttggcttttc cttttgcttc 201 ACTTTTAATT TCTACTCATA TCCATCATTC TCTCTGATCT CAAGAAATAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 -strand -174 : -180 AGCCGCC AC RSP00438 Mean Expected Number 0.002 +strand -180 : -175 GGCGGC AC RSP00807 Mean Expected Number 0.002 -strand -175 : -180 GCCGCC AC RSP00865 Mean Expected Number 0.003 -strand -56 : -64 GGAGAGAGA AC RSP01237 Mean Expected Number 0.005 -strand -25 : -34 CTgTATATAT AC RSP01458 Mean Expected Number 0.003 -strand -185 : -197 ATTaAAAAATTTA Totally 6 motifs of 6 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: F-box family protein |LOCUS: AT5G60610 |PROD: the same as GENE |24380817..24382754 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +458 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.45 G - 0.09 T - 0.35 C - 0.12 1 tgtccaaatc tcttaagttg ataaaagttc ttaggccaaa taaaatttaa 51 tatgaaactt gaacaagaaa tttgacatta attaatcaac ttatgaactc 101 ctcctaatat aaaatagaat attattacaa atacgtaaaa cgtcgtcgtt 151 catttatctg aatatTATAT ATAtatatat atatatatat atatatatat 201 ATATATATAT TTACCCTTTA AGAAAGAAAA AAAATCGAAC TTCAGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00148 Mean Expected Number 0.009 -strand -53 : -57 CGACG AC RSP00148 Mean Expected Number 0.009 -strand -56 : -60 CGACG AC RSP00492 Mean Expected Number 0.000 +strand -40 : +2 AatatTATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -38 : +4 tatTATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -36 : +6 tTATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -34 : +8 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -32 : +10 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -30 : +12 ATATATATATATATATATATATATATATATATATATATATtT AC RSP00492 Mean Expected Number 0.000 +strand -28 : +14 ATATATATATATATATATATATATATATATATATATATtTAc AC RSP00492 Mean Expected Number 0.000 +strand -26 : +16 ATATATATATATATATATATATATATATATATATATtTAccc AC RSP00492 Mean Expected Number 0.000 -strand +16 : -26 gggTAaATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand +14 : -28 gTAaATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand +12 : -30 AaATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand +10 : -32 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand +8 : -34 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand +6 : -36 ATATATATATATATATATATATATATATATATATATATATAa AC RSP00492 Mean Expected Number 0.000 -strand +4 : -38 ATATATATATATATATATATATATATATATATATATATAata AC RSP00492 Mean Expected Number 0.000 -strand +2 : -40 ATATATATATATATATATATATATATATATATATATAatatT AC RSP00860 Mean Expected Number 0.007 +strand +21 : +29 AGAAAGAAA Totally 19 motifs of 3 different REs have been found Description of REs found 144. Group RE: CGACG-element /AC: RSP00148//OS: Oryza sativa /GENE: Amy3D/RE: CGACG-element /TF: unknown 468. Group RE: Zc2 A/T-2 /AC: RSP00492//OS: Zea mays /GENE: Zc2/RE: Zc2 A/T-2 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PIP2;4/PIP2F |LOCUS: AT5G60660 |PROD: |complement(24392686..24394215) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.38 G - 0.07 T - 0.31 C - 0.24 1 tctcataata cccaccaggc accagctcat ttgattttca ggtccagaat 51 agatctgatt ccttcataat tatttccaaa ataaaaaata aattcaatta 101 actgtccaca tagttatcaa ccatgtatat tacATTGTct tataatgtac 151 ttataccaaa cctctatcTA TATATAtgca cacacaaaca aaccaaaaat 201 ATACAAATCT GAACAAACAT TAAAACTCAT CTCTCTCATC ATCTTTGGCC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L12 (RPL12C) |LOCUS: AT5G60670 |PROD: the same as GENE |complement(24398136..24398819) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.27 C - 0.18 1 cacagacacc tcggtcattg aagcgaaccg aaacaaaaca tccggaatgg 51 cgaaatcaac caattgtgtg tttgtcttat ttgctaaaaa ttattttctt 101 ttaaatatgg ttttgatttc ggtccagggt aaattcgtaa tttgcattta 151 aaccctagtt aaacgcatTA TAAAAAgacg aaaccctaga agctgagagt 201 GAGTGAGTGA GAGAAGAATC AGAGAAAATG CCGCCGAAAT TGGATCCATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.005 +strand -123 : -113 TATTTGCTaAA AC RSP00438 Mean Expected Number 0.010 -strand +35 : +30 GGCGGC AC RSP00642 Mean Expected Number 0.006 -strand -51 : -58 TAAATGCA AC RSP00807 Mean Expected Number 0.010 +strand +30 : +35 GCCGCC Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G60940 |PROD: the same as GENE |24540204..24543038 |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.31 C - 0.18 1 aaaattataa gcgccgctca ggtacgaatt caaattttct ttgagaccgt 51 tacgcacgtg tcatgcacat gatcatcact aaaatatcat aggcccatta 101 ttttatattt cagcccatat tttaatatca aaggcccatt agtttatatt 151 tcagcccata gtTTTAAATA ttggcccatg ttgatctttg tttctgaaga 201 GGAGGAGGAA GAAGACGATG GTTGACACTT GACAGAGTAA GCTCAGAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.009 +strand -139 : -133 CATGCAC AC RSP00049 Mean Expected Number 0.002 +strand -148 : -139 CGCACGTGTC AC RSP00524 Mean Expected Number 0.009 -strand -140 : -146 ACACGTG AC RSP01017 Mean Expected Number 0.008 -strand -6 : -13 AGAAACAA AC RSP01035 Mean Expected Number 0.009 +strand -145 : -139 ACGTGTC Totally 5 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glycine-rich protein |LOCUS: AT5G61660 |PROD: the same as GENE |complement(24796441..24797156) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.32 C - 0.16 1 taggtgctta ttttcagttg ataattatgt ctaagtaaac aattataaaa 51 aaatggtgtt taatcttttt tcctaacaaa atttctttag tttcgagata 101 cgacttaaca aaagggtgtg tctggcccat ctcacactat caaaccaact 151 tgttacggac cgttgttgcc TATAAATGgt ggcagaagct ttcttacaat 201 AACTTCATAA CAAAACAAGA TTTTGAAGTA AAACATAAAA GAAAATAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00756 Mean Expected Number 0.002 +strand -70 : -63 CTCACACT AC RSP00933 Mean Expected Number 0.009 -strand -152 : -164 TTTATAATTgTTT Totally 2 motifs of 2 different REs have been found Description of REs found 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted protein |LOCUS: AT5G61720 |PROD: the same as GENE |24818780..24820395 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.35 C - 0.18 1 atatgtccta actaaattta tcctttctaa aaatatatcc agaaaaaaac 51 gaatagccag agaaatttct tcgaatctcg tttacgattt cttaacaacc 101 ttaaatttat caactatttt attcttgttc attttaaata atagtgaatt 151 taagacgttt caagcatcta TATAAATCca ctcaccatag aaagcaaggt 201 ACAATAAAAA CAATTTCAAC GTTTCGTTTT CCTGTACCTC TTTTAAGAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.002 +strand +16 : +25 TCAACGTtTC AC RSP00940 Mean Expected Number 0.004 -strand -9 : -18 TTCTAtGGTG AC RSP01087 Mean Expected Number 0.002 +strand +32 : +39 CTGTACCT Totally 3 motifs of 3 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: calmodulin-binding family protein |LOCUS: AT5G62070 |PROD: the same as GENE |complement(24947145..24949802) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.29 C - 0.22 1 accacaaagc acagatctgg tacggttggt aggattagtc aggcccattg 51 actttaaccg acgcccttta gataaagtca agctaagcaa aaaataaaaa 101 agccttttaa aatctcgtgt aactaactcg ctgtatgccg gcgcgtggaa 151 acgtactctg caatcTATAT ATAagccgtt aaactctatt tagcttctct 201 ATAGACAAAA GTTTATGTTT TGTTTTTCCT CTAACACAAA AAACAATCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00651 Mean Expected Number 0.000 -strand -167 : -177 tCCTACCAACC AC RSP00727 Mean Expected Number 0.010 -strand -118 : -124 GCTTGAC AC RSP01237 Mean Expected Number 0.009 +strand -38 : -29 aTCTATATAT AC RSP01454 Mean Expected Number 0.004 -strand -171 : -177 ACCAACC AC RSP01621 Mean Expected Number 0.009 -strand +15 : +6 TAaACTTTTG Totally 5 motifs of 5 different REs have been found Description of REs found 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G62080 |PROD: the same as GENE |complement(24950822..24951671) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.27 C - 0.19 1 taaagaataa aataaataaa taaaaaaacc ttgcactcag cgtggtggat 51 agagaacaga gtgatttact ttcacatgta aatcttgtga actaactaga 101 ccatgtgacc atgccaaacg tctcctcaac tcatctaatt aatcactcaa 151 aatatacact caaaacatta TATAAATGat aaatctaaac atatgatatc 201 ATATACATAG AACTACATCA GATATCTATA GAAACAAACT TATCCATGGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.005 -strand -150 : -156 TATCCAC AC RSP00681 Mean Expected Number 0.008 +strand -65 : -57 TAATTAATC Totally 2 motifs of 2 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S20 (RPS20C) |LOCUS: AT5G62300 |PROD: the same as GENE |complement(25038446..25039661) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.35 C - 0.15 1 taacacgttt attcattaca aaaatttatg taattaaatc aaacatggtt 51 tgtatttttt aataaaatga attgttttcc aagtaattgg gtcaaaacac 101 aaaagaaaaa tacagagcaa atatttttgt agttattggg ctgaatATTG 151 Tttgggccca acaagtccaT ATAAATTagg gttttcatat taaatcaacc 201 GTCTCTTAGG TTAAATCATT CGACTCCTTC CTTCCTTGCA GCAAAAAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -25 : -17 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -17 : -25 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 -strand -16 : -25 aAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G62440 |PROD: the same as GENE |complement(25089709..25091215) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.24 C - 0.18 1 gactttaaaa tgaaaagatt taagagacgt aaaaataata attggacaga 51 tcaatgacga caaattagtt actacattga aaatcctggt tttcatgtag 101 tgtatgccgt cgagccaaaa aatcaaatag accgaaccag ttcggttcaa 151 tcggaaacca aagtcaTATA AATAtaccgc ttagacgatt tctgtaggtc 201 ACACACCCTC AAGCTTAAAC CCTAGAAATC GTAGAAAGGT GAAAAAAAGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.009 -strand -137 : -146 tTTGTCGTCA AC RSP00953 Mean Expected Number 0.004 -strand -157 : -165 CAATTATTA AC RSP00969 Mean Expected Number 0.002 +strand -147 : -138 aTGACGACAA AC RSP00985 Mean Expected Number 0.005 +strand -62 : -53 AGTTcGGTTC AC RSP01012 Mean Expected Number 0.008 -strand -2 : -8 ACCTACA AC RSP01725 Mean Expected Number 0.002 +strand -178 : -167 AGAgACGTAAAA Totally 6 motifs of 6 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATEB1B |LOCUS: AT5G62500 |PROD: microtubule-associated EB1 family protein |25109867..25112470 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +288 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.08 T - 0.40 C - 0.17 1 aaaagaaaaa tcaaaactta gtctattaag catcggtcat tatcacaaat 51 gtaatcctaa gcatccgtat ctaataagtt aagagtaatt tatccacaca 101 tagagttttt tttttaaaaa taattattta ttttctttaa gtgtaacgac 151 taataaaata agtTATAATT Aaattaagaa tcaaattctc tctatctttt 201 GCACTTTTTC TTCTTTGTCT ATCTCTCTCT CTCTCTATCT CTAACCTTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.006 -strand -76 : -88 AATTATTTTTAAA AC RSP00241 Mean Expected Number 0.007 +strand -167 : -162 CGGTCA AC RSP00864 Mean Expected Number 0.002 -strand +36 : +28 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +34 : +26 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +30 : +22 AGAGAGAGA AC RSP00961 Mean Expected Number 0.005 -strand +3 : -5 TGCAAAAG Totally 7 motifs of 4 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SRO5 |LOCUS: AT5G62520 |PROD: expressed protein |25115224..25117133 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.35 C - 0.17 1 aagatattta gctgttaaat gtttgtttac gtcttctcca cggagaaaaa 51 gacaagaaac tctgagtttt tgatatttat aaaaattgca aaaccgacgg 101 taacagaaac aaaaggcggt tcttttttcc atatgtgtaa ttatttcctt 151 aagtcatagc TATAAATAtg aacttggacc tcaagttctt ttcctctctc 201 AAGTAACAAA ATACTAATTC AAAAGCTTTA TAAAGTTTCT TTTCTCATTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.001 -strand -85 : -95 CCTTTTGTtTC AC RSP00280 Mean Expected Number 0.004 +strand -164 : -155 TCCACGgAGA AC RSP00355 Mean Expected Number 0.009 +strand -100 : -93 TAACAGAA AC RSP00838 Mean Expected Number 0.006 -strand -101 : -106 CCGTCG AC RSP00863 Mean Expected Number 0.001 -strand -2 : -10 AGAGAGGAA AC RSP01017 Mean Expected Number 0.009 +strand -96 : -89 AGAAACAA AC RSP01167 Mean Expected Number 0.007 -strand -191 : -199 TAAATATCT AC RSP01296 Mean Expected Number 0.008 +strand -41 : -33 CTATAAATA AC RSP01641 Mean Expected Number 0.004 -strand -144 : -153 TCTTGTCTtT AC RSP01720 Mean Expected Number 0.001 -strand -165 : -176 gAAGACGTAAAC Totally 10 motifs of 10 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ubiquitin-conjugating enzyme 3 (UBC3) |LOCUS: AT5G62540 |PROD: the same as GENE |25121160..25122845 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +745 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.42 C - 0.12 1 taagtattaa aatggtgata gcttgctgag tcacgtccgc ttgggccatt 51 ggcccattga gtaatagacg tatacgtttg tcttttacac gaaccgacaa 101 ataaaaaata ataatattaa aATTGTatta aaattataaa agtctttttt 151 cgtctttgga agaaaaTATA TATAtgtttt tttcttctgg caagttttgt 201 ATTTTATTTT CTTAAAATAG TATATGATTT TTTCATTTTA AACTTTCTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00422 Mean Expected Number 0.006 +strand -108 : -103 ACCGAC AC RSP00423 Mean Expected Number 0.008 -strand -164 : -169 GACGTG AC RSP00424 Mean Expected Number 0.008 +strand -169 : -164 CACGTC AC RSP01210 Mean Expected Number 0.010 -strand +20 : +11 CTATTTTAAG Totally 4 motifs of 4 different REs have been found Description of REs found 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: integral membrane HPP family protein |LOCUS: AT5G62720 |PROD: the same as GENE |25209068..25212235 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.37 C - 0.12 1 tattgtaccg tgaaaaaata tataggtaaa attttcaaaa tatttgtgtt 51 gaccaaataa atggcaagat cataatattt tgcataattt tctatatttt 101 aaagccgatt ttcattgcta aaatatATTG Tataagtata tgctaataca 151 catatttgcg tgtgtgtaTA TAAATAaaaa catgcataca tgtatcattt 201 GTCTGTCTCC TATTGGCTAA GAAAACAGAG AGAATCGGTA TTTTTAGCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01687 Mean Expected Number 0.003 -strand -94 : -100 CGGCTTT Totally 1 motifs of 1 different REs have been found Description of REs found 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: band 7 family protein |LOCUS: AT5G62740 |PROD: the same as GENE |25218173..25219982 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +373 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.33 C - 0.15 1 aattattcct gaatctaaaa tagaacaata atgaaattta tcatatttcg 51 tcaagagttc ctggtttttt ttaaccaatt aaaatttata ttgagtatat 101 tgtgtaaata acaaataaac ttaagggtaA CAATtcgaaa tagtcgaaag 151 ctagggaggt ctttcttgta TATAAAACcg tctctgccca ctgaaatatc 201 AACTTAGCTC ATAAGCATAT CTAATCGGAG CTCGGAGAAA TTTCGGTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.006 +strand -56 : -50 CGAAAGC AC RSP01094 Mean Expected Number 0.004 -strand -120 : -131 TAATTGGtTAAA Totally 2 motifs of 2 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: MA3 domain-containing protein |LOCUS: AT5G63190 |PROD: the same as GENE |25362769..25366022 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +602 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.31 C - 0.20 1 tcaaccattg gatattgtcc agcccaaaat atctaattca atgggccgaa 51 cctacccaat acagcccatt gttttggatt aaaatcttta aaaaaattgg 101 aggctaaatt aaaaaaagaa ggaaatattc taagccctcc acgtattacg 151 ttgatgacgt gtaccatcgt aTATAAACAa atgcacaaaa ctttattata 201 TTGTTGTAAA GTAGTACTTT TATTGGCGAT CCTCATCCAT TTCCTCTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.006 +strand +5 : +12 TGTAAAGT AC RSP00863 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGGAA AC RSP00916 Mean Expected Number 0.001 +strand -48 : -39 GATGACGTGT AC RSP00997 Mean Expected Number 0.002 +strand -48 : -39 GATGACGTGT AC RSP01208 Mean Expected Number 0.000 +strand -135 : -124 CCATTGTTTTGG AC RSP01209 Mean Expected Number 0.004 +strand +17 : +26 CTTTTATTGG AC RSP01218 Mean Expected Number 0.000 +strand -135 : -124 CCATTGTTTTGG AC RSP01258 Mean Expected Number 0.002 +strand -46 : -39 TGACGTGT AC RSP01274 Mean Expected Number 0.004 +strand -63 : -54 TCCACGTATT AC RSP01275 Mean Expected Number 0.002 -strand -38 : -47 TaCACGTCAT AC RSP01654 Mean Expected Number 0.004 +strand -48 : -39 GATGACGTGT AC RSP01734 Mean Expected Number 0.010 +strand -63 : -57 TCCACGT Totally 12 motifs of 12 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CYP94B1 |LOCUS: AT5G63450 |PROD: cytochrome P450, putative |complement(25426121..25427799) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.29 C - 0.18 1 gagacaatac taattaaggt aaaccttctt aaatgaaaaa gctttatcgc 51 tcaaaatact aatcaagttt caataaagaa atgaaagaaa gctttattaa 101 ttatgtcgtg ttctgtaccg aagtgatatg gtcggagcca caacttttat 151 tctgttttta ttctccTATA TATAtaatag ttcctctaca gatcaagaac 201 ACAAATCAAA ACAACATAAT TAACTTACCC AAACAAGAAA CCCAAGAATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.007 -strand -91 : -96 CACGAC AC RSP00574 Mean Expected Number 0.005 -strand -47 : -54 CAGAATAA Totally 2 motifs of 2 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G63480 |PROD: the same as GENE |25434491..25436095 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.40 C - 0.11 1 ttgttgttgt tattgtccat tggatctttg ccttgtgatt ggatcaaaag 51 atcaaactaa cgttttagat agtttttgtc atatggattg gagtaatagt 101 ggataaggta gacagcgatg tagctgattt ctttctattt ttatttatct 151 ataaaaacta tattattgaT ATATATAtta tatagtttga ttaaaacgac 201 ATCGTATTAA TAGTTTAGTC AACCGACGCC GTGATAAAGT GTGTTCACGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.006 -strand +25 : +20 CGGTTG AC RSP00422 Mean Expected Number 0.006 +strand +22 : +27 ACCGAC AC RSP00808 Mean Expected Number 0.009 -strand -140 : -146 GTTAGTT AC RSP00860 Mean Expected Number 0.005 -strand -65 : -73 AGAAAGAAA AC RSP00949 Mean Expected Number 0.002 +strand +16 : +23 TAGTCAAC AC RSP01058 Mean Expected Number 0.010 +strand -104 : -97 TAGTGGAT Totally 6 motifs of 6 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC: RSP00810 RSP00812 RSP00813 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AAP4 |LOCUS: AT5G63850 |PROD: amino acid transporter 4, putative (AAP4) |25568281..25570746 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +439 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.28 C - 0.16 1 ggttgtcaat caagaaccgt aatgtttgat ctatagagcc atgggattaa 51 tggatgctaa aagaataaaa cactcgagaa gaagagtaca cgtaaaatca 101 ctcacacaca aagaatgaga gatgggagaa gaatactaca aagtgtttgt 151 tttttttaaa tcggctcata TATAAATTtg ggcgatactc tactacccac 201 ATTATTCTTT TAAACAATGA TATAAATGTG TATGGCCTAT GTAGCCGAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00235 Mean Expected Number 0.001 -strand -151 : -162 TTAATCCcATGG AC RSP00488 Mean Expected Number 0.002 +strand +37 : +46 CTAtGTAGCC AC RSP00881 Mean Expected Number 0.009 +strand -192 : -183 ATCAAgAACC AC RSP01261 Mean Expected Number 0.006 -strand -106 : -113 TTACGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G63905 |PROD: the same as GENE |complement(25588084..25588812) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.35 C - 0.12 1 ttagatttta ctacgtaaac aacagcaaag ttgttgattc aatagcattt 51 tatataaata aataaaaaac tttatttagt agtgcataaa tgataaagca 101 aattttctaa ttagcttttg ttgattaatc gggttaataa ataaatcatt 151 aatgtaaaag attttaaTAT AAAATaagaa tccccaaaaa gagctaaatt 201 ATTCTGCAGA AGACGCGTCT TCTTTCTTCT TCGGTAAACT TCAAATCAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00574 Mean Expected Number 0.008 -strand +6 : -2 CAGAATAA AC RSP00881 Mean Expected Number 0.005 -strand -163 : -172 ATCAACAACt AC RSP01209 Mean Expected Number 0.008 -strand -8 : -17 CTCTTTTTGG Totally 3 motifs of 3 different REs have been found Description of REs found 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G64100 |PROD: the same as GENE |complement(25667867..25669349) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.35 C - 0.22 1 aacatgtata atacatatat gttcaatgga ccgactcatc tacactgtta 51 ttcaaactaa ttattttata aatgattact aaatcagctt attaaattcc 101 cataatttct gcgtcgtgtg ccgaagttgc tcgttACAAT tgttattccc 151 acaacttttt ttgccTATAT ATAcaaaccc tttaacatca aactcaaaac 201 ACACAACAAA CACAACTTCT ACAAGACTCA AATAGTTTCT ATTTAATTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.004 -strand -83 : -88 CACGAC Totally 1 motifs of 1 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G64110 |PROD: the same as GENE |complement(25671571..25673256) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.09 T - 0.30 C - 0.20 1 ttaggcacat acatggacca tatttcatat gcttaattac aatattaaca 51 aaataaatca acaaagaatt aaatatcacg actaaataca acgtagctcc 101 aattagttga tgagtagccc ggcATTGCtt actcattaaa ctctgcgaat 151 cttttactct tttccacTAT AAATAtatat acacacacaa ttctcaaact 201 ATTAAACGCA ACAAATCAAA AGTAATAATC CAAATTATAT ATACATATAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.004 +strand -196 : -187 GCACATACaT AC RSP00104 Mean Expected Number 0.006 -strand -185 : -191 CCATGTA AC RSP00595 Mean Expected Number 0.002 +strand -170 : -162 GCTTAATTA AC RSP00962 Mean Expected Number 0.003 +strand -90 : -84 TGAGTAG Totally 4 motifs of 4 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G64120 |PROD: the same as GENE |complement(25676532..25678228) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.27 C - 0.30 1 agaaaatgct tttaaagtca accagtcgac cagctcacaa cgcactgacc 51 aacaccacgc gcttttgaat ctcccacaaa cggtgtcgtt tttcatctat 101 cccccacaaa caccaaagcc ggttttgttg actcacacgt cattctttga 151 ctaatcaatc tcctcTATAA ATAgtactct ataacgaact aactctactc 201 ACTATAACTT AAACACACAC TTCATCTTCT CTAAAACCCT AAAATTTAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.006 +strand -67 : -60 CACACGTC AC RSP00120 Mean Expected Number 0.000 -strand -110 : -123 AAACGACACCGTTT AC RSP00234 Mean Expected Number 0.001 +strand -193 : -184 GCTTTTAAAG AC RSP00279 Mean Expected Number 0.007 -strand +42 : +34 TTAGGGTTT AC RSP00369 Mean Expected Number 0.007 +strand +34 : +42 AAACCCTAA AC RSP00997 Mean Expected Number 0.010 -strand +26 : +17 GATGAAGTGT AC RSP01258 Mean Expected Number 0.006 -strand -59 : -66 TGACGTGT AC RSP01296 Mean Expected Number 0.006 +strand -36 : -28 CTATAAATA AC RSP01476 Mean Expected Number 0.005 +strand -190 : -183 TTTAAAGT AC RSP01687 Mean Expected Number 0.007 -strand -80 : -86 CGGCTTT AC RSP01708 Mean Expected Number 0.008 +strand -36 : -27 CTATAAATAG AC RSP01708 Mean Expected Number 0.008 -strand -27 : -36 CTATTTATAG Totally 12 motifs of 11 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RPS28 |LOCUS: AT5G64140 |PROD: 40S ribosomal protein S28 (RPS28C) |complement(25684550..25685518) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +569 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.35 C - 0.19 1 atttcaatgg acttaaaaag cccatatgtt atctaaagta tgggcttttt 51 ctcttaaaag gaccatactc aaaagcccat atttgtattt catactaact 101 ctcaaaagta taaaatataa atatgggctt aaaaATTGAc gttagcttct 151 taagtgtggc ccatttagag taTATAAACA ccaataaatc catcgctcag 201 TTTTCCGATT CTAGGGTTTT TCTTTGGCAA ACTCGATTTC GCCTAGCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01621 Mean Expected Number 0.007 -strand -89 : -98 TAtACTTTTG Totally 1 motifs of 1 different REs have been found Description of REs found 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: MSJ1.10 |LOCUS: AT5G64260 |PROD: phosphate-responsive protein, putative |25721155..25722542 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.09 T - 0.29 C - 0.31 1 taatacacgt tatgaagact taaaccacgt cacactataa gaaccttaca 51 ggctgtcaaa cacccttccc tacccactca catctctcca cgtggcaatc 101 tttgatATTG Acaccttagc cactacagct gtcacactcc tctctcggtt 151 tcaaaacaac atctctggTA TAAATAcctc tgtatatctt tataaacccc 201 AAATCAAAAC CTCTCCTATA TCTCTTCAAT CTGATATAAC TACCCTTCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -114 : -105 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -105 : -114 GCCACGTGGa AC RSP00153 Mean Expected Number 0.002 +strand -113 : -104 CCACGTGGCa AC RSP00175 Mean Expected Number 0.000 +strand -112 : -105 CACGTGGC AC RSP00189 Mean Expected Number 0.003 +strand -114 : -105 TCCACGTgGC AC RSP00214 Mean Expected Number 0.006 -strand -169 : -176 TGACGTGG AC RSP00215 Mean Expected Number 0.006 +strand -176 : -169 CCACGTCA AC RSP00304 Mean Expected Number 0.007 -strand -67 : -74 TGACAGCT AC RSP00340 Mean Expected Number 0.006 +strand -114 : -105 TCCACGTGgC AC RSP00421 Mean Expected Number 0.005 -strand -52 : -58 ACCGAGA AC RSP00682 Mean Expected Number 0.001 -strand -105 : -114 GCCACGTGGA AC RSP00683 Mean Expected Number 0.006 -strand -105 : -114 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.000 +strand -113 : -106 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -106 : -113 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -114 : -105 TCCACGTGGC AC RSP00938 Mean Expected Number 0.000 -strand -104 : -115 TGCCACGTGGAg AC RSP01019 Mean Expected Number 0.005 +strand -189 : -183 ATGAAGA AC RSP01034 Mean Expected Number 0.001 +strand -111 : -105 ACGTGGC AC RSP01139 Mean Expected Number 0.002 -strand -171 : -179 ACGTGGTTT AC RSP01662 Mean Expected Number 0.001 -strand -167 : -178 TGTGACGTGgTT Totally 20 motifs of 18 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1480. Group TF: HY5 /AC: RSP01662//OS: Arabidopsis thaliana /GENE: ARR8 (At2g41310)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AGP1 |LOCUS: AT5G64310 |PROD: arabinogalactan-protein (AGP1) |25739159..25739872 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.28 C - 0.27 1 cgttagcgcc gtagtcaaag ggtttaagcc caaccgcgtt tctctttttc 51 acctctttct tttgtagcat aatatctcag ccgttagatt taagtcggtc 101 cttacttttt catatcaacg gtcacgattc actaaacacc TCAATacagt 151 gtaccccact tcttctctct aTATAAAGAa caccatctcc taggtttcgt 201 TAACAACAAC AACAAAGCAA AAACACTCCC AAACCAAAAA AAGAAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.006 +strand +11 : +20 AaCAAAGCAA AC RSP00996 Mean Expected Number 0.009 -strand -82 : -91 GTTGATaTGA AC RSP01209 Mean Expected Number 0.001 -strand +43 : +34 CTTTTTTTGG Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATOPT4 |LOCUS: AT5G64410 |PROD: oligopeptide transporter OPT family protein |complement(25768071..25772277) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.37 C - 0.19 1 ttcattttgg ccactagtca ctactaatag caaaataata acaaagtttc 51 attggttcaa acatcatatc ttcatatagt tgactcatta gattccaatc 101 aACAATtata tcaaaataat ctaaaaacaa tttctcttta ttaaaaatga 151 aaacaaatct tgattagTAT AAAAAtagag atatggttct tgtcagtctc 201 ACATAAAGAT TCCTAGTCTT ATACTCTGTC TCTCTCTCTC TCTCTCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 +strand -191 : -182 GCCACTaGTC AC RSP00441 Mean Expected Number 0.006 +strand -161 : -152 AACAAAGTtT AC RSP00792 Mean Expected Number 0.006 +strand -106 : -97 CCAAtCAACA AC RSP00864 Mean Expected Number 0.002 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +37 : +29 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +46 : +30 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +44 : +28 GAGAGAGAGAGAGAGAc AC RSP01640 Mean Expected Number 0.006 +strand +24 : +33 CTcTGTCTCT Totally 12 motifs of 6 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: C/VIF2 |LOCUS: AT5G64620 |PROD: |25849060..25849728 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.34 C - 0.20 1 ccaacaattt gcatcatgtg aatttaaatc ttgataggtc aatattagta 51 taaactacca cactacatgc gaaaatcatt cctcatttag tgcaattaca 101 aatgataaac ggaaacgtta tcatttgtat ttattttgta aaatatgtaa 151 ttcaagaaac tgctcagaaT ATAAAGAcaa gaatcctctt tcttccatct 201 CTATCTCTCC GTAAACAGTT GCTCAAAACC TTCTTCCTGA AATGGCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.009 +strand -52 : -45 AATTCAAG AC RSP00998 Mean Expected Number 0.001 +strand -88 : -75 AAACgTTATCATTT AC RSP01007 Mean Expected Number 0.005 -strand -162 : -168 ACCTATC AC RSP01641 Mean Expected Number 0.003 -strand -19 : -28 TCTTGTCTtT AC RSP01761 Mean Expected Number 0.001 +strand +24 : +35 CaAAACCTTCTT Totally 5 motifs of 5 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5 932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64900 |PROD: the same as GENE |25954396..25955302 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.29 C - 0.19 1 cttgattatt ttttgtcaac taattaatca aagaatcaga aaatggacta 51 gttattctta ttcaaaagtc acgatttatg aattcaccaa aaaataaaaa 101 agagtcaaga tttatgaaaa tgtattttat agtaataaag agtcacaccc 151 aataccgagt tagcccacTA TAAAAGgcaa agatgtctct ctgcgcaatc 201 ACTCACATAT AAAAAACAGC TTCACTCCTC TCACCAAAAC TAATCAGATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.009 +strand -180 : -172 TAATTAATC Totally 1 motifs of 1 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: senescence-associated protein-related |LOCUS: AT5G65040 |PROD: the same as GENE |complement(25994847..25995643) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.38 C - 0.18 1 tacgcaatct cggattaaat gattgtctta actcttaatc tatttacagg 51 gttacaccaa tatgattacc ttatatataa aaaagaaaaa gaattataat 101 tactaactaa agaagattat aaaaataaaA CAATattatc tctataatta 151 gattctccca ttctttttcT TTAAATAact ttgttcttct tctcttcttc 201 CTCCCCTTTA CTACACACTT CTTCTTTTTT CTTCAGAAAG AAAGAAAGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand +34 : +47 cAGAAAGAAAGAAA AC RSP00444 Mean Expected Number 0.000 +strand +38 : +51 AAGAAAGAAAGAcA AC RSP00445 Mean Expected Number 0.009 +strand -122 : -113 AAAAAAGAaA AC RSP00860 Mean Expected Number 0.001 +strand +35 : +43 AGAAAGAAA AC RSP00860 Mean Expected Number 0.001 +strand +39 : +47 AGAAAGAAA Totally 5 motifs of 3 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CYCD4;1 |LOCUS: AT5G65420 |PROD: cyclin, putative |complement(26158699..26161219) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +243 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.36 G - 0.02 T - 0.35 C - 0.26 1 taaaaactaa aatacaacga ataaaaccaa ctaacttttc aattctcacc 51 tcaatttcct accacatttt cataattttc caacttctca catttgttac 101 catgatagTC AATtcacttt ctaaaatctt caaattttat cttacatttt 151 tcatcttctt caccatTATA TATAgcctct ctccttctca cacaatctcc 201 ATCTTACCCT AAAAACCACA TTTCTTAACT TCCTCAATAA AAAAAAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.000 +strand -105 : -97 GTTACCATG AC RSP00445 Mean Expected Number 0.002 +strand +41 : +50 AAAAAAGAAA AC RSP00920 Mean Expected Number 0.006 -strand -162 : -173 AAAAGTTAGTTg AC RSP01335 Mean Expected Number 0.000 -strand -96 : -109 TCATGGTAACAAaT AC RSP01469 Mean Expected Number 0.002 +strand -113 : -104 TCACATtTGT Totally 5 motifs of 5 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 1220. Group TF: BGTF /AC: RSP01335//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Site1, wild) /TF: BGTF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT5G65640 |PROD: the same as GENE |26254285..26256310 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.32 C - 0.21 1 taggctacag caaacaaaaa tgtttttatt atttgtcacg agaaaacaat 51 aaaatgtgtt atcaaactaa ataaaaacca tatattatac taatcacaaa 101 ttaaacggga atcttttatt taattaatag tatactctct cacacagaca 151 gacatctctg gatttataTA TAAATAcagt tcatcttctt taatccacaa 201 ACTCACACAC ACACACACAC ACTCTGTTTT CTTCGTCCAT TCTATTACCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00131 Mean Expected Number 0.007 -strand -141 : -147 AACACAT AC RSP01527 Mean Expected Number 0.005 +strand -7 : +5 TCcACAAACTCA Totally 2 motifs of 2 different REs have been found Description of REs found 129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT5G65660 |PROD: the same as GENE |complement(26262475..26263605) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.34 C - 0.21 1 taatgggaat aaaaatttca acggcgaaaa gaaaagggac aactttattg 51 tacagcatat ttgctttatg tgtactgcga aaataacttt ttcacagttg 101 taaaataaaa acattttaat atctcatttt tttgatttca caacaaaaac 151 aataaaataa aaatctttTA TAAATAaaca ctccctatct cttcttgttt 201 CCCCGTCCCC TGTTCTCACC AAACTCTCAA AGCTCTCTTC TCTTCTCTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.008 -strand -34 : -45 AAgATTTTTATT AC RSP00254 Mean Expected Number 0.004 -strand -164 : -170 CCTTTTC AC RSP01499 Mean Expected Number 0.005 +strand -2 : +8 TTCCCCGTCc Totally 3 motifs of 3 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: xyloglucan:xyloglucosyl transferase |LOCUS: AT5G65730 |PROD: the same as GENE |26316263..26317704 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.20 1 ttcattggca tcaaatttag gtaattttta gaatatagct taataaatga 51 gtaggccaag aggacggctc gcaattagct gtgtggaaag ctaaacgatg 101 tctcctaccg tccacgtcag cgtcttaaat cctcaaatcc cATTGGcaac 151 aaaaaaaaca ttgtgtaTAT AAATAcatgc atacttatca ctctctactc 201 ACTTTTACAA CTAACTCATA AGTAAAACAC AGACAGTTTT TAGATGGCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.009 -strand +9 : +2 TGTAAAAG AC RSP00214 Mean Expected Number 0.002 -strand -82 : -89 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -89 : -82 CCACGTCA AC RSP00248 Mean Expected Number 0.002 +strand -90 : -81 tCCACGTCAG AC RSP00683 Mean Expected Number 0.003 +strand -146 : -137 GCCAAGaGGA AC RSP00870 Mean Expected Number 0.001 -strand +9 : -1 TGTAAAAGTG AC RSP00960 Mean Expected Number 0.009 +strand +8 : +15 CAACTAAC AC RSP00962 Mean Expected Number 0.010 +strand -153 : -147 TGAGTAG AC RSP01275 Mean Expected Number 0.004 +strand -90 : -81 TCCACGTCAg AC RSP01734 Mean Expected Number 0.009 +strand -90 : -84 TCCACGT Totally 10 motifs of 10 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G66690 |PROD: the same as GENE |26642306..26644019 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.43 G - 0.07 T - 0.34 C - 0.15 1 tttgtctcaa tacttaaatt tgcctaaaat acaaggtaag aatattagat 51 tacatataca gtataattac tttatttcat tgtttgtctt tcaaataata 101 tacaactatt aaactACAAT ttatagtcta tatcaatatt tttatttata 151 aatgttataa atctgccTAT AAATAagtaa gtaacccata tacaacgacc 201 ATAGAAACAC ATCATTAACA AAACAAAGCC TCTCTAAATA AAAACAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.002 +strand -66 : -55 AATATTTTTATT AC RSP00135 Mean Expected Number 0.009 +strand -66 : -55 AATATTTTTATt AC RSP00885 Mean Expected Number 0.000 +strand +22 : +34 AACAAAGCCTCTC Totally 3 motifs of 3 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 818. Group RE: AACA motif /AC: RSP00885//OS: Zea mays /GENE: gamma-27kDa zein/RE: AACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G66815 |PROD: the same as GENE |26694591..26695091 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.37 C - 0.18 1 cgtaattgaa ttttttgatt ccattatttt gcatgttttc ttgcactagt 51 cattgtattt taatttttaa atagaatata acagcatgcc acctactttg 101 taataatcat aataaacaaa ctcgacttta ataattagct agtttatttg 151 aaataagcag gtacaatctc taTATAAATG cccccataga agcaagtgtt 201 ACTTCACATC ACCACTCTCA AATATTCTCA AGAGTCCTTA ACAACGATAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.002 -strand -104 : -113 AGTAgGTGGC AC RSP00107 Mean Expected Number 0.009 -strand -166 : -172 CATGCAA AC RSP01250 Mean Expected Number 0.003 -strand -187 : -196 AAAATTCAAT AC RSP01458 Mean Expected Number 0.008 -strand -129 : -141 ATTTAAAAATTaA Totally 4 motifs of 4 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FAD-dependent oxidoreductase family protein |LOCUS: AT5G67290 |PROD: the same as GENE |complement(26865374..26866995) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.27 C - 0.20 1 agaatcagaa aactattcat tgaaattcat acagagaata tcagttatca 51 cttatcagct actaaatatc ataggaaaca cagtaacaca caatagcgta 101 gagattatAC AATaaatggg cttcaaaaga tcagcccaaa aagaaactaa 151 gcccAATAAA TAatttctaa ctaacgtgtg gactcggtga gtcatcatct 201 ATCTCATCTC GGTGATGGCG GTGATCTCAT CGTTATTATT CCCTCCGGTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.005 -strand +13 : +7 ACCGAGA AC RSP00430 Mean Expected Number 0.001 +strand -14 : -6 GTGAGTCAT AC RSP00750 Mean Expected Number 0.004 -strand -86 : -97 TTATTGTAtAAT AC RSP00871 Mean Expected Number 0.003 +strand -15 : -6 GGTGAGTCAT AC RSP01127 Mean Expected Number 0.008 +strand -120 : -103 CAGT-- ** bp --AGCG Totally 5 motifs of 5 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 410. Group TF: BLZ1 /AC: RSP00430//OS: Hordeum vulgare /GENE: Hor2 gene/RE: GSN; hor1-box; /TF: BLZ1 ||Identical REs AC: RSP00883 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G67390 |PROD: the same as GENE |complement(26904896..26906464) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +726 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.41 C - 0.16 1 acactcttgt tttatttggg ctttgagtta gtttgcaaca atcactctgg 51 ttcttgtgat atgtgagaga gagattaatt aattgttaaa caaatgatta 101 cttaaacctt gtttttataa tcattaaatt tgtgaacttt ctttttaaat 151 aatttttctg cagTATATAT Aactatgaag aatgtgacgc accaatccat 201 ATCTCTTCTC TAAGCTCATC ATAATCATCT GCTTCTCAAG CTCATTATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.010 +strand -76 : -66 TaAATTTGTGA AC RSP00681 Mean Expected Number 0.007 -strand -120 : -128 TAATTAATC AC RSP00864 Mean Expected Number 0.000 +strand -135 : -127 AGAGAGAGA AC RSP01195 Mean Expected Number 0.003 +strand -53 : -41 AATAaTTTTTCTG Totally 4 motifs of 4 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G67490 |PROD: the same as GENE |complement(26951379..26952178) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +258 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.30 C - 0.21 1 tctcgtggta gacgaaaata aatagcgaag ccaatactat ataacagcct 51 gtgacttttc tttagtgact aaccactcac agccgttgat gtggcacaaa 101 aaaacacatg acgctttatg agataatcga atcgcttttt ggtaatgagg 151 tctaataTAT AAAAAggtta cgggttcgaa atcagcccac gtcaacttta 201 CCCTCTAATT CTCTCCTATT TGTTTTATAA ACATGTTAGG CCTAGCTCCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.002 -strand -7 : -14 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -14 : -7 CCACGTCA AC RSP00915 Mean Expected Number 0.002 +strand -116 : -107 GTTGATGTGG AC RSP00917 Mean Expected Number 0.004 -strand -5 : -14 GTTGACGTGG Totally 4 motifs of 4 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L26 (RPL26B) |LOCUS: AT5G67510 |PROD: the same as GENE |complement(26955039..26955677) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.27 C - 0.25 1 gacaacaatc taataagccc attatatttc tcaaggttag attggtccat 51 tttaatggtt tgaaagccca tataaaactt atcaaagccc atctgaccca 101 gaaaccttca aaaccctaat tctcactgtg agaaacggca gcgtttaagt 151 aacttttaat atctcataTA TAAACTcatg cacacaacgc tccacctctt 201 CAGCACAAAA AAACCCTAAT TTCTTCACAA ATTCAGCGGC GATGAAGTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.001 -strand +35 : +25 TGAATTTGTGA AC RSP00230 Mean Expected Number 0.002 -strand -158 : -167 AAtCTAACCT AC RSP00279 Mean Expected Number 0.006 -strand +19 : +11 TTAGGGTTT AC RSP00279 Mean Expected Number 0.006 -strand -82 : -90 TTAGGGTTT AC RSP00369 Mean Expected Number 0.006 +strand -90 : -82 AAACCCTAA AC RSP00369 Mean Expected Number 0.006 +strand +11 : +19 AAACCCTAA AC RSP00892 Mean Expected Number 0.004 +strand -45 : -37 TTAATATCT AC RSP01772 Mean Expected Number 0.010 +strand -149 : -143 TTAATGG Totally 8 motifs of 6 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATARLA1D |LOCUS: AT5G67560 |PROD: ADP-ribosylation factor, putative |26967580..26969410 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +225 bp |Taxon: Dicot |Promoter: TATA Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.36 C - 0.22 1 tcccatcgaa tcttttttct gagtggctag ttttttgttt tttctttaat 51 aataactaca atacatagca aagctccatt attttcgctc tgtcagacac 101 agcttcagtt tccctacaaa acgaattata atcagatcta gaccgttaat 151 ctcacgacct aCATAAATAt agacggttca gatttactga gccattttgt 201 AACTTTAATT CGCCGGCTCT CTTGCCGTGT TTTCGATTTT GACAAACGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01150 Mean Expected Number 0.000 +strand -77 : -67 AATTATAATCA AC RSP01195 Mean Expected Number 0.002 +strand -192 : -180 AATcTTTTTTCTG Totally 2 motifs of 2 different REs have been found Description of REs found 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 33 kDa ribonucleoprotein, chloroplast |LOCUS: AT1G01080 |PROD: the same as GENE |complement(45296..47019) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +230 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.34 C - 0.14 1 cctctgaggg agttcaaaca tagcagattc tatcactacc accttccctc 51 agagccaagg agttgtagat gtagtggtca gaatgaagat tgaggatgaa 101 tgggccatta gacaagATTG Cactggttct aatttcatgg ctcctacttt 151 ctttgtaatt aaagtgtttg gtaaagggaa taagagactt gaagaaatga 201 AAATGTTTGA ATAATTTTTT ATTTTTTGAT TTATAACTTT GGGCCTTTTG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NC domain-containing protein-related |LOCUS: AT1G01225 |PROD: the same as GENE |95987..97407 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.28 C - 0.24 1 ggaatcaagg tcaaaaggcc ccggaaaatc agtacgttgg tagcatttgg 51 atttggagat aacgccgtta aaagactctg taacgggttt gctcaacagc 101 tctctctagt tcgtttatcg aattagataa tgccactcca aaaaacgtta 151 ctttacctta cctatctcgc tgacgtcaga tcccaccgtt agagcttaca 201 CTTGTAACGC CGTTTCCTGC ATTTTCCACA AGCAAGGTAA AAAAAAGCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.007 -strand -59 : -66 TTTGGAGT AC RSP00680 Mean Expected Number 0.008 -strand -118 : -127 TtACAGAGTC AC RSP01056 Mean Expected Number 0.002 +strand -57 : -47 AAcGTTACTTT AC RSP01094 Mean Expected Number 0.002 -strand -76 : -87 TAATTcGATAAA Totally 4 motifs of 4 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: aspartyl protease family protein |LOCUS: AT1G01300 |PROD: the same as GENE |116943..118764 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.33 C - 0.16 1 tcacttttca caaaataatt atagttaaaa taagcaaatt atttcatgac 51 gtaaaaaaag aaagaaaaag aagctaccac accacttgca tatttcttaa 101 gtgtctgtta tccaccgaat ctaaaatgtc gcttttgcat tcccACAATc 151 ttattagata tttgtattcc cagagtaaaa gtataattca aacatttatt 201 ATTATTATTA TAGGAATTGA AAGAAAATTA AATTTTCAAA AAGACCGCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.003 +strand -154 : -147 TGACGTAA AC RSP00130 Mean Expected Number 0.000 -strand +12 : -8 tATAATAATAATAATAAATg AC RSP00444 Mean Expected Number 0.000 +strand -147 : -134 AAaAAAGAAAGAAA AC RSP00522 Mean Expected Number 0.004 +strand -119 : -113 CCACTTG AC RSP00860 Mean Expected Number 0.005 +strand -142 : -134 AGAAAGAAA AC RSP00961 Mean Expected Number 0.003 -strand -62 : -69 TGCAAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: HTR12 |LOCUS: AT1G01370 |PROD: centromeric histone H3 HTR12 (HTR12) |143564..145684 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.27 C - 0.18 1 gtaaaacaca caaaacctat tcccctctgt ttccaatttt catctaaaca 51 aacaggtaca tatttgaatg taatattgta tacagaccag gggtaaaaca 101 ggaactaaag aaggctaACA ATcgagtcga accctctatg tgaagccaca 151 ggtttagtgc aaattgtaat aagttgttca gagagactct tgactgaaac 201 AAATTGTGAA GCAGATTCGA TTTTAAAATC AAAATTTGAG TGTCGAGCGG 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SEC14 cytosolic factor |LOCUS: AT1G01630 |PROD: the same as GENE |229057..230917 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.24 T - 0.25 C - 0.20 1 ggcctctgaa tcagtcaaca ctttgaggca tgagagattg attaaaccac 51 agaccaagtc tttacgacaa atcaactcga gcccaatagg ctctaataag 101 gcCCAATacg atataatcgt cttcttcctg tagagtcggg gacctgggat 151 tagtcaataa atgagtagaa tttttgtaag gaagagagta gttggtgagc 201 GTCGCCATTG AAGGGGAAAG CAGCCCAACT TTGCATTGAA TGACACTTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.005 +strand +26 : +35 cAACTTTGCA AC RSP00711 Mean Expected Number 0.000 -strand -1 : -12 gCTCACCAACTA Totally 2 motifs of 2 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 677. Group RE: Box 1 homolog /AC: RSP00711//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATAF1 |LOCUS: AT1G01720 |PROD: no apical meristem (NAM) family protein |268330..269819 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.25 C - 0.29 1 gagtggaccc ccagaaacga cagacgtaag caatgacaac atcaaactca 51 tcgccacgtc agcaacggag ttctacttgc gaaacgtgtc ccggcagcgt 101 catccaccca cgtgtgttct agaagctctt ctcctcctcc gtatctcgac 151 acgtgtccac tccctctcct tatataattg acttttctct cattctttcc 201 AAGTTTCAAA AACGCCAAGT TTCAGAGGTA GAGAGAGAGA TACTACAATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.001 -strand -140 : -148 TGACGTGGC AC RSP00143 Mean Expected Number 0.004 +strand -53 : -44 GACaCGTGTC AC RSP00143 Mean Expected Number 0.007 -strand -44 : -53 GACaCGTGTC AC RSP00204 Mean Expected Number 0.003 +strand -53 : -44 GACACGTGtC AC RSP00204 Mean Expected Number 0.004 -strand -44 : -53 GACACGTGtC AC RSP00208 Mean Expected Number 0.000 +strand -148 : -137 GCCACGTCAGCa AC RSP00214 Mean Expected Number 0.006 -strand -140 : -147 TGACGTGG AC RSP00215 Mean Expected Number 0.006 +strand -147 : -140 CCACGTCA AC RSP00247 Mean Expected Number 0.006 +strand -148 : -139 GCCACGTcAG AC RSP00248 Mean Expected Number 0.007 +strand -148 : -139 GCCACGTCAG AC RSP00864 Mean Expected Number 0.000 +strand +30 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +32 : +40 AGAGAGAGA AC RSP01106 Mean Expected Number 0.001 +strand -150 : -140 tCGCCACGTCA AC RSP01250 Mean Expected Number 0.007 -strand -15 : -24 AAAAgTCAAT AC RSP01255 Mean Expected Number 0.004 -strand -86 : -93 ACACGTGG AC RSP01256 Mean Expected Number 0.003 +strand -52 : -45 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -45 : -52 ACACGTGT AC RSP01280 Mean Expected Number 0.002 -strand -138 : -148 GCTGACGTGGC Totally 18 motifs of 14 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G01725 |PROD: the same as GENE |complement(269794..270775) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.25 C - 0.20 1 ccgaaagaga tcgccataaa tcaacgcagc ggggatctta aaaacgacgc 51 cgtgaggact tgatgagatg tttgggcctt tctgggccca tatttgaagt 101 gaacgaaaac ggcatgaatt ttcttacaca aatcggATTG Tgtgtcgttt 151 taccaataaa aaaacgtata acatcatcat tgtgtcactt gaaaaaaacc 201 AAAATCACCG GAATTGTTCT TTCTGGGAAC GAAAACATCG ATGAATCCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01214 Mean Expected Number 0.002 +strand -124 : -115 CCTTTCTGGG AC RSP01644 Mean Expected Number 0.000 -strand -73 : -85 TgTAAGAAAATTC Totally 2 motifs of 2 different REs have been found Description of REs found 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1464. Group TF: WRAF1; WRAF2 /AC: RSP01644//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np5-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: actin-depolymerizing factor, putative |LOCUS: AT1G01750 |PROD: the same as GENE |275366..276310 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +162 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.25 C - 0.17 1 caattgtgag gaaagaaaaa gtcaaaaaaa ttgaaataaa aagaaagaaa 51 acatgtacat catgaaacct caactcccca atgatgtccg gaacaaactt 101 caccacatgt gcttgcatat acacatagat acatgtgtat tatgcgaatg 151 cgtgaataac tgaatataat atagactcac tctaatatat ctaatgaagt 201 AAATATGGCA ACAACGTGAC AGCATCTAAG TCTTCTTGGT TTTAAGACGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00358 Mean Expected Number 0.002 +strand -130 : -123 CAACTCCC AC RSP01103 Mean Expected Number 0.009 +strand -136 : -129 AAACCTCA Totally 2 motifs of 2 different REs have been found Description of REs found 343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G01820 |PROD: the same as GENE |complement(296001..298109) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +386 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.33 C - 0.18 1 atattttaac tttttttttt taggtctatc ttgttgctag gaaacataat 51 aataacacac acacacacac acacaaaaaa aagaacgata gagatattta 101 gtgataattt tgttgggtca acgtaatcaa cggtcagaaa tagatcacgg 151 tgcgttcgtc tggcggcttc atttggcaca aggagtttac tagtctggac 201 AATATGTCCT TAATTGCTCT TATCGGAGAA GGCTTACTCT GTTTTTCAGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 -strand -186 : -197 AAAAAGTtAAAA AC RSP00030 Mean Expected Number 0.003 -strand -33 : -39 AGCCGCC AC RSP00741 Mean Expected Number 0.002 -strand -186 : -197 AAAAaGTTAAAA AC RSP00792 Mean Expected Number 0.007 -strand -160 : -169 CCtAGCAACA AC RSP01014 Mean Expected Number 0.010 -strand -26 : -35 CAAATGAAGc AC RSP01167 Mean Expected Number 0.005 -strand -101 : -109 TAAATATCT Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger protein-related |LOCUS: AT1G01930 |PROD: the same as GENE |complement(319836..322860) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.35 C - 0.21 1 gagcagagag gctttcttct atatttattt tctcagtcgc gtctaggatg 51 cttttggcgc ttttgttcgt tcgagatctt tctgcatcgc cgccttgtat 101 tATTGGgcct tatatgggcc actttaatga cattatggat ccatttaaga 151 aaataacaaa acggaatcgt ttatctcaca aagctttcaa atccacactt 201 ATCGGTATCG GTACCGGTGT TAGGAAAATC AATCCGTCCA ATTCATAATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.004 -strand -46 : -56 TATTTtCTTAA Totally 1 motifs of 1 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GAE2 |LOCUS: AT1G02000 |PROD: NAD-dependent epimerase/dehydratase family protein |345812..347592 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +240 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.27 C - 0.14 1 gtaaaaagag agtcaactaa ctaattaatg gttagatctc tctctacttc 51 cccttgattt gttacagttt actctcttct taaccatttt tgaaatttga 101 aaagaaattt tttgATTGGa cattttttct tttaaaaaaa gaaataataa 151 gattgttgat gtagccatag aaaccgggag gcacaaaaaa cggcaaccaa 201 AGAAAGGAAA GGAAAGAAAG AAAACAAAAG GAGTCCAAGA AACCAGAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 -strand -171 : -180 CATTAATTAG AC RSP00444 Mean Expected Number 0.001 +strand +10 : +23 AgGAAAGAAAGAAA AC RSP00628 Mean Expected Number 0.007 -strand -44 : -51 AACAATCT AC RSP00862 Mean Expected Number 0.006 +strand +1 : +9 AGAAAGGAA AC RSP00864 Mean Expected Number 0.000 -strand -156 : -164 AGAGAGAGA AC RSP00880 Mean Expected Number 0.003 +strand -13 : -4 aAACGGCAAC AC RSP00881 Mean Expected Number 0.005 -strand -41 : -50 ATCAACAAtC AC RSP00960 Mean Expected Number 0.006 +strand -187 : -180 CAACTAAC Totally 8 motifs of 8 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: mago nashi family protein, similar to Mago Nashi |LOCUS: AT1G02140 |PROD: the same as GENE |complement(403195..404439) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.26 T - 0.21 C - 0.20 1 aatccgtcgg catcgtctct gtatcgggga atcggaaatc aggcagcccg 51 gatacacaca caatttcgat ggaaacagaa aaactaaaac tgggccttaa 101 cttttcgggt tacaaatggg ttctggcCCA ATatgtaagc ccattacctt 151 ttttcttttg cggggacgga cttaaagaag ggcaaaggac acggagaggt 201 AATCTCGATC TCGAGAAAGA AAGAAAAAAA GAGAAGGCAT GGCCGCGGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand +13 : +26 gAGAAAGAAAGAAA AC RSP00445 Mean Expected Number 0.002 +strand +25 : +34 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.007 +strand +14 : +22 AGAAAGAAA AC RSP00860 Mean Expected Number 0.007 +strand +18 : +26 AGAAAGAAA AC RSP01497 Mean Expected Number 0.005 -strand -190 : -199 GCCGaCGGAT Totally 5 motifs of 4 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G02470 |PROD: the same as GENE |complement(511765..513611) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.29 C - 0.21 1 aacaaaacca aacaagaaac aaagtcacgg caaagagagc ttttctcttt 51 ccaatgttaa cttatttgtc taaacacgac aacacacttt gcgtggagtg 101 tcctaacaca ttcaagagaa tgggtgctga aaagtctctg ttcctaactt 151 gtctctttgg aaaaacaagg ttacatctta aatctttgaa cactcatttt 201 GATCAACTCT AAATCTCTTT CTCTCAAGAT CAAAAGAGAT GTCATCAATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.010 -strand -75 : -80 CACCCA AC RSP00404 Mean Expected Number 0.008 +strand -113 : -107 TTTGCGT AC RSP00460 Mean Expected Number 0.005 +strand +36 : +45 GAgATGTCAT AC RSP00716 Mean Expected Number 0.004 +strand -198 : -190 CAAAACCAA AC RSP00861 Mean Expected Number 0.001 -strand +22 : +14 AGAAAGAGA AC RSP00889 Mean Expected Number 0.002 -strand -105 : -111 CCACGCA AC RSP01641 Mean Expected Number 0.004 +strand -54 : -45 aCTTGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLPP5 |LOCUS: AT1G02560 |PROD: |537888..540109 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.25 C - 0.24 1 gaacagatat ttattgttta atgctttaat tctaaaattt cctctttgaa 51 aacaacacgt gacaatcgcg ttttgtaagt accgaaaggc gttagcgtgt 101 aatataatcg gacctaaaat tgacccgtcC CAATcctaaa ttaacgggtt 151 caaaacccga cccgataaca cacacacaga tatcaccacc attagtctca 201 CTTCGAAGAA GCAAAACAAA ATCCCCAAAT TTTCAACAAG GATAAGAGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.010 +strand -146 : -140 ACACGTG AC RSP00734 Mean Expected Number 0.001 -strand -126 : -133 CAAAACGC AC RSP00978 Mean Expected Number 0.003 -strand -138 : -147 GTCACGTGTT AC RSP01167 Mean Expected Number 0.003 -strand -188 : -196 TAAATATCT AC RSP01600 Mean Expected Number 0.007 -strand -150 : -157 TTTCAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G02813 |PROD: the same as GENE |620678..621289 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.27 C - 0.25 1 gcgataaatt aagaatttaa taaagattat ttaacatcat gtatcattaa 51 acgacgtcga tggtccactc tttaacacgt gagcattaag ctcatcaaat 101 ctcagccgtt cattcctttc acggaccgat cacagcgtca ctaaacccca 151 actaatccct catcgttctc tacttataac taaacacaca aagacatccc 201 AAAACCAACT TCTTAAACAG ATTCAAGGAA AATTCTTACG ATTAGATTAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.007 +strand -126 : -120 ACACGTG AC RSP00716 Mean Expected Number 0.008 +strand -1 : +8 CAAAACCAA AC RSP00978 Mean Expected Number 0.002 -strand -118 : -127 cTCACGTGTT AC SP017556 Mean Expected Number 0.000 -strand -138 : -145 CCATCGAC Totally 4 motifs of 4 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G02860 |PROD: the same as GENE |635144..637262 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +330 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.35 C - 0.18 1 gagtgtgata tacaacaaat cacaaatgtg ctctcattaa ttttaaaaaa 51 cccaaatctt taatgtattc gtaacgagtc tgtcactaca ttaataataa 101 gtcattgaaa ttgaaatcca CCAATagttg cacagaagaa ttaatatata 151 tttccataac tctcataaca caaacttcac cttttaacga agaagaagat 201 ATGTTCCCAA AACAAACGTT TTGACTTTTT TTTTGTTTTC TCATATTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 -strand +30 : +19 AAAAAGTcAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G02870 |PROD: the same as GENE |complement(637214..638677) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.34 C - 0.19 1 aatacgaatt ttgtaaaaat gaatcttttc tttggaataa gtttacttca 51 aaatttacag tgaaaaaatt ataaaagatc cactgaacca atcaaatatt 101 gtatctatta ccgtatatca tcgaccggtt taaaataatt tgtaataggt 151 aaataacaga acgacgtcgt tttagagaac cgtgtaaacc ctttgtagtt 201 AAACCCTTTC CGCCGCGAAC TTCATCTCTC TGCTTTTTCT TCTCCATCGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.001 +strand +11 : +17 CGCCGCG AC RSP00355 Mean Expected Number 0.009 +strand -47 : -40 TAACAGAA AC RSP00870 Mean Expected Number 0.010 +strand -189 : -180 TGTAAAAaTG AC RSP00933 Mean Expected Number 0.004 -strand -126 : -138 TTTATAATTTTTT AC RSP01678 Mean Expected Number 0.008 +strand -112 : -101 CAATcAAATATT Totally 5 motifs of 5 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: thiamin pyrophosphokinase, putative |LOCUS: AT1G02880 |PROD: the same as GENE |complement(642752..644903) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +418 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.43 C - 0.14 1 agatattttt atactcctaa ttttatttac tttcttcttt agtttttggt 51 ggtgaaattc attattgttt ttataaaatg tcttcaactg gatactaatg 101 gttgattaat aggttgagcg aaacagacag atctgaaatc aacggtccac 151 gcaggaataa attctatttt aaacttaaat attttgtgat attttgaagt 201 CTTTTACAAT TGAAAATATT TTGTAATACC ATCTCTAAAT CTCCCTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.000 +strand -59 : -52 ACGGTCCA AC RSP00332 Mean Expected Number 0.007 -strand +32 : +25 ATGGTATT AC RSP00889 Mean Expected Number 0.001 +strand -54 : -48 CCACGCA AC RSP01231 Mean Expected Number 0.007 -strand -56 : -61 CCGTTG AC RSP01642 Mean Expected Number 0.004 +strand -125 : -116 AAATGTCTtC Totally 5 motifs of 5 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G02960 |PROD: the same as GENE |complement(666872..669805) |SUPPORT | 13 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.22 T - 0.24 C - 0.16 1 atatattttg gcccaaaatt ctatatgtag attaattcta aaatgtggga 51 tataaaaaac aaattataaa acatggaaga gttttattga attgggcctg 101 ttaaagcCCA ATtagttata caaaaaagaa gaagtgaata tctcagacaa 151 gggcccatat ccaagcatac taacgggcaa acgacggtac aaaggcgaac 201 ACCGGCAAGA TCGATTTGAA CGGTGACGGC GAATGTGGCG GCGAAGTAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.002 -strand -192 : -200 AAAATATAT AC RSP00933 Mean Expected Number 0.006 -strand -131 : -143 TTTATAATTTgTT Totally 2 motifs of 2 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: photosystem I reaction center subunit II |LOCUS: AT1G03130 |PROD: the same as GENE |complement(753307..754198) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.29 C - 0.21 1 taaaacgttg acctgattgt ctagtcttat gtggcatgtg ggaaacatat 51 ccaaactcat aaaacgacat ggcctaaaga tctagtaagg gtaagaggag 101 aatcgaatct tggaaccttA TTGGtccaaa tggtatgatc accttatccc 151 aaaatgttcg attctcatct accctctcgt tgtcagattc tattaagcca 201 TTTCATCTCT ATCCATTTAC TCCACAGAGA AAGATTCAGA GAAAACAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00247 Mean Expected Number 0.003 -strand -166 : -175 GCCACaTAAG AC RSP00286 Mean Expected Number 0.002 +strand -38 : -28 TCTCAtCTACC AC RSP00913 Mean Expected Number 0.003 -strand +7 : -3 GATGAAATGG AC RSP00914 Mean Expected Number 0.005 -strand +7 : -3 GATGAAATGG AC RSP00917 Mean Expected Number 0.002 +strand -194 : -185 GTTGACCTGA AC RSP00996 Mean Expected Number 0.003 +strand -194 : -185 GTTGACCTGA AC RSP01092 Mean Expected Number 0.005 -strand -8 : -18 ATAGAATCTgA AC RSP01475 Mean Expected Number 0.002 +strand -52 : -44 CCAAAATGT Totally 8 motifs of 8 different REs have been found Description of REs found 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G03150 |PROD: the same as GENE |756414..758612 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.24 T - 0.32 C - 0.17 1 gcagatccat cggaaaggtt tcttcaatcg ccgccgagga tttggttctg 51 ttgtctgaga aggtcgcgac gacgggagat aatgaaattt gatcatcttt 101 tacatgacgt catcagtgtt ataggcccaa atataaatgg gctttattaa 151 ttttctaact gggccatgta tattgctttg ttgttgtctc ctctttcttt 201 TTCCAGAGAA TCTGACGAAG CTCGAAGGGA TTTGAGAAAA AGAAGAGATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.006 -strand -97 : -104 TGTAAAAG AC RSP00447 Mean Expected Number 0.008 -strand -19 : -28 AaCAAAGCAA AC RSP01654 Mean Expected Number 0.005 -strand -87 : -96 GATGACGTCA AC RSP01664 Mean Expected Number 0.000 +strand -98 : -87 cATGACGTCATC AC RSP01664 Mean Expected Number 0.000 -strand -87 : -98 GATGACGTCATg AC RSP01731 Mean Expected Number 0.000 -strand -87 : -98 GATGACGTCATG Totally 6 motifs of 5 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1482. Group TF: HY5 /AC: RSP01664//OS: Arabidopsis thaliana /GENE: ARR9 (At3g57040)/RE: C-box (2) /TF: HY5 1539. Group TF: STF1/HY5 /AC: RSP01731//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CRE (A/T) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: small nuclear ribonucleoprotein D |LOCUS: AT1G03330 |PROD: the same as GENE |complement(817983..819563) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +266 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.35 C - 0.18 1 ttagctcttg aaggagacta aacctaagtg ttgaatagct atgagaagcc 51 attgagaaaa aactgacttc ttattttttt ttctcttctt cgtcacaaaa 101 ccatggaaac aaaacgaaaa agcttatcgt caGCAATctc gcctatatat 151 gcgtcagata ttataagatt tgtgtaaatc ttttctttat tcagttttgg 201 CTGGTGACCA AAACACACTT TGAGTTTTTA AATATTTACC CTTTGAGGCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.004 +strand -79 : -70 GCTTATCGTC AC RSP00114 Mean Expected Number 0.006 +strand -78 : -69 CTTaTCGTCA AC RSP00233 Mean Expected Number 0.006 +strand -114 : -105 TCTtCGTCAC AC RSP00331 Mean Expected Number 0.006 -strand -91 : -99 GTTTCCATG Totally 4 motifs of 4 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AHP5 |LOCUS: AT1G03430 |PROD: two-component phosphorelay mediator, putative |847874..849495 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +284 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.32 C - 0.20 1 ttttttttta aaaaaaaaaa aaaaagatat ctcgtttgtg gagaacgcat 51 gctagcaact tccctatcta taaaatcaga tttgcacccc acaaactaaa 101 atattattta cgtacttgat taattcctAC AATatagtca tttacaaaaa 151 taaccctcca tttgatattt aagtcaaaat cagtcaacgg aacgtggaat 201 AAATTATAAC TTTCGACGCT CCGATCAGAT TCATCATCAT CTCTCTCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +48 : +40 AGAGAGAGA AC RSP01013 Mean Expected Number 0.006 -strand -37 : -46 CAAATGGAGg AC RSP01734 Mean Expected Number 0.003 -strand -3 : -9 TCCACGT Totally 3 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G03550 |PROD: the same as GENE |complement(885623..887956) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.26 C - 0.20 1 tttaaaaccg gattcaaatt gaatcaaacc gttgaaaaac tcaacatgaa 51 aagcaaaacc ggaattctat tactagtgaa ctaaatccaa ttgaccgaat 101 aaaatccagt aaaccgatcc ataaaccaaa ATTGGaagaa aacaatgcct 151 gtttaatagg tgttgaaact ttgctgaaaa aaaacgaagc gagcaccctc 201 TAAAATGCCT TCGATTTCTC TGGCGCCATT GATTTAGTTT TCTCTCTCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGAGA AC RSP01213 Mean Expected Number 0.000 +strand +26 : +37 CCATTGATTTAG AC RSP01218 Mean Expected Number 0.000 +strand +26 : +37 CCATTGATTTAG AC RSP01711 Mean Expected Number 0.007 -strand -125 : -134 CTAGTAATAG Totally 4 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1121. Group TF: LFY /AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/RE: CL3 /TF: LFY 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: photosystem II family protein |LOCUS: AT1G03600 |PROD: the same as GENE |898875..899654 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.25 C - 0.25 1 gacatatggg ccttatctta atcgggcttt acaattaaac caaacagata 51 taaaaacaag caaatcctga cctggcagtg gatcttcatg tgtcatcctc 101 aaaaaccata gaatctaaga taagaagata agggacacgt gtcaaaaatc 151 caacacacag aaacacattt tccccgattt actaacgcac aacaaaactc 201 TTTCATTCTC TTCTTACACC TTTTCTCCAG AGTTCCGACA ATGGCTTCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 +strand -67 : -58 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -58 : -67 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -67 : -58 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -58 : -67 GACACGTGtC AC RSP00227 Mean Expected Number 0.002 +strand -84 : -76 AAGATAAGA AC RSP00248 Mean Expected Number 0.001 -strand -125 : -134 GCCAgGTCAG AC RSP00524 Mean Expected Number 0.010 +strand -66 : -60 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -59 : -65 ACACGTG AC RSP01014 Mean Expected Number 0.005 -strand -109 : -118 CAcATGAAGA AC RSP01035 Mean Expected Number 0.007 +strand -64 : -58 ACGTGTC AC RSP01035 Mean Expected Number 0.010 -strand -61 : -67 ACGTGTC AC RSP01092 Mean Expected Number 0.008 +strand -93 : -83 ATAGAATCTAA AC RSP01256 Mean Expected Number 0.002 +strand -66 : -59 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -59 : -66 ACACGTGT Totally 14 motifs of 9 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G03610 |PROD: the same as GENE |900886..903002 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +417 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.38 C - 0.20 1 tgtttttatt ttctttttat aaataaactg tttttgctat aaaaaaacaa 51 agacaccaat tgtaaaaaaa aaaaaaacat ctgctgatcg tctctgagta 101 aaaGCAATcg tttcgaatcc aaaattgccc gagaaaaagt tttgacttcc 151 ccgggaaaat ctctatcctt tcttcattca ttcaacaaag ttctgaatat 201 TTTCTCTGTT CTTCTCCCTC ATTTTATGGC TTTACCTTTT ATTCATTTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00778 Mean Expected Number 0.007 -strand -17 : -26 TGAATGAATG AC RSP01195 Mean Expected Number 0.002 +strand -5 : +8 AATATTTTcTCTG Totally 2 motifs of 2 different REs have been found Description of REs found 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: POR |LOCUS: AT1G03630 |PROD: protochlorophyllide reductase C |907650..909375 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.24 C - 0.23 1 attacagttc acctatcaac ggtgatcaga tcagttgaga gttaacaaaa 51 caatattaaa gcccatctca aggcccaata aacgagagat gaagaatctg 101 aaactagtga tctgATTGGt tgagggaaaa agctgtagcc tggaagacac 151 gtgtcactaa cccaaaacta ccttatcttc tgtcgctcct caattcgggg 201 AAAATCGAAG ACACTGTGAC ACTCTAGCAC CTTCAGTTCC GTACAACAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 +strand -55 : -46 GACaCGTGTC AC RSP00143 Mean Expected Number 0.005 -strand -46 : -55 GACaCGTGTC AC RSP00204 Mean Expected Number 0.003 +strand -55 : -46 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -46 : -55 GACACGTGtC AC RSP00231 Mean Expected Number 0.008 -strand -82 : -88 CCAATCA AC RSP00319 Mean Expected Number 0.001 -strand -19 : -27 CAGAAGATA AC RSP00524 Mean Expected Number 0.009 -strand -47 : -53 ACACGTG AC RSP01035 Mean Expected Number 0.009 +strand -52 : -46 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -54 : -47 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -47 : -54 ACACGTGT AC RSP01509 Mean Expected Number 0.000 -strand -81 : -89 ACCAATCAG Totally 11 motifs of 8 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G03730 |PROD: the same as GENE |complement(930828..931895) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +375 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.31 C - 0.12 1 tcgcatttgt ttgtttgtcc ctaacttgct atacgactaa actaaaaaaa 51 aaaaagaaga taatgcatta cgtctcaaac agatttgttg aagtaaaaaa 101 tggtataaac agaaatcgcg tttcgtcatt agtatttaat ttcataattc 151 cgagaggaga aagaaataaa cgaagaaaag agtaattaag tgatattaat 201 GGAAATAATA ATATTTTTGA TCAGAGTGAG TTCACGCAGT TTCCATGTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.009 +strand +43 : +49 CCATGTA AC RSP00331 Mean Expected Number 0.004 +strand +39 : +47 GTTTCCATG AC RSP00653 Mean Expected Number 0.005 -strand -36 : -46 TTCTtTCTCCT Totally 3 motifs of 3 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPHB2 |LOCUS: AT1G03860 |PROD: prohibitin, putative |complement(979307..981884) |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +728 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.27 C - 0.18 1 ataatgggct tagtgaaaca tattttaaaa taatgggcct gagcaatgtc 51 tttaaaattt gtcaaacact tgaggacgga aaacaaaaac ataactaaat 101 gcctaaaatg ggcctctcga aaaagataat gtgtttaatg aaccatattt 151 gaaagtaatg ggcctaagca aataggcacg aacatactag aaggtagttt 201 GCCAATGCAT ATCTGACCGA TTTCTCATTT CTAAAACCCT AAGCTTCGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +42 : +34 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +34 : +42 AAACCCTAA AC RSP01303 Mean Expected Number 0.005 +strand +33 : +42 aAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: FLA9 |LOCUS: AT1G03870 |PROD: fasciclin-like arabinogalactan-protein (FLA9) |complement(982508..983539) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.11 T - 0.39 C - 0.20 1 gaacattatc ttccacacat attttatgta aattattgac tctctcgatc 51 ccattacatg tgatgtgggc tctacctacg gttccaccaa cctcatattc 101 taatctaata tttttctcat atgctaattt taaatactaa acgaatctta 151 acggctgata tattcgtata tgaattcatc tacacaacat ttatgttaat 201 GATATATCTC TAGTCTAGAC ATTATTTGTC TACAAACGTT TTGTATTGAC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G04080 |PROD: the same as GENE |1051375..1056750 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +427 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.27 C - 0.25 1 tcactttgaa aaataaaatt gaaaggggat cctcggcttt aataatgtac 51 gggtcagtag gcccattaag aaatctaatg acccatttac ttaacgggcc 101 agATTGAgtt ccagtgtgcg ccgaccaaca cgatacgcgt cgcctttcgt 151 tttggttcgt cgtctctaac cctatacccc cctctcttcg tgtgtaaacg 201 AAACACACCA AAATCAAAAG CTGAGAGCTC TCTTACATTG AAGCTACTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.005 -strand -60 : -69 GACGCGTaTC AC RSP01600 Mean Expected Number 0.005 -strand -190 : -197 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EIF2 GAMMA |LOCUS: AT1G04170 |PROD: |1096945..1099897 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +477 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.37 C - 0.10 1 atggtttttt ttgtttaact gtgttttatg ttgggccaaa ttgttttttg 51 cttttaggca ttaaatttag tcgggccggc cctgcacata aaattaatat 101 gatgaaatgt tttgggtttg atactttgat tcatagaaaa agtaaattag 151 tctctactga tagtaattta attaaatact agtatttcat tattttgtaa 201 GAAATTTTAG AAAGGGAAAA AAAAAAAAGG TTACGCGAAG GAAACCAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.002 +strand +22 : +33 AAAAAAaGGTTA Totally 1 motifs of 1 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AXR3 |LOCUS: AT1G04250 |PROD: |1136257..1138582 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.29 C - 0.17 1 taatatatac ataatctaca agataaatca taagaaagat tcaataacag 51 taatagagta ataacagtga ttactgatta gtctaaaaga ctaaaactcg 101 aggatgatga cttaatcaaa gggcttagat tcatccacgt gtctaaaacc 151 cgtttaatca aagatctctt aaatacgaca tacacatgca gctacctcct 201 AGACAGAGAT ATAATACAGA CTCATCTCAC TTTGTATTAT TTGAGTGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 +strand -67 : -58 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 -strand -58 : -67 GACACGTgGA AC RSP00188 Mean Expected Number 0.002 +strand -67 : -58 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -58 : -67 GACACGTGGa AC RSP00340 Mean Expected Number 0.002 +strand -67 : -58 TCCACGTGTC AC RSP00524 Mean Expected Number 0.005 -strand -59 : -65 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -58 : -67 GaCACGTGGA AC RSP01035 Mean Expected Number 0.005 +strand -64 : -58 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -59 : -66 ACACGTGG AC RSP01274 Mean Expected Number 0.003 +strand -67 : -58 TCCACGTgTC AC RSP01722 Mean Expected Number 0.000 +strand -68 : -57 ATCCACGTGTCT AC RSP01734 Mean Expected Number 0.006 +strand -67 : -61 TCCACGT Totally 12 motifs of 12 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MPI7 |LOCUS: AT1G04260 |PROD: prenylated rab acceptor (PRA1) family protein |complement(1140527..1141364) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.21 1 tgcttaacat tacacttttg ttaagagtaa caacatacat ctaaaatctc 51 ataacagagg atagaaatcg tacccactgc aaaaaccaga tactcaaatt 101 agtccacttc acgacaacag attaatgggc ctttaagtat atggacatgg 151 gcctttgtca gttataagtc tcccttaacc agttgacttg tgttccctct 201 AACTTTAACA AAAGATTGTT CCTGAGAAAT TCTAGGGTTT CTGAAATCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.002 +strand -190 : -180 TACACTTTTGt AC RSP00628 Mean Expected Number 0.006 -strand +20 : +13 AACAATCT AC RSP01621 Mean Expected Number 0.008 +strand -190 : -181 TACACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dehydration-responsive protein-related |LOCUS: AT1G04430 |PROD: the same as GENE |1198136..1201526 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +723 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.30 C - 0.15 1 ataaaatatt tgtaagttgt aacaatctat atgtatatct ttgctccaaa 51 tattaattac tagacaaata aaaataaggg aaacaaaaag atttaacagc 101 aagtcgacag tgtggacatg gaaagagacc tttacaacga aaACAATgta 151 cttatcttcc aattatagga ataaacattt cgccagtgaa aaaaggtctc 201 ATTCCTTCCT TACTTGTGGA GATGGAGATC TGAATCTCTA AAGTTTCGAT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L23 (RPL23A) |LOCUS: AT1G04480 |PROD: the same as GENE |1216094..1217457 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.33 C - 0.23 1 cctttccgat gtgggactct ccaaatagtg ataagacgcg tctgatttaa 51 tttaaaactc tgcttgggct tttatgggcc taatatactt tgaacttggg 101 ctaaaaaacg aaatcgtttc ttcttccatt ttttaagcct actgaaaccc 151 tacaagaaga atgcgtcact atatattaaa ccgaaatcgt ttcttcttcc 201 TTCAAGCCGT CAACAATGTC GAAGCGAGGT TCGCACTTTT CCTCTATCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.002 +strand -133 : -124 GCTTTTATGG AC RSP01073 Mean Expected Number 0.001 -strand -135 : -143 CAAGCAGAG AC RSP01680 Mean Expected Number 0.000 -strand -184 : -194 GTCCCACATCG Totally 3 motifs of 3 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf 1498. Group TF: PpSBP2 /AC: RSP01680//OS: Arabidopsis thaliana; Glycine max /GENE: U2 & U5 (At); U1a & U1b (Gm)/RE: -80 element (cons) /TF: PpSBP2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G04530 |PROD: the same as GENE |complement(1234198..1236033) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.31 C - 0.20 1 atgatttctt gaacaaaaga acagattagt ttttgcttcg gagtgatggg 51 tcaaatagac aaaacataaa gttaaggaat aatttgtaaa caatatgata 101 ctaaaagatc ctttcctgag ttttgccgtt tctcaggaaa tctaacagaa 151 ccccacttat cttgtttctc taactgggtc ggtcacctaa gaacctcaaa 201 ATCATCTTCG TTTGGTCGTT GTCTTGGGGT CCTCCGAATC AAGAACCCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.008 +strand -58 : -51 TAACAGAA AC RSP00613 Mean Expected Number 0.008 +strand +38 : +45 ATCAAGAA AC RSP01017 Mean Expected Number 0.007 -strand -32 : -39 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pectate lyase family protein |LOCUS: AT1G04680 |PROD: the same as GENE |complement(1303528..1307881) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.33 C - 0.23 1 acggtaaata aaggagacgg aattaacaag taatcacgtt aaaaaaagct 51 aaacgaagaa tcaaattgtg taggagacga cgtcgtatag atacataacg 101 gccgtctgtc ttaacggctc tttttggtgt cgtcttcttt tatttttatt 151 ttggtctccc accagattct ataagaggac caatatatct ccaaactcgt 201 ACATTCACTG TCTTTAACTC TCACTACTCT CTCTCTCTCT CTCCTCTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.005 +strand +35 : +45 cTCTCTCTCCT AC RSP00864 Mean Expected Number 0.002 -strand +42 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +40 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +38 : +30 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +36 : +28 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +44 : +36 GGAGAGAGA AC RSP01209 Mean Expected Number 0.007 +strand -83 : -74 CTCTTTTTGG AC RSP01283 Mean Expected Number 0.000 -strand +43 : +27 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +41 : +25 GAGAGAGAGAGAGAGtA Totally 9 motifs of 5 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: KAB1 |LOCUS: AT1G04690 |PROD: potassium channel protein, putative |1313577..1315749 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.34 C - 0.14 1 aattttgtac cggaaattgc agaaatcatc gtattcgagt gttggatttg 51 ctatgatatt acattcaaaa ttttggtaca tattggttga tcatgaaaac 101 cggaaaagta aaaccaaacc ggtagcttac cgtattttgc taagtgttgt 151 cacttattaa gattggtaat agagtactta ttgtctgttc ttcttcattc 201 ATTACAACAA ACTCTTTGAG ACCTAAAGAG AGAGAGAGCG ATAGTGAGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand +27 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +29 : +37 AGAGAGAGA Totally 2 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: acetyl-CoA C-acyltransferase |LOCUS: AT1G04710 |PROD: the same as GENE |1321908..1324779 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.29 C - 0.19 1 agaaatgact gtcgagtttt tctgagagag aaagaaagac atcttactct 51 atacgacgtc gtttagcatc aaaaccagat gattgattcc gctaaaccct 101 gaaaccgtat atgtatgtaa cccatcctaa accgggatga agcggtttag 151 tttttttttt cctttgtctt ttatctgctt tacaacgaac ggtttagccc 201 AGTTTGGGCT TCAAAATAAT CAAACGAAAA CAATGGAAAA AGCAACGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.004 +strand -172 : -164 AGAAAGAAA AC RSP01208 Mean Expected Number 0.000 -strand +36 : +25 CCATTGTTTTCG Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ankyrin repeat family protein |LOCUS: AT1G04780 |PROD: the same as GENE |complement(1340668..1343583) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +619 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.11 T - 0.38 C - 0.26 1 ttatatgaat tatttattgt cgtaatattt tttaacggtt atcgtatcta 51 aaatagttat tcccagaatc catgtaagct tctcgaccgg actttgaacc 101 ttccccATTG Gacacagcca aaaggaaccg tgtccatctt cggttcctct 151 ccctctgaaa acttattcct ttcttttcaa cttcctagtc ttcttacttc 201 ACATATCATC TCTCTTTGTT TAGATCTCTT CTTCCCACGA TTACAAAATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.003 +strand -82 : -76 CAAAAGG AC RSP00331 Mean Expected Number 0.005 +strand -135 : -127 GAATCCATG AC RSP01093 Mean Expected Number 0.004 -strand +24 : +14 TCTAAaCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G04850 |PROD: the same as GENE |complement(1365118..1368792) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.24 C - 0.25 1 taaagcgggt cgaaacaata tggatcgtcc gattcaaact ggtgtgatct 51 taacggaagc tccgtttacc aaaccgttac ttacgtgcct aatctaaacc 101 gattaaaTCA ATttatatca atgtcagaac cggaaacaac tgaaccggta 151 ctgaaaacga ttgaaccgac cctatgtctt ccttcctctc tacccaagca 201 ACGAACGGAC TTCCCCATTA AAGGGAAAGA AAGACAATCG AGTCTCGAGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.002 +strand -90 : -79 ATTTATATcAAT AC RSP00157 Mean Expected Number 0.002 -strand -79 : -90 ATTgATATAAAT AC RSP00195 Mean Expected Number 0.002 +strand -140 : -130 TCCGTtTACCA AC RSP00247 Mean Expected Number 0.004 -strand -112 : -121 GgCACGTAAG AC RSP00698 Mean Expected Number 0.003 -strand -91 : -101 TGAtTTAATCG AC RSP00751 Mean Expected Number 0.002 +strand -105 : -94 AAACCGATtAAA AC RSP00763 Mean Expected Number 0.001 -strand -91 : -101 TGATTTAATCG AC RSP00863 Mean Expected Number 0.001 -strand -10 : -18 AGAGAGGAA Totally 8 motifs of 7 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 724. Group RE: Box III /AC: RSP00763//OS: Brassica oleracea /GENE: SLG2/RE: Box III /TF: unknown ||Identical REs AC: RSP00768 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G04930 |PROD: the same as GENE |complement(1396292..1399052) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.33 C - 0.27 1 catctgtact tcatcatctg aatcctatcc ttcttcactc ccccaataaa 51 gaaaaatggc gattactctc tctttctctc ccgtgtttaa attgacacta 101 ataccctcag gcccagatcg gcccaaaacc tgaaaacctc cctatgagta 151 agagggttcg cgcattatta aaccgtgacc aaatttgaaa cttttttttt 201 TCTTTTTACT GTTTCCCCAA AAATTCTTTT GAAAATCGAA TCGACAAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 -strand +14 : +3 AAAcAGTAAAAA AC RSP00861 Mean Expected Number 0.006 -strand -124 : -132 AGAAAGAGA AC RSP01104 Mean Expected Number 0.010 +strand -67 : -60 AAACCTCC AC RSP01599 Mean Expected Number 0.007 -strand -11 : -18 TTTCAAAT Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G04960 |PROD: the same as GENE |complement(1407800..1410867) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +195 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.34 C - 0.09 1 gtaatctgat tcaaaaggaa gtgtttgggg tgaatacata aattgttaaa 51 atattaatgt ttctggtcaa tcaaagctaa agctgaggtc tatagggcaa 101 taaaagtata aatacatatg taATTGTata tactgtacat attaacgttt 151 gatatgtata taagctcaag tggtgttaaa tattctaata tgtgtctaag 201 GACAATAGTT CGATTAAAAT TGGAAGCTTC GGGGGTAAGA ACATAAGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.009 -strand -28 : -34 CCACTTG AC RSP01016 Mean Expected Number 0.007 -strand -137 : -144 AGAAACAT Totally 2 motifs of 2 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: lipid-binding serum glycoprotein family protein |LOCUS: AT1G04970 |PROD: the same as GENE |1411169..1413625 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.29 C - 0.22 1 tgccctatag acctcagctt tagctttgat tgaccagaaa cattaatatt 51 ttaacaattt atgtattcac cccaaacact tccttttgaa tcagattacc 101 ccagaagGCA ATgcaaatcg aatgactaag gttattttag acatttctca 151 ataatccaaa ccattacgca acttcactgt attaacctgt tttcttcatc 201 GAAGAAGATA GAGAGACCAA AACAAAAAAA GCTTTGAATA TCCGCCATGG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05070 |PROD: the same as GENE |complement(1457067..1458742) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +212 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.22 C - 0.22 1 gaccaagagc aactaaagcc ccattcaata ggttccggct ggagttacgc 51 tataaccaaa ggcccaaaca cagaataatt tcacattatg attgtaatca 101 aaaggtaatc tcctgaaccg aaCCAATtca aatcagacca aaccgatcat 151 gtcgagcatt tgaaggagag acattgacgc aaaagagaat cttaaatcta 201 CACGCTTACT ATTTAACTGT CGACGAAATT AGAGAGCAAA AGAGTCACTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01031 Mean Expected Number 0.005 +strand -15 : -8 AGAATCTT AC RSP01127 Mean Expected Number 0.007 -strand +19 : +2 CAGT-- +9 bp --AGCG AC RSP01336 Mean Expected Number 0.000 +strand -54 : -41 TCATGTCGAGcATT Totally 3 motifs of 3 different REs have been found Description of REs found 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1221. Group TF: BGTF /AC: RSP01336//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Site1, mut) /TF: BGTF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB2394 |LOCUS: AT1G05190 |PROD: ribosomal protein L6 family protein |complement(1502343..1503826) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.28 C - 0.14 1 gggtaaattt tgtgaacagt tattataata atgggcctag aaacagtgag 51 ataataggcc atgatcaata tagataaatg ggttacacaa ataatgaatt 101 gtcccacaga aggatggtta aaagtaatgg gccgaaaata gtgagctaat 151 gggccgtgaa agtaatgatt tgaaagaggg gattacagaa gctgacgatg 201 GATAAGTCTT TTCTGGATAA AACGCTCTTC TTCTTCTCTT CATCCTCCTT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05205 |PROD: the same as GENE |complement(1509212..1510280) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.29 C - 0.18 1 ctaaagctcc catcttttct ttcttccttc tccgattgat gttttgcttc 51 aaatctgagt tctgagagtc gttgactgga aaaacctaga agaagaagaa 101 gatcaaattA TTGGtttatt caaaccgaaa taacaaaccg gaaagaatac 151 gccggttcaa tcaagtggtt aagttaaggt gtgatttcaa tttttcaact 201 GCGTTTGAGA TTTCACCAGG AGCAAGAGAA AGATGAGCGA GACGAGACCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.001 -strand -177 : -185 AGAAAGAAA Totally 1 motifs of 1 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05340 |PROD: the same as GENE |complement(1558849..1559757) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.41 C - 0.18 1 ccaaattact ttacagaaat catttgtatt gtttgttaat aaaaactttg 51 aaccactttg attactatat tatttttttg gaatttattc tggtgacatt 101 aatgttctat cctccacgcg gttctcataa accgacttgg cttctttatt 151 tttcctttat ctttctctat atatttacac acacacgcat ttgtgcagag 201 ATATTCAAAG ATTAGAAACA TTCTTGATAG ATACAAAAAA CATTTTTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01016 Mean Expected Number 0.005 +strand +14 : +21 AGAAACAT AC RSP01237 Mean Expected Number 0.002 +strand -36 : -27 CTCTATATAT AC RSP01733 Mean Expected Number 0.003 -strand -80 : -85 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05360 |PROD: the same as GENE |1564621..1567464 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +194 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.24 C - 0.23 1 gactaacaaa acaaaaaaca aaaaaactaa catctcctat agcctttgat 51 tccttgtcac gttatgaaat gacacgtggt tcttttggaa ccggtttata 101 aataaccggt aaaccgaaga gaagaaCCAA Tagaatgcgc catatcacat 151 ccaacaaaac gggaacctga ttttggtcgc ataccttaaa cataggagat 201 CGAGATTGAT GGATCCTTTC TCAATCCATC CAAAATCTTC AGACCCAATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00204 Mean Expected Number 0.002 +strand -130 : -121 GACACGTGGT AC RSP00340 Mean Expected Number 0.004 -strand -121 : -130 aCCACGTGTC AC RSP00943 Mean Expected Number 0.002 -strand -129 : -139 TCATTTCAtAA AC RSP01032 Mean Expected Number 0.002 -strand -25 : -34 CCAAAATCAG AC RSP01114 Mean Expected Number 0.008 -strand -25 : -31 CCAAAAT AC RSP01255 Mean Expected Number 0.002 +strand -129 : -122 ACACGTGG AC RSP01596 Mean Expected Number 0.002 +strand -139 : -129 TTaTGAAATGA AC RSP01602 Mean Expected Number 0.006 +strand +19 : +26 TCTCAATC Totally 8 motifs of 8 different REs have been found Description of REs found 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G05410 |PROD: the same as GENE |complement(1585370..1587773) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +506 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.33 C - 0.24 1 ttcaatatcg ttttcaaact ctccaaaata ctgcctgatt gcaatgttac 51 aattttgtca tggacccacc aatccctgtg aaccaagccg gttactgttt 101 attactccga cccgacccgg gctttttaaa gataggccca agaaggccca 151 atgattgaaa tgtgaaatgt ttgatacatt gatgtttttg atcttcgctc 201 AAACCCTACA ATAAAACTTT GGTTCCTCCG AATTTCGAGT TCTTGTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.005 +strand -134 : -125 cACCAATCCC AC RSP00941 Mean Expected Number 0.004 -strand -41 : -48 TTTCAATC AC RSP01054 Mean Expected Number 0.002 +strand -158 : -148 AAtGTTACAAT AC RSP01214 Mean Expected Number 0.002 -strand -55 : -64 CCTTCTTGGG AC RSP01594 Mean Expected Number 0.004 +strand -48 : -41 GATTGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G05430 |PROD: the same as GENE |complement(1594056..1595817) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.22 T - 0.37 C - 0.17 1 gagttggttt tcattttggc ttgatttggt tacattaaca ccggttatga 51 ttagtatcgt cgtatcgatt tcaattttag ttcggtttat atttttccac 101 ATTGGttttt cgccctctcc ggttataatg tcgaattaag tcagattcga 151 accggttctt ccccatgatc gattcgattc gatggagtga ggagagagaa 201 GGACTATAAG TTTCCATGAG AAAGAAGAAG TAATCACACA CTTGTTCTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.007 +strand +10 : +18 GTTTCCATG AC RSP00632 Mean Expected Number 0.000 +strand -83 : -71 TCcGGTTATAATG AC RSP00653 Mean Expected Number 0.001 -strand -1 : -11 TTCTCTCTCCT AC RSP00865 Mean Expected Number 0.000 +strand -10 : -2 GGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 608. Group TF: S2F /AC: RSP00632//OS: Spinacia oleracea /GENE: RPL21/RE: CIV /TF: S2F 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G05620 |PROD: the same as GENE |1679165..1681705 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.31 C - 0.14 1 gccaaagcat catcatctct aatgtagtag atccgtcgag agtaagaact 51 ctgactagaa aaatatggaa agagataatg gaaaacgtga ctgaataaaa 101 ttcgatttgt ttatACAATa acaaacccac gtttgtagac ttggaaaaga 151 gacacctttt attttttttt atgaactctt tggtgctaga tcataattgt 201 ATTCCAAAAG TTTTTTCTGT TGTGTGTAAA AAGCCCGGAT TTAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00838 Mean Expected Number 0.008 +strand -168 : -163 CCGTCG AC RSP00864 Mean Expected Number 0.002 +strand +43 : +51 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT1G05805 |PROD: the same as GENE |1744773..1747692 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.34 C - 0.20 1 caaagcccaa aggttaagct gactcgttac aaaataaata agtattaata 51 aaggtttttg attggcttat ttcggtttaa atttaatacc atatctttcg 101 gaagatcacg tgagacacat gtgacatcca acgaatagCC AATcgctgaa 151 aagtgaagac tttttgttac cccataaaca aaagcatcat ctctctctca 201 TCTTTTATTT TTCTTTTAGA AACCAAACTT TTCAGATTTC TCTCTCTCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.007 -strand -136 : -142 CCAATCA AC RSP00263 Mean Expected Number 0.001 +strand -76 : -68 CATCCAACG AC RSP00864 Mean Expected Number 0.002 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -3 : -11 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +49 : +41 GGAGAGAGA AC RSP00881 Mean Expected Number 0.004 -strand -139 : -148 ATCAAaAACC AC RSP01032 Mean Expected Number 0.006 -strand -126 : -135 CCGAAATAAG AC RSP01202 Mean Expected Number 0.002 +strand -194 : -187 CCAAAGGT AC RSP01469 Mean Expected Number 0.008 -strand -77 : -86 TCACATGTGT Totally 9 motifs of 8 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: aspartyl protease family protein |LOCUS: AT1G05840 |PROD: the same as GENE |complement(1762767..1766280) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.19 T - 0.23 C - 0.16 1 gaaagttgaa acgacaaaaa ggataatata actgaacagt aaaatatgag 51 ttgtaacagc gtcagtaaca cctaagttta catgtaataa atttacctga 101 atgaaaccat aaaaatatcg aattaatggg tcgaaagaaa aagaaaagtc 151 cacgctggaa ataaaaaata ataaaatacg ggaattggtg gaagaagtga 201 CCAAACAAAC TCTGTAATTT CTGAACTTCC TCGTCGTCGT CGTCGTCGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00440 Mean Expected Number 0.002 -strand -50 : -58 GGACTTTTC AC RSP00467 Mean Expected Number 0.004 -strand +3 : -7 TGGTCACTTC AC RSP00468 Mean Expected Number 0.002 -strand +4 : -7 TTGGTCACTTC AC RSP00559 Mean Expected Number 0.002 +strand +13 : +23 TGTAATTTCtG AC RSP01482 Mean Expected Number 0.002 +strand -7 : +4 GAAgTGACCAA Totally 5 motifs of 5 different REs have been found Description of REs found 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G06000 |PROD: the same as GENE |complement(1820307..1821892) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.35 C - 0.19 1 agcaccacct accttctttt gtttagggaa tgggccggct ctgtccaacc 51 ttattttaat aaggcaccaa accaaaccac cacgtagcaa ttacgtcgaa 101 gtaggtatgg ctttatcgac tggtctatat ttgtttgggg ttttggtcct 151 tttttttaat agagatatat atgctgcatc tgttttataa ataagagttc 201 CATTGTCGGC AGTAAAACTA AAAATAAAAG GAGTTCCACT TTTCAATTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.002 +strand -197 : -188 aCCACCTACC AC RSP00189 Mean Expected Number 0.002 +strand -122 : -113 aCCACGTAGC AC RSP00433 Mean Expected Number 0.000 -strand -185 : -196 GaAGGTAGGTGG AC RSP01259 Mean Expected Number 0.001 -strand -114 : -121 CTACGTGG AC RSP01453 Mean Expected Number 0.008 +strand -194 : -188 ACCTACC Totally 5 motifs of 5 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 413. Group TF: AtMYB84 /AC: RSP00433//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB84 BS /TF: AtMYB84 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: bZIP transcription factor, putative (bZIP69) |LOCUS: AT1G06070 |PROD: the same as GENE |complement(1834828..1837647) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +532 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.25 C - 0.25 1 aaattagcaa ccacgtgaac caatttgaca aaaataattt atttacgctc 51 ttcacgaacc aaccagacat attgatcatc atccaacggt cagtaacatc 101 gttcATTGCa acacgctaac gcagctgatt acaccctaat tccgacaaaa 151 gtaccactta cccgaaccaa attacgttta aacgacatcg tttacgccgt 201 AAATCTTCTG ATGCACACTA GTTCGAAGGA TCCTTTAATG GGAGAGAGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 +strand -21 : -8 AAACGACAtCGTTT AC RSP00263 Mean Expected Number 0.002 +strand -121 : -113 CATCCAACG AC RSP00640 Mean Expected Number 0.003 -strand -183 : -190 TCACGTGG AC RSP00653 Mean Expected Number 0.001 -strand +50 : +40 TTCTCTCTCCc AC RSP00865 Mean Expected Number 0.000 +strand +41 : +49 GGAGAGAGA AC RSP01303 Mean Expected Number 0.010 +strand -71 : -62 TAcACCCTAA AC RSP01305 Mean Expected Number 0.007 +strand -71 : -62 TaCACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1198. Group RE: Telo box /AC: RSP01305//OS: Nicotiana tabacum /GENE: Thio h2/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyacylglutathione hydrolase |LOCUS: AT1G06130 |PROD: the same as GENE |complement(1857766..1860715) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.39 C - 0.16 1 taagaaaaga ttatatatag gatgaattta taaactacac tattaaccta 51 tttcaaatat cggtttatgt atttatctat catacggttt acttaataat 101 cattagacca cgcctccctg attatttggt ttggtttggt ttggtttcgg 151 tttagtagta gtgtgactga cttggtcact tgggtcagtt tctgttgtca 201 GTTCACAGAG ATTTGTGTAG AACTCTCTCT CTCTCTATAA CAAAATTGGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +36 : +28 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +34 : +26 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +32 : +24 AGAGAGAGA AC RSP01063 Mean Expected Number 0.001 -strand -118 : -129 ATGATAGATAAa Totally 4 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G06190 |PROD: the same as GENE |complement(1892272..1894137) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.29 C - 0.18 1 gaaattgatt tctgaattcg gtttggaaga gttgtaaccg agattagacc 51 gaatatagat tattggtttg cgttagggca atcgcttctg aaatgtcacg 101 gtttatttta tgttttgtcg gcaatttcac aaagcccata aagcCCAATa 151 tcaacatttt tgtgttacca agataagcca gagaaaacgc gagagtcgac 201 AAGGAAAAGG CAATGCAAGA AGAAGCTTAA ATCTCTCTTC TCTGCTCCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.008 +strand -33 : -24 CCAAGATAAG Totally 1 motifs of 1 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: lipase class 3 family protein |LOCUS: AT1G06250 |PROD: the same as GENE |complement(1913255..1914894) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.26 C - 0.18 1 gtaactaaca atagtacatg ttttaagcgt tgattaaccg ttaaaaaaag 51 tgatgtgaat cctacaaatt tgtaataaac gtacacttaa aataaactta 101 aaccggcact atttatgtga agggccatac attaaggacc atttccttca 151 cgcattatcc aattctttca cacaaggagc aatgttactc tccaaacatc 201 AAGAACAAGA AGAAAAAGGT TTGTGAAAAA AAAACAAAGG CAAACATGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00333 Mean Expected Number 0.002 +strand -76 : -68 CCATACATT AC RSP01056 Mean Expected Number 0.002 +strand -20 : -10 AATGTTACTcT Totally 2 motifs of 2 different REs have been found Description of REs found 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT1G06270 |PROD: the same as GENE |complement(1918087..1919746) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +474 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.31 C - 0.22 1 gtctcctgaa ttttatagga ttaaaatttg ttaactattc ctaggtccaa 51 atctgaaatt tttgtggctg aaccgaccaa attccggtta aacgtaaacc 101 ctttgaatat atccggttag gttttaaaac ctcaaagccc aacagaggct 151 gatagaatca aaacgcaaga ttccttcttt cctaatcaca ccattctgct 201 ACATATCAAA TCTGTGAACA AACGTATTCG ATCAAAGCTC ATGGGTGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.005 -strand -78 : -87 AACCTAACCg AC RSP00734 Mean Expected Number 0.004 +strand -42 : -35 CAAAACGC AC RSP01008 Mean Expected Number 0.009 -strand -79 : -85 ACCTAAC AC RSP01086 Mean Expected Number 0.007 -strand -103 : -112 TTTACGTTTa AC RSP01091 Mean Expected Number 0.008 +strand -49 : -39 ATAGAATCAAA AC RSP01092 Mean Expected Number 0.007 +strand -49 : -39 ATAGAATCaAA AC RSP01103 Mean Expected Number 0.008 +strand -74 : -67 AAACCTCA AC RSP01692 Mean Expected Number 0.005 +strand +27 : +34 TTCGATCA Totally 8 motifs of 8 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ACD32.1 |LOCUS: AT1G06460 |PROD: |complement(1966834..1969535) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.35 C - 0.18 1 tgcaatgcaa cttgcattta cctttacaca gattatattt gttttcacaa 51 gaattaataa ttttcatttt taatggagtt cgcgttttga caaaaaaaat 101 attgaaccaa aaaagaaaaa tgttttCCAA Taaaaacgag tcgttgtcat 151 ttcttgtccg tttccggaag aaaatatctt ttaatcttca agcagatatt 201 TTCGAATCCA GCGCGCGAAG TTAAAGCCAC TCATTTGTTT CATCGATCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.002 -strand -112 : -119 CAAAACGC AC RSP01065 Mean Expected Number 0.001 -strand +50 : +40 AGGATCGATGA AC RSP01195 Mean Expected Number 0.001 -strand -98 : -110 AATATTTTTTtTG Totally 3 motifs of 3 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G06630 |PROD: the same as GENE |2027747..2029592 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +323 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.33 C - 0.23 1 tgttaaaatg caaagtactt acctaattgt caaatgacta aacactatgg 51 tagttatcca caacttaaaa atcaatctaa atgtccagat tgatttcggt 101 acgcgtcggt ttccattgat gtttggttcg gtTCAATtaa catatccaca 151 tataaccgat cggttttaaa acgaaattcc taattaccca gaattgctct 201 TGAGAATCGA TCACTAGTGT CTCTTTCTCT CCGCCGTCCT CCACCGCTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.001 -strand -172 : -182 CAATTAGGTAA AC RSP00861 Mean Expected Number 0.003 -strand +28 : +20 AGAAAGAGA AC RSP00943 Mean Expected Number 0.003 -strand -164 : -174 TCATTTgACAA AC RSP01596 Mean Expected Number 0.003 +strand -174 : -164 TTGTcAAATGA Totally 4 motifs of 4 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PSBP |LOCUS: AT1G06680 |PROD: photosystem II oxygen-evolving complex 23 (OEC23) |2047878..2049417 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.19 C - 0.25 1 ctaaaataga tggaatcgaa ggcttatgaa tctgacgtgg aacaagaaga 51 aagcgtatct gccacgtggc acaatacaac acctcaacag ccttatctgg 101 acatcaacag agagatcctC CAATatccga aaccaaccaa tcagcttcac 151 tcttggtttc acctccatac attaacacac caacaatcct caaaaaacac 201 TTTCATAACT TAATCACACA CAAGGAGAGA AGAGAGAAAG AGAGAAAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.001 +strand -140 : -131 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.002 -strand -131 : -140 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -140 : -131 GCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -131 : -140 GCCACGTGGC AC RSP00153 Mean Expected Number 0.003 +strand -139 : -130 CCACGTGGCa AC RSP00153 Mean Expected Number 0.001 -strand -132 : -141 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -138 : -131 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -133 : -140 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -140 : -131 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -131 : -140 GcCACGTGGC AC RSP00214 Mean Expected Number 0.001 +strand -168 : -161 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -161 : -168 CCACGTCA AC RSP00219 Mean Expected Number 0.000 +strand -141 : -130 TGcCACGTGGCA AC RSP00219 Mean Expected Number 0.000 -strand -130 : -141 TGcCACGTGGCA AC RSP00248 Mean Expected Number 0.001 -strand -160 : -169 tCCACGTCAG AC RSP00316 Mean Expected Number 0.008 -strand -43 : -48 AACCAA AC RSP00333 Mean Expected Number 0.002 +strand -36 : -28 CCATACATT AC RSP00653 Mean Expected Number 0.004 -strand +38 : +28 TTCTCTCTtCT AC RSP00682 Mean Expected Number 0.002 +strand -140 : -131 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -131 : -140 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -139 : -132 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -132 : -139 CCACGTGG AC RSP00861 Mean Expected Number 0.004 +strand +35 : +43 AGAAAGAGA AC RSP00861 Mean Expected Number 0.004 +strand +43 : +51 AGAAAGAGA AC RSP00936 Mean Expected Number 0.000 +strand -141 : -130 TGCCACGTGgCA AC RSP00936 Mean Expected Number 0.000 -strand -130 : -141 TGCCACGTGgCA AC RSP00938 Mean Expected Number 0.000 +strand -141 : -130 TGCCACGTGGcA AC RSP00938 Mean Expected Number 0.000 -strand -130 : -141 TGCCACGTGGcA AC RSP01034 Mean Expected Number 0.005 +strand -137 : -131 ACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -134 : -140 ACGTGGC AC RSP01275 Mean Expected Number 0.002 -strand -160 : -169 TCCACGTCAg AC RSP01509 Mean Expected Number 0.003 +strand -65 : -57 ACCAATCAG AC RSP01656 Mean Expected Number 0.000 +strand -170 : -159 TCTGACGTGGaA AC RSP01734 Mean Expected Number 0.008 -strand -160 : -166 TCCACGT Totally 34 motifs of 22 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 302. Group RE: REalpha /AC: RSP00316//OS: Lemna gibba /GENE: Lhcb2*1/RE: REalpha /TF: unknown 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G06980 |PROD: the same as GENE |complement(2143030..2143820) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.31 C - 0.17 1 aatttatata gttttgagta aattcaaaca atagccataa cttagataat 51 aatacatgag ggtggattca agttaatagc gagaagacac gagggcattt 101 aagtcattta ctgtttgtag acgtatggTC AATcccgctt tggtgttacg 151 tgaagtgttg gctcctatat aacctcgtct tctccaactt gttcttcccc 201 ATAAATCTGA TAATCAATAT ATATCAAATA CTCAAAACAA AAGAGAAAGA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT1G06990 |PROD: the same as GENE |2148386..2150149 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +6 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.28 C - 0.16 1 gctcaatact atgggctctc tataaagccc atttgattgg cccattaaaa 51 caatggccat gagtttttgc ctaaaatgtc aacagttcaa ggggattatt 101 ttttatttta atatgagaca tacattacat atagtactag tagactccaa 151 taatcaaccg agtcgtccta taaagggaag aaagaaaaga gagaagaaga 201 GACAAAATGT TGATCCATGT AATTATATTC ATGATCATAA CGACAATGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -134 : -119 TTGCCTAAAATGtCAA AC RSP00080 Mean Expected Number 0.004 -strand -119 : -134 TTGaCATTTTAGGCAA AC RSP00163 Mean Expected Number 0.004 -strand +9 : -2 CaTTTTGTCTC AC RSP00860 Mean Expected Number 0.008 +strand -22 : -14 AGAAAGAAA Totally 4 motifs of 3 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CONSTANS-like protein-related |LOCUS: AT1G07050 |PROD: the same as GENE |complement(2164191..2165238) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.30 C - 0.17 1 agtataaaga tgaaaaaagt ggctaaatgg tctctggtta gaggcaaagg 51 accagtaaga gaggtccctc aaattgggtc caagctggac tctctaaacc 101 aatcagcttg agattattcc atcacttttg ggataagatg ccacatcgta 151 tcagttacat cacatattaa agtattaaag aaacaccttg ctctctaaat 201 ATTGTATTTG TATCTATATA TAGTTTTCGT ATGGTGACGG ATTTACAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00314 Mean Expected Number 0.002 -strand -112 : -122 TCCAgCTTGGA AC RSP01237 Mean Expected Number 0.008 +strand +12 : +21 aTCTATATAT AC RSP01509 Mean Expected Number 0.001 +strand -103 : -95 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L35a (RPL35aA) |LOCUS: AT1G07070 |PROD: the same as GENE |2168563..2169850 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.35 C - 0.19 1 tgccctttga tttgaatttt atgttatggc gcatcttaat tgttaatttt 51 gacggcgcat tataagaact catttaagga caacataagc aaggggccga 101 tagcctgacg agttgacatt cggcccatat gtagatttat aggcccatta 151 atatcaaatc gatgacgttt acttgccatc taattacctc cgcgactgat 201 AAGGATTCGC TTATTAGGTT TTTTTGAGTT TTCGTCTCCG TTTTCTGAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00858 Mean Expected Number 0.006 -strand -13 : -20 GGTAATTA AC RSP00997 Mean Expected Number 0.004 +strand -40 : -31 GATGACGTTT AC RSP01654 Mean Expected Number 0.007 +strand -40 : -31 GATGACGTTT Totally 3 motifs of 3 different REs have been found Description of REs found 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G07090 |PROD: the same as GENE |complement(2173951..2174893) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.06 T - 0.38 C - 0.27 1 tagggccatg accacgtgat ttagtttctc acatttctat ttttcctact 51 cttctttcta catcctctac ttctttcaca attcacactg ttcaacccaa 101 aaccctctgt tctttctttt ctttttttgt ctgatttgaa aattaaataa 151 ataaaacccc aaaacctaac aaagcttcac actctttctc tctctctttt 201 AACTACTAAA CACTAAATTA TCAATCCGCT CTCTTCTCAA AAAAAAAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00010 Mean Expected Number 0.006 +strand -188 : -183 CACGTG AC RSP00010 Mean Expected Number 0.006 -strand -183 : -188 CACGTG AC RSP00640 Mean Expected Number 0.000 -strand -182 : -189 TCACGTGG AC RSP00978 Mean Expected Number 0.001 -strand -181 : -190 ATCACGTGgT AC RSP01599 Mean Expected Number 0.006 -strand -60 : -67 TTTCAAAT AC RSP01684 Mean Expected Number 0.009 +strand -186 : -181 CGTGAT AC RSP01699 Mean Expected Number 0.003 +strand -187 : -181 ACGTGAT Totally 7 motifs of 6 different REs have been found Description of REs found 10. Group RE: G-box /Group TF: TAF-1 /AC: RSP00010//OS: Catharanthus roseus /GENE: Str/RE: G-box /TF: TAF-1 ||Identical REs AC: RSP00134 RSP00302 RSP00390 RSP00657 RSP00726 RSP00786 RSP00815 RSP00957 RSP01471 RSP01532 RSP01533 RSP01534 RSP01749 RSP01770 RSP01782 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown 1502. Group RE: CARE B2 /AC: RSP01684//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE B2 /TF: unknown ||Identical REs AC: RSP01693 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G07130 |PROD: the same as GENE |2187775..2188732 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +152 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.29 C - 0.16 1 attttttgag aagttaaagt aagcactaag cacctaataa cgttgatgtc 51 caacctaaaa aggagaaaat aaccctgaaa gattctacag ttaattggtt 101 ccggaaatta ACAATccacc gtaggaagcg actatactac cacaaaatga 151 ataaaagttt agtaatctga gtacgtatgc tttacaataa agttatagaa 201 TATATTTTCA TCATCCGATT TTTTATTAGA AAAAAATCAG CAATTCCCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.010 -strand +8 : -1 AAAATATAT AC RSP00940 Mean Expected Number 0.006 -strand -75 : -84 TcCTACGGTG AC RSP01031 Mean Expected Number 0.009 -strand -115 : -122 AGAATCTT AC RSP01033 Mean Expected Number 0.008 -strand -138 : -147 CCTTTTTAGG AC RSP01214 Mean Expected Number 0.003 -strand -138 : -147 CCTTTTTAGG Totally 5 motifs of 5 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G07170 |PROD: the same as GENE |2200133..2201139 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +552 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.27 C - 0.20 1 tttctgcttt ttctttgtca actgcgattt tccagaaatt aaatgacttt 51 gggaagataa aaagtcaaat aaggccgaaa taggaaagaa atcaacacct 101 aaaattaaaa agcccatcag gaaagccttt aatgagatag cccatattaa 151 gtcggaccta catggatctt tagaaacccg acccgggtcg ttttatttgc 201 AGAGCCATCT CTTGTTCGGA TCGGCGGCTC GGAGATCAGG GATCGCTAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.005 -strand +29 : +23 AGCCGCC AC RSP00115 Mean Expected Number 0.007 +strand -116 : -106 AaAGAAATCAA Totally 2 motifs of 2 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATNDI1 |LOCUS: AT1G07180 |PROD: |2204319..2206916 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.31 C - 0.19 1 acttaaaaaa cgcccaacca atggcataca ctgaaaatgt tttctaaaca 51 tttaatattt ctgtggctac caaaaagaaa tcaagagtta ttttccattt 101 attctgggtg aaagagaaac agagtgccac ctgtcatttc ctaatctggc 151 acgtaggttt ttctcatacg tattacagtg aataatacag tataccaaag 201 GCGGCTCGTA GCAGAGTTTG TTCGATTCTC TTAACCACAT TAGGTTTGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 -strand +6 : -1 AGCCGCC AC RSP00055 Mean Expected Number 0.004 -strand -139 : -150 AGAAaTATTAAA AC RSP00056 Mean Expected Number 0.003 +strand -75 : -66 GCCACcTGTC AC RSP00115 Mean Expected Number 0.008 +strand -127 : -117 AaAGAAATCAA AC RSP00176 Mean Expected Number 0.001 -strand +10 : -1 TAcGAGCCGCC AC RSP00219 Mean Expected Number 0.000 -strand -65 : -76 TGACAgGTGGCA AC RSP00304 Mean Expected Number 0.006 -strand -65 : -72 TGACAGGT AC RSP00438 Mean Expected Number 0.009 +strand -1 : +5 GGCGGC AC RSP00574 Mean Expected Number 0.007 -strand -95 : -102 CAGAATAA AC RSP00807 Mean Expected Number 0.009 -strand +5 : -1 GCCGCC AC RSP00936 Mean Expected Number 0.000 +strand -76 : -65 TGCCACcTGTCA AC RSP01598 Mean Expected Number 0.007 +strand -69 : -62 TGTCATTT Totally 12 motifs of 12 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G07240 |PROD: the same as GENE |2223690..2225447 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +198 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.37 C - 0.20 1 aattcgctgt cttccacttc aacttttgtt tcaagtccag taccagtagg 51 atatctctac tactcttttt agcgtcaatt tataataatt gtctcgctgt 101 ttctttttct GCAATggaga ttctaataca catcattcag atatctgaat 151 gtctgagatc cagagatcta actaagcaat aatgttgcta atttattgtt 201 CCACTTTTGT ATGCTCAAGG TCCCAAACAA GAGATTAAAA TACAAATTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00953 Mean Expected Number 0.005 -strand -110 : -118 CAATTATTA Totally 1 motifs of 1 different REs have been found Description of REs found 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RPL4 |LOCUS: AT1G07320 |PROD: 50S ribosomal protein L4, chloroplast (CL4) |2249132..2250526 |SUPPORT | 2 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.34 C - 0.19 1 caactatcat cgttttatca cagagtttta tgtctcaaaa aacctgctgg 51 ctatataaga ggcttttgac ttttggagtt tgactctttc ttactagcga 101 cagctggagt tattcatgaa caggatagtt atatccttat gtccaaacag 151 atgcataaat tctcaccaag cacaagatag gcatttgaag agtggataac 201 ACTTTCTCAG TCTTTCTTCT TCTTCTTCGT TGTGATAGGT CAGGTCAGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.006 +strand -129 : -122 TTTGGAGT Totally 1 motifs of 1 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 17.8 kDa class I heat shock protein (HSP17.8-CI) |LOCUS: AT1G07400 |PROD: the same as GENE |2274940..2275755 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +205 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.35 C - 0.18 1 tttgtataca aaatatatgt cttcgatgtc aaatatatac atgataccag 51 tttcaatttc taaacattat ctcataatat ttgggcctca ggagcccatt 101 atagcccata aaacgcataa cggctgaata gagtcgtact gtacttgaaa 151 ttgaaaggca tctactagta gactctagag ttttctggat tctgttttcc 201 AATCTTTTCA TCGTTTTCGT GTGAAGTTTA AAGAAGTTTG GGACCCGTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.008 +strand -191 : -183 AAAATATAT Totally 1 motifs of 1 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SMO2-2 |LOCUS: AT1G07420 |PROD: sterol 4-alpha-methyl-oxidase 2 (SMO2) |2277804..2280294 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.23 T - 0.27 C - 0.17 1 caaagcgaaa tatactaaaa tagggtcact agggaggtgg aagagggtga 51 tgtgcacgtg gggatgtgtt agcaatagca ttcatttact ccaccgaaaa 101 ggccctgact ctgatagaga gagtggtctt aaaaaaataa aaataaaaag 151 agttggtgag aaaaataaaa aaatatctca gttgccagat atctattttc 201 ATTTTGGTGA CAGTCTGTTG TTTGTTTCAC TCGTGGCTCC TCTCCCACCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.003 +strand +42 : +48 CTCCCAC AC RSP00654 Mean Expected Number 0.009 -strand -152 : -161 CACCCtCTTC AC RSP00680 Mean Expected Number 0.007 -strand -85 : -94 TAtCAGAGTC AC RSP00950 Mean Expected Number 0.002 -strand -41 : -51 CTCACCAACtC AC RSP01083 Mean Expected Number 0.001 -strand -40 : -51 TCTCACCAACtC Totally 5 motifs of 5 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transcription factor IIA large subunit |LOCUS: AT1G07470 |PROD: the same as GENE |2291454..2294549 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +266 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.41 C - 0.19 1 atataaaaac gtaaataaca aattttttgt attcattaaa ttttttaaaa 51 tctattttcc ttttgtattt tttgcatctt ttttgtctga aaaagagaga 101 aaggaaataa aatcTCAATc gtggagatga tagcacgtgt caatgttgcg 151 acacgatctg atccaaacct atttatattc ttcgctgctt tttctgtctt 201 GACCGCTCTT CTTCTATCGA TCTCTGATCT CCTCTTCTCT CTGTCTTCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -69 : -60 aGCACGTGTC AC RSP00445 Mean Expected Number 0.003 +strand -112 : -103 gAAAAAGAGA AC RSP00524 Mean Expected Number 0.007 -strand -61 : -67 ACACGTG AC RSP00817 Mean Expected Number 0.002 -strand -60 : -69 gACACGTGCT AC RSP00862 Mean Expected Number 0.000 +strand -103 : -95 AGAAAGGAA AC RSP01035 Mean Expected Number 0.007 +strand -66 : -60 ACGTGTC AC RSP01086 Mean Expected Number 0.003 -strand -186 : -195 TTTACGTTTt AC RSP01602 Mean Expected Number 0.008 +strand -88 : -81 TCTCAATC AC RSP01757 Mean Expected Number 0.003 -strand +3 : -5 GTCAAGAC Totally 9 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G07630 |PROD: the same as GENE |2349094..2351564 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.09 T - 0.42 C - 0.25 1 gacaccaatt tttcttctcg cagatttaaa tcagacaaaa cccgaataat 51 atctcttaca gtttcttttc ttttattcct ttctctggta attaataaca 101 ATTGGttaga aaaatcattt tctctttgca cataagtcaa ctctctctct 151 ctctctcttt tacttcttct tctctttgcc ctctctttgg attttcttcc 201 ATTGATGAAC AATCAATCTC AGCTTTGAGT TCTCCCAAAT CCTCTATTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.003 +strand -73 : -64 GCACATAaGT AC RSP00228 Mean Expected Number 0.008 +strand -87 : -76 ATCATTTTCtCT AC RSP00259 Mean Expected Number 0.003 +strand -98 : -92 TGGTTAG AC RSP00735 Mean Expected Number 0.005 +strand -91 : -84 AAAAATCA AC RSP00858 Mean Expected Number 0.002 +strand -114 : -107 GGTAATTA AC RSP01283 Mean Expected Number 0.000 -strand -44 : -60 GAGAGAGAGAGAGAGAg Totally 6 motifs of 6 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H4 |LOCUS: AT1G07660 |PROD: the same as GENE |2368946..2369730 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +263 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.34 C - 0.20 1 acggccgaaa atatatgtcc tgggtagtca cttcctttat aaaatgttaa 51 tcccaccact tttttttttt tttttttttt ttttgtcaaa acacaacttt 101 cattcattaa ggcctcaaag cctcaagaga ggaaagttga tacaagctac 151 gataatacaa cagaaagaaa gatacaagtt aatcccacca ctttgtactc 201 GAAGTAACAT ACTTTTTACA ATCACATTTT TGAAGAACTT TCATTCCATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.002 +strand -39 : -31 AGAAAGAAA AC RSP00863 Mean Expected Number 0.000 +strand -75 : -67 AGAGAGGAA Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H2B, putative |LOCUS: AT1G07790 |PROD: the same as GENE |2412977..2413705 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.32 C - 0.22 1 gggcttcttt gtcacgacca ttgaagccta tcaaagctat aacttgaacc 51 tgtaaaaatg aatgatgttt ctctcagccg tcagatctaa tttgagcatt 101 gataaattta acgaatgaga aatatacacg TCAATgatcc tcgtgaagat 151 ttctatccaa tagaatacgt ttgttccttc tctataaaat ctaaactatt 201 ATCACCATTC ACCACTAAAC TACTTCAATC AACTTCCTTT TCCCGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.000 -strand -55 : -65 TCACGaGGATC AC RSP00870 Mean Expected Number 0.007 +strand -150 : -141 TGTAAAAaTG AC RSP01016 Mean Expected Number 0.008 -strand -129 : -136 AGAAACAT AC RSP01092 Mean Expected Number 0.009 +strand -17 : -7 ATAaAATCTAA AC RSP01258 Mean Expected Number 0.004 -strand -68 : -75 TGACGTGT AC RSP01497 Mean Expected Number 0.001 +strand -124 : -115 GCCGTCaGAT Totally 6 motifs of 6 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G07795 |PROD: the same as GENE |2414283..2414964 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +152 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.23 T - 0.21 C - 0.19 1 accaactaat acagccgtcg attaaacaaa aattgatatt gctgaaaacg 51 tgggagtgtc aaaggggacg gagacgaccc ggaagggcaa aagaagaaga 101 gaagagttca aagggaaggg caaattcgta attaacaact ctctgtgtgt 151 gtatgggaaa gaagagtagt tagttaaacg tgcaaagaag cagcctttcc 201 ATTTTCATTT CCGTTTCCAA ACACATAAAC CGCACCAATC AAACAAGCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00091 Mean Expected Number 0.001 +strand -100 : -89 GAAGaGTTCAAA AC RSP00808 Mean Expected Number 0.009 +strand -32 : -26 GTTAGTT AC RSP01020 Mean Expected Number 0.007 -strand +8 : +2 ATGAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown 761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC: RSP00810 RSP00812 RSP00813 945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H4 |LOCUS: AT1G07820 |PROD: the same as GENE |complement(2421215..2421940) |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.34 C - 0.19 1 attggaagac gaatgctgtt tttgttttgt ttttcaataa aacaacatct 51 ttcaattaaa ttgggagcaa tccacgtcat cgatccgtca agtattgtta 101 acgatgtata accATTGGat cagtaatcaa cggttgatat gaaaaatcac 151 acggatcaac gcagttttat atattaagac attagttagc cacttcatat 201 CCGTCAAATT CAATTGATCC TCTCTCCAAA TCATCTTAAA AGTATCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.002 -strand -122 : -129 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -129 : -122 CCACGTCA AC RSP00232 Mean Expected Number 0.008 +strand -127 : -118 ACGTCATcGA AC RSP00242 Mean Expected Number 0.000 -strand -80 : -92 gATCCAATGGTTA AC RSP00272 Mean Expected Number 0.000 +strand -54 : -44 TCACaCGGATC AC RSP00548 Mean Expected Number 0.001 +strand -93 : -83 aTAACCATTGG AC RSP00836 Mean Expected Number 0.001 +strand -51 : -44 CACGGATC AC RSP00847 Mean Expected Number 0.005 +strand -129 : -120 CCACgTCATC AC RSP00913 Mean Expected Number 0.003 -strand -120 : -129 GATGACgTGG AC RSP00914 Mean Expected Number 0.006 -strand +35 : +26 GATGATtTGG AC RSP00915 Mean Expected Number 0.004 -strand +35 : +26 GATGATtTGG AC RSP00915 Mean Expected Number 0.004 -strand -120 : -129 GATGAcGTGG AC RSP00916 Mean Expected Number 0.003 -strand -120 : -129 GATGACGTGg AC RSP00996 Mean Expected Number 0.003 +strand -68 : -59 GTTGATATGA AC RSP00997 Mean Expected Number 0.003 -strand -120 : -129 GATGACGTGg AC RSP01065 Mean Expected Number 0.001 -strand -114 : -124 cGGATCGATGA AC RSP01275 Mean Expected Number 0.004 +strand -130 : -121 TCCACGTCAT AC RSP01507 Mean Expected Number 0.001 -strand -44 : -51 GATCCGTG AC RSP01734 Mean Expected Number 0.009 +strand -130 : -124 TCCACGT Totally 19 motifs of 18 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 235. Group TF: LFU /AC: RSP00242//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: AG1 /TF: LFU 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: APX1 |LOCUS: AT1G07890 |PROD: L-ascorbate peroxidase 1, cytosolic (APX1) |2437327..2439662 |SUPPORT | 8 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +675 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.33 C - 0.24 1 agtcctctga tgcctaattt cgtcaattta ctgaagaaaa ttcaacatca 51 acgccctttt tgataatttc cccaaagtta gtgggccctc cacacgaagc 101 atgtatcctC CAATtgcata ttgccaatta tttcctaata atattgaagg 151 attattcttt tcccatctat ataccaccaa ccctaagatc cgaacgtcca 201 TTTTAAAGCC GTGCGTTTAA TCATGATCGT CAATTATATT GGCAAATTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01312 Mean Expected Number 0.000 +strand -76 : -62 CAATTATTTCCTAAT AC RSP01351 Mean Expected Number 0.000 +strand -120 : -110 gTGGGCCCTCC AC RSP01687 Mean Expected Number 0.006 -strand +11 : +5 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 1205. Group RE: Regulatory Motif 2 /AC: RSP01312//OS: Glycine max /GENE: 11S A2B1a/RE: Regulatory Motif 2 /TF: unknown 1233. Group TF: CPRF1 /AC: RSP01351//OS: Arabidopsis thaliana /GENE: APX1/RE: DNase I footprint /TF: CPRF1 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G07950 |PROD: the same as GENE |complement(2465772..2467014) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.31 C - 0.22 1 cttaccttct gcaacaccaa ttccgagagc agaagaaaga gaggaatgtc 51 aaagcatgtt tggttttaga aagttaagtc ccctaataat aataacttaa 101 aacacaaata cgtaagccca ttactttagg cCCAATacta acatcatgct 151 cctttttttg ttgggtggat cttcttccca tagccatcag cttcttttac 201 TTTCTTCGTT TCTTTGCAAA AGACCAGCGA TAATTATGAA CAAAGGCGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 +strand -167 : -159 AGAAAGAGA AC RSP00863 Mean Expected Number 0.001 +strand -163 : -155 AGAGAGGAA AC RSP00961 Mean Expected Number 0.004 +strand +15 : +22 TGCAAAAG AC RSP01033 Mean Expected Number 0.005 +strand -50 : -41 CCTTTTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AXS2 |LOCUS: AT1G08200 |PROD: expressed protein |complement(2573857..2576709) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.35 C - 0.18 1 aattgaaact atatactgta gttgtaatct actagtttta aaatagattt 51 cacgtgaaca atcagcagat tcataataat tgacttaaga gagaatatga 101 cacgtaacga aaacattaat ttcacgtggt gggagtaatg tgcaaggctg 151 tgagagtgta gggaacatta ttatacgcct ttaaatatcc atctctcatt 201 TCTTTCTTTC TTTTCTCCCA TTCTCACAAA TCTCTCTTCC ACCCATTGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.002 -strand -95 : -102 TACGTGTC AC RSP00122 Mean Expected Number 0.002 -strand -66 : -72 CTCCCAC AC RSP00444 Mean Expected Number 0.000 -strand +12 : -2 AAGAAAGAAAGAAA AC RSP00640 Mean Expected Number 0.001 +strand -79 : -72 TCACGTGG AC RSP00860 Mean Expected Number 0.005 -strand +11 : +3 AGAAAGAAA AC RSP00860 Mean Expected Number 0.005 -strand +7 : -2 AGAAAGAAA AC RSP00953 Mean Expected Number 0.005 -strand -119 : -127 CAATTATTA AC RSP01035 Mean Expected Number 0.007 -strand -96 : -102 ACGTGTC AC RSP01261 Mean Expected Number 0.004 -strand -94 : -101 TTACGTGT AC RSP01449 Mean Expected Number 0.000 +strand -80 : -68 TtCACGTGGTGGG Totally 10 motifs of 9 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1321. Group TF: OsIRO2 /AC: RSP01449//OS: Oryza sativa /GENE: OsNAS1/RE: OsNAS1-OsIRO2-BS /TF: OsIRO2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: armadillo/beta-catenin repeat family protein |LOCUS: AT1G08315 |PROD: the same as GENE |complement(2620334..2621542) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.32 C - 0.16 1 cctgaatcct ggataaagaa gtacaattct ggtataaaaa gacaaagttg 51 tacctttttg ttgacgaaag aaaaaagtta agacctttaa ttcccactta 101 gatgaattaT CAATgactct ttcattcttg tttactcttt aatacaatta 151 atacaagtgg cttgttcaac aaaaagtcgt aactccatca tccaataaac 201 GATAATTAGG GTTTGAAGAT AAAGATAAAA AACAGAGAAT TGTTCTCTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 -strand -40 : -49 GCCACTTGTa AC RSP00279 Mean Expected Number 0.001 +strand +6 : +14 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +14 : +6 AAACCCTAA AC RSP00522 Mean Expected Number 0.005 -strand -41 : -47 CCACTTG AC RSP01303 Mean Expected Number 0.002 -strand +15 : +6 cAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G08380 |PROD: the same as GENE |complement(2640858..2641825) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.10 T - 0.29 C - 0.15 1 attaaaatca ttaacatgca aactaaaaga tgtaaaaatc tttataaaat 51 acaaacaaaa aaaataaaca aattttgaga caaaaaataa atctggaatc 101 aatcttatcc aagaaataga cccACAATat caaagaaaat aatgaggtgt 151 cacaaagcta ttgattgata acacatcctc gaaatctctc tctttgtcca 201 CAGAATAAAA ATCTATTTCT TGTGTTTGTG TTGTATTTAC TTAAAAAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 +strand +34 : +44 TATTTaCTTAA AC RSP00864 Mean Expected Number 0.000 -strand -8 : -16 AGAGAGAGA AC RSP01136 Mean Expected Number 0.010 +strand -53 : -47 TGTCACA AC RSP01520 Mean Expected Number 0.010 -strand -53 : -58 ACCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1371. Group TF: HBP-1a /AC: RSP01520//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Hex123-a /TF: HBP-1a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: plastocyanin-like domain-containing protein |LOCUS: AT1G08500 |PROD: the same as GENE |2689057..2690048 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.29 C - 0.21 1 gagatcacat ggggaagagc aaagaggcgt tgtcatttga ttggaccgac 51 cacttcgtat cgtctcatgt tccttcgcat ccccaagaat tgtccacatg 101 tcacactcac acatgtcttg gttttatatg cagTCAATga cgagctcatt 151 attactttat gtacagtttc ttatgccttt ctttattaca aagaaagatc 201 AATCAACGAA TCACAATTTA TAATCAAGAA AAACGGACAA GAGAGTAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.004 +strand -108 : -99 TCCACaTGTC AC RSP00613 Mean Expected Number 0.009 +strand +23 : +30 ATCAAGAA AC RSP01598 Mean Expected Number 0.006 +strand -170 : -163 TGTCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G08640 |PROD: the same as GENE |complement(2748430..2751281) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.27 C - 0.24 1 aactaataaa gacactggat tgggccgata aatcagttgg gctgaagaaa 51 gcaggccgtc tttattatta cctaattcgt tcacgatgga ggtcgaaccg 101 agaatatccc cctccggagg cgagcgcctt atccATTGGg ccacgcgaac 151 tattggtcag gcctcagttt ttagccttaa caaactattg agtattgaat 201 GATTAGCTTC CAAACATCAA TCACCAACCT TCTAGTTTCC TTTTAACCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01460 Mean Expected Number 0.000 +strand -66 : -56 ATTGGGCCACG Totally 1 motifs of 1 different REs have been found Description of REs found 1330. Group RE: ERSE-II /AC: RSP01460//OS: Glycine max /GENE: BiP9/RE: ERSE-II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: presenilin family protein |LOCUS: AT1G08700 |PROD: the same as GENE |complement(2769818..2771480) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.33 C - 0.16 1 aatccagttt aatccactcc ggtccgacct gaaaatcgaa acatttgatc 51 ccgaaaccga attttatttt taatatatta aatagatata cttttaaaaa 101 agtagctttg tttgtagttA TTGGgcctaa tgggctgtta ttgttgtacc 151 gttatttgcc cttttgggct ttaaatgata tatcgtaggt cgacacaaac 201 AAAATAAAAT ATTGGCATAG ACGAGCTGCT GGTCAGAAGA AGACTCAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01214 Mean Expected Number 0.002 +strand -42 : -33 CCCTTTTGGG AC RSP01678 Mean Expected Number 0.005 +strand +2 : +13 aAATAAAATATT Totally 2 motifs of 2 different REs have been found Description of REs found 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: prenylated rab acceptor (PRA1) family protein |LOCUS: AT1G08770 |PROD: the same as GENE |2808886..2809747 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.30 C - 0.19 1 cacaattctg taattttaca aaaactatga cgattcatga ttatgtggaa 51 atagaggcga tcggtaaaag ttgatttgtt tatggtttat ttgtaataat 101 aaaaaaacta caaggtccca aaagaaaata ataatcaccg aacaagtccc 151 tcccatcatc ccatattcca catggactct ttgaaatcca aggttttgcc 201 ATTTGACCAC AGATTTGTGT TATTTTCAAA CACAAAATCA ACCAATTCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.006 +strand +40 : +49 AACCAATtCC AC RSP00750 Mean Expected Number 0.006 -strand -177 : -188 TTtTTGTAAAAT AC RSP01600 Mean Expected Number 0.009 -strand -15 : -22 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: prefoldin, putative |LOCUS: AT1G08780 |PROD: the same as GENE |complement(2809783..2811194) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.23 C - 0.22 1 ttaaacatgt tagtatgtta caaaatttac gaatcaataa cgaaataagc 51 aaaataacca attccaagcc aagtgggaca aactcgaccg aaaagaccaa 101 aaaTCAATca taatttggta tcaaaaccat tataccggga agtaccagaa 151 taactcggtt gggcctagcc tctaataaaa atcggtcggg aaagaaactc 201 ACAACTCTCT CTCACACAGC AACGTTCTAT TGAAATTTGG CCTGAATCCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.007 -strand -125 : -131 CCACTTG AC RSP00683 Mean Expected Number 0.004 +strand -133 : -124 GCCAAGTGGg AC RSP01250 Mean Expected Number 0.010 -strand +38 : +29 AAAtTTCAAT Totally 3 motifs of 3 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CSD1 |LOCUS: AT1G08830 |PROD: |2827089..2829260 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +614 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.27 C - 0.18 1 cgtaatttaa attcaatgac gatgacttaa acttaatgtt ttacagtatt 51 tatccaatca aattttacca catcagcaga gaagagtcaa acttaggaaa 101 agtctatctt ggattatcct gacgtggctt ttttcaagta agaaataaat 151 taatgctaat cacgtacgta cctacccagc ttttggacct cgtgggctat 201 ATAGAAAACA AGTAACCAAA GAGAGACGAA GCAAAAACAT TCAGAGAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.009 -strand -34 : -40 GTACGTG AC RSP00113 Mean Expected Number 0.000 +strand -81 : -73 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 +strand -81 : -74 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -74 : -81 CCACGTCA AC RSP00247 Mean Expected Number 0.002 -strand -73 : -82 GCCACGTcAG AC RSP00248 Mean Expected Number 0.001 -strand -73 : -82 GCCACGTCAG AC RSP00915 Mean Expected Number 0.003 -strand -124 : -133 GCTGATGTGG AC RSP01034 Mean Expected Number 0.004 +strand -79 : -73 ACGTGGC AC RSP01094 Mean Expected Number 0.002 -strand -141 : -152 TgATTGGATAAA AC RSP01106 Mean Expected Number 0.000 -strand -71 : -81 AaGCCACGTCA AC RSP01453 Mean Expected Number 0.009 +strand -31 : -25 ACCTACC Totally 11 motifs of 11 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G09310 |PROD: the same as GENE |3009057..3009882 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.26 C - 0.22 1 tagggttggt ctcaatttga taccaaaact aataaatttg ccaaaattgt 51 atgaagtcaa aggtatcttc tcaatccgag tgtatttcac atacaattta 101 atttctaaac atggtggcat tctccgtaat aagatcagga aaccaagggc 151 aaacccacaa cacgtcagct atatatcact aggctaagtc ccttacctct 201 CCACAACACA ACTTCAGCTT TAAGACAGCT AAAACTAAAT ACAAAGAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -150 : -160 TACAaTTTTGG AC RSP00997 Mean Expected Number 0.006 -strand -32 : -41 GCTGACGTGT AC RSP01258 Mean Expected Number 0.005 -strand -34 : -41 TGACGTGT AC RSP01454 Mean Expected Number 0.002 -strand -191 : -197 ACCAACC AC RSP01602 Mean Expected Number 0.007 +strand -132 : -125 TCTCAATC Totally 5 motifs of 5 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G09330 |PROD: the same as GENE |complement(3012764..3015093) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.35 C - 0.15 1 cattgtcgtc ctcttctttc ttaactcttc ttttgccttg ttgtggatag 51 tggataattt tgatcgaaac acaagttttt gtggtgaaat cgtaattacc 101 attttttttg aataattggg cctaacttct ttaaatattA TTGGgccaga 151 gaagagttat cgggctcgtt gagaattaaa aaacacattt gaaagaaatt 201 ATCAAAAATA GAAGAAATCA CGTAGCAGAC ACGCGCAAGA GTTTTGAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.003 +strand +29 : +35 ACACGCG AC RSP00530 Mean Expected Number 0.003 +strand -186 : -175 TCTTTcTTAACT AC RSP00858 Mean Expected Number 0.007 -strand -101 : -108 GGTAATTA AC RSP01058 Mean Expected Number 0.007 +strand -153 : -146 TAGTGGAT AC RSP01469 Mean Expected Number 0.008 -strand -9 : -18 TCAaATGTGT AC RSP01559 Mean Expected Number 0.009 +strand +31 : +36 ACGCGC AC RSP01692 Mean Expected Number 0.005 -strand -133 : -140 TTCGATCA Totally 7 motifs of 7 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G09340 |PROD: the same as GENE |3015388..3018236 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.24 C - 0.18 1 aaaaatggta attacgattt caccacaaaa acttgtgttt cgatcaaaat 51 tatccactat ccacaacaag gcaaaagaag agttaagaaa gaagaggacg 101 ACAATggctg taaatatgtg accatgaaat ggcgagaggc tgagataatt 151 gtcttatccc ttcaaaattt aagactttta atgatcggaa ggaacaagat 201 GACGAGGTCC CACGAACCAC CATACACACT TCAATTTCAA ATAAGAGCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.008 -strand -109 : -120 TCTTTcTTAACT AC RSP00858 Mean Expected Number 0.007 +strand -194 : -187 GGTAATTA AC RSP01058 Mean Expected Number 0.005 -strand -142 : -149 TAGTGGAT AC RSP01599 Mean Expected Number 0.009 +strand +35 : +42 TTTCAAAT AC RSP01692 Mean Expected Number 0.003 +strand -162 : -155 TTCGATCA Totally 5 motifs of 5 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATRAB11C |LOCUS: AT1G09630 |PROD: Ras-related GTP-binding protein, putative |complement(3118205..3119710) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.37 C - 0.13 1 gaagaagtag ggtttttaaa atctgtattg agtgtattcc tctggtttgg 51 ctcggttttg tttggtttta tttctgattt ttgtttattt tccggttaag 101 ctctaattac tttccctttt attagcatgt ataaatgaat tacatatatg 151 taggcttttt tagtaagccc aacttgacaa gaaaaggtct tcgtcgttgg 201 GCAATAACAA GCCGAGAAGG TTGAATAGAG AAGATCCAAG GGGAAAGAGA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: chloroplast nucleoid DNA-binding protein-related |LOCUS: AT1G09750 |PROD: the same as GENE |3157503..3159147 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.25 C - 0.23 1 gaaaaatatt ataccatttt atctcacaca catgcgaaga agatgtgtag 51 acaatagaaa aaaaaagttt acggagtagt agtactattg ccagatagac 101 cggaccggat cccaCCAATt ataaatcgaa ttcgagggac attttcgcat 151 tttcaatacc tcgctggcca tatataaagg ccacatcaca ctcgaagaac 201 ATTATCTAAA TATCTCTACA CAATCACATT AGCCAAAACC ATGGCCTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01167 Mean Expected Number 0.004 +strand +7 : +15 TAAATATCT AC RSP01237 Mean Expected Number 0.008 -strand -22 : -31 CTtTATATAT Totally 2 motifs of 2 different REs have been found Description of REs found 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 2 |LOCUS: AT1G09780 |PROD: the same as GENE |complement(3165372..3167871) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.30 C - 0.22 1 ttgttttttt cctaaacata taaataacaa aatggcatgt gtcatcacaa 51 tgtaaaatct cataagaaaa ataaggaaaa agaatattcg gagccaataa 101 gaattttata tttacgtgag agacaagtgg cCCAATtgac gggcccatat 151 tgcaaaaacg cctcttttta aaacccgcct cttccttcac accaaccttc 201 ACTTTTCTCT CAGATCTGCT TTGAGATTCT CCGATTGCAT CTCAAAAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 -strand -70 : -79 GCCACTTGTC AC RSP00522 Mean Expected Number 0.005 -strand -71 : -77 CCACTTG AC RSP01463 Mean Expected Number 0.003 -strand -176 : -188 ATTTATATgTTTA AC RSP01641 Mean Expected Number 0.005 -strand -73 : -82 aCTTGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: TRAF-type zinc finger-related |LOCUS: AT1G09920 |PROD: the same as GENE |complement(3224686..3227068) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.33 C - 0.13 1 gtttacgtga aaaaccttat atatctaaat tagtggaaaa tataagatta 51 tacaagtaat gcaaaaactc taaacaaggt acagtatttg taatgtggcg 101 cgtggacgag aaggaagtag aggagcgtgg gttaTCAATt tggattgacg 151 ccaaaaaaaa aagtgattca ttaatctgag agtttggttc aaccatattc 201 ATCAATTTTT CTTTATTTTA TTCACTAATA ATAATTTTGA GTCTCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00985 Mean Expected Number 0.010 +strand -20 : -11 AGTTtGGTTC AC RSP01087 Mean Expected Number 0.003 -strand -117 : -124 CTGTACCT AC RSP01559 Mean Expected Number 0.008 -strand -98 : -103 ACGCGC Totally 3 motifs of 3 different REs have been found Description of REs found 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G09995 |PROD: the same as GENE |complement(3262267..3263614) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.31 C - 0.18 1 acaatccgtt ggtgaaaact tagagcaagt caagtaaggg tttttagtag 51 atttcttaga tgggttttta tgtaaaaatg ggcccagata atagaaaaac 101 agctgaatcc atttaggatc gttcctaaaa ttagtttttc gcgacCCAAT 151 agaaactcat acgtgacctc attttattgg gtaaactgaa tgacaaaacc 201 AAAAAAAAAA AACCACACGC GTTTATTTAT TTCTTCTTCT TCTTCTTCGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.005 +strand +15 : +21 ACACGCG AC RSP00713 Mean Expected Number 0.008 +strand -101 : -95 CAGCTGA AC RSP00716 Mean Expected Number 0.002 +strand -7 : +2 CAAAACCAA Totally 3 motifs of 3 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: integral membrane family protein |LOCUS: AT1G10030 |PROD: the same as GENE |3273863..3275839 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.31 C - 0.20 1 cagaatatta cagaagccca attgaaaagc ccatttgaaa cccactgaat 51 taaataataa tcgaattcgg cggagactcc aactattgtc ggcccatcaa 101 acagtttctc cggtggtttg agaactaact gaaatgtacg aaattaacct 151 ccgtggctta cgtgttctga tcggggaatc tttccgccga atctgagttt 201 ACGTTTTTTT TTGGTGTCAG TCTCATAGTT TTCTGGTTTT AAAACGGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00940 Mean Expected Number 0.007 +strand -95 : -86 TTCTcCGGTG AC RSP01086 Mean Expected Number 0.008 +strand -3 : +7 TTTACGTTTt AC RSP01261 Mean Expected Number 0.005 +strand -43 : -36 TTACGTGT AC RSP01720 Mean Expected Number 0.001 -strand +8 : -4 AAAaACGTAAAC Totally 4 motifs of 4 different REs have been found Description of REs found 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G10090 |PROD: the same as GENE |complement(3290059..3296181) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +908 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.30 C - 0.22 1 tcgtatcgct ttacaaaaat ctaacggtca taatttcgcc gacaaggtag 51 tcactatcac aggctaaaaa gacctttgcc gacgagatat tagtttgggc 101 cattcacgtt atgccacgtc acatgatctg gcgattccac atttacacca 151 acgtggagaa ttttgcccaa tgattttttt cagttatctt tccgtctaga 201 GAAATATCCT CACCAAAATA ATAACATGTA ATGTGTATAC AGTATACCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -80 : -88 TGACGTGGC AC RSP00214 Mean Expected Number 0.003 -strand -80 : -87 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -87 : -80 CCACGTCA AC RSP00248 Mean Expected Number 0.003 +strand -88 : -79 GCCACGTCAc AC RSP00735 Mean Expected Number 0.010 -strand -23 : -30 AAAAATCA AC RSP00888 Mean Expected Number 0.004 +strand -186 : -178 AAAAATCTA AC RSP01034 Mean Expected Number 0.007 -strand -82 : -88 ACGTGGC AC RSP01106 Mean Expected Number 0.000 +strand -90 : -80 AtGCCACGTCA AC RSP01280 Mean Expected Number 0.001 -strand -78 : -88 tGTGACGTGGC AC RSP01656 Mean Expected Number 0.000 -strand -78 : -89 TgTGACGTGGCA AC RSP01734 Mean Expected Number 0.007 -strand -44 : -50 TCCACGT Totally 11 motifs of 11 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, similar to EST gb|AA598098 |LOCUS: AT1G10140 |PROD: the same as GENE |complement(3322804..3323550) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.05 T - 0.31 C - 0.25 1 ttaatcaatg ggaccttgtg gactgctctc tccaacactc tttcgactat 51 tattttcgta aaatcaactt ttttgaataa atatctaaac aaatccttaa 101 agtcacgttt gattctcTCA ATtatttctc ctttaacact cttttaaaca 151 ttattatata tttaaaaccc ttaaaaacca caccacactc caaaaaaatc 201 AAACCCACCA TTCAAACAAA ACACAAAAAC AACAAAAAAA CCATTTCCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00635 Mean Expected Number 0.000 -strand -186 : -193 GGTCCCAT AC RSP01091 Mean Expected Number 0.005 -strand -83 : -93 AgAGAATCAAA AC RSP01679 Mean Expected Number 0.000 -strand -91 : -102 AAACGTGaCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1497. Group RE: JRE (Qualt. Seq.) /AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Qualt. Seq.) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPP2-A10 |LOCUS: AT1G10150 |PROD: expressed protein, similar to ESTs gb|T20511 |3325826..3327616 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +336 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.40 C - 0.16 1 aaataccgac gtcatcaaat tacctatata aatcctttta tatttattta 51 gttgaatttt tttttggtca ataaactatt aaataattta ctttcaaaga 101 taaataattt tcaaACAATt aaaaaaatat ttattaaaaa aatccaaatt 151 atttttttcg ttattgagga ggaggttcat ttatccaatc aaaaccgaac 201 CGTTTTGTTG TTTATCCAAC TTGTCATTCA TCGATGTCTC TCTCTTCCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00071 Mean Expected Number 0.007 +strand -193 : -188 GACGTC AC RSP00071 Mean Expected Number 0.007 -strand -188 : -193 GACGTC AC RSP00864 Mean Expected Number 0.001 -strand +45 : +37 AGAGAGAGA AC RSP01600 Mean Expected Number 0.010 +strand -109 : -102 TTTCAAAG AC RSP01640 Mean Expected Number 0.006 +strand +32 : +41 CgATGTCTCT AC RSP01703 Mean Expected Number 0.000 +strand -195 : -186 CCGACGTCAT AC RSP01704 Mean Expected Number 0.000 -strand -186 : -195 ATgACGTCGG AC RSP01741 Mean Expected Number 0.000 -strand -127 : -139 TTATTGACCAAAa Totally 8 motifs of 7 different REs have been found Description of REs found 70. Group RE: C-box /Group TF: RITA-1 /AC: RSP00071//OS: Oryza sativa /GENE: rifa-7-P-glucuronidase transgene/RE: C-box /TF: RITA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown 1513. Group RE: ACGT3/DRE3 /AC: RSP01704//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT3/DRE3 /TF: unknown 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transcription factor LIM, putative |LOCUS: AT1G10200 |PROD: the same as GENE |complement(3346392..3347849) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.08 T - 0.44 C - 0.19 1 tattcgaatt tgcatccaaa attcgatact catcttgaac ttttttgttt 51 gtgacatttt attaaaaatt tcaatttttc ctaaaagaat tttactttaa 101 atatttaaaa agaagaagca tgttcatttt TCAATatatc tggtccccat 151 attaaaacaa gcaacaataa ttgacaatct ctttctttca tcttcatctt 201 ATTCTTCTTT ATCTCTCTCT CTCTCTCAAG ACTATTGAGC TTCTTTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00288 Mean Expected Number 0.009 +strand -60 : -55 TGGTCC AC RSP00792 Mean Expected Number 0.002 +strand -44 : -35 aCAAGCAACA AC RSP00864 Mean Expected Number 0.005 -strand +26 : +18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +22 : +14 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +20 : +12 AGAGAGAGA AC RSP00872 Mean Expected Number 0.003 +strand -153 : -144 TtTGTGACAT AC RSP01060 Mean Expected Number 0.006 +strand -36 : -28 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand -28 : -36 CAATTATTG AC RSP01077 Mean Expected Number 0.002 +strand -36 : -28 CAATAATTG AC RSP01136 Mean Expected Number 0.005 -strand -145 : -151 TGTCACA AC RSP01283 Mean Expected Number 0.000 -strand +27 : +11 GAGAGAGAGAGAGAGAt AC RSP01283 Mean Expected Number 0.000 -strand +25 : +9 GAGAGAGAGAGAGAtAA Totally 13 motifs of 8 different REs have been found Description of REs found 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G10310 |PROD: the same as GENE |complement(3381605..3383916) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.33 C - 0.11 1 ctgtaaatat tttagtttga tctacttata tattaaaaga gatttttggt 51 aaaaatcgaa ttgagtttta taacagttaa aaaagtataa tttggtaata 101 caccttggca acataataag aattttaata ctagttatgc taaggtaaat 151 aaatgaaata aaaaagtctg tatgtataca tattcttcgc ggcacatttt 201 GTCATTTTGA GACGAGAGAA AGAGAAGGTA ATCGGCCACG ATGACGATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 +strand +17 : +25 AGAAAGAGA AC RSP01598 Mean Expected Number 0.007 +strand -1 : +7 TGTCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DNAJ heat shock protein, putative |LOCUS: AT1G10350 |PROD: the same as GENE |complement(3393409..3395057) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +195 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.35 C - 0.20 1 aacttctgat taagcaatca agagaatttt tgtctaataa aaaaagaggg 51 ggatatgaaa atgatagtga tcaaattttt taccattcac cacaaagatg 101 aagttaaaga taaagtaata ataaatgcca cgtggctcca ttaagaacaa 151 ttttctcatt ctcctttgtc atgttcttct tctaccttac acgcactcca 201 CTCTTCGTTT CCTTTTTCTC TCTTCCAATT TCAGATTTTA CTGGCAAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.000 +strand -74 : -65 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.000 -strand -65 : -74 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -74 : -65 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -65 : -74 GCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -73 : -64 CCACGTGGCt AC RSP00153 Mean Expected Number 0.000 -strand -66 : -75 CCACGTGGCa AC RSP00175 Mean Expected Number 0.000 +strand -72 : -65 CACGTGGC AC RSP00175 Mean Expected Number 0.000 -strand -67 : -74 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -74 : -65 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -65 : -74 GcCACGTGGC AC RSP00682 Mean Expected Number 0.001 +strand -74 : -65 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -65 : -74 GCCACGTGGc AC RSP00718 Mean Expected Number 0.000 +strand -73 : -66 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -66 : -73 CCACGTGG AC RSP00748 Mean Expected Number 0.001 -strand -113 : -124 GAATGGTAAaAA AC RSP01034 Mean Expected Number 0.002 +strand -71 : -65 ACGTGGC AC RSP01034 Mean Expected Number 0.003 -strand -68 : -74 ACGTGGC AC RSP01105 Mean Expected Number 0.003 -strand -149 : -154 CCCCCT AC RSP01726 Mean Expected Number 0.000 +strand -75 : -64 TGCCACGTGGcT Totally 19 motifs of 11 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: BSD domain-containing protein |LOCUS: AT1G10720 |PROD: the same as GENE |3562953..3564760 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.33 C - 0.08 1 aaaaatatat attttatagg tgttagataa tccaattaca gttgccacca 51 aaaaatatgg aatttaaaac taaattacaa gtatatgata tttaatttgg 101 atggggtttg ttaggaaaag ataaaataat ttgcatagtt ttagtttttg 151 agtcaaccaa atggatcaat agattaattg agaaaaagaa aagaaaaaag 201 AAATCAATCA TAATGTTTTC GAATTTTTTG GAAAGCTTAT ACGATGGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.008 -strand -69 : -82 AAATTATTTTATcT AC RSP00187 Mean Expected Number 0.004 +strand -156 : -152 CCACC AC RSP00431 Mean Expected Number 0.007 +strand -167 : -156 AATtACAGTTGC AC RSP01185 Mean Expected Number 0.001 -strand -87 : -98 CtAACAAACCCC Totally 4 motifs of 4 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: sodium symporter-related |LOCUS: AT1G10830 |PROD: the same as GENE |complement(3605590..3607494) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.36 C - 0.16 1 gatttatctt gtattggacc tctgattgcc ttacaacaaa ttatacatag 51 ttatcaaaat cctaatcaaa agagtaaaaa atctaattta tagagatttt 101 attatagttg tagtgttagt tccatcgcta aatcccttga acgacaacgt 151 ttattatttc ttcttcggac gattgtttga agaaatttaa aaacgacatc 201 TTTTTATTAC TTCCTCTTCG AAAGATTGTT TACCAACAAG AACAATGGCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 +strand -132 : -121 AAAgAGTAAAAA AC RSP00628 Mean Expected Number 0.009 -strand +30 : +23 AACAATCT AC RSP00888 Mean Expected Number 0.007 +strand -124 : -116 AAAAATCTA AC RSP01621 Mean Expected Number 0.008 -strand -125 : -134 TACtCTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: TIF3H1 |LOCUS: AT1G10840 |PROD: |complement(3607632..3610521) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.38 C - 0.17 1 tcttactaag ttttgactag ttggttagtg taatgggccc atgctattaa 51 attaaatgtt caatattttg aggaatatta tggtcctggc cttttacaag 101 agaatagcat tataggtcca tgggctgggt ccatccttat tataggtcgg 151 aaaacattta gggatcattc tataagaatc tcaaatttta gggctctttt 201 GCAATTTTAA CTGCGAAACG CTTTTTTTTT TTCCTCTCTA CACCCAAATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.001 -strand +39 : +31 AGAGAGGAA AC RSP00961 Mean Expected Number 0.007 -strand +3 : -5 TGCAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ASK1 |LOCUS: AT1G10940 |PROD: serine/threonine protein kinase, putative |complement(3655777..3658578) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +408 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.30 C - 0.14 1 cactcgtgtc gtgtaaatag tgtatagttg aagtgttgaa ttagggagaa 51 aaaaagcgcg ttggtgacaa aaaaaaacgt agttatacac tcgaatcagc 101 aagggaaaca aacatgtatg gatcgcatgg aaacttgtgg gtccctcttt 151 cttttaaaaa atctcgtatt aattaaataa atggaaaaaa aaacatgatg 201 GGAGTTTGTT TAGGCAGGGG AGATTCTTCT TCATTCTCAT CATTATTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 -strand -67 : -75 GTTTCCATG AC RSP00534 Mean Expected Number 0.001 -strand +46 : +34 ATAATGATGAgAA Totally 2 motifs of 2 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: BFN1 |LOCUS: AT1G11190 |PROD: bifunctional nuclease (BFN1) |complement(3750066..3752780) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.39 C - 0.18 1 gctttaacta ataaattgac gactctttca tcttatgttt atactcgtgt 51 tctttttgtc aacttttatg aggaacgtat gagactcgca atgtcttgct 101 tgcacacaaa ctcaacatca tatatgttgc ttccggttaa cctaacttgt 151 aagtccattc ttgtctctct atttataatc tctctgtgtg ttttcttttc 201 AAATTCGATG AGGTTGTTAT AGACAAGAGA AGACATTTTT ATACAAAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.007 +strand -62 : -53 AACCTAACtT AC RSP00250 Mean Expected Number 0.001 -strand -51 : -63 AcAAGTTAGGTTA AC RSP00847 Mean Expected Number 0.001 -strand +16 : +7 CaACCTCATC AC RSP00985 Mean Expected Number 0.006 -strand -54 : -63 AGTTAGGTTa AC RSP01641 Mean Expected Number 0.001 +strand -42 : -33 TCTTGTCTCT AC RSP01641 Mean Expected Number 0.001 -strand +28 : +19 TCTTGTCTaT AC RSP01642 Mean Expected Number 0.004 -strand +38 : +29 AAATGTCTtC Totally 7 motifs of 6 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 243. Group TF: Myb26 /AC: RSP00250//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb2 /TF: Myb26 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G11200 |PROD: the same as GENE |3753365..3755638 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +531 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.29 C - 0.19 1 ttttgtttta atgaataacc aaatttcaat tcggttcgaa cttttaaacg 51 gaaaaccaaa ccggccggca aataacgacg gaggacttgg gtatatttct 101 tggtcgcaaa gaggactcgg ctgattttga accggTCAAT gatgaacaga 151 ttctggtcaa aaaaacaatt cttttaatca aacaaatcta taccattgat 201 GAATCGTACA ATAACAAACA ACTCGGTGAA GTTCTCTACC TGAATCGTCT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G11240 |PROD: the same as GENE |complement(3766754..3768294) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.35 C - 0.21 1 aaggtttatt ttgttttgtt agaaacgaga gacacaagcc acttttggta 51 attgtccaaa tttagtcaat ggcataactt tttcttaacc aaattagctc 101 catttagtca aagACAATat tacccttata atgggccaag ccttaaagcc 151 taaagcccaa ttaaaaggcc attttttctg cttcctgctt cttcttcttc 201 ATAGGCTTGT TTTGATTAAA CCTCGCAAAA CCTAATTTTT GACCTGAACC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MLO2 |LOCUS: AT1G11310 |PROD: |complement(3800747..3804144) |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +274 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.28 C - 0.17 1 ttattttatt ctgaaaatct aacgagctga aaccaaaatg ttatagattt 51 aaaatagaaa caaaacaccg atgattgacc caataaaaag caaaataaag 101 tagaccaaaa agaataatgg ttatgctgat aATTGAggag tcgtcgtcac 151 tcgtcacatg agaggaacaa caagaaaagt caaaacgttg aagctttctc 201 GAATAACGCC TTCTTTAGTT TACAGTCTCT CGTTGCGGGT CTTATCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.001 -strand +48 : +40 AAGATAAGA AC RSP00574 Mean Expected Number 0.005 -strand -188 : -195 CAGAATAA AC RSP01475 Mean Expected Number 0.002 +strand -168 : -160 CCAAAATGT Totally 3 motifs of 3 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G11400 |PROD: the same as GENE |3837821..3840207 |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +956 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.35 C - 0.16 1 acgtgtgaca ttgtcaaacc aaggaatgat gtgaacataa aaagccttaa 51 tgtcggtcta aaagacagct tgtcgtcaaa attaaaatgt tcattccaaa 101 gttttttatt ttgtctccct aagtatttat taacttgtct aattttgatt 151 ttgattggtc cacatatctt tttaatttta tactttagaa agaagaagaa 201 ACAGAATACA CAAAACATAG TTAAACCACA TTAAGCTGTC TCGATCCCAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.004 +strand -132 : -123 CTTGTCGTCA AC RSP00231 Mean Expected Number 0.010 -strand -43 : -49 CCAATCA AC RSP00872 Mean Expected Number 0.007 +strand -199 : -190 cGTGTGACAT AC RSP00969 Mean Expected Number 0.001 -strand -122 : -131 tTGACGACAA AC RSP01460 Mean Expected Number 0.000 +strand -47 : -37 ATTGGTCCACA AC RSP01465 Mean Expected Number 0.000 +strand -47 : -37 ATTGGTCCACA Totally 6 motifs of 6 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1330. Group RE: ERSE-II /AC: RSP01460//OS: Glycine max /GENE: BiP9/RE: ERSE-II /TF: unknown 1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: plastid developmental protein DAG, putative |LOCUS: AT1G11430 |PROD: the same as GENE |3847250..3849162 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.37 C - 0.20 1 cacatcgggg aaagtgtgtt ttcttttttt ctttcccaat ttacttttct 51 ttttttttgg cgcttgaaat tatgagaaaa tgatttaaga aattatcagg 101 cccaaactat ctaatgggcc taattaaaaa cggtgtcgtt tcataggatc 151 ctcatcacga agcaggtaag taaaaatata tcttatcttc tccaaaactc 201 TCTCTTCGAT TTCAGCAATT GCAATGGCTT CCTTCACAAC AACTTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand -136 : -126 TGAAATTaTGA AC RSP00120 Mean Expected Number 0.000 -strand -60 : -73 AAACGACACCGTTT AC RSP00227 Mean Expected Number 0.007 -strand -12 : -20 AAGATAAGA AC RSP00891 Mean Expected Number 0.006 +strand -28 : -20 AAAATATAT AC RSP01053 Mean Expected Number 0.006 -strand -14 : -22 GATAAGATA Totally 5 motifs of 5 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DNA-directed RNA polymerase II, putative |LOCUS: AT1G11475 |PROD: the same as GENE |3862399..3864030 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.30 C - 0.21 1 aaactcttta agaacgtatc tttcagtttt ccatcacaaa ttttcttaca 51 agctacaaaa atcgaactat atataactga accgaattta aaccggaggg 101 agggtttgac tttggtcaat cacatttCCA ATgataccgt cgtttggttt 151 ggggaagcct cgtcgtacaa atacgacgtc gtttaaggaa agccctcctt 201 AACCCCAGTT ATAAGCTCAA AGTTGTACTT GACCTTTTTA AAGAAGCACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01210 Mean Expected Number 0.009 +strand +34 : +43 CTTTTTAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: thioredoxin family protein |LOCUS: AT1G11530 |PROD: the same as GENE |3874437..3875484 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.38 C - 0.18 1 accaatgaaa ttcctctaaa cattaacatt gcatatagtc ataaaaaaaa 51 tatctatttt ctttttggtt ctctttttaa tatagctttc ttggtcaaca 101 cttattctta aatatcttag aaattaataa attatttcgt aactcgttga 151 aagataactg gccacacttt ttgtgtatga ctcagacata gtttttgtcc 201 ACTCGGTCCC ATCATGCAAG TAGATAAACA CTGAATCACC AAATCTTGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00635 Mean Expected Number 0.001 +strand +5 : +12 GGTCCCAT AC RSP01470 Mean Expected Number 0.008 +strand +12 : +21 TCATGCAaGT Totally 2 motifs of 2 different REs have been found Description of REs found 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: xyloglucan:xyloglucosyl transferase |LOCUS: AT1G11545 |PROD: the same as GENE |complement(3878550..3880360) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.35 C - 0.21 1 tttctttaat taaacttttt catttaccct ttttgctttc ttttacaaat 51 tatcgtaaac atcattatta catgaaaatc ttagaaaaaa aaccgtatca 101 aaagtctaaa cGCAATagca tattaaaaga attattaatg gtcaaaacag 151 tcatttcccc ggtctttata ataaaagcaa gaaagctcta tactcttctc 201 ACTCACGGAA CAAGTGTAGA TTGCATTACC TCTCTCTCTC TCTCTCTTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.006 +strand -73 : -62 AGAATTATTAAt AC RSP00383 Mean Expected Number 0.007 +strand -61 : -55 GGTCAAA AC RSP00864 Mean Expected Number 0.003 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +39 : +31 AGAGAGAGA AC RSP00998 Mean Expected Number 0.001 +strand -189 : -176 AAACTTTtTCATTT AC RSP01233 Mean Expected Number 0.006 +strand -25 : -19 AGCAAGA AC RSP01283 Mean Expected Number 0.000 -strand +46 : +30 GAGAGAGAGAGAGAGAg AC RSP01621 Mean Expected Number 0.006 -strand -93 : -102 TAgACTTTTG AC RSP01743 Mean Expected Number 0.000 -strand -53 : -65 GTTTTGACCATTa Totally 12 motifs of 8 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT1G11630 |PROD: the same as GENE |complement(3912902..3914407) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +22 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.34 C - 0.22 1 ccttaacttt ttatttaact ttttaaaaaa tatcctagat tcaatcggaa 51 ccgtccaagt tgctgactag tcataaaatc aacggatgat atgaattatg 101 tatatgattt aagtaaaccA TTGAaattaa aaattttatt ttgtcaaacc 151 cctaaaccgg tttaaacctc ttctctctca gccgtcgtct ccatttcttc 201 GGGGAAATCA TGAACCCTAG TAATGGCGTT CCTCTTCCGC ATTCGAACAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00914 Mean Expected Number 0.001 +strand -116 : -107 GATGATATGA AC RSP01013 Mean Expected Number 0.010 -strand -4 : -13 gAAATGGAGA AC RSP01192 Mean Expected Number 0.001 -strand +20 : +11 CTAGGGTTCA AC RSP01767 Mean Expected Number 0.009 +strand -73 : -65 TAAAAATTT Totally 4 motifs of 4 different REs have been found Description of REs found 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CYP51G1 |LOCUS: AT1G11680 |PROD: obtusifoliol 14-demethylase (CYP51) |3938522..3940754 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +403 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.31 C - 0.14 1 gtaattatac catcaacgcc gttggtttta cttttgttga aataatccaa 51 tcatattact agaaaaaaac aaaattgcca catgggtgtg ttttcacttt 101 ttacttttta ctttttacag ttgaatttta tattaaggaa aaagtcgaaa 151 tgaaatagta aatcgaaaac aaaatcagag ttaaaagagt aaattcaggt 201 GAGAGAAATC AGCTTCAAGC TTAAGAGAGC TTCGAAAGCG AAAGCGACGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 -strand -85 : -96 AAAAAGTAAAAA AC RSP00021 Mean Expected Number 0.002 -strand -92 : -103 AAAAAGTAAAAA AC RSP00021 Mean Expected Number 0.002 -strand -99 : -110 AAAAAGTgAAAA AC RSP00653 Mean Expected Number 0.004 -strand +7 : -4 TTCTCTCaCCT AC RSP00879 Mean Expected Number 0.008 +strand +33 : +39 CGAAAGC AC RSP00879 Mean Expected Number 0.008 +strand +39 : +45 CGAAAGC AC RSP01601 Mean Expected Number 0.005 +strand -109 : -102 TTTCACTT Totally 7 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLPP6 |LOCUS: AT1G11750 |PROD: |3967478..3969854 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.37 C - 0.18 1 acaacatgca caacctctct ttttttgttt cctttcacaa atgcaaaacc 51 gtctctaatt ttacaaaatt aacagataca gtgggcctat tttgaatcat 101 gttaaaaata ttaagtttgt aatttgggct tATTGAatca tggatttggg 151 cttataattt ggtttgaaac cttctgagtg cacctgagtc tctgggacct 201 GTGTCACTGT TGCTGTTGCC TTGGTTGGGT TCGGTTTAAA GTTCGTGGCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.006 +strand -196 : -190 CATGCAC AC RSP00039 Mean Expected Number 0.005 -strand -156 : -166 TGcATTTGTGA AC RSP00064 Mean Expected Number 0.004 +strand +40 : +49 AGTtCGTGGC AC RSP00091 Mean Expected Number 0.001 -strand -27 : -38 GAAGGtTTCAAA AC RSP00135 Mean Expected Number 0.001 -strand -89 : -100 AATATTTTTAaC AC RSP00445 Mean Expected Number 0.003 -strand -176 : -185 AAAAAAGAGA AC RSP00880 Mean Expected Number 0.008 -strand +18 : +9 CAACaGCAAC AC RSP00943 Mean Expected Number 0.003 +strand -171 : -161 TCcTTTCACAA AC RSP01596 Mean Expected Number 0.003 -strand -161 : -171 TTGTGAAAgGA Totally 9 motifs of 9 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G11800 |PROD: the same as GENE |complement(3985224..3987289) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.35 C - 0.17 1 gtatgttttt gtttttgttg tattccccaa cagctaattc tgtcttctgg 51 tatatgggta tacttcggtt agtttcggtt tgattacggt tcacctttca 101 aatttaaacA TTGAaattgt aaaccatctt ctttgtccaa aacgatgtcg 151 tataataata acacgtagcc gttaaatgaa aaccgaagcg tcaaaaaatc 201 AAAATCGATA AAAACTAATT AGGGTAAATG TCAACAACAA TCCGATTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.010 +strand -89 : -79 TGAAATTGTaA AC RSP00751 Mean Expected Number 0.001 +strand +2 : +13 AAAtCGATAAAA AC RSP01260 Mean Expected Number 0.002 -strand -33 : -40 CTACGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGLX1 |LOCUS: AT1G11840 |PROD: lactoylglutathione lyase, putative / glyoxalase I |3995401..3997852 |SUPPORT | 9 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +643 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.30 C - 0.24 1 ctgtttcacg ccgccacgtg tcatcccatg acacggctgt tagattataa 51 ccgtaacggt cgttcaccat attttcacaa taatacactc atccatcggt 101 tgtaacgcgt ctgtgatgat ctaactatgt cacaggcagt agcaaagaca 151 ttgtcggcaa agtttctaca aactcctatt taagtgacga cgattgtgcc 201 AACAATGACT GGATTACTCA CCTACTCGAG AGTGGTTTAG CTTTTTTGTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.001 -strand -180 : -188 ACACGTGGC AC RSP00056 Mean Expected Number 0.007 +strand -188 : -179 GCCACgTGTC AC RSP00073 Mean Expected Number 0.003 +strand -188 : -179 GCCACGTGtC AC RSP00073 Mean Expected Number 0.003 -strand -179 : -188 GaCACGTGGC AC RSP00175 Mean Expected Number 0.002 -strand -181 : -188 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -179 : -188 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -178 : -189 TGACACGTGGCg AC RSP00340 Mean Expected Number 0.007 +strand -188 : -179 gCCACGTGTC AC RSP00871 Mean Expected Number 0.008 -strand +22 : +13 GGTGAGTaAT AC RSP00936 Mean Expected Number 0.000 +strand -189 : -178 cGCCACGTGTCA AC RSP01030 Mean Expected Number 0.006 -strand -34 : -41 AGAAACTT AC RSP01205 Mean Expected Number 0.007 +strand -26 : -17 CCTATTTAAG AC RSP01255 Mean Expected Number 0.003 -strand -180 : -187 ACACGTGG Totally 13 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: aspartyl protease family protein |LOCUS: AT1G11910 |PROD: the same as GENE |complement(4016789..4020916) |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1044 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.34 C - 0.24 1 ttcaatatag agatccaacg gctaataacg aaacattagc ccacacgaaa 51 tctccttttt ttttttgacg ggattataca gtgggcctcc acctgtaatt 101 gtccatttag gagacagcgc ggttaattta gcattatccc tcctcacagt 151 catctctttc ttcgcaaata aatgtaacca tctctcttct cgttttcttc 201 AACAAAAATC CTCATTTCTC TGAGAATCTG GTGCTTTAGC TTTGGTGAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00160 Mean Expected Number 0.001 +strand -130 : -119 GGATTaTACAGT AC RSP00861 Mean Expected Number 0.006 -strand -40 : -48 AGAAAGAGA AC RSP01497 Mean Expected Number 0.003 -strand -179 : -188 GCCGTtGGAT AC RSP01735 Mean Expected Number 0.001 -strand +29 : +21 AGATTCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ELP |LOCUS: AT1G12090 |PROD: |complement(4089845..4090723) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.37 C - 0.16 1 taagcaaata tgacatcaca gttataatac atttcgtatc ttcatataaa 51 caaatggaca atgtgtaaac ttccatgtac ataatttcaa ggtccctaat 101 tTCAATcatt caatcttttt tattatatat tactgtaatc aataaaatta 151 tgataatggt agtcaatcat ttatacttat tgttataaaa aaatcccatc 201 ATATATCTTA TGGATCGGAC GCTCTTGGGC TTTTCTTGAA ACCACTATAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01013 Mean Expected Number 0.003 +strand -150 : -141 CAAATGGAcA AC RSP01168 Mean Expected Number 0.000 +strand -112 : -104 AAGGTCCCT AC RSP01505 Mean Expected Number 0.000 +strand +13 : +21 GATCGGACG Totally 3 motifs of 3 different REs have been found Description of REs found 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1080. Group RE: GC element /AC: RSP01168//OS: Vicia faba /GENE: LeB4/RE: GC element /TF: Uunknown TF 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AN11 |LOCUS: AT1G12910 |PROD: flower pigmentation protein (AN11) |complement(4394899..4396289) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.41 C - 0.13 1 ggtcttttat caacaaagaa gagagattta agtttcttgt tttctataga 51 acattaaaaa gcttgactct ttctttctgt tagacaattt gtgttgtaat 101 ttttgaggat tttaaacatc tttttgttgt tcttctggtt ttatattttc 151 cgagaaaatc attggtgaag aagagacgga gataacgatg ttagccatgt 201 TACTCTGTTT TCCTTAAACG GTGTCGTTTT CGTCAATTAT TAAAATAAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand +29 : +16 AAACGACACCGTTT AC RSP00727 Mean Expected Number 0.006 +strand -140 : -134 GCTTGAC AC RSP00860 Mean Expected Number 0.008 -strand -123 : -131 AGAAAGAAA AC RSP00953 Mean Expected Number 0.006 +strand +34 : +42 CAATTATTA Totally 4 motifs of 4 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ERF1-2 |LOCUS: AT1G12920 |PROD: |complement(4396346..4398148) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +291 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.29 T - 0.24 C - 0.19 1 gaatctatga ggcaaaccaa taaacggcac gcagtttgaa ggcgtcttgg 51 taatgtagac tacagccagt tccacttttc acgtaattgg gccttttgag 101 ttaagataaa gcccattagc tcgctttcca tgtggtttgc cacgtgagta 151 tcacgtgatt gggttgggag ttagaatttg gggaaaaccc taggccagtc 201 AATTCTGGGA GGAGAGAGGC CGCCGGAGGA GAGAGAAAAA GAGGTACGAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -103 : -109 CAAAAGG AC RSP00175 Mean Expected Number 0.003 -strand -55 : -62 CACGTGGC AC RSP00247 Mean Expected Number 0.007 +strand -62 : -53 GCCACGTgAG AC RSP00248 Mean Expected Number 0.005 +strand -62 : -53 GCCACGTgAG AC RSP00640 Mean Expected Number 0.003 -strand -54 : -61 TCACGTGG AC RSP00653 Mean Expected Number 0.007 -strand +37 : +27 TTCTCTCTCCT AC RSP00740 Mean Expected Number 0.000 +strand -62 : -53 GCCACGTGAG AC RSP00752 Mean Expected Number 0.000 +strand -51 : -42 ATCACGTGAT AC RSP00752 Mean Expected Number 0.000 -strand -42 : -51 ATCACGTGAT AC RSP00865 Mean Expected Number 0.003 +strand +28 : +36 GGAGAGAGA AC RSP00978 Mean Expected Number 0.002 +strand -51 : -42 ATCACGTGaT AC RSP00978 Mean Expected Number 0.003 -strand -42 : -51 ATCACGTGaT AC RSP01034 Mean Expected Number 0.009 -strand -56 : -62 ACGTGGC AC RSP01726 Mean Expected Number 0.000 +strand -63 : -52 TGCCACGTGaGT Totally 14 motifs of 12 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 702. Group TF: G-box binding TF /AC: RSP00740//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 11 /TF: G-box binding TF 714. Group TF: G-box binding TF /AC: RSP00752//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 4 /TF: G-box binding TF 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PBE1 |LOCUS: AT1G13060 |PROD: 20S proteasome beta subunit E1 (PBE1) (PRCE) |4452269..4454872 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +370 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.37 C - 0.17 1 tactatgttt aaaaaaaaaa cttaaagaca atatttctat gaaattaata 51 aaaatgtatc ataatattga tttattatca tgtttatttc agtacaaacc 101 acagataaga aaaagtgatc ggcccattaa attgatagcC CAATatgatt 151 ttacagttta tggcccatat ttgtggtttg cccggagctc aagaaacgat 201 CTCTTTCTTC TTCTTCTCGT CGTCGTTTGT CACTTTAGAG CTACTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00160 Mean Expected Number 0.001 +strand -55 : -44 tGATTTTACAGT AC RSP00861 Mean Expected Number 0.003 -strand +8 : -1 AGAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CYP71B28 |LOCUS: AT1G13090 |PROD: cytochrome P450 71B28, putative (CYP71B28) |4461804..4463541 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.27 C - 0.18 1 tgctacgtag agaaccattg ggcccataaa cttattttat tcccgcaaag 51 cctgagtgga ttcgaaccac taccacaaaa agtaagagtt tgggttattt 101 gattttaatc attcactttg aattattata gacaccggac agtgacttat 151 gataaagaga tttttaacct ttaaaactaa aacactaaaa tacataatcc 201 AAAGAAGACG GAACAAAAAA CAAAAACAGA GCCAGGAATA ATGTCAGTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.001 -strand -190 : -199 TCtACGTAGC AC RSP00488 Mean Expected Number 0.002 -strand -191 : -200 CTACGTAGCa AC RSP00550 Mean Expected Number 0.006 -strand +1 : -10 TGGATTATGTa AC RSP00629 Mean Expected Number 0.008 -strand -36 : -43 AAAAATCT AC RSP00741 Mean Expected Number 0.001 -strand -28 : -39 tAAAGGTTAAAA Totally 5 motifs of 5 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G13195 |PROD: the same as GENE |complement(4501081..4503588) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +244 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.48 G - 0.13 T - 0.25 C - 0.14 1 gcgactatta aacctatatt cattcacttt gaaataatta aaaagttcat 51 attcattcac atacaaaaag ccatctcaac tcaaagttta taattaatta 101 gcttattaaa caaggaaaaa aacatattaa ttttgtcatt aagaagaaga 151 cgaatttttc ttcaaacatg attaatatat aaataaaaag ctagcaaccg 201 GAAACAAAGA ATCAAAAAGG CAAAAAGCAA AGAGAGAGAG AGAGAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.003 +strand -71 : -60 ATTTTGTcATTA AC RSP00857 Mean Expected Number 0.003 +strand -130 : -121 CCATCTcAAC AC RSP00864 Mean Expected Number 0.002 +strand +31 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +33 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +35 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +37 : +45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +39 : +47 AGAGAGAGA AC RSP01236 Mean Expected Number 0.010 +strand -154 : -145 TCATAtTCAT AC RSP01283 Mean Expected Number 0.000 +strand +32 : +48 GAGAGAGAGAGAGAGAA AC RSP01600 Mean Expected Number 0.008 -strand -167 : -174 TTTCAAAG Totally 10 motifs of 6 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl transferase family 8 protein |LOCUS: AT1G13250 |PROD: the same as GENE |complement(4528620..4530060) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.07 T - 0.27 C - 0.28 1 caaaatcacc gaaagacttc ataattattg ttaaaattat cccaaaacat 51 acttattcac taactttcat gacttaactt tttattacaa gtaacgacaa 101 tcaTCAATta acgcttaagc ataaaccaca aaaagtctaa aatgtcgaaa 151 ctacccctaa tctgccatta acaccgacac aaaaaacctc catctctttc 201 ACAGTTCACT CTCTCTTGCC TCTCCACTCA CTCACAGACT ACACAACACA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G13460 |PROD: the same as GENE |4615810..4618326 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +691 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.19 T - 0.24 C - 0.12 1 caaaactatg tcgtataata gtgttacggt cggcaattaa aatctggaat 51 tttaaaacat tttgaagtgt tgtcagcttg aaaattctgt aaaaattact 101 aattcaagtg agggaggagt ggacctggca ggccagaccg aacacacaca 151 caaaaaaaaa caatattaaa ataaagggga ataaaaaaac aattaaaatt 201 AAATTAAAAT AGAATTGAGA AAAAAAAGTT TGATCAGCCA TCGGAGGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.006 -strand -167 : -172 GCCGAC Totally 1 motifs of 1 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G13990 |PROD: the same as GENE |4794761..4796594 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.23 T - 0.31 C - 0.14 1 ttaatcacgg acctttggaa cgaggtagaa ggtcttgaac atgtgtggaa 51 cccaccaaag gaaaaatatc agtagattca ggagagttgt taaattttgc 101 ctccacgagt ttttttcttt tcttcttgtt gagtcgttta cgtcacgtcg 151 agaattttct cttttcccga gaaaattaag aaaggatcgt ttgattttct 201 AAGAAGGGAA AGATAAACAG TGAATTAGAA AGAGAAGGAA GTTTCAATGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.003 -strand -56 : -63 TGACGTAA AC RSP00233 Mean Expected Number 0.003 +strand -64 : -55 TtTACGTCAC AC RSP00861 Mean Expected Number 0.003 +strand +27 : +35 AGAAAGAGA AC RSP01134 Mean Expected Number 0.005 -strand -161 : -170 GTTCaAGACC AC RSP01202 Mean Expected Number 0.002 -strand -183 : -190 CCAAAGGT AC RSP01336 Mean Expected Number 0.000 +strand -58 : -45 TCAcGTCGAGAATT Totally 6 motifs of 6 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1221. Group TF: BGTF /AC: RSP01336//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Site1, mut) /TF: BGTF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G14060 |PROD: the same as GENE |complement(4817141..4818017) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.21 T - 0.37 C - 0.16 1 atcttaacaa tacattattc ttgaatcgtc ttgtggacag atcattcttt 51 tgttgttgtt ttatcatatt cactttggtt aaattcttac ggtttaacaa 101 aggtttaagt tcggtttggt ccggtttaga atatccggtT CAATagaaag 151 gtttttgagg ggttttaaca taaagacgtt tcgattgatc atttctctct 201 GGCTTGTAAA GAGAATCGGC GGCGGCACCG AGAGAGAACC TTAAAACCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.002 +strand -138 : -127 ATCATaTTCACT AC RSP00421 Mean Expected Number 0.005 +strand +27 : +33 ACCGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 2-oxoglutarate-dependent dioxygenase, putative |LOCUS: AT1G14120 |PROD: the same as GENE |complement(4833516..4835083) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +253 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.35 C - 0.19 1 ttgcatccct atgcaaattc gtatttgcat gtatgatgta tctatatgat 51 gttaacacaa aggaaccaca ttatgcccgt agtgtcacat tcacgtggaa 101 agcgtggaga gtattttatt aattactacg gcagacttct gtgcatggtc 151 gaaaatactt cgacttcttt atataataat ctcgccttcg ataagtcatc 201 TTACAATACA TTTACTCCTT CGTTTTTCTC GAGAAATCTA GAGATAATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.007 -strand -54 : -60 CATGCAC AC RSP00640 Mean Expected Number 0.001 +strand -110 : -103 TCACGTGG AC RSP01734 Mean Expected Number 0.006 -strand -102 : -108 TCCACGT Totally 3 motifs of 3 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: mitochondrial substrate carrier family protein |LOCUS: AT1G14140 |PROD: the same as GENE |complement(4837924..4839630) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.23 T - 0.31 C - 0.18 1 actataatgt ctactcggtc tttcatgttt tgccacgtcg gctgttatct 51 ctaaagtttt gtattttaga atttgtgaac atgggcccat aagactttaa 101 agcCCAATat tatggaaacg acgtcgtcaa atacactctg atgaccgaaa 151 cgatgtcgtt gactacgaaa tagaatcaag ttgtgttctc tgtgatggac 201 ATTGTGTTAG TGGTAATCAA ATCCGGTGAA AATGGAGCGG AGCCGAGTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00208 Mean Expected Number 0.000 +strand -169 : -158 GCCACGTCgGCT AC RSP00248 Mean Expected Number 0.003 +strand -169 : -160 GCCACGTCgG AC RSP00459 Mean Expected Number 0.006 +strand -42 : -33 TTGACTAcGA AC RSP00949 Mean Expected Number 0.005 -strand -36 : -43 TAGTCAAC AC RSP00986 Mean Expected Number 0.001 +strand -168 : -161 CCACGTCG AC RSP01034 Mean Expected Number 0.006 -strand -163 : -169 ACGTGGC AC RSP01091 Mean Expected Number 0.004 +strand -31 : -21 ATAGAATCAAg AC RSP01476 Mean Expected Number 0.008 -strand -100 : -107 TTTAAAGT Totally 8 motifs of 8 different REs have been found Description of REs found 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: oxygen evolving enhancer 3 (PsbQ) family protein |LOCUS: AT1G14150 |PROD: the same as GENE |4839850..4840748 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.28 C - 0.22 1 acttgattct atttcgtagt caacgacatc gtttcggtca tcagagtgta 51 tttgacgacg tcgtttccat aatattgggc tttaaagtct tatgggccca 101 tgttcacaaa ttctaaaata caaaacttta gagataacag ccgacgtggc 151 aaaacatgaa agaccgagta gacattatag ttttgagctc ctcccatttc 201 ATATCCTTAA GAAAAACAAA AACAAAAATC AAATGAGCTC CTTCACCACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00208 Mean Expected Number 0.000 -strand -51 : -62 GCCACGTCgGCT AC RSP00248 Mean Expected Number 0.002 -strand -51 : -60 GCCACGTCgG AC RSP00459 Mean Expected Number 0.006 -strand -178 : -187 TTGACTAcGA AC RSP00949 Mean Expected Number 0.006 +strand -184 : -177 TAGTCAAC AC RSP00986 Mean Expected Number 0.001 -strand -52 : -59 CCACGTCG AC RSP01034 Mean Expected Number 0.004 +strand -57 : -51 ACGTGGC AC RSP01091 Mean Expected Number 0.004 -strand -189 : -199 ATAGAATCAAg Totally 7 motifs of 7 different REs have been found Description of REs found 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G14260 |PROD: the same as GENE |4872900..4874902 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +295 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.31 C - 0.24 1 caacaaaaaa gagagactac tttagattac cactaggagc cgttatactt 51 aagttctggt caacggctat ataactaacg gagccgttag tcttttcaga 101 cgtcgttatc tttcccgcta taaaaagcca ttttccatta gcttgatttc 151 cgggccaaac aaaatctttt gtgaagaaac tttctctcat cttcccaagg 201 GAGAGAGCAA ATACCAAAAA CTTCTTTTTG CGTCTCTCTT CTAACATTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.003 +strand -90 : -83 TTTCCCGC AC RSP00445 Mean Expected Number 0.007 +strand -196 : -187 AAAAAAGAGA AC RSP01030 Mean Expected Number 0.007 +strand -26 : -19 AGAAACTT Totally 3 motifs of 3 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CAAX amino terminal protease family protein |LOCUS: AT1G14270 |PROD: the same as GENE |complement(4874870..4877229) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.34 C - 0.17 1 gtggacatga ttctcccaag gaacaaaatt acaaattaga agacacgagg 51 gatgtacgta ttttgtgata tactgacaaa gacttgtcgt cgagttagtt 101 ggtcgttaat gggctttggg cctatactga cataaatggg ccttaaacaa 151 cgttatttta agtaagtaac ggtttttttc tacccgctcg ttttagtcgg 201 ATCTTATCCT CTTCCTCAAT CTGATAATCG TGTTGGTTCA TGTGTGGAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.007 +strand -118 : -109 CTTGTCGTCg AC RSP00428 Mean Expected Number 0.002 -strand -23 : -34 AAAAAACcGTTA AC RSP00792 Mean Expected Number 0.002 +strand -185 : -176 CCAAGgAACA AC RSP00960 Mean Expected Number 0.010 -strand -100 : -107 CAACTAAC AC RSP01185 Mean Expected Number 0.003 -strand -99 : -110 CCAACTAACTCg Totally 5 motifs of 5 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT1G14340 |PROD: the same as GENE |4897341..4898956 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +363 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.36 C - 0.20 1 aatatttgtg attatgggtt gtttgagact ggaaaataat caaacaacat 51 tgggcctttc atgtagaatt ttttattaca tttagaaccg ttaacgatat 101 gggctaactc aagacattaa aggcccaacA TTGAgttact aaacggcgca 151 gtttttagct ttttaaaatt gcgtcttttt cgttcactga aaaggtagtc 201 CTTCTCTTTC CCACTCACAT CATCAACTTC ATCAATTCAT CACCTTTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.007 -strand -6 : -12 CCTTTTC AC RSP00915 Mean Expected Number 0.003 -strand +24 : +15 GATGATGTGA AC RSP00916 Mean Expected Number 0.004 -strand +24 : +15 GATGATGTGA Totally 3 motifs of 3 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G14345 |PROD: the same as GENE |4899141..4899974 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.37 C - 0.21 1 ttggttacat tacctacatc ttaactcttc attagtagca taatcttttt 51 tcttatataa tttctgattt atatcattct atggttgata ttgattcaat 101 atttggatag atgttgtatc catagagctt aggccacgtg gcACAATttg 151 cgccaaaaaa tcaaatccaa aaaacagaga agtcatcatc ttttcactcc 201 AAATCTTCCA GTCACTCAAA TCATTCTCTC ATGGCAGCTT CTTCCTCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.000 +strand -68 : -59 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.000 -strand -59 : -68 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -68 : -59 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -59 : -68 GCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -67 : -58 CCACGTGGCa AC RSP00153 Mean Expected Number 0.000 -strand -60 : -69 CCACGTGGCC AC RSP00175 Mean Expected Number 0.000 +strand -66 : -59 CACGTGGC AC RSP00175 Mean Expected Number 0.000 -strand -61 : -68 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -68 : -59 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -59 : -68 GcCACGTGGC AC RSP00405 Mean Expected Number 0.007 -strand +3 : -5 TTTGGAGT AC RSP00682 Mean Expected Number 0.001 +strand -68 : -59 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -59 : -68 GCCACGTGGc AC RSP00718 Mean Expected Number 0.000 +strand -67 : -60 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -60 : -67 CCACGTGG AC RSP01034 Mean Expected Number 0.002 +strand -65 : -59 ACGTGGC AC RSP01034 Mean Expected Number 0.004 -strand -62 : -68 ACGTGGC Totally 17 motifs of 9 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calmodulin-binding family protein |LOCUS: AT1G14380 |PROD: the same as GENE |complement(4917583..4921591) |SUPPORT | 8 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +835 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.17 T - 0.37 C - 0.21 1 ccaagaaaaa ggagggtatt tctgtaaata actccctttg actcctttaa 51 ttgggcccag aaaggcctag ttttagactt tgcctacaca tcattccaaa 101 cgacgtcgct ttgaaccgaa atttcttttg tttttgtcta ttccttaatt 151 aattttttct ttctaattaa aagtggtaat atctgtcatc ttcttctttc 201 GCTATCAGTG GAACCGTTGG GGAAGACTAT TTGTTCACAG TGAGCTACCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.009 -strand -37 : -45 AGAAAGAAA AC RSP01214 Mean Expected Number 0.001 -strand -136 : -145 CCTTTCTGGG AC RSP01711 Mean Expected Number 0.005 +strand -134 : -125 CTAGTTTTAG Totally 3 motifs of 3 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G14450 |PROD: the same as GENE |complement(4946213..4947571) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.25 C - 0.16 1 gatattaaag agaaccataa gaaaactagt ttacgacatt attattttcc 51 gatttttttt caaaagaagc ccaaatgata acctaaagtt aaagcccata 101 tgacgacaaa aaataaattt aaagcccata tacatcaaag aagcccatga 151 tttgtcattt gagaagaaag ttaagaggaa tagtacggtc gcaggagatt 201 AATCGAATAC CTGAGAAAAT GGCGAAGCCT TTGGGAACAA CCGGCGAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.009 -strand -91 : -100 tTTGTCGTCA AC RSP00969 Mean Expected Number 0.002 +strand -101 : -92 ATGACGACAA AC RSP01598 Mean Expected Number 0.003 +strand -48 : -41 TGTCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G14687 |PROD: the same as GENE |5047798..5048607 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +243 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.32 C - 0.14 1 atatattagt actagtttac tagtactaat tagccgctat agttttacaa 51 aaagtggttt agttttctta ttcctcatta ttgctactac acttaaccca 101 atggATTGAa agagttaact atgggtagag atgacaactt tatgagctga 151 gaggatacga aattatggat gtgtagaaaa gcaaagccag tgaaacagtt 201 CAAAAAGTGG GTTTTTCACA TTTATTATGA CAACTAATAA ACACGTAAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00235 Mean Expected Number 0.001 +strand -108 : -97 TTAAcCCAATGG AC RSP00447 Mean Expected Number 0.007 +strand -26 : -17 AGaAAAGCAA AC RSP00447 Mean Expected Number 0.007 +strand -21 : -12 AGCAAAGCcA AC RSP01261 Mean Expected Number 0.004 -strand +48 : +41 TTACGTGT Totally 4 motifs of 3 different REs have been found Description of REs found 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: semialdehyde dehydrogenase family protein |LOCUS: AT1G14810 |PROD: the same as GENE |complement(5102419..5104684) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.34 C - 0.22 1 acaacttaat atttccaaaa gaagaaatga tgaaacacat gagaaagttg 51 tgtgaatata ctcaatctgg tgaatgagca gtttcaaaca tcatgctgtt 101 tctgtatctt aaattaaACA ATcttgctgt tttgaatttt gaagatgttg 151 gtcaattcac taacacactt taaagtccca agcttttttc tatcagccgc 201 CTCCAAAATC TCTCTATCTC TCTGTCTCTC ACTTCTTCTT CCTCACGGCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 +strand -6 : +1 AGCCGCC AC RSP00467 Mean Expected Number 0.003 +strand -52 : -43 TGGTCAATTC AC RSP00468 Mean Expected Number 0.001 +strand -53 : -43 TTGGTCAATTC AC RSP01032 Mean Expected Number 0.007 +strand -186 : -177 CCAAAAGAAG AC RSP01209 Mean Expected Number 0.005 -strand -177 : -186 CTTCTTTTGG AC RSP01469 Mean Expected Number 0.007 -strand -157 : -166 TCtCATGTGT AC RSP01482 Mean Expected Number 0.001 -strand -43 : -53 GAATTGACCAA AC RSP01640 Mean Expected Number 0.008 +strand +20 : +29 CTcTGTCTCT Totally 8 motifs of 8 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ADL1C |LOCUS: AT1G14830 |PROD: dynamin-like protein C (DL1C) |complement(5107416..5111665) |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.37 C - 0.18 1 taatcaggtc ttaatgataa ttagtagttt tgacttttga gtaaaaaaga 51 aagaaaaaaa gaacataacc acatgaattg aaccggttcc gtatcattga 101 ccggtacgcg tttagcgacg tgggatttga tatattttca ctttcggtcc 151 aaaagtatta tatatttgag caagtagtcc tacttttttg gtttgaaatt 201 GTTTTTCCCA TTACCGTTCT CTGCTCCATT GGGTTCTTTC CTCTTTTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand -158 : -145 AAaAAAGAAAGAAA AC RSP00445 Mean Expected Number 0.005 +strand -158 : -149 AAAAAAGAaA AC RSP00860 Mean Expected Number 0.001 +strand -153 : -145 AGAAAGAAA AC RSP00986 Mean Expected Number 0.001 -strand -78 : -85 CCACGTCG AC RSP01745 Mean Expected Number 0.000 +strand -174 : -162 GTTTTGACTtTTG Totally 5 motifs of 5 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 1552. Group TF: WRKY11 /AC: RSP01745//OS: Arabidopsis thaliana /GENE: At4CL4 (At3g21230)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G14890 |PROD: the same as GENE |5137048..5137926 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.25 C - 0.20 1 ataaagaatg cagttccttt taaggtacgg ctaagatagt gaatctacca 51 agccttcctt ttcacaccaa ctatggataa aatacacccg acaaaatgat 101 tagtggccat aatgtgatta taatgagcat gaatgggcaa acatgtcaca 151 tttctccatt actcaatgtc tacataaacc ctccaatctc acatgttaac 201 TCGAAACAAA GAAGAAATAA ACAGAGTAAA AAACTTAAAG CTTAAAATGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.008 +strand -144 : -138 CCTTTTC AC RSP00521 Mean Expected Number 0.009 +strand -117 : -111 ACACCCG AC RSP00711 Mean Expected Number 0.001 +strand -139 : -128 TCaCACCAACTA AC RSP00999 Mean Expected Number 0.003 -strand -159 : -169 TCACTATCTtA AC RSP01150 Mean Expected Number 0.007 -strand -76 : -86 cATTATAATCA AC RSP01205 Mean Expected Number 0.008 -strand +50 : +41 CCATTTTAAG Totally 6 motifs of 6 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 677. Group RE: Box 1 homolog /AC: RSP00711//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: high-mobility-group protein / HMG-I/Y protein |LOCUS: AT1G14900 |PROD: the same as GENE |complement(5138329..5139419) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.25 C - 0.24 1 aaaaaggaag attggaggag aattaggtaa tttaagggta atagtcagca 51 gaagtcattc ccatatgtcc acgtcagtaa tcctgctcga gaaagctgct 101 ataaactcag agccgttgga tcaacccgta agtttgaaaa ccccaaccgt 151 cagatcaaca ctacaagtta atatgagaat aatgagaaaa ccactttccc 201 AAATTGCTTT TTAAAATCCC TCCTCACACA GATTCCTTCC TTCATCACCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.004 -strand -125 : -132 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -132 : -125 CCACGTCA AC RSP00248 Mean Expected Number 0.004 +strand -133 : -124 tCCACGTCAG AC RSP00501 Mean Expected Number 0.006 -strand -112 : -118 CGAGCAG AC RSP00996 Mean Expected Number 0.008 -strand -42 : -51 GTTGATCTGA AC RSP01275 Mean Expected Number 0.004 +strand -133 : -124 TCCACGTCAg AC RSP01497 Mean Expected Number 0.002 +strand -89 : -80 GCCGTtGGAT Totally 7 motifs of 7 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: major latex protein-related / MLP-related |LOCUS: AT1G14960 |PROD: the same as GENE |complement(5159194..5160076) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.30 C - 0.15 1 attaactgat taatttagct aactgaacac atgatcatat agcatatata 51 tatatatcaa tacgtgacta taattgttta taatatatga accgtcaaca 101 atttaaaagc cgtataaaaa ttttggtaat agtttccttg ttaacgtagc 151 ttggtgttga gcttgtctat ataaaggaag ggagagatca tagtatttgc 201 ATCAGAAAAC AGGAATAAAA GCACTCAAAA GTCAAAGCGC GCGCGCGCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.007 +strand -131 : -121 aTAATTGTTTA AC RSP00354 Mean Expected Number 0.005 +strand -59 : -52 TAACGTAG AC RSP01687 Mean Expected Number 0.009 -strand -89 : -95 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CPN10 |LOCUS: AT1G14980 |PROD: 10 kDa chaperonin (CPN10) |complement(5165623..5166740) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.26 C - 0.23 1 caaagagaat catggaagga actaaccatt tgagctgcaa ggtcatacaa 51 cacttccaag aatttattta gacaaacaca aatgcgactg gtttttttta 101 atgagtgagg cccattaaag aaatagtatg atattatagg cccaaACAAT 151 cccaaaaccc ttggcctttt tctgtcgcgc taaaccctac gatctagaac 201 CTTCCGTCTT ATGTGTCTCT GCCCCAAATT AAAAACTCAG AAACCCTAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00868 Mean Expected Number 0.003 +strand -74 : -63 TATgATATTATA Totally 1 motifs of 1 different REs have been found Description of REs found 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPAP2 |LOCUS: AT1G15080 |PROD: |5187623..5189668 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +452 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.40 C - 0.12 1 gaaaccaaaa ataaaaactt tcaattaaat ataatatttt ttgtggttag 51 ttttgatgtt ttcttttaca attttatata gttgatttct ttcctgatat 101 ttttgaacaa ctgattttta acagattaaa atattaaaca gagtagtctc 151 tgttatttct gacagacaaa aacataaagc taaagagaga ggaggttgct 201 TTTTCTTTAT TGGACGAACA AAAAACTTTA TCTTTCCTTC CTTTGAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.007 -strand -46 : -55 TAACAGAGaC AC RSP01195 Mean Expected Number 0.003 +strand -168 : -156 AATATTTTTTgTG Totally 2 motifs of 2 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G15120 |PROD: the same as GENE |5202849..5204188 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +237 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.29 C - 0.18 1 tcagaagtta aggaatattc tgacaaggat aggatgccct taagggaatc 51 tagagtcttg aatgggcttt tagaattcca agaagctagg gaatctcgag 101 tctttaatgg gcttttaaag tttcaagaat caaaggccca aATTGCatat 151 ttgtagcccg tcggaaacgc aatgaaaatg atgaatctga agactgactc 201 AAACAACATC TCTGTAGGGT TCTTCTTCCT TGCTTCTTCG AGTCTCGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.002 -strand -19 : -30 ATCATTTTCAtT AC RSP00234 Mean Expected Number 0.003 +strand -90 : -81 GCTTTTAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cytochrome c biogenesis protein family |LOCUS: AT1G15220 |PROD: the same as GENE |complement(5240024..5241533) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +404 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.38 C - 0.20 1 ctatgtttca ttgttttggt tcatctcata tttctcttct caatttgttt 51 tggtcatttg gactccaaag agtgttggtc ttctcttagt gagttttatg 101 cagttactga tagaatatag ttctatcagt tacaaggccc atgtttatta 151 caatttcaaa caaattatat atttgaaggg cccatgttta ttatgcccac 201 GAGCACTGTA TACGCGCGAA ACGTCTTCGG ACACACTCTC AGTCGCACGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 -strand -43 : -53 TGAAATTGTaA AC RSP00385 Mean Expected Number 0.009 +strand -48 : -41 ATTTCAAA AC RSP00405 Mean Expected Number 0.003 -strand -132 : -139 TTTGGAGT Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L37 (RPL37A) |LOCUS: AT1G15250 |PROD: the same as GENE |complement(5248660..5249457) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.26 C - 0.25 1 agcaatcgtc atcacattga taagcagtgt tcaaaattgg tcccctactt 51 atcattgcca ccaccactca ctactcatat tatatatact gtatgccagt 101 tgactcgagg taatatcaga accaggccca tgaagcccat taagaagccc 151 atatttttgg cggtaaccaa tgaagatcca ttttgggtag gaaaaaccct 201 AAAGGACGCT ACACAGTCGT CTTCTCGGAG CCGCAAAGAT TTCTGTAGAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +2 : -7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -7 : +2 AAACCCTAA AC RSP01014 Mean Expected Number 0.008 +strand -34 : -25 CcAATGAAGA AC RSP01214 Mean Expected Number 0.002 +strand -23 : -14 CCATTTTGGG AC RSP01303 Mean Expected Number 0.006 +strand -8 : +2 aAAACCCTAA AC RSP01604 Mean Expected Number 0.005 -strand +17 : +10 ACTGTGTA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G15260 |PROD: the same as GENE |5249755..5250568 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.31 C - 0.19 1 tcaactggca tacagtatat ataatatgag tagtgagtgg tggtggcaat 51 gataagtagg ggaccaattt tgaacactgc ttatcaatgt gatgacgatt 101 gcttacctat aaaagtggac aacACAATca acaagatgac accttcttaa 151 agtctgacac tatcagcttg cttcttcaac tactacatgc cactaaatca 201 ATGTTAGGTT TCCTTTTGAG ATCCCTAGTG ACATAAATAT GGTTATCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.008 -strand +10 : +1 AACCTAACaT Totally 1 motifs of 1 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G15470 |PROD: the same as GENE |5315502..5317858 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +331 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.33 C - 0.18 1 ctattcaatc ctcacgcgat tgaggagtga ctgaccaaag tttatttcta 51 taggggcaat ttaataacta ttgtaaactt tcaacgtaaa aattaattac 101 tttgaagtta tggggcaata tcaTCAATag taataaatat aagcccttac 151 tcgtaaaata caaaaggttt atttgttttc tgaattgaga gcgtgtaact 201 ACTACCATCG TCGTCTCCGC GAGTTCTTCT CTGCGTTTAA GCCATAGATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.010 -strand -150 : -160 ATAGAAATaAA Totally 1 motifs of 1 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: chloroplast ADP, ATP carrier protein |LOCUS: AT1G15500 |PROD: the same as GENE |5326285..5328869 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.33 C - 0.23 1 atcttttttt aatactaatc attaagtcca ttttgacgaa atatgtgaac 51 gtcattacaa aaatcttcag aatattcaga ccaattcaat tttattaatt 101 acaaggatta tcagcttcga acataattag acggtaagag ccgccctgtt 151 agggtttttt gtcctcaatg ccaaaatcct cccattgcag atattatatc 201 ACTCCCACTG TCTAATAAAC AACTCTCTTC TCCTCTCTAC CCAGAGCGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 +strand -62 : -56 AGCCGCC AC RSP00176 Mean Expected Number 0.001 +strand -66 : -56 TAAGAGCCGCC AC RSP00279 Mean Expected Number 0.001 +strand -52 : -44 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -44 : -52 AAACCCTAA AC RSP00438 Mean Expected Number 0.010 -strand -56 : -61 GGCGGC AC RSP00807 Mean Expected Number 0.010 +strand -61 : -56 GCCGCC AC RSP01303 Mean Expected Number 0.001 -strand -43 : -52 aAAACCCTAA AC RSP01322 Mean Expected Number 0.000 +strand -66 : -56 TAAGAGCCGCC AC RSP01323 Mean Expected Number 0.000 +strand -66 : -56 TAAGAGCCGCC AC RSP01654 Mean Expected Number 0.008 -strand -145 : -154 AATGACGTTC Totally 10 motifs of 10 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1212. Group RE: GCCGCC-ERE /AC: RSP01322//OS: Nicotiana tabacum /GENE: CHN50/RE: GCCGCC-ERE /TF: unknown 1213. Group RE: GCCGCC-ERE /AC: RSP01323//OS: Nicotiana tabacum /GENE: GLN2/RE: GCCGCC-ERE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G15980 |PROD: the same as GENE |5489292..5491303 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.31 C - 0.22 1 accaatgtaa agacaaaagt tttaattaat cgaacagaga ataatttctg 51 gaattgccat aaccaaaata aataaattaa atgctaagtt ttcttctatg 101 gtcggaaaAT TGCcacaaaa gggacccact tatcctaagt tcctacagag 151 atctgttttc tttcacaaca tttaaaaatc caaacttttc tttctttggc 201 TCAAAAAAAC CTTCCAATGG CTTCTTCACT TCCTCTGTTA CCCAAACCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.008 +strand -178 : -170 TAATTAATC AC RSP00698 Mean Expected Number 0.004 +strand -179 : -169 TtAATTAATCG AC RSP00860 Mean Expected Number 0.004 -strand -6 : -14 AGAAAGAAA AC RSP01033 Mean Expected Number 0.004 -strand -79 : -88 CCTTTTGTGG AC RSP01209 Mean Expected Number 0.003 +strand -11 : -2 CTTTCTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G16000 |PROD: the same as GENE |5494530..5495317 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.29 C - 0.13 1 ctttcgatga gtagcgaatt taccgcgtat tttttggtga aactgtaatg 51 tcagaaagtt atcacgcttc tacactaata tgtaacaaaa tatggggttt 101 aaaatgttat TCAATaaaaa ggaaatctta tgttgatggg ccataataag 151 gcccacttat acatggtact aaaacctctg atggataaac cttgtgtgct 201 GTTGATCGGA AAGGAAAAGT AAAAAAGAGA GATCTGAGAA ATGGGAAATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00366 Mean Expected Number 0.001 -strand -140 : -151 TaACTTTCTGAC AC RSP00445 Mean Expected Number 0.003 +strand +21 : +30 AAAAAAGAGA AC RSP00559 Mean Expected Number 0.005 +strand -157 : -147 TGTAATgTCAG AC RSP00746 Mean Expected Number 0.002 +strand -109 : -98 ATGGGGTTtAAA AC RSP00870 Mean Expected Number 0.007 -strand -38 : -47 TGTAtAAGTG AC RSP01032 Mean Expected Number 0.008 +strand -60 : -51 CCATAATAAG AC RSP01733 Mean Expected Number 0.008 +strand -178 : -173 CCGCGT Totally 7 motifs of 7 different REs have been found Description of REs found 351. Group RE: ERE /Group TF: TDBA12 /AC: RSP00366//OS: Nicotiana tabacum /GENE: CHN50/RE: ERE /TF: TDBA12 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G16020 |PROD: the same as GENE |5498159..5501352 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +468 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.33 C - 0.23 1 agatactaac tgaatgattg aacaaattat ttgagattcg cattcacaca 51 acgtataatt cagacggata tgtctgactt aaccggtgga gcatctagaa 101 atattcggtt tacccgtttc agatATTGAc ccgattattt gataacccga 151 cccggtttat ttcgtggcgg ttagcagctg tccacctgct cctcttcctt 201 GATCCTTGTC ACAAAATGTC GCGTAATTCT TCTACTGATT TCAGCTCAAT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G16210 |PROD: the same as GENE |complement(5546127..5547546) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.28 C - 0.21 1 tcggattaag ttggttgaac cgttaagcgg ccctctaaac tttggacaag 51 ggattgtagt ggatttttga aaaaaagaat cccggttaac gaccttaaca 101 aatgaaatga tcgatcggtt gttgacccag cttttgagcc accgccttaa 151 ccaaacaaag ctgttaagat cgaaccagtc aattctcagc tctgagcggt 201 ACGGTTAATT CATTTCTTAT CTATCACACA AAGTTGAATC GTAACCCTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00698 Mean Expected Number 0.004 -strand +12 : +2 TGAATTAAcCG AC RSP00881 Mean Expected Number 0.007 -strand -75 : -84 gTCAACAACC AC RSP01015 Mean Expected Number 0.009 +strand -102 : -93 CAAATGAAAt AC RSP01058 Mean Expected Number 0.004 +strand -144 : -137 TAGTGGAT AC RSP01209 Mean Expected Number 0.008 -strand -41 : -50 CTTTgTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SYP51 |LOCUS: AT1G16240 |PROD: |complement(5555001..5556835) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +463 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.33 C - 0.18 1 aagcacagtc agagagaaac tcaggattct ggcaaggaag agaggagacg 51 gaagaaacag gcatgagatg gatagatcca ttataatggg tcgaaaattt 101 aaatattctt tATTGAtccc ttcatttata tgttctttct gcttcttaac 151 gcatactttc ttaaataact aatttaaccc ataacttttc caagataaca 201 AGTTAAAACC GCGTCGTTTT ATTTCAGCTT CGTCTTTATC TCATCTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01470 Mean Expected Number 0.008 -strand -135 : -144 TCATGCcTGT Totally 1 motifs of 1 different REs have been found Description of REs found 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G16500 |PROD: the same as GENE |5639025..5640166 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.32 C - 0.24 1 ggtagacaaa agatggtaca acaataaaga atttccatgc aaacaaaagt 51 atcctagtat attcacaata aatgaaagaa attaattggc tataaattta 101 ctacttataa ccgtcctcgt aattaacttt gagagtagaa ggctctgttt 151 ttcttacaat ggccccatct atataactct ctctctgcct aacagacccc 201 ATAACTGACC TCCCCTCTCT CTCTCTCTTT CTCTCTGCTT TCTTGGTATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.006 +strand +29 : +39 TTCTCTCTgCT AC RSP00861 Mean Expected Number 0.004 -strand +32 : +24 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +28 : +20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +26 : +18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -15 : -23 AGAGAGAGA AC RSP01015 Mean Expected Number 0.006 +strand -132 : -123 tAAATGAAAG AC RSP01162 Mean Expected Number 0.001 +strand -178 : -166 aATAAAGAATTTC Totally 8 motifs of 5 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NADH-ubiquinone oxidoreductase 23 kDa subunit |LOCUS: AT1G16700 |PROD: the same as GENE |5709718..5711889 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +287 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.31 C - 0.17 1 tttgtgaact ttaggtccgg ttagtgacca ttgatcaggt attaactttt 51 ttcagcaatg gtctagtttg gtccacgtct tgagaacctg gatcctgaaa 101 tgtgtgaaac ttggaaggaA TTGActgtca taccaaatat aaccggtttg 151 attgcccggt tatgagctga gtaagtagtt aaccagaagg gtcaatttgt 201 AAATTAAGAG ACATCTGATC GAATTTTGTT CCGACGACCG TGAATCACCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 +strand -129 : -120 TCCACGTCTt AC RSP00819 Mean Expected Number 0.002 +strand -129 : -120 tCCACGTCTT AC RSP01275 Mean Expected Number 0.003 +strand -129 : -120 TCCACGTCtT AC RSP01692 Mean Expected Number 0.005 -strand +23 : +16 TTCGATCA AC RSP01723 Mean Expected Number 0.000 +strand -130 : -119 GTCCACGTCTTg AC RSP01734 Mean Expected Number 0.008 +strand -129 : -123 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown 1531. Group TF: STF1/HY5 /AC: RSP01723//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: C/G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G16705 |PROD: the same as GENE |5712081..5713745 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +381 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.33 C - 0.17 1 ttcaatggtg ttgttactct cagtgtcggt cggtcaagtg tctaacaaaa 51 aattgctaat atctgaagag aacattaatg atgtaaaata cagagaaata 101 caagggtaaa atggtagttt aatagactgg catgaacatg cataATTGCa 151 tatctagtaa aaacctctga ttggcagaaa ctccagctca ggaacttact 201 CTATTTGGAA TTTCGTCTTA AATTCGCTTT CTCATCTTCT TTTACTTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01085 Mean Expected Number 0.000 -strand -171 : -179 ACCGACACT AC RSP01470 Mean Expected Number 0.009 -strand -56 : -65 TtATGCATGT Totally 2 motifs of 2 different REs have been found Description of REs found 1003. Group RE: DRE2 /Group TF: HaDREB2 /AC: RSP01085//OS: Helianthus annuus /GENE: sHSP/RE: DRE2 /TF: HaDREB2 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ribosomal protein L20 family protein |LOCUS: AT1G16740 |PROD: the same as GENE |5727683..5729072 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.31 T - 0.25 C - 0.14 1 acacgtggta atgacatggc aacacgtgtc ctctgtcggg agttactgga 51 tgggatagtg ggctttgttt agtttgtgat gttatataat aaaggcccag 101 tagatggaga ATTGGtttta ataattgtgt gaccggattt gtctacgacc 151 cgacccgatc gacccggaat tgaaacagaa gggggataca cagaggcggc 201 GTTAGAAGAA GGAAATGGAG TTACAGTATT AGTGAGAGAA GGACGAAGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00050 Mean Expected Number 0.000 +strand -179 : -168 ACaCGTGTCCTC AC RSP00055 Mean Expected Number 0.001 -strand -73 : -84 AcAATTATTAAA AC RSP00460 Mean Expected Number 0.004 -strand -181 : -190 GcCATGTCAT AC RSP00479 Mean Expected Number 0.000 -strand -169 : -182 AGGACACGTGTtGC AC RSP00524 Mean Expected Number 0.009 -strand -172 : -178 ACACGTG AC RSP00953 Mean Expected Number 0.002 -strand -74 : -82 CAATTATTA AC RSP01035 Mean Expected Number 0.009 +strand -177 : -171 ACGTGTC AC RSP01255 Mean Expected Number 0.003 +strand -200 : -193 ACACGTGG AC RSP01256 Mean Expected Number 0.003 +strand -179 : -172 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -172 : -179 ACACGTGT Totally 10 motifs of 9 different REs have been found Description of REs found 49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 457. Group RE: G-box /AC: RSP00479//OS: Nicotiana tabacum /GENE: ZGT/RE: G-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G16750 |PROD: the same as GENE |complement(5729090..5731863) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.37 C - 0.19 1 ctaacaataa taatcaaaaa cttttgaatt tactcgagta gttttaaagt 51 tttgtgggaa gataaaggtt gaagctttaa tatttactct gtttttttgg 101 gtagaacaac tcgtGCAATg ggggtctgtg atgaaagtga caaatagcta 151 aatattttct catgcattta ttgagtctct ctttggaccc gatcccattc 201 AACTCATCTT CACAGATGTC TCAAGCAGCT CTCTCTCTTT CTCTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 -strand +42 : +34 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +50 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +48 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +38 : +30 AGAGAGAGA AC RSP00979 Mean Expected Number 0.008 +strand -6 : +4 CCATtCAACT Totally 5 motifs of 3 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ubiquitin-conjugating enzyme, putative |LOCUS: AT1G16890 |PROD: the same as GENE |complement(5776339..5778448) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.32 C - 0.10 1 attttcttag tagttttcaa tcatggttaa aaaagtattt gaatatggaa 51 attattctta aaaaaattga atatgaatat ggaagagaac ttacagaaaa 101 ttatttacta aatgtattcc ttacatattt catgtaatta tatattttta 151 ctagcataaa agcatcaatt tatttccgta aaggaaaaaa agaaagaatt 201 AAAAGGATCA AAGGGGCACG AAACTAGAGA CGACGAAGCG TACTCGATTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00941 Mean Expected Number 0.005 +strand -186 : -179 TTTCAATC AC RSP01594 Mean Expected Number 0.005 -strand -179 : -186 GATTGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RAB11 |LOCUS: AT1G16920 |PROD: Ras-related GTP-binding protein, putative |complement(5787323..5789242) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.31 C - 0.27 1 atggtgattt aatgatcaaa tttttagtct tcaccctgct aatacagcga 51 aaacctgtaa aaagtaaaaa ccttttgata taacaacagt cacacacgcg 101 cCCAATagat caacggacca gatctcgatt acagttacag actgtcttgt 151 cacaagccgt cactttaaca catacaccaa tttcttctca gcgttatttc 201 AAATCTCAGT TTACACCTTC ACACTGCTGC GTCTCTCTCT CTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -142 : -131 AAAAAGTAAAAA AC RSP00431 Mean Expected Number 0.006 +strand -74 : -63 GATtACAGTTAC AC RSP00523 Mean Expected Number 0.007 +strand -107 : -101 ACACGCG AC RSP00773 Mean Expected Number 0.001 +strand -196 : -187 TGATTTAATG AC RSP00837 Mean Expected Number 0.001 +strand -94 : -85 AGATCaACGG AC RSP00864 Mean Expected Number 0.004 -strand +50 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +48 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +46 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +44 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +42 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +40 : +32 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +49 : +33 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +47 : +31 GAGAGAGAGAGAGAGAc AC RSP01767 Mean Expected Number 0.005 -strand -175 : -183 TAAAAATTT Totally 14 motifs of 8 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SOUL heme-binding family protein |LOCUS: AT1G17100 |PROD: the same as GENE |5844729..5846215 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.20 C - 0.24 1 tcttaaatgt gtgtacccgt ggcaatttca aactcagaac tcatgacaaa 51 cggttcatag gcacacacat atacaagaac aaaaaaatga caaaaaggtc 101 gaaacttttt tacacacaca caaaacctat ccgaagatga accacacatt 151 cacacgtaac aaataatcta tattaccggt aaaaggccgc gtaaacaaag 201 AAAGAAGTAA GCTACCTAGA TAAAACCGCC ATGGCCACCG GTTTAGGCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01686 Mean Expected Number 0.008 -strand -188 : -193 CACACA Totally 1 motifs of 1 different REs have been found Description of REs found 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: integral membrane family protein |LOCUS: AT1G17200 |PROD: the same as GENE |5878422..5879984 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.33 C - 0.16 1 gattgtagtg gagtgatcaa tattttgctt tttagcgggg agttatcatt 51 ttcgaaggct ttaaatgttt ttttttgctt gggaaatgtg aggagtgtca 101 tgaatatcga aattaaatgc attcaccaac cctatcgatc caacacttcc 151 ctttagttaa tgtcacacat taaaatcata tccacttgtt tataaccaca 201 TTTTCTCTCA AAATCCATAA AAAGAGAGAG AGATAAATAA AGAGAAAACT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.002 -strand -1 : -12 TGTGGTTATAaA AC RSP00522 Mean Expected Number 0.006 +strand -19 : -13 CCACTTG AC RSP00642 Mean Expected Number 0.010 +strand -87 : -80 TAAATGCA AC RSP00792 Mean Expected Number 0.005 -strand -119 : -128 CCAAGCAAaA AC RSP00864 Mean Expected Number 0.001 +strand +23 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +25 : +33 AGAGAGAGA AC RSP00872 Mean Expected Number 0.008 -strand -32 : -41 TGTGTGACAT AC RSP00950 Mean Expected Number 0.000 +strand -79 : -69 tTCACCAACCC AC RSP01079 Mean Expected Number 0.000 +strand -80 : -69 ATTCACCaACCC AC RSP01209 Mean Expected Number 0.007 -strand +24 : +15 CTTTTTATGG AC RSP01454 Mean Expected Number 0.006 +strand -76 : -70 ACCAACC AC RSP01751 Mean Expected Number 0.001 +strand -20 : -12 TCCACTTGT Totally 12 motifs of 11 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 997. Group TF: DcMYB1 /AC: RSP01079//OS: Daucus carota /GENE: DcPAL1/RE: box-L1 /TF: DcMYB1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: oligouridylate-binding protein, putative |LOCUS: AT1G17370 |PROD: the same as GENE |complement(5951535..5955030) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +212 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.21 T - 0.38 C - 0.17 1 caggggtgtt tattgtaatt agttgtcagg ttcaagttca ttgaaggcgt 51 gtctgatttg gacagtgatt gggcctgagc cataagttta acgtgggacg 101 agttcATTGG ctgttgcttt ttaaattttc ttacagcctg tgactttagc 151 taatcgatgt gtaaaaataa taaatccaat aaaattcgta agagccactc 201 GATTGCTTCC TTCGCTTTCT ATCAAGAGAC TTCCTTTTTT TTTTCCTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00024 Mean Expected Number 0.007 -strand -29 : -36 TATTATTT Totally 1 motifs of 1 different REs have been found Description of REs found 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G17380 |PROD: the same as GENE |complement(5955481..5957205) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.44 C - 0.11 1 ggctttatgt aagatttgtt ttttggtttt tttggttgtt gttaataaat 51 ttattattga gaagtttaat tctattttgg tcacaatata ttgaaatatt 101 tttaagaaac taaaaagttc ctatttattt ttgttttcat taatttatga 151 gaggctatta aagtcacaga aacttattgg gtgaatgagt ttataaacac 201 ATGAGCTATT GAGCTAGTAG CCTCTTGTAC TCTTCCATTT TACGCGCAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00131 Mean Expected Number 0.009 +strand -5 : +2 AACACAT AC RSP01030 Mean Expected Number 0.006 +strand -33 : -26 AGAAACTT AC RSP01559 Mean Expected Number 0.002 +strand +42 : +47 ACGCGC Totally 3 motifs of 3 different REs have been found Description of REs found 129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT1G17430 |PROD: the same as GENE |5982260..5984004 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.31 C - 0.21 1 tttcatatat agatttgttt gttaaaatgt taaataaact ttttatagaa 51 ttagatgtcg aaacacttaa catgcacttt gccacgtttg aacaaaactc 101 aaaTCAATaa catcgcttaa acaagattta accggaatta accggaccgg 151 tagaaactgt gtttgaaatt taaaagcaca ctctctctat cgccacaccc 201 ACACCTTCTC TGCAAAAACA AAAGATTTCC ACTTTTCTTA AAAATGGCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01034 Mean Expected Number 0.004 -strand -114 : -120 ACGTGGC Totally 1 motifs of 1 different REs have been found Description of REs found 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G17455 |PROD: the same as GENE |5997173..5998468 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +752 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.32 C - 0.22 1 cgtcagcaag ttaaaacatt gattcctcac gcttctaaac tacgggccgt 51 ttttacttcc aatcgaaacg acatgctgtt tatgcgaatt aggcacaaac 101 aacacgaatc ttttgcgggt cgggtttgtt cgatccagat gtctggcttc 151 tctaacctcc gtatctctct ctgcaaaaag cgtgattcag agtaaataca 201 GAAAAATATA TCGTTTTTAT AAATGGCATT TTTTAGAACA TATTAGCTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand -29 : -37 AGAGAGAGA AC RSP00891 Mean Expected Number 0.004 +strand +3 : +11 AAAATATAT Totally 2 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G17490 |PROD: the same as GENE |6008582..6009409 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.37 C - 0.22 1 taggttttct cttttatatt atttgttcca gaaattccct gagaacccct 51 ctacttttgt attctcaatt tttaacccat aagttattag actgggcaac 101 TCAATccatt ttagtgtcgg gtttgcacaa tacccgagtc ggttcgatct 151 actcgttaat ctgttattat tacattggat ggttcacatt tgtacacact 201 ATTTCAAGCT CAGACCAAAC TAAACAAACT CGTCTACATT TGAAGAACTC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G17510 |PROD: the same as GENE |complement(6023497..6024302) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.35 C - 0.13 1 ccttgagttt tgccattacc aagaaattca tataaatcag ttagaatttt 51 cattacataa tcattatata tcttaataga caaaccaaaa atcatctttt 101 ctattctctg cgttattatt tatgaaattc agaatttata gtttgggtaa 151 gaattgatac agattaaagt tacggggtta aatggataac cgaataaaat 201 AGTGGTAGGG TGGTTTCACT TAAGAATTTG CTCATAACGG AGATCTGCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01006 Mean Expected Number 0.003 -strand +14 : +8 ACCACCC AC RSP01601 Mean Expected Number 0.008 +strand +14 : +21 TTTCACTT Totally 2 motifs of 2 different REs have been found Description of REs found 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: HLL |LOCUS: AT1G17560 |PROD: ribosomal protein L14 family protein |complement(6037457..6038685) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.24 C - 0.23 1 gcccctggtt ttaaaatgta ggaaaataag gtaaatacga aaaaaaagga 51 aaaacgtagg cggcaggatt cgaacctgcg cgggcaaagc ccacatgatt 101 tctagtcatg cccgataacc actccggcac gcctactttt gacaacgtca 151 ccactttttt actatataat ttaatccatg agtaaaatca ttacaagccc 201 AAATGATCGC TGCGACAGCG AGTGTGTGAC GTTAAACCCT AAATCTGGTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +42 : +34 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +34 : +42 AAACCCTAA AC RSP00872 Mean Expected Number 0.005 +strand +23 : +32 TGTGTGACgT AC RSP01303 Mean Expected Number 0.005 +strand +33 : +42 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand +33 : +42 TaAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G17590 |PROD: the same as GENE |complement(6050215..6052561) |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +584 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.21 T - 0.29 C - 0.10 1 ttttgacgat agttttactt tgtaaagtgg ataggcagat aactagataa 51 gtgtttactt tgttaagtga acaaaataat aagtcaataa gattagaaaa 101 ctaatatatt aattaagcat taaaaatact aatgaaggtg gcggtactgc 151 taataatgga gctggtgatt ttgttggaaa ggtaatgact ttataagaga 201 GAAAATTGTG AGTGACGGAA ATGAAGCATC AAAAGAATAC ACACACACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00595 Mean Expected Number 0.003 -strand -83 : -91 GCTTAATTA AC RSP00869 Mean Expected Number 0.004 +strand -180 : -172 TGTAAAGTG AC RSP01210 Mean Expected Number 0.007 +strand -143 : -134 CTTTGTTAAG AC RSP01739 Mean Expected Number 0.001 -strand -111 : -123 TTATTGACTTAtT Totally 4 motifs of 4 different REs have been found Description of REs found 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1546. Group TF: WRKY11 /AC: RSP01739//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G17650 |PROD: the same as GENE |complement(6069470..6072005) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.26 C - 0.21 1 atagtgaggc ttttttcgag aaaaaacact gttgataaaa atatacaaac 51 acaagcatca tgactcatgg gggataaatg cacttgaacc gaccggtaca 101 attatatctg cttgtgaatt agctttaaac cgaagcatat gcaacgcggc 151 cagtggattt tgttcctcag taaaaatctg tcagtttccg cctcgaaatg 201 TGAGAATTTC GGCCACAGTC TACTAAACAA ACGCACTGGC CAGTGGCTAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.002 -strand -51 : -60 GCCGCGTtGC AC RSP00135 Mean Expected Number 0.001 -strand -156 : -167 tATATTTTTATC AC RSP00642 Mean Expected Number 0.008 +strand -126 : -119 TAAATGCA AC RSP00664 Mean Expected Number 0.001 -strand -133 : -141 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 +strand -141 : -133 ATGACTCAT AC RSP01278 Mean Expected Number 0.003 -strand -133 : -141 ATGAGTCAT Totally 6 motifs of 5 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SNF7 family protein, contains Pfam domain |LOCUS: AT1G17730 |PROD: the same as GENE |6099097..6100308 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.27 C - 0.19 1 atggtgaata atcaaaactg aaacgaataa gtcaaaggag tgtttttttt 51 ttataactac taaccactca gactcagtga cggattaaaa gattaaaact 101 taaaccggat ataaccgaat aatagaacca gtcagtGCAA Ttcgatttag 151 gacataatgt taggaagcct cctcgtttaa aagttaaaac ctctctttct 201 GCGGAAGAAA CACGCTTGAG ATATCTTTCC CCAAATTCGA AAGAACCCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 -strand -1 : -9 AGAAAGAGA AC RSP01304 Mean Expected Number 0.004 +strand +42 : +51 aGAACCCTAA Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PGDH |LOCUS: AT1G17745 |PROD: D-3-phosphoglycerate dehydrogenase / 3-PGDH |6100957..6105258 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +193 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.40 C - 0.14 1 ttattaataa ggatgcacat gatgatgaat attaaccgta atatactaat 51 atagatgaca atgtatttca gtgctaaatt atagtaacaa ttaattgaat 101 gcttaaatga atcttttatt atatactact ttatatgtgt tttttttgtt 151 ttaattgaga caatgatgat gcacctagac aagaacgtcc tactctctgt 201 GCATGTGCTT CTCATTTTAT TTACTCTTTT ACCAAACAAA CTGTTCAACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 -strand +5 : -2 CATGCAC Totally 1 motifs of 1 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G17930 |PROD: the same as GENE |complement(6166213..6168832) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +407 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.37 C - 0.15 1 ctgtaaattt gtaattctta ccaaattacc agttatttaa aatataaaaa 51 atatcattta tattttcatg aaagaacacc gaattttcca tttacacaaa 101 agtttagtat atttgtaaaa gtttaaaatt atatcaaaat tacatctaat 151 gaatttaatg aataaatgat gtaaaagtaa aaagacgatt ttttttttta 201 TTTACCACAA CCGGATTCTT CACTCTCTCT GCGCAGCGAT CTCAACACTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.007 +strand -87 : -80 TGTAAAAG AC RSP00029 Mean Expected Number 0.007 +strand -31 : -24 TGTAAAAG AC RSP00778 Mean Expected Number 0.003 +strand -42 : -33 TGAATAAATG AC RSP00870 Mean Expected Number 0.010 +strand -87 : -78 TGTAAAAGTt AC RSP00870 Mean Expected Number 0.010 +strand -31 : -22 TGTAAAAGTa AC RSP01621 Mean Expected Number 0.009 -strand -95 : -104 TAaACTTTTG Totally 6 motifs of 4 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G17970 |PROD: the same as GENE |6184897..6187465 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.31 C - 0.16 1 tgcccaaaaa aagttaaaaa cccagagaaa tactcaaatt aacctaaaca 51 atatctctta taaaatcatt atttctaatt tggtagtatt cacaaaagat 101 atgcatgagc tgattttgtt tggaatctca tactaatggt tgcatgtaaa 151 aacaaaaact aaaaaatctt taatagtatt atataggaaa agctataatc 201 ATTATACAAA AACTGTATCA TCATCATCAT CAAGCTTGAA ATCACTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.006 -strand -55 : -61 CATGCAA AC RSP00597 Mean Expected Number 0.007 -strand -158 : -169 GTTAATTTGaGT AC RSP00741 Mean Expected Number 0.006 +strand -193 : -182 AAAAaGTTAAAA AC RSP00798 Mean Expected Number 0.000 -strand -16 : -34 TATATAATACTAtTAAAGA AC RSP01209 Mean Expected Number 0.002 -strand -188 : -197 CTTTTTTTGG AC RSP01470 Mean Expected Number 0.008 -strand -93 : -102 TCATGCATaT AC RSP01776 Mean Expected Number 0.007 -strand -24 : -34 ACtATTAAAGA Totally 7 motifs of 7 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 751. Group TF: SURF /AC: RSP00798//OS: Solanum tuberosum /GENE: patatin 21/RE: SURE-2 /TF: SURF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G18010 |PROD: the same as GENE |6199891..6201477 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.33 C - 0.16 1 acttttattt tcgtagaaag aacgtaacag ataacattca ttgacatgtt 51 cttttcgctc tagttattac agtttactag gattagatta aaccagtaga 101 gagcaTCAAT tttgttttgt tagaaaatta agttttagtt aatatttatt 151 cccatgaaaa tgtccgctac tactaaagaa agaatcgtaa cagacggatc 201 ACAAACAGTC ACAGATCCGA GCCCTGTTTT GAGTTTACGA GAAGAATATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00842 Mean Expected Number 0.001 -strand +21 : +14 CTCGGATC Totally 1 motifs of 1 different REs have been found Description of REs found 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G18170 |PROD: the same as GENE |6254222..6255683 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.37 C - 0.17 1 tcattgagaa ttgaaatttc atatctctta tatacgaaat tcaaagtaaa 51 ttgttcatat accctcaata actaattcac tgtttatcta ttttatcttg 101 gcgcgagttt atcatttctg ttaattatga ttatttcgtt actaACAATa 151 accaaatact gtaaatcgaa taaattcgtt cgccttcttt cttgaaacat 201 GATCATCACT CGATCAGGAT AGCGTTTAAA AAGGAACCAA AAATAATAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00631 Mean Expected Number 0.001 -strand -45 : -57 TtTGGTTATTGTT Totally 1 motifs of 1 different REs have been found Description of REs found 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: basal transcription factor complex subunit-related |LOCUS: AT1G18340 |PROD: the same as GENE |complement(6311476..6313924) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.32 C - 0.20 1 taaaaggcgg tttagttcat aaagaaaact gggcctatct aaaaatttga 51 actaatgcca tatttgggct tagtaagccc ggcttacgat acgacgttta 101 tagtcggatc tgattcggat ccaaacccgt ttgatggatc cggctcctac 151 caaatcactt cagatttctg tataagctaa aaatccttga atttttcagt 201 AAGTTACTAT AGCATCCGAG AATTTCATTC TTTAACTCTG GTTCGTAATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.008 -strand -8 : -15 AATTCAAG AC RSP01767 Mean Expected Number 0.006 +strand -161 : -153 TAAAAATTT Totally 2 motifs of 2 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATARP4 |LOCUS: AT1G18450 |PROD: actin-related protein 4 (ARP4) |6348100..6351966 |SUPPORT | 20 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.27 C - 0.21 1 aagcatagac attttatttg gcaataaatc agcttcgttt actgcaaaaa 51 gggtggtcac aaaagttggt tcggtttaga aaaattgtgt tcggttcggt 101 tagtttcttg aataatttaa acccgacgga ttaaatgaga ggttttgtgg 151 tccccacaac tcgaactcag taaaaccaag tcgacccgat tcagctggat 201 CCGAGATTAC AGAGAACCCC GTCCCGTGTT TAAACCCTCC GGCGACAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00842 Mean Expected Number 0.003 -strand +5 : -3 CTCGGATC AC RSP00895 Mean Expected Number 0.002 +strand -54 : -47 GTGGTCCC AC RSP01006 Mean Expected Number 0.009 -strand -144 : -150 ACCACCC Totally 3 motifs of 3 different REs have been found Description of REs found 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G18470 |PROD: the same as GENE |complement(6356126..6360159) |SUPPORT | 14 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.20 T - 0.25 C - 0.13 1 agttaacgaa agtgacattg agaacgcgtt tgcgtttcag ttatggcgtg 51 caaacaaagc taaacaaaaa attcagagag attaaaaaaa aacaaaagga 101 atccaaagga aataaatgat tttgtttgct tttgcttgca aataaaaatc 151 attaaaaaaa aacgaggcgt aacaggaagg agaagaagca ggggtccatc 201 ATCAAATACA ACATTGTAGC AATTGCGTTT TCGACTTTAT AGAGATATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00140 Mean Expected Number 0.005 -strand -48 : -60 AATgATTTTTATT AC RSP00404 Mean Expected Number 0.005 +strand -172 : -166 TTTGCGT Totally 2 motifs of 2 different REs have been found Description of REs found 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calcineurin-like phosphoesterase family protein |LOCUS: AT1G18480 |PROD: the same as GENE |6361622..6363000 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.25 C - 0.20 1 cctacttaat tcatgagcaa caaaacaatg ggcgtggcct tgtaggagat 51 ccaaagccca acttgaacaa tatctagaag atacacagac aaaaagagtc 101 actcactaat tggcttcgtt tATTGGctag tcaatgaatt aatttaataa 151 actgcttaat aaggaaactt ataaaggcgc attgttcttg gccgccattt 201 ATCACGGAAA ATGTCAAGCA GAGAAAACCC TAGCGGAATC TGCAAAAGCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00961 Mean Expected Number 0.008 +strand +41 : +48 TGCAAAAG AC RSP01073 Mean Expected Number 0.001 +strand +15 : +23 CAAGCAGAG AC RSP01205 Mean Expected Number 0.009 -strand -24 : -33 CCTTTATAAG AC RSP01205 Mean Expected Number 0.009 -strand -37 : -46 CCTTATTAAG AC RSP01208 Mean Expected Number 0.001 -strand -170 : -181 CCATTGTTTTGT Totally 5 motifs of 4 different REs have been found Description of REs found 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: senescence-associated family protein |LOCUS: AT1G18520 |PROD: the same as GENE |6374925..6376309 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.06 T - 0.22 C - 0.31 1 agtaagacct agtcaaaatc taattaaacg acttcctcta aactaaagga 51 tcttcttaac ccccacacga tctctaaaac caatggctaa taatctccac 101 taatatcatc aacccactac caaaaaagca accgtttccc tctttcccca 151 ataaccacga ctccacacac ttaaaaacac acacacacac taaaaacgtt 201 ACGAAACATA ATTATCAAAT TCAAACAACA ACAAAAAAAC ACTCTCTCCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.005 -strand -185 : -194 TTGACTAGGt Totally 1 motifs of 1 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycine-rich RNA-binding protein, putative |LOCUS: AT1G18630 |PROD: the same as GENE |6414717..6416445 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +501 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.21 T - 0.24 C - 0.15 1 tactcaattt aagaagaaga gagtaaaagg aaattttagg ggtttaacaa 51 aaaaaaaaaa aaaaactaaa cctttgggga agaaaaaaaa aagctactta 101 caacttcgtc gccgatcagc tgaatcaacg gtcaagatca actcaaaaca 151 ttaataaacg gactagattg tatcttcacg aatcggactc gtttacataa 201 AGTCAGGGTT TTTGCACTAT TGGGCGAGAA TTGAAAGACG TTGGGGGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00713 Mean Expected Number 0.009 +strand -84 : -78 CAGCTGA AC RSP00713 Mean Expected Number 0.005 -strand -79 : -85 CAGCTGA AC RSP01202 Mean Expected Number 0.001 -strand -124 : -131 CCAAAGGT Totally 3 motifs of 2 different REs have been found Description of REs found 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PSP |LOCUS: AT1G18640 |PROD: 3-phosphoserine phosphatase (PSP) |complement(6415570..6418676) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +439 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.31 C - 0.18 1 taaggagacg gaaatatatt tatttaaggt tacgttacct tcaccggaat 51 tgttatgacc ggagataatc aaatctgaat ttctgattgt ctgaattgac 101 cccaaacaca aCCAATcaaa acaaaacaca aaggataaaa atgtcatttt 151 gacgggttaa tgtatataac taataaaggg taaaattgtc atttgacttc 201 ACCAACCAAC AAACACTCTT CTCAGTGGCT TTTTTTTTAA TTGATCGGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.008 +strand -125 : -115 TGAATTTcTGA AC RSP00230 Mean Expected Number 0.006 -strand -165 : -174 AACgTAACCT AC RSP00467 Mean Expected Number 0.004 -strand -99 : -108 gGGTCAATTC AC RSP00792 Mean Expected Number 0.008 +strand +2 : +11 CCAAcCAACA AC RSP01598 Mean Expected Number 0.007 +strand -59 : -52 TGTCATTT AC RSP01598 Mean Expected Number 0.007 +strand -14 : -7 TGTCATTT AC RSP01639 Mean Expected Number 0.009 +strand -17 : -8 AATTGTCATT Totally 7 motifs of 6 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl hydrolase family protein 17 |LOCUS: AT1G18650 |PROD: the same as GENE |complement(6418852..6420521) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.31 C - 0.21 1 aaagaatttg gaaacaattc gagaccagct agtaatggaa aactataatc 51 aagaacattg tttgtaagaa ttcttaaata cggtagtaga gagactagaa 101 taactagtaa taaagacatc ATTGGtccgc aggatctaag caaataaaaa 151 gaatttcttt ttcactgtct tcaacgcagt gactctcttt ctctctcttt 201 ATTCACACCT CTTGTTACCT TCAAAACCTT CTCTCAATCT CCTCCATTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.005 +strand -134 : -123 AGAATTcTTAAA AC RSP00158 Mean Expected Number 0.010 -strand -55 : -65 TATTTGCTTAg AC RSP00653 Mean Expected Number 0.003 +strand -12 : -2 TTCTCTCTCtT AC RSP00861 Mean Expected Number 0.002 -strand -9 : -17 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -3 : -11 AGAGAGAGA AC RSP01093 Mean Expected Number 0.003 +strand -66 : -56 TCTAAGCAAAt AC RSP01162 Mean Expected Number 0.001 +strand -56 : -44 TAaAAAGAATTTC AC RSP01602 Mean Expected Number 0.008 +strand +32 : +39 TCTCAATC Totally 8 motifs of 8 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: nucleosome assembly protein (NAP) family protein |LOCUS: AT1G18800 |PROD: the same as GENE |complement(6481104..6483587) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.29 C - 0.20 1 atcaccatta atctatatat ggatgggtag attctattat ttttaaatca 51 caaaaccaat tatataaaaa taaaataaaa aacctaaaca aaagaaacat 101 atgaaattcc cggctctaaa tgacaaaaat acccttcttc tgtaacgtga 151 cgtaatctaa ttggttaaca aaacccccaa aaccctaaat cagtttgccc 201 AGATTCACGC ATCACACAAT CGAGTTTTTA GGGTTTTAGC GGTTGCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.003 +strand -53 : -46 TGACGTAA AC RSP00117 Mean Expected Number 0.002 +strand -166 : -154 tATTATTTTTAAA AC RSP00211 Mean Expected Number 0.006 +strand -44 : -34 CTAATTGgTTA AC RSP00260 Mean Expected Number 0.004 +strand +27 : +33 TTTAGGG AC RSP00279 Mean Expected Number 0.000 +strand +28 : +36 TTAGGGTTT AC RSP00279 Mean Expected Number 0.005 -strand -13 : -21 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -21 : -13 AAACCCTAA AC RSP00369 Mean Expected Number 0.000 -strand +36 : +28 AAACCCTAA AC RSP00400 Mean Expected Number 0.007 +strand +40 : +45 CGGTTG AC RSP00416 Mean Expected Number 0.005 -strand -176 : -182 CATCCAT AC RSP00716 Mean Expected Number 0.007 +strand -150 : -142 CAAAACCAA AC RSP01092 Mean Expected Number 0.006 -strand -164 : -174 ATAGAATCTAc AC RSP01303 Mean Expected Number 0.010 +strand -22 : -13 aAAACCCTAA AC RSP01303 Mean Expected Number 0.001 -strand +37 : +28 AAAACCCTAA Totally 14 motifs of 11 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G18850 |PROD: the same as GENE |complement(6504797..6506412) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +294 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.26 C - 0.21 1 tagaaacatt ttctacaatt agcaaaagaa aaaaaaaagg ccagaaaaaa 51 aaaaaattca gctaaattcg tcgatgccca aaatccgata acaccgtaat 101 aagtaagaga atacaggggt atatttggaa acagattaaa acgcagaaag 151 tagtgttcca tttacaaaac cctaaaccct aattgctctc gccttctttt 201 AGCTTTTCAT CTTTACCTGT CTCTGCCCTT AACCTCACAC AGATATCGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.005 -strand -19 : -27 TTAGGGTTT AC RSP00279 Mean Expected Number 0.005 -strand -26 : -34 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -34 : -26 AAACCCTAA AC RSP00369 Mean Expected Number 0.005 +strand -27 : -19 AAACCCTAA AC RSP01303 Mean Expected Number 0.010 +strand -35 : -26 aAAACCCTAA AC RSP01303 Mean Expected Number 0.010 +strand -28 : -19 TAAACCCTAA AC RSP01304 Mean Expected Number 0.006 +strand -28 : -19 TaAACCCTAA Totally 7 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: germin-like protein, putative |LOCUS: AT1G18980 |PROD: the same as GENE |complement(6557245..6558036) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.30 C - 0.21 1 gaaaacatag ttatcgtgtt agacagagca tcaaacttga accataagta 51 ataaacaaac aatattttca ggtccatttg cttacctcaa ctaatctcca 101 attatttttt agactaaaaa aatagaagaa gtcaaaagaa actttgccaa 151 agaccaacac aaaccactat atatctacaa aacagaggat gctctgtttt 201 ATATTTCTCA TCAATAGCCA TGACTACTCT CCAAATCTCT TCTTCTCTTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DNA cross-link repair protein-related |LOCUS: AT1G19025 |PROD: the same as GENE |6568844..6570930 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.30 C - 0.20 1 atatataaaa ataagaaacg atttatttcg aagtatataa cgtgtaattt 51 tataaatttt acttttaaga tcggagggta attttccctc gcttctgcag 101 aaACAATttt tatccgccgg atctgaagtg gttcttcttc agagtaaatc 151 aatcggagaa cccaaaaccc tagaaagcaa ccagaatcac atttcactct 201 AAAATTATCG GCGGAAGCAG AAACCCTAGT CATTGGTTAT ATCCGTCGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01631 Mean Expected Number 0.001 +strand -31 : -21 CTAGAAAGCAA Totally 1 motifs of 1 different REs have been found Description of REs found 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: small nuclear ribonucleoprotein, putative / snRNP |LOCUS: AT1G19120 |PROD: the same as GENE |6608112..6609338 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +167 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.19 T - 0.29 C - 0.14 1 gaagaatgac tgagatttct tgttaaataa taaaatgaaa tgaaggaaaa 51 cccaaatgca aaataaaatg ggttgattat gcaatagtta cgaagttttg 101 gggttttaat gtatttttcc taaaATTGAa aaaaaaactc agtctgacca 151 aactttgaca gaacagaatc gtgcgagccg tcagacttaa cgaaaacgat 201 CCATAGATCT CAAGTCTCTC TCTCTTAGTG AATAAATTAG GGTTCGTTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -85 : -70 TTTCCTAAAATtGAAA AC RSP00080 Mean Expected Number 0.004 -strand -70 : -85 TTTCaATTTTAGGAAA AC RSP00864 Mean Expected Number 0.000 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +23 : +15 AGAGAGAGA AC RSP01304 Mean Expected Number 0.003 -strand +46 : +37 cGAACCCTAA Totally 5 motifs of 3 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19130 |PROD: the same as GENE |complement(6609360..6610593) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.31 C - 0.14 1 aacagagttg gaaacttgta attttggtct acttcaattt ggtagggtgt 51 ttattgttcg aaaacaaaca tatgggcact tattgtagag acagcttttt 101 taatctttta ctttgacccc aaaaagattt ggagaagTCA ATtttggaca 151 gcagactact aaagagtaaa gactagtaac aacaaacctg aactcatgcc 201 AAGTTAGAAT TGAGATTTGG AGTTTCGACA AAGCTTGAGA GAGATCGATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.007 +strand +16 : +23 TTTGGAGT Totally 1 motifs of 1 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19140 |PROD: the same as GENE |complement(6610713..6612507) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.31 C - 0.13 1 agaagaattt tgtgaagcca gtgttacgtg acacgtgtac ggttcgatgt 51 gaaggataat attaacatgc tgattctgaa ttctccaatg gtaatggggt 101 tctttataaa atttaaattt gttttggtca tttaagaaaa tatgagaaat 151 agtgggccaa taaaataatt aataaattaa gaaaacgccc aattcacttc 201 GTTAGCGGGG TCGGTTACGA AGAAAGGAAG CTCTTTTACA TTCTCGTGGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.005 -strand +40 : +33 TGTAAAAG AC RSP00158 Mean Expected Number 0.009 -strand -59 : -69 TATTTtCTTAA AC RSP00340 Mean Expected Number 0.004 -strand -162 : -171 TaCACGTGTC AC RSP00524 Mean Expected Number 0.007 +strand -170 : -164 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -163 : -169 ACACGTG AC RSP00862 Mean Expected Number 0.004 +strand +21 : +29 AGAAAGGAA AC RSP00870 Mean Expected Number 0.007 -strand +40 : +31 TGTAAAAGaG AC RSP01035 Mean Expected Number 0.007 -strand -165 : -171 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -170 : -163 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -163 : -170 ACACGTGT AC RSP01401 Mean Expected Number 0.002 +strand -184 : -174 GcCAGTGTTAC AC RSP01678 Mean Expected Number 0.004 +strand -43 : -32 CAATAAAATAaT AC RSP01717 Mean Expected Number 0.000 -strand -161 : -172 GTACACGTGTcA Totally 13 motifs of 11 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: LHCA2*1 |LOCUS: AT1G19150 |PROD: chlorophyll A-B binding protein |6612740..6613963 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.31 C - 0.24 1 ttattttatt ggcccactat ttctcatatt ttcttaaatg accaaaacaa 51 atttaaattt tataaagaac cccattacca ttggagaatt cagaatcagc 101 atgttaatat tatccttcac atcgaaccgt acacgtgtca cgtaacactg 151 gcttcacaaa attcttctgg ataacaaagc ccataacata cgagttccat 201 ACAATCAAAG ATGACACTAG CTAGACATTT TCGTTTTCAT CTCCCCACGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 +strand -174 : -164 TATTTtCTTAA AC RSP00340 Mean Expected Number 0.004 +strand -71 : -62 TaCACGTGTC AC RSP00503 Mean Expected Number 0.002 +strand +17 : +24 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand +24 : +17 CTAGCTAG AC RSP00524 Mean Expected Number 0.006 +strand -70 : -64 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -63 : -69 ACACGTG AC RSP01035 Mean Expected Number 0.006 +strand -68 : -62 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -70 : -63 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -63 : -70 ACACGTGT AC RSP01401 Mean Expected Number 0.001 -strand -49 : -59 GcCAGTGTTAC AC RSP01717 Mean Expected Number 0.000 +strand -72 : -61 GTACACGTGTcA Totally 11 motifs of 8 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19180 |PROD: the same as GENE |6622085..6623611 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +218 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.23 C - 0.18 1 caacaaacaa ccaatggata aattaggctc gtgaaggagg gcaaactcgt 51 aatttcaaag aaacggaaag cgtcagaacg tggagaacag tgaaccgaga 101 cacattcccg atttttctaa agaaacaaaa taaaacacgt gttttttata 151 ccataagtaa agtagtagta tttattaaac tattaatata tagctttgtt 201 ATATTGGAGG TAGGAAGAAG AACTCTGCAA CCAAACCAAC CAACCCCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.010 +strand -66 : -60 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -59 : -65 ACACGTG AC RSP00651 Mean Expected Number 0.002 +strand +35 : +45 ACCaACCAACC AC RSP00782 Mean Expected Number 0.000 +strand -67 : -58 AACACGTGTT AC RSP00782 Mean Expected Number 0.000 -strand -58 : -67 AACACGTGTT AC RSP00978 Mean Expected Number 0.001 +strand -67 : -58 AaCACGTGTT AC RSP00978 Mean Expected Number 0.003 -strand -58 : -67 AaCACGTGTT AC RSP01185 Mean Expected Number 0.001 +strand +36 : +47 CCAACcAACCCC AC RSP01256 Mean Expected Number 0.002 +strand -66 : -59 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -59 : -66 ACACGTGT AC RSP01600 Mean Expected Number 0.007 +strand -148 : -141 TTTCAAAG AC RSP01702 Mean Expected Number 0.008 +strand -67 : -58 AACACGTGTT AC RSP01702 Mean Expected Number 0.005 -strand -58 : -67 AACACGTgTT Totally 13 motifs of 8 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 737. Group TF: G-box binding TF /AC: RSP00782//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 6 /TF: G-box binding TF 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19240 |PROD: the same as GENE |complement(6649089..6650411) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.36 C - 0.13 1 acgaattgtt gtgtgatgga tgtataatta atgaataaat aaatgtatgt 51 gtaaagtaca tgatatttta tataataata ttgtattatt gtatgacctt 101 ggtcaaggat tattttcaac tagtaattat gaaattCCAA Ttttgtcctt 151 ttggtcaacg agaagtcaat ttagcaatcg cttccttcat gactggaatc 201 ATCATTGAAC CCTAAACCCT AATTGATCGG CCAGAAATGG AGGGTTTGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.006 -strand +16 : +10 TTTAGGG AC RSP00279 Mean Expected Number 0.001 -strand +22 : +14 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +14 : +22 AAACCCTAA AC RSP01127 Mean Expected Number 0.004 -strand -6 : -22 CAGT-- +9 bp --AGCG AC RSP01303 Mean Expected Number 0.002 +strand +6 : +15 TgAACCCTAA AC RSP01303 Mean Expected Number 0.002 +strand +13 : +22 TAAACCCTAA AC RSP01304 Mean Expected Number 0.001 +strand +6 : +15 TGAACCCTAA AC RSP01304 Mean Expected Number 0.001 +strand +13 : +22 TaAACCCTAA Totally 8 motifs of 6 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G19310 |PROD: the same as GENE |complement(6676225..6677661) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +566 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.29 C - 0.23 1 catccattag atttgttagt tgttacatta tctctcgtta tcaaccaatc 51 caacggttaa gacgatattg ttgacttgaa acagccacta gttctccgtc 101 acgtgcacac atgttcccac gtggaATTGG gggaccagtc caaaagacac 151 gtcaattcgc gggtaattaa ataaaacaaa acaggtttaa tacaaatatt 201 AATATTCTGA AAATATCTTT CTCTCGATGA AACTTGTCTC CTCCGGCCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.008 +strand -108 : -99 TCTcCGTCAC AC RSP00377 Mean Expected Number 0.007 +strand -158 : -149 AACCAATCCa AC RSP00682 Mean Expected Number 0.001 +strand -85 : -76 cCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -84 : -77 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -77 : -84 CCACGTGG AC RSP00858 Mean Expected Number 0.005 +strand -39 : -32 GGTAATTA AC RSP00917 Mean Expected Number 0.002 +strand -131 : -122 GTTGACTTGA AC RSP00938 Mean Expected Number 0.000 +strand -86 : -75 TcCCACGTGGAA AC RSP00960 Mean Expected Number 0.003 -strand -179 : -186 CAACTAAC AC RSP01035 Mean Expected Number 0.010 -strand -49 : -55 ACGTGTC AC RSP01046 Mean Expected Number 0.002 +strand -155 : -147 CAATCCAAC AC RSP01258 Mean Expected Number 0.004 -strand -47 : -54 TGACGTGT AC RSP01734 Mean Expected Number 0.007 -strand -76 : -82 TCCACGT Totally 13 motifs of 12 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: methyltransferase MT-A70 family protein |LOCUS: AT1G19340 |PROD: the same as GENE |6684742..6687107 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.33 C - 0.14 1 tttattgttt ttaaacataa acctacgaaa tctagaggct ggaacaaaat 51 ccattaatta ccgggaaatt ttcagaggat ttgcactaaa ttaggggtta 101 cttgttacat ttcaaaatta ggtgactaat tgtggTCAAT tatgaaaatt 151 cgaggggtta atgagaataa tcctacacgt ctgtctctat cgtcgtcttt 201 GAGGGTTTTG TTTGAACAAA GAGACTAGAG AGTGTTGGAG CCGTTAAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 +strand -68 : -59 TGGTCAATTa AC RSP00858 Mean Expected Number 0.005 -strand -139 : -146 GGTAATTA Totally 2 motifs of 2 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19360 |PROD: the same as GENE |complement(6690447..6692461) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +259 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.32 C - 0.18 1 atcatgtctc atgtgatcgt gctagcaagt gggtaaataa ttgagtttaa 51 tttttctcct taatctcgat ttataatgtg ttatgttgac cgtcagatga 101 gtcagcgaaa tagtcatgtc atctaacggt taagacttca tcttcaacta 151 aagaatttca gaaaggaatc tacatcgtgt gaagtagagg aacattactt 201 TCGAGCTTTG ATTCATCGTC GTCGTCTTCG GAGACGAAGC CAAACACACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.006 -strand -13 : -22 TCTACtTCAC AC RSP00460 Mean Expected Number 0.005 +strand -88 : -79 GtCATGTCAT AC RSP00862 Mean Expected Number 0.001 +strand -41 : -33 AGAAAGGAA AC RSP00913 Mean Expected Number 0.002 -strand -78 : -87 GATGACATGA AC RSP00916 Mean Expected Number 0.002 -strand -78 : -87 GATGACATGA Totally 5 motifs of 5 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: very-long-chain fatty acid condensing enzyme |LOCUS: AT1G19440 |PROD: the same as GENE |6728975..6730922 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.11 T - 0.34 C - 0.34 1 aaaaaacgtg gacccctacc gcctcctcct ccactactac taccaccacc 51 acctttggtt tccgtttctc tgtatattca ttcctcgaaa ccctccaaaa 101 acccattTCA ATcaatttct cgcttttgcc ctctacgttt ctcgtcctgg 151 gtttctcaaa tccagctcag tttattcccc aattcaataa tcaaaactct 201 GTCTTTTGGT GGGTCTTCGT CAAAGCTCTC TCCTTTACGG TCCTTTTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01202 Mean Expected Number 0.003 -strand -143 : -150 CCAAAGGT AC RSP01723 Mean Expected Number 0.000 -strand -188 : -199 GTCCACGTtTTT AC RSP01734 Mean Expected Number 0.002 -strand -189 : -195 TCCACGT Totally 3 motifs of 3 different REs have been found Description of REs found 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1531. Group TF: STF1/HY5 /AC: RSP01723//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: C/G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: HhH-GPD base excision DNA repair family protein |LOCUS: AT1G19480 |PROD: the same as GENE |6744344..6746399 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +167 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.23 T - 0.28 C - 0.20 1 aaaaacccat aggtttttgg taggggtttt ttttgggttc aagtcgggct 51 gggctttttt acccaccaca actgcctata acctataagc tatcactttt 101 aagaaatact aagtagccga gtttgggctt taaaaaggaa gtaaaagccc 151 atataaaggt catcggagcg tgagagccac tctcgtacag agcgcgttag 201 AGAAGATATA AAGCGACGGA GCAGATTCTT TTTCTTCCCT CTCTCCTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00488 Mean Expected Number 0.005 +strand -92 : -83 CTAaGTAGCC AC RSP01210 Mean Expected Number 0.008 -strand -64 : -73 CTTTTTAAAG AC RSP01215 Mean Expected Number 0.001 -strand -42 : -52 CCTTTATATGG Totally 3 motifs of 3 different REs have been found Description of REs found 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19520 |PROD: the same as GENE |6759956..6761224 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.34 C - 0.16 1 atgatgtgta atttgtttga aattggaggg aaatgatggg actctgagca 51 cagggtcaaa agagaaactt tagaatgcat aagaatgatt taagtattat 101 ttctaaactt gagggttctt tttgaaaatt acaaataaac ggcaagccaa 151 ccctaattcg agtcccattt ctgtgatctt gacctcttcc tttctcactc 201 AATTTCTGAG CTAAAGTTAG GGTTTTGCCG AGATTTATCG TCCTTCTGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 +strand +17 : +25 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand +25 : +17 AAACCCTAA AC RSP00862 Mean Expected Number 0.002 -strand -6 : -14 AGAAAGGAA AC RSP01030 Mean Expected Number 0.007 +strand -138 : -131 AGAAACTT AC RSP01303 Mean Expected Number 0.006 -strand +26 : +17 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G19580 |PROD: the same as GENE |6774754..6777438 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +174 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.35 C - 0.16 1 tgcaagtgac gacgatacga aacgacattg ttactgatag ggccatttga 51 tttttggtcg gcaggttttg gaccgttcaa tttagtgaaa atatagtaat 101 aaattcgtac cgaataatat aatcggttta atgaaactac tacctgaaat 151 atcgaattag atttggttca tatttcgtat tgttttggtt cgattaaacc 201 ATATTAAACC ACTGTAACTG TAATTTATTG TTTCGCCGTC CCGGAATGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.002 -strand -125 : -132 ACGGTCCA AC RSP00284 Mean Expected Number 0.010 +strand +36 : +41 CCGTCC AC RSP00379 Mean Expected Number 0.001 +strand -167 : -158 CTGATAGGGC AC RSP00431 Mean Expected Number 0.010 -strand +25 : +14 AATtACAGTTAC Totally 4 motifs of 4 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G19690 |PROD: the same as GENE |complement(6807706..6809560) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +7 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.33 C - 0.17 1 tggtataaag gatacttgca agtgtgaaaa aatctgaact tgagactttt 51 gtggtaaatg tttcacgatt ctttatagta tatatcactg gactgtaaaa 101 acgaaatgca gtccttgatt ttgaaaacaa aacggcacgt agtttctttg 151 tactgtgaat cagttaaagt acaacagacc ttggagtctc tcagtcctcc 201 GATTTCAATG GCGGTTTTTC AGTTACCAAG TTTGTCACCG GAGATTCCTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATTRX4 |LOCUS: AT1G19730 |PROD: thioredoxin H-type 4 (TRX-H-4) (GREN) |complement(6822913..6824062) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.23 T - 0.32 C - 0.12 1 tttcataatt cctgtggcta gaaatttgtt tagaatagaa ataaaaatat 51 atacgagcca tttggttcgt gtgtaagtgt gtagtacatg catttgagac 101 accggtccac ttggatatca tttcgtagta accatgaatt tgcaggggta 151 attgtgtcaa tatctcttgg tcatatatag gttacaaaga tgaacggaag 201 AAAGAAAAAA AGGTGATCGG AGATTTTGGC TTATTCTCAG ATTTGGGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.001 +strand +29 : +38 GCTTATTCTC AC RSP00115 Mean Expected Number 0.008 +strand -166 : -156 ATAGAAATaAA AC RSP00125 Mean Expected Number 0.004 -strand -150 : -161 tATATTTTTATT AC RSP00331 Mean Expected Number 0.006 +strand -73 : -65 GTAACCATG AC RSP00522 Mean Expected Number 0.004 +strand -94 : -88 CCACTTG AC RSP00683 Mean Expected Number 0.001 -strand -86 : -95 tCCAAGTGGA AC RSP00860 Mean Expected Number 0.005 +strand -2 : +7 AGAAAGAAA AC RSP00891 Mean Expected Number 0.009 +strand -157 : -149 AAAATATAT Totally 8 motifs of 8 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger (CCCH-type) family protein |LOCUS: AT1G19860 |PROD: the same as GENE |complement(6891420..6894708) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +317 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.24 T - 0.24 C - 0.14 1 atgagtcaac gaaactggct gctattgact ttgttttcca atcagaaatc 51 aaaactttct ttaggggtcg ttatagaaat agactaaagt aatggattat 101 ctgggaaaat atagaaacat gaagggggta cggctgtgaa gacacgtgta 151 tataggagaa ggaaagaaaa aatctgagga cagataaaat gacgatggtg 201 ACCATAAGAA GAAGAACCCA GAGGATCTAG GGCTTCACAA TCGATTCCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.009 +strand -163 : -157 CCAATCA AC RSP00340 Mean Expected Number 0.007 -strand -51 : -60 TaCACGTGTC AC RSP00524 Mean Expected Number 0.010 +strand -59 : -53 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -52 : -58 ACACGTG AC RSP00550 Mean Expected Number 0.003 +strand -108 : -98 TGGATTATcTG AC RSP01035 Mean Expected Number 0.010 -strand -54 : -60 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -59 : -52 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -52 : -59 ACACGTGT AC RSP01722 Mean Expected Number 0.000 -strand -50 : -61 ATaCACGTGTCT Totally 9 motifs of 7 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calmodulin-binding family protein |LOCUS: AT1G19870 |PROD: the same as GENE |complement(6895017..6898600) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.17 T - 0.37 C - 0.23 1 tgagtcatca cgagagagat ctgacagtga cagcgttatt tcgcttttaa 51 tttggacaga agagaaagga gactggcgga ttccaaatct cagacttaac 101 cgtattttaa tgccttccct ttgagttccg ctttcccctt ttgctccatt 151 ttccaacgac actagttagt actactggtc tctctctttg tgtttatttt 201 ACTGATCCAA TAAGAAGATA AAACGGTCTT CTTCTTCTTC TTCTTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.003 -strand -93 : -104 AAAAtACGGTTA AC RSP00864 Mean Expected Number 0.004 -strand -14 : -22 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: APS2 |LOCUS: AT1G19920 |PROD: |complement(6914604..6916745) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.25 C - 0.24 1 ttgtacaaat atcgattgat gggccgaatc aaatgattaa accttaatgg 51 tccctaaggg cccatcttga gaaaaacaaa gggtgaaaaa gacatttcac 101 agaaaagGCA ATaataatca catccacaaa caaaaaagtt cctgcaacta 151 aaaaagcaaa ggagccaaaa gtggaataac gtgtggatct tcttcttcct 201 CCTCCAACAT GTTCCTCCTA ATCTCACCTT CACTGTTCAC TCTCTACTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -26 : -36 TcCACTTTTGG AC RSP00441 Mean Expected Number 0.010 +strand -126 : -117 AACAAAGgGT AC RSP00874 Mean Expected Number 0.008 +strand -37 : -27 GCCaAAAGTGG AC RSP01003 Mean Expected Number 0.008 -strand -150 : -159 ACcATTAAGG AC RSP01621 Mean Expected Number 0.010 -strand -26 : -35 TcCACTTTTG Totally 5 motifs of 5 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: abscisic acid-responsive HVA22 family protein |LOCUS: AT1G19950 |PROD: the same as GENE |6924175..6926715 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +859 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.34 C - 0.23 1 aaatcgtagt ctacgctagt tcataacaca caggattatt taaccccttg 51 aaagaaagta aatatttgaa aaggactcgt aacgaaacca aaaagccaaa 101 acagtgactt gtgaaacaac cgctggtttt ctccaagtaa aagccacatc 151 aaaatttcaa ttttatatta gtattttact ttttgcttag cttttttttt 201 ATTTCACTCA TTTACGTTTG TCTCTTTCCC CGCTCTCTCG CTCTCGCCGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.007 -strand -17 : -28 AAAAAGTAAAAt AC RSP00254 Mean Expected Number 0.005 -strand -127 : -133 CCTTTTC AC RSP01071 Mean Expected Number 0.006 -strand +20 : +11 CAAACGTAaA Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: family II extracellular lipase, putative |LOCUS: AT1G20120 |PROD: the same as GENE |6975379..6977235 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.35 C - 0.15 1 aaatcatctc gtattttttt tcttttgaga gaatagtgta gaaactgtgg 51 tcttatagtt ttagagggta atacgaaaat gagagtgcga ttagtaatgg 101 ataactgaat ttaagaaaag ttcaaagtgt gtgaatgaga aggagtcgta 151 agagacaagc atcttcttct tataaccatc taaaccacat gcttatgtcc 201 ACTTTTTTTC TTTCTTTCTG AGTGAAAAAC ACTTTAGTCT CCCACTCTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.002 +strand +39 : +45 CTCCCAC AC RSP00444 Mean Expected Number 0.000 -strand +20 : +7 cAGAAAGAAAGAAA AC RSP00857 Mean Expected Number 0.003 +strand -25 : -16 CCATCTaAAC AC RSP00860 Mean Expected Number 0.004 -strand +19 : +11 AGAAAGAAA AC RSP00860 Mean Expected Number 0.004 -strand +15 : +7 AGAAAGAAA AC RSP01078 Mean Expected Number 0.000 +strand -29 : -18 ATAACCATCtAA AC RSP01641 Mean Expected Number 0.004 -strand -41 : -50 gCTTGTCTCT Totally 7 motifs of 6 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATEXPA11 |LOCUS: AT1G20190 |PROD: expansin, putative (EXP11) |complement(6998480..6999742) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.33 C - 0.23 1 cagatctact gtcttttttt ggacttatac tgttactaac aaaaatacac 51 atgtaagaga tttgcccaaa taaataaatt aaagatacac acaggctaga 101 taaagataag accacatgta aggtttttgt tgctatacta cattagttta 151 cactcgcttc ccacctttat ttaaacaact ctcacctcct tcactcgatc 201 ATCATCATCA TCATCTCTTT CTTCTTCCAA AAGTCATAAT CATGTCAAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.001 +strand -98 : -90 AAGATAAGA AC RSP00861 Mean Expected Number 0.004 -strand +22 : +14 AGAAAGAGA AC RSP01032 Mean Expected Number 0.004 -strand -179 : -188 CCAAAAAAAG AC RSP01209 Mean Expected Number 0.004 +strand -188 : -179 CTTTTTTTGG AC RSP01469 Mean Expected Number 0.007 -strand -145 : -154 TtACATGTGT AC RSP01711 Mean Expected Number 0.004 +strand -105 : -96 CTAGATAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB2719 |LOCUS: AT1G20200 |PROD: 26S proteasome regulatory subunit S3 |complement(7001192..7004409) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +264 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.23 C - 0.20 1 ggtccaaaca aaactagtaa ccaaaaagtt aatcgccgtt gccggggatc 51 gaacccgggt cacccgcgtg acaggcggga atacttacca ctatactaca 101 acgacatttg ttgcTCAATc gtaatgtaga agatataaat actaatatgg 151 aaaaaagctg tcttgaacaa aaagaaatat actttttttg ttgtgtccaa 201 AAAAAGGAAA ATACTTAGGA AAGAAAAGAG TCTCAGCAGC ATCAGCTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01075 Mean Expected Number 0.001 +strand -138 : -129 CCCGCGTGaC AC RSP01209 Mean Expected Number 0.002 -strand +6 : -4 CTTTTTTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SMT2 |LOCUS: AT1G20330 |PROD: S-adenosyl-methionine-sterol-C-methyltransferase |complement(7038680..7040149) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.39 C - 0.11 1 aaataaataa tcaaatggaa gaatcattgt aattaatttt attcaatttg 51 caaaaccttt aaagagaaac aaaaacttaa aatgtttttt taatattcct 101 tatttggctt gtaatttcca tttactttgt ctaggcattt attattatta 151 aaagtcagtt tttgaactgg gattttaatt agtcaaatat agattctctc 201 AGATTAAAAA CTCTTTAAAA ACTTTTTGTC ATAAATCAGG CAAAGAAGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.000 -strand -94 : -103 CCAAATAAGG AC RSP00543 Mean Expected Number 0.008 +strand -68 : -62 AGGCATT AC RSP01033 Mean Expected Number 0.002 +strand -103 : -94 CCTTATTTGG AC RSP01709 Mean Expected Number 0.008 +strand -103 : -94 CCTTATTTGG AC RSP01709 Mean Expected Number 0.008 -strand -94 : -103 CCAAATAAGG Totally 5 motifs of 4 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1517. Group TF: RIN /AC: RSP01709//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [SRF] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dolichyl-phosphate beta-D-mannosyltransferase |LOCUS: AT1G20575 |PROD: the same as GENE |complement(7126785..7128735) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.33 C - 0.19 1 ctcctttaac tctgcaacct agaaagaaaa aaatggcgga aggaaagaag 51 agcgactcag atgcgattga cgagtttacc tcttttaaag ctttcctgat 101 ttatttttgg gctttatata ggcccatatt tatattaggc CCAATttgag 151 aaacttgctt tttagtccct atatttgaca ttattttaat ccttattttt 201 GTACAGACGA CGGCTGATTT CACGGGTTAA GACGAAGGAA CCACCGTTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.001 +strand -180 : -172 AGAAAGAAA AC RSP01030 Mean Expected Number 0.007 +strand -52 : -45 AGAAACTT Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: small nuclear ribonucleoprotein, putative / snRNP |LOCUS: AT1G20580 |PROD: the same as GENE |7128878..7130631 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.31 C - 0.19 1 gagttttggt aacggtggtt ccttcgtctt aacccgtgaa atcagccgtc 51 gtctgtacaa aaataaggat taaaataatg tcaaatatag ggactaaaaa 101 gcaagtttct caaATTGGgc ctaatataaa tatgggccta tataaagccc 151 aaaaataaat caggaaagct ttaaaagagg taaactcgtc aatcgcatct 201 GAGTCGCTCT TCTTTCCTTC CGCCATTTTT TTCTTTCTAG GTTGCAGAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.002 -strand +38 : +30 AGAAAGAAA AC RSP01030 Mean Expected Number 0.008 -strand -91 : -98 AGAAACTT AC RSP01057 Mean Expected Number 0.001 -strand -185 : -195 aCCGTTACCAA Totally 3 motifs of 3 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 977. Group TF: GT-3a /AC: RSP01057//OS: Arabidopsis thaliana /GENE: rbcS-1a/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CAT3 |LOCUS: AT1G20620 |PROD: catalase 3 (SEN2) |7143057..7146530 |SUPPORT | 7 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.27 C - 0.22 1 ttgggttgga gccaaaacct agcaaaaaaa tatctaagtg ggggcactac 51 attattgttt taacaccaag gaaaagtaaa caacaatggc ccatttttac 101 tgtatcgaga aATTGAtctc gaaaggacaa atgtaccctt ccacttcggg 151 aatccattat tgtgcataac acacgctgtt tcactatata tactttcaca 201 TAGGATCTCA ACACTCTCAC TAAACCAAAA TCCTCAAAAG CCTATTTGGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00472 Mean Expected Number 0.000 +strand -166 : -155 tAAGTGGGGGCA AC RSP01214 Mean Expected Number 0.001 +strand +41 : +50 CCTATTTGGG AC RSP01237 Mean Expected Number 0.008 +strand -19 : -10 CaCTATATAT Totally 3 motifs of 3 different REs have been found Description of REs found 450. Group TF: Alfin1 /AC: RSP00472//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS2 /TF: Alfin1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: HMGB2 |LOCUS: AT1G20693 |PROD: |7176765..7178810 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +507 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.26 C - 0.20 1 aattatttag gaccaaaaat aagggcaatg agtcatatcg cttgccgctg 51 aattctcacg ctgagaagaa gcacaagaga aaacacataa ccaaaggcct 101 agaatcaaaa cttgagatga caacggCCAA Tgatgtgaaa ccacaaggat 151 tgatgacctg gcaaaatata tttgaaatcc cgcctaaacc cctcagtttt 201 TACATTTCGT GCGAAATTTC AATTTTTTTG CAATATCCTT TATTGATTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.009 -strand -23 : -30 ATTTCAAA AC RSP00664 Mean Expected Number 0.001 +strand -173 : -165 ATGAGTCAT AC RSP00891 Mean Expected Number 0.009 +strand -38 : -30 AAAATATAT AC RSP00913 Mean Expected Number 0.002 +strand -49 : -40 GATGACCTGG AC RSP01065 Mean Expected Number 0.001 +strand -55 : -45 AGGATtGATGA AC RSP01206 Mean Expected Number 0.000 +strand -74 : -63 CCAATGATGTGA AC RSP01278 Mean Expected Number 0.003 +strand -173 : -165 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 -strand -165 : -173 ATGACTCAT Totally 8 motifs of 7 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1116. Group TF: LFY /AC: RSP01206//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EL1 /TF: LFY ||Identical REs AC: RSP01211 RSP01216 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: HMGB3 |LOCUS: AT1G20696 |PROD: |7179442..7181489 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +373 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.23 C - 0.20 1 aaaaaataag tacaaattta cgaaacacac aagaaaacac ataagcgaga 51 gagagagatc aaaggataaa aaggcgcgag aatgtgaaaa gccagtgaag 101 agaaaccact cggatcgatg acgtggccaa attatatttg aaatcccgcc 151 taaaccccta aagaattttg acaactcgtg ggaaattgaa atatcttttt 201 AATTTCTTCT CATAAGATAT TTTAACATCC CCCACTTAAC CCTCTCATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -82 : -74 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 +strand -82 : -75 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -75 : -82 CCACGTCA AC RSP00232 Mean Expected Number 0.004 -strand -77 : -86 ACGTCATcGA AC RSP00248 Mean Expected Number 0.001 -strand -74 : -83 GCCACGTCAt AC RSP00385 Mean Expected Number 0.007 -strand -57 : -64 ATTTCAAA AC RSP00819 Mean Expected Number 0.002 -strand -74 : -83 GCCACGTCaT AC RSP00821 Mean Expected Number 0.001 -strand -74 : -83 GCCACGTCaT AC RSP00842 Mean Expected Number 0.001 +strand -92 : -85 CTCGGATC AC RSP00847 Mean Expected Number 0.002 -strand -75 : -84 CCACgTCATC AC RSP00864 Mean Expected Number 0.002 +strand -153 : -145 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -151 : -143 AGAGAGAGA AC RSP00913 Mean Expected Number 0.002 +strand -84 : -75 GATGACGTGG AC RSP00915 Mean Expected Number 0.001 +strand -84 : -75 GATGACGTGG AC RSP00916 Mean Expected Number 0.002 +strand -84 : -75 GATGACGTGG AC RSP00997 Mean Expected Number 0.001 +strand -84 : -75 GATGACGTGG AC RSP01034 Mean Expected Number 0.004 +strand -80 : -74 ACGTGGC AC RSP01065 Mean Expected Number 0.001 +strand -90 : -80 cGGATCGATGA AC RSP01275 Mean Expected Number 0.003 -strand -74 : -83 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 +strand -84 : -74 GaTGACGTGGC Totally 20 motifs of 19 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CDKB2;2 |LOCUS: AT1G20930 |PROD: cell division control protein, putative |complement(7292561..7294735) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.28 C - 0.20 1 gttgacaaac attggttatt cactttttcc acgtcacact taaaaacaga 51 acataaaaaa aaaactaatg acgacgctcc agttttgaat tttgaaaaaa 101 gaaaaaaaga accgttgaaa aaacatgagt gctcaaagag ggaatatacc 151 tttttaataa tctccttcct atttaaacca attctcgaat ctaattacat 201 TTCCTCTCTC TTTCCCCAAA TTGAAAACAA AATCTGAGAT TCGCGAAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 +strand -173 : -164 TCCACGTCaC AC RSP00214 Mean Expected Number 0.002 -strand -165 : -172 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -172 : -165 CCACGTCA AC RSP00233 Mean Expected Number 0.005 +strand -173 : -164 TCcACGTCAC AC RSP00863 Mean Expected Number 0.001 -strand +9 : +1 AGAGAGGAA AC RSP01275 Mean Expected Number 0.003 +strand -173 : -164 TCCACGTCAc AC RSP01734 Mean Expected Number 0.007 +strand -173 : -167 TCCACGT Totally 7 motifs of 7 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc-binding family protein |LOCUS: AT1G21000 |PROD: the same as GENE |7337740..7339441 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.08 T - 0.30 C - 0.20 1 tcccaaatta cataaagaag aaaacaaatt gattttccca aataaaggag 51 tcagaaaaat ataatttagg aacaaacaaa aaagatacct ttaataataa 101 acaaaaataa ctctaaaaat attttaaaat gaaattcgta tgaaatataa 151 accgcataaa cttatcgtga ccgccttcaa ataaaaataa aaccctttat 201 TTTCTCTCTT TCAGCCGCCG CTTTCACTTA CCTCTTCCTC TTCCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 +strand +13 : +19 AGCCGCC AC RSP00241 Mean Expected Number 0.008 -strand -28 : -33 CGGTCA AC RSP00438 Mean Expected Number 0.003 -strand +19 : +14 GGCGGC AC RSP00807 Mean Expected Number 0.003 +strand +14 : +19 GCCGCC AC RSP01215 Mean Expected Number 0.001 -strand -153 : -163 CCTTTATTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transporter-related |LOCUS: AT1G21070 |PROD: the same as GENE |complement(7375858..7378136) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +337 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.27 C - 0.13 1 ttaagtttaa aaaattaaat gcatgacgtt atggaatgaa atgacgaagt 51 tacccttaaa tgcaacgtat tgtggtaatc agtcatgtgc ctatcaaaaa 101 cggaaacata aggtcaaata tggtaaacga caagcgtcaa agtatttact 151 atattaacaa atatttgaga gaagaatttt tgattataaa ttaataatca 201 AAGGCATCAA GGAAAGCATC AATGGCGGAA GAAGCTTACT TGTAATAGCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 -strand -63 : -72 GACGCtTGTC Totally 1 motifs of 1 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G21090 |PROD: the same as GENE |7384618..7386547 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +225 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.31 C - 0.23 1 tcaaaatgtc atgtaaaatg caaacttgta cctagtaatc tggtactcat 51 aattcaaaga aaatgaaatt ccaatcttga tttcaagtat aggtatggaa 101 caaattaata aaataaaaca gtcctcaaaa ttcTCAATct tctccatttc 151 ttcaacacat aaaaagtaaa aaagacagag acactcactg cacactcact 201 GCACACTTCT CAAAATACTT CTTTCTCTGT CTCTGTCTCT CACCCCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 +strand -40 : -29 AAAAAGTAAAAA AC RSP00455 Mean Expected Number 0.007 -strand -103 : -108 CCATAC AC RSP01013 Mean Expected Number 0.007 -strand -51 : -60 gAAATGGAGA AC RSP01134 Mean Expected Number 0.001 -strand -100 : -109 GTTCCAtACC AC RSP01640 Mean Expected Number 0.004 +strand +25 : +34 CTcTGTCTCT AC RSP01640 Mean Expected Number 0.004 +strand +31 : +40 CTcTGTCTCT Totally 6 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 433. Group RE: Motif I /AC: RSP00455//OS: Pisum sativum /GENE: PSPAL2/RE: Motif I /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G21410 |PROD: the same as GENE |7497130..7499567 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +338 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.39 C - 0.18 1 gcttggaatc tattcaatta ttcaaaaaaa taaataaaaa atactgcatt 51 ttaacgtatc agccagtcaa tatattacac gtgtcataaa gcattaccca 101 cacgtttctc ctgcctcttt ccctttcatt tttttttttc attttttttg 151 tttcttctct tgttgttgtt atcttcttct agctagctct gtgaaacact 201 TCAAATGAAC AAATATATCA AATAATAATA GTGTAATTAA GTCGGAGGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.003 +strand -125 : -116 TaCACGTGTC AC RSP00503 Mean Expected Number 0.002 +strand -22 : -15 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -15 : -22 CTAGCTAG AC RSP00524 Mean Expected Number 0.004 +strand -124 : -118 ACACGTG AC RSP00524 Mean Expected Number 0.005 -strand -117 : -123 ACACGTG AC RSP01014 Mean Expected Number 0.004 +strand +2 : +11 CAAATGAAcA AC RSP01035 Mean Expected Number 0.005 +strand -122 : -116 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -124 : -117 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -117 : -124 ACACGTGT Totally 9 motifs of 6 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SCL1 |LOCUS: AT1G21450 |PROD: scarecrow-like transcription factor 1 (SCL1) |7508960..7511790 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +750 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.36 C - 0.19 1 ttcttcagaa aacaatcaaa attctcttca tatcattttt ttttgttcgt 51 tcttcttcag aaaacaatct tcattttttt tgtttttgaa ttttttttgg 101 ttcaagtaaa acctaacacc acacgagtct ttaaaagtat gaatctttaa 151 agagtaaaca catctttaaa caaagaccac aagacacaga ataaaaccag 201 AAAAATCAGA ACCCAAAGCC AAAGCGTTTT TATCATTTCT GTCTTCTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00508 Mean Expected Number 0.002 +strand +24 : +35 GCgTTTTTATCA AC RSP00574 Mean Expected Number 0.009 +strand -14 : -7 CAGAATAA Totally 2 motifs of 2 different REs have been found Description of REs found 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB1968 |LOCUS: AT1G21690 |PROD: replication factor C 37 kDa, putative |7615633..7618594 |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.27 T - 0.24 C - 0.16 1 ttattactat gttttgcgta cgtgtcagaa gattactatc catgtaatgt 51 ctgaagaatt aggtgcgagt caaaagtcat aacagtcgat aagatatcaa 101 accctcttcg tgacttggaa ggtttgaggc gggggcggga aaatccagaa 151 aacgtcggat aatgtttata aaggagtctc tccgtcaccg gagaaaaatt 201 AGAAGAAAAA AGAGGCGAAG AAGAGAGAGG AATGGCGCCA GTTCTTCAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.007 -strand -59 : -66 TTTCCCGC AC RSP00049 Mean Expected Number 0.002 +strand -184 : -175 CGtACGTGTC AC RSP00070 Mean Expected Number 0.002 +strand -182 : -175 TACGTGTC AC RSP00233 Mean Expected Number 0.002 +strand -22 : -13 TCTcCGTCAC AC RSP00282 Mean Expected Number 0.009 +strand -164 : -158 TATCCAT AC RSP00404 Mean Expected Number 0.009 +strand -188 : -182 TTTGCGT AC RSP00863 Mean Expected Number 0.005 +strand +24 : +32 AGAGAGGAA AC RSP00940 Mean Expected Number 0.007 -strand -6 : -15 TTCTcCGGTG AC RSP01035 Mean Expected Number 0.008 +strand -181 : -175 ACGTGTC AC RSP01053 Mean Expected Number 0.004 +strand -113 : -105 GATAAGATA AC RSP01703 Mean Expected Number 0.002 -strand -43 : -52 CCGACGTTTT Totally 11 motifs of 11 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 273. Group RE: Amylase-element /AC: RSP00282//OS: Oryza sativa /GENE: Amy3D/RE: Amylase-element /TF: unknown ||Identical REs AC: RSP00675 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PBC1 |LOCUS: AT1G21720 |PROD: 20S proteasome beta subunit C1 (PBC1) (PRCT) |7626272..7628251 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.34 C - 0.24 1 taaattctaa ttgtttgttc cctttgcaat tctcttgatt tgaaatgaga 51 attttttcct tttatctatt tcttttgtca aaaaacaaaa ctaaatttcg 101 tcgaaattaa atttctataa gaagcCCAAT aaagcgaggc ctaaattagg 151 cccaaaatac tattggaggc gaaaaagaaa gtccggctgg attttcctcc 201 AAGCCACCGT CGACTTTACT TAGTACTCCC TCTCTCTCCC CTCCTCCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.009 +strand -194 : -184 CTAATTGTTTg AC RSP00621 Mean Expected Number 0.001 +strand +38 : +46 CCCCTCCTC AC RSP00865 Mean Expected Number 0.002 -strand +39 : +31 GGAGAGAGA AC RSP01599 Mean Expected Number 0.009 -strand -156 : -163 TTTCAAAT Totally 4 motifs of 4 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G21760 |PROD: the same as GENE |7649215..7652226 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.33 C - 0.16 1 ttttggtcct aatactttca gttttttcac taaacaatct aatggaagaa 51 cgagaaacag ttaaactaaa ccaattggtt aaagatattg aaaccgacct 101 tgaactgatt taactcagaa atgtcggttt cgttgtttgt ctgaattttg 151 tgaacctcga gaaaacaata aaataatatt aaaaaaaaga cagagaaaga 201 GTCTCTGTTT CTATCTTCTT CTTTTTTTTT CCCGGTAACA GGGAGCTCGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.010 +strand -168 : -161 AACAATCT AC RSP01678 Mean Expected Number 0.007 +strand -35 : -24 CAATAAAATAaT Totally 2 motifs of 2 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: galactosyltransferase family protein |LOCUS: AT1G22015 |PROD: the same as GENE |complement(7750991..7753508) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.39 C - 0.12 1 aataatataa ttcaataaat aaaccatatc aggttattta atttgttttg 51 ttagtcaaga ctcaaagagt tcatttcttt gaacatgtat ttaaattcat 101 aagtggaagt aaaTCAATtg acatattaga tactttgaat taaacagtca 151 aacttgcatt aaatattaat ttatatagag agtgttacta gtttctctgc 201 ATGTAGTAAC AACTTTGCCT TTCCGTTTGT TAAAATTATA CGTCTTAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01401 Mean Expected Number 0.001 +strand -23 : -13 GAgAGTGTTAC AC RSP01757 Mean Expected Number 0.001 +strand -147 : -140 GTCAAGAC Totally 2 motifs of 2 different REs have been found Description of REs found 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: senescence-associated protein-related |LOCUS: AT1G22160 |PROD: the same as GENE |7823138..7823960 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.29 C - 0.20 1 gaaaaagaag aagacaaaat aatttgtgaa agaagaagaa aaaaaaagca 51 ataataacga ataaaataaa cacttaaaga atcggaatca tgacgtgtcg 101 taattaaaac gggaatagaa tcgatcagac aaactcaacg gctcagatta 151 actcctcagt ttatggctct tcttttatct tctctgtctc ctcttttctc 201 ACTTCCCTCT TTCTCTCTTT CACTTTGCTC TGTTCACTCA GAGCATCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.005 -strand -102 : -111 GACAcGTCAT AC RSP01035 Mean Expected Number 0.006 +strand -108 : -102 ACGTGTC AC RSP01258 Mean Expected Number 0.001 +strand -110 : -103 TGACGTGT AC RSP01601 Mean Expected Number 0.008 +strand +18 : +25 TTTCACTT Totally 4 motifs of 4 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G22170 |PROD: the same as GENE |7826278..7828307 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +314 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.33 C - 0.16 1 tgttggttgt cctcactgtc tcaattgtca ctacctaagg aagccgatct 51 tttgttgttt tacgtcttaa gtttgcgatt tttttggact tacgaaaatt 101 aaatgcaaaa aaaacaagaa atagaaagtt gacaaaaaca agaaatataa 151 atcgtctaaa gcttgcttta tgtaaactca taaaatcctc ctttttgggc 201 ATTGACAAGT TCATCTGTCT CTCTTGTCGT AGTGAAAGAG AAAAAGAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.010 +strand -101 : -94 TAAATGCA AC RSP00999 Mean Expected Number 0.005 +strand -173 : -163 TCACTAcCTAA AC RSP01033 Mean Expected Number 0.004 +strand -11 : -2 CCTTTTTGGG AC RSP01214 Mean Expected Number 0.002 +strand -11 : -2 CCTTTTTGGG Totally 4 motifs of 4 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G22200 |PROD: the same as GENE |complement(7837580..7840777) |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.30 C - 0.16 1 acttattttt tctctttaca aataataaat aaattatggg aatataaaaa 51 aaaatattga tatgggcctt attgatactc agagcccaag cccaatttgg 101 ataaacaaaa attaaaataa agcgctaaat atgcaaatga ttaaaacgac 151 aaatacgaat acactatacg acgtcgttcg taagtgtagc gtcggcgttg 201 TCCGTGATTC TTCTCTTTAG CTTATTTTTG GGGAAGACAA TTCCGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.008 -strand -5 : -10 GCCGAC Totally 1 motifs of 1 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G22270 |PROD: the same as GENE |7865482..7866128 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.28 C - 0.21 1 ggtcttttat accggagaag tcgattaatt cgactaacgg caaaattttg 51 aaatatgctt cacgcgctag agaatagcgt gaatcttact tggttactaa 101 aaaatatcgt aggagtcacg tggcACAATa aacggctgag attaaaatca 151 aacgcagtga aacaaaaaca aaaaccctcg gccgcattag cttcttcttc 201 GTCTTCTTTC TTCTTCACTT CTGCCTCTTA GGGTTAAGCA AGAGAGAAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -86 : -77 GtCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -77 : -86 GCCACGTGaC AC RSP00175 Mean Expected Number 0.001 +strand -84 : -77 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -86 : -77 GtCACGTGGC AC RSP00385 Mean Expected Number 0.009 -strand -147 : -154 ATTTCAAA AC RSP00640 Mean Expected Number 0.002 +strand -85 : -78 TCACGTGG AC RSP00698 Mean Expected Number 0.004 -strand -169 : -179 cGAATTAATCG AC RSP01034 Mean Expected Number 0.007 +strand -83 : -77 ACGTGGC AC RSP01303 Mean Expected Number 0.002 -strand +37 : +28 TtAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand +37 : +28 TtAACCCTAA Totally 10 motifs of 9 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein phosphatase 2C, putative / PP2C, putative |LOCUS: AT1G22280 |PROD: the same as GENE |7873982..7875867 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +243 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.32 C - 0.11 1 atagtcacaa tttaaaattc attcatatga ggcgtaaagt aaatatttat 51 atatatgaag gacgttgatg caatattaaa aaaatacaga tagctttcaa 101 tttttatttt tctttcaact gaataaaaat atatatatat atatatataa 151 tttcgcgtag gaaaaagaca taaacgaaaa gagagcgaag acttcgtcgc 201 ATAGACTTTG TAGATTTATC GTTGAGAGTA CCTCAAACAA AAAAAAATTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.010 -strand -186 : -196 TtAAATTGTGA Totally 1 motifs of 1 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT1G22490 |PROD: the same as GENE |complement(7938240..7940581) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.12 T - 0.41 C - 0.24 1 tatatttatt tttgttgaag attcactctc ctattcttcc tccatgccgg 51 tgagttcttg agaatttaat attttgtaaa tcaatttaca aaaaatcttc 101 atataactaa taccatgctt agtttccttt agtgggctta acccttttgc 151 ctttatttcc ccctcgagac aaaaaggaga gcgacaaaca cttcctgtct 201 AAATTTTGTT TTCTCTCCTT CTCTCTCCCT CTCTCGGTTT CTCAATCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.000 -strand -25 : -35 CtTTTTGTCTC AC RSP00332 Mean Expected Number 0.008 -strand -85 : -92 ATGGTATT AC RSP00615 Mean Expected Number 0.004 -strand -147 : -152 CTCACC AC RSP00629 Mean Expected Number 0.008 +strand -110 : -103 AAAAATCT AC RSP00865 Mean Expected Number 0.005 -strand +28 : +20 GGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +35 : +19 GAGAGAGgGAGAGAGAA Totally 6 motifs of 6 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G22510 |PROD: the same as GENE |complement(7950808..7952659) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.29 C - 0.21 1 ttaaaaatat acatataatt aaacaaagcc accaacgcgt taacaggcat 51 ggttattcac tcatcttgat gacctcaatt agaagccttt gaacggctca 101 gattgcatat ttgtagccgc gtcttagctt aatctATTGC cacgtgtttc 151 cgataattat tttcttaata cttaactgct acggaaaagt cataattaac 201 ACTCTATAGA GCTTCCGAAG AACGACGCTG CGACGAGAGA GACTAATAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -54 : -62 ACACGTGGC AC RSP00158 Mean Expected Number 0.006 +strand -43 : -33 TATTTtCTTAA AC RSP00175 Mean Expected Number 0.001 -strand -55 : -62 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -53 : -62 aACACGTGGC AC RSP00524 Mean Expected Number 0.009 -strand -54 : -60 ACACGTG AC RSP00709 Mean Expected Number 0.005 +strand -47 : -39 TAATTATTT AC RSP00819 Mean Expected Number 0.002 +strand -62 : -53 GCCACGTgTT AC RSP01034 Mean Expected Number 0.006 -strand -56 : -62 ACGTGGC AC RSP01255 Mean Expected Number 0.002 -strand -54 : -61 ACACGTGG Totally 9 motifs of 9 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: tetratricopeptide repeat (TPR)-containing protein |LOCUS: AT1G22700 |PROD: the same as GENE |complement(8028155..8029956) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.33 C - 0.19 1 cttaattatt tgttaaggtt cttcctatat atatatattc tgaaaaattc 51 ataaatcttc cctaattaaa taaaaaagat ccattagata aaaccaaaat 101 gaaataatat gtagatttaa accggaaggt actaaaccgg aaATTGGaag 151 aggcaacgtg ggccttatct tcttcttctt cttcctgcta gattttattc 201 TTTTATCTCT TGAGCACACA CACACATACA AGACTCTCCT CACAGAACGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.000 -strand -40 : -49 CCACGTtGCC AC RSP00710 Mean Expected Number 0.003 +strand -198 : -186 TAATTATTTgTTA Totally 2 motifs of 2 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AJH1 |LOCUS: AT1G22920 |PROD: |complement(8109703..8112040) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.33 C - 0.16 1 ctataccaat tggttgatac aatgactgga atttatcctt tgatttgcca 51 acattgattt ctataaaagt taaacaaact aaaaataaaa agggaaaaat 101 atttaataaa aaatgtACAA Tattaaattt ccataaaaat tttatatggt 151 taatgttttg gattagcatt agtccccaaa tcccatatta agtaaatcca 201 TTTTGAGTTT TGTTCTCGCA AACCGGTTTA ACCCAAGAAC CCAAAGATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.010 -strand -137 : -147 ATAGAAATCAA Totally 1 motifs of 1 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AP2 domain-containing transcription factor |LOCUS: AT1G22985 |PROD: the same as GENE |complement(8135202..8135909) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.30 C - 0.17 1 accaattaac ttaataatat ttttgtccga aaacagattt ttcgaaatat 51 ttgttggtca tcaattttga attcaaaacc gacttgatga gattgatcaa 101 tagtTCAATa ctcataatta cacacggatt ctaaaagata agagaaacag 151 taagtcggtt aattttggat taagtaacgc acaagccaaa gccttctcct 201 GATCGAATCA TAAACCAAAC AAATCTTTCT TTTAAAAGAA GCGGACACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.005 +strand -66 : -58 AAGATAAGA AC RSP01692 Mean Expected Number 0.004 -strand +7 : -1 TTCGATCA Totally 2 motifs of 2 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G23040 |PROD: the same as GENE |8164948..8165851 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.09 T - 0.36 C - 0.21 1 tgtatacttt tatttaagta taatttcgtt taaaaaaatg actagaagct 51 tacagaaaaa ttgttatata cacaatacac tatttaataa gtctatgact 101 cccatgcact tgacttacgt aacgagaacg cattcatcat cacctctcaa 151 ttcattttca cgtctcctct taattttcaa ctctttaagc tcaccatata 201 TACAAAACTC TGTTTTTGAT TTTCTCTTTG ATCAAAATCA AAAAACGCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.008 +strand -98 : -92 CATGCAC AC RSP00057 Mean Expected Number 0.005 +strand -44 : -35 TtCACGTCTC Totally 2 motifs of 2 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 10 kDa chaperonin, putative |LOCUS: AT1G23100 |PROD: the same as GENE |8195769..8196464 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.28 C - 0.19 1 tttaatgcat gtcaatacca ttgacctaat taatgaaaaa tgttgaatta 51 attaatgcat ataccctact ttttattaac atgaaacgag tcaaataaaa 101 agggattgac TCAATaattt tagaaatact gaatgggcct gggccacgta 151 aagtccaagt aaccttaata acctaaaaac ccggaacacc tgttgtgctt 201 AAACCCTAGA CCCTAAATCT TAGCGAAATT AAGCAGAGCA ACATTTTCGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand -51 : -58 TACGTGGC AC RSP00051 Mean Expected Number 0.004 +strand -58 : -49 GCCACGTAaA AC RSP00200 Mean Expected Number 0.001 -strand -166 : -175 CATTAATTAG AC RSP00247 Mean Expected Number 0.003 +strand -58 : -49 GCCACGTAAa AC RSP01034 Mean Expected Number 0.004 -strand -52 : -58 ACGTGGC AC RSP01303 Mean Expected Number 0.007 +strand +7 : +16 TAgACCCTAA AC RSP01470 Mean Expected Number 0.006 +strand -198 : -189 TaATGCATGT Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G23670 |PROD: the same as GENE |complement(8373275..8375857) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.38 C - 0.25 1 cacgaggtaa tacctttatt ctcctctttc tttaggtagg tcttagctcg 51 acgtcaagaa ctcactaaaa tcatgctgct cacttcttgt ttcgctgtat 101 acgtacacta ctcctccacc attacctcct cagctagtac attatctcaa 151 tctataacaa ctttatatta caatattcct cacatataca agctttggtt 201 ATTCGTTTGC TCTTGTTTTT ATCAGGTAAG CATCATTTGT AGACTACATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00566 Mean Expected Number 0.005 -strand -8 : -17 gCTTGTATAT AC RSP01453 Mean Expected Number 0.002 -strand -160 : -166 ACCTACC Totally 2 motifs of 2 different REs have been found Description of REs found 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: oxidoreductase |LOCUS: AT1G23740 |PROD: the same as GENE |complement(8398115..8399717) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.24 C - 0.15 1 taaaaattgt acattgtaat gttcaaaaac cgaagtgttt tgtgattgtt 51 ctagacttct gtagttctaa aagaaatgaa acaaagatga atcacaaaat 101 cagcaccaga tcaaaaacga ttatgggccA CAATttttgt gatataaaca 151 ttaaaatgac aaccacaaga aaatatcaac caatcaaaga aagccacgaa 201 ACAGAGTATT TTAAAAACAG AGGAAAGCGA AAGAGATAAG CCTTTTAGAC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DNA-binding protein-related |LOCUS: AT1G23750 |PROD: the same as GENE |8400145..8401476 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +482 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.24 C - 0.20 1 ggcctaaact ttaaattggg ctttatgaat aagcccaaca gttgagaaaa 51 cgcagtacta aaagtcgatc atctaggcac gatgagatta accatagaaa 101 ccgcgcacaa cgaagcacga tcagtacacg tgttaaatta tgATTGGgtc 151 cttggtagag attaaagatc caccgtccat ttccccagaa ctagaaaaaa 201 GAGAAGGGAG AAAACTTTCT CCGAGCTCGA TTGTTTTTGG AAATCGTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand -6 : +4 AAAAAAGAGA AC RSP00524 Mean Expected Number 0.009 -strand -68 : -74 ACACGTG AC RSP00817 Mean Expected Number 0.003 +strand -76 : -67 TACACGTGtT AC RSP01256 Mean Expected Number 0.003 +strand -75 : -68 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -68 : -75 ACACGTGT AC RSP01717 Mean Expected Number 0.000 +strand -77 : -66 GTACACGTGTTA Totally 6 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G23850 |PROD: the same as GENE |complement(8425728..8427062) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.36 C - 0.17 1 tttcccaatt aatctcgact tttaatctgt tcttcttcgg ccgccacatg 51 ttttcatttt aatacttttc taaatttggt tttgaggcaa tttggttcag 101 atttgttggt ataCCAATtc ttacgtcaac gtcaatgaag aaacgactcc 151 atatttacga ataaaaaact gtagtagatc tgtactctcc ctttttcttt 201 GTAGAGAAGA AGAGAACTGT GAAAGAAGAT GAAGATTGAG GAGGATCTAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.005 -strand -73 : -80 TGACGTAA AC RSP00438 Mean Expected Number 0.006 -strand -156 : -161 GGCGGC AC RSP00716 Mean Expected Number 0.003 -strand -117 : -125 CAAAACCAA AC RSP00807 Mean Expected Number 0.006 +strand -161 : -156 GCCGCC AC RSP00918 Mean Expected Number 0.004 -strand -71 : -80 GTTGACGTAA Totally 5 motifs of 5 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G23970 |PROD: the same as GENE |complement(8482002..8483857) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.29 C - 0.18 1 cctcaatatt gcactatttt cttagagaca atgtgtgagg caatcttatg 51 aaagaaatta tctatgtatt aaataatttc attcattatg tatgggttct 101 taaattctaa tcataaaATT GAaaaagccc aactgaagcc cataaatgaa 151 tacatcgaat cccacaaaat attaattcac ttcaatataa cgtaatcgcc 201 ATAACAAAAA AACACAAAGT ATTCACCGAC GAGAAGAATA TGACTACGGA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: IAR4 |LOCUS: AT1G24180 |PROD: pyruvate dehydrogenase E1 component alpha subunit |complement(8560519..8563484) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.38 C - 0.17 1 caacaaagga tttggctttt tgttgtctgt gactgaaaaa gaaaacaatc 51 actcacaaaa atgatgttac atatgtaaag tttgtcttta ttcactctct 101 tgttgtaaag ttttgtatgt tgttgtaaca tttatcaaaa atttcatttt 151 gttatggtat gttatataga aatgagtcaa atgaccataa aaggtttgac 201 CTTTTCCATA AACGACGCTT CGCCCTCTCC TAACTCTTTC CCTCACTTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.008 +strand -127 : -120 TGTAAAGT AC RSP00495 Mean Expected Number 0.008 +strand -97 : -90 TGTAAAGT AC RSP01033 Mean Expected Number 0.002 -strand -7 : -16 CCTTTTATGG Totally 3 motifs of 2 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: paired amphipathic helix repeat-containing protein |LOCUS: AT1G24210 |PROD: the same as GENE |complement(8573538..8575145) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +629 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.42 C - 0.18 1 ttaatctcta ttttcgatta gatcatccct atactaaaat tagcatttca 51 cattttttac tttttttact tttctcaatt aaaaagtttt aattaattaa 101 ttaaaaaaaa gaagaagatt tgcctttttc cttttttaaa ccgtactttt 151 gatgtaatcc ttaattatat aatccaacgt taagtgtcgg aaactaaacc 201 CTAGAGAAAT CTCTTCTTCT AGTTCTAGTC TCCTGCTTCT TCGAGATCGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 -strand -136 : -147 AAAAAGTAAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, contains Pfam domain |LOCUS: AT1G24350 |PROD: the same as GENE |complement(8638509..8640476) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +174 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.26 T - 0.27 C - 0.10 1 aaaaagcgat acaaacgaag ttatgtcaag tgtgtaaaag tcatgtttat 51 agttggggca ggtcgtcgaa taagaggaga ctcgatttca cgaatagaac 101 tgacctaggt attcgggttt tgtatcggat acggttcata tttgttcgga 151 tgcgggtaat tgtataatat atagttttgt ggagcagtgt ttaaaaaaaa 201 AATTGGTCAA AGAAAAAAAA AGAAAGACAA AGAGGATTGA ACGGTAGACG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G24440 |PROD: the same as GENE |8662007..8663952 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +321 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.31 C - 0.18 1 caacagaaag catataatgt tttatagata aggacaaaag ctatttctct 51 ctacaaacat tataacaaca acactcatca tcatcatcca atttctcatc 101 attatgatct ttgaaacaga acaccaaaat taaaaaagtt tgcaagaaca 151 aaaaaaaaaa aagagataag attcttctct ctgtattttt gaaaaaaaat 201 ATATATAAAT TTTTTTCTTG GCTTTCACGA AGTCTCTTTC TCTGGCTGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00307 Mean Expected Number 0.007 -strand +22 : +17 GCCAAG AC RSP00445 Mean Expected Number 0.002 +strand -44 : -35 AAAAAAGAGA AC RSP00534 Mean Expected Number 0.002 -strand -96 : -108 ATAATGATGAgAA AC RSP00593 Mean Expected Number 0.004 -strand -27 : -35 GAATCTTAT AC RSP00861 Mean Expected Number 0.001 -strand +41 : +33 AGAAAGAGA AC RSP01031 Mean Expected Number 0.009 -strand -26 : -33 AGAATCTT AC RSP01600 Mean Expected Number 0.009 -strand -85 : -92 TTTCAAAG Totally 7 motifs of 7 different REs have been found Description of REs found 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: acidic ribosomal protein P0-related |LOCUS: AT1G25260 |PROD: the same as GENE |complement(8853946..8855847) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.19 T - 0.21 C - 0.20 1 tgcacaacaa aacaaaaaaa actaaaaaca ctataatcca tttaaattta 51 aactagtaca ccctccaatg acaaaaaaaa atcggcccag atttctgata 101 gctaaaaggc ctgaaacggg ccggatccgg atcgggttga attaggggtc 151 cagattaaaa agtgcgaatt aaagcaaaca agggaacaag ggtttcagtt 201 TCCCTGAAGA AAATTGAAAG GAGCTTAATA AACAGAAGCC GTTCTCCTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01004 Mean Expected Number 0.007 -strand -154 : -163 AtTTAAATGG Totally 1 motifs of 1 different REs have been found Description of REs found 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: mitochondrial substrate carrier family protein |LOCUS: AT1G25380 |PROD: the same as GENE |8903522..8905989 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +191 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.35 C - 0.20 1 agcttggttt gatcgaatta taccggattc agtcagatta taatttgata 51 atcagataga ggcaaaaagt gttcaacttt ctttcttctt gggttgtgtg 101 ttgttgttgt taaatgtgtg acgtcatctc aaaccaactg tgcttcttcg 151 gaatctgtaa gaaaaaaaat cgatcctttc gactagggac cgcctaaatc 201 ATACGCAAAC AAAGTCTCTT CCTTTACCCG TCTACACGTT CGAATTTTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.010 -strand +9 : +3 TTTGCGT AC RSP00441 Mean Expected Number 0.006 +strand +8 : +17 AACAAAGTcT AC RSP00860 Mean Expected Number 0.006 -strand -115 : -123 AGAAAGAAA AC RSP00872 Mean Expected Number 0.010 +strand -86 : -77 TGTGTGACgT AC RSP01499 Mean Expected Number 0.006 +strand +24 : +33 TTaCCCGTCT AC RSP01654 Mean Expected Number 0.007 -strand -73 : -82 GATGACGTCA AC RSP01692 Mean Expected Number 0.004 -strand -184 : -191 TTCGATCA Totally 7 motifs of 7 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G25400 |PROD: the same as GENE |complement(8911117..8912385) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.10 T - 0.41 C - 0.29 1 gttgcaggct gactcattca cctttgtgcc ttatccttct ggctcttgca 51 gtttcgttga agtctccact gccgcctttc tccaacgtgt cttaaagatc 101 tgttctcaca tatcctctaa ttatctacca cgtcatctct ctttcgtatc 151 tttttttttt ctctctttat atactcataa cgaccataaa ccaaaatctc 201 CTCTCTTTTT CTCTCTTTAC TATTTTCTTC CTTACCAAAT ATAGCAACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.002 +strand +32 : +47 TTACCAAATATaGCAA AC RSP00080 Mean Expected Number 0.002 -strand +47 : +32 TTGCtATATTTGGTAA AC RSP00085 Mean Expected Number 0.002 +strand +32 : +47 TTACCAAATATAGcAA AC RSP00085 Mean Expected Number 0.002 -strand +47 : +32 TTgCTATATTTGGTAA AC RSP00188 Mean Expected Number 0.003 +strand -119 : -110 cCAACGTGTC AC RSP00214 Mean Expected Number 0.003 -strand -66 : -73 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -73 : -66 CCACGTCA AC RSP00913 Mean Expected Number 0.009 -strand -64 : -73 GATGACGTGG AC RSP00916 Mean Expected Number 0.009 -strand -64 : -73 GATGACGTGG AC RSP00997 Mean Expected Number 0.005 -strand -64 : -73 GATGACGTGG AC RSP01035 Mean Expected Number 0.006 +strand -116 : -110 ACGTGTC AC RSP01275 Mean Expected Number 0.007 +strand -74 : -65 aCCACGTCAT Totally 12 motifs of 10 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: very-long-chain fatty acid condensing enzyme |LOCUS: AT1G25450 |PROD: the same as GENE |complement(8938466..8940374) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.26 C - 0.18 1 gaattaaaac agcaaaaggt tggtaaaagt ctttttcccc ataatcattt 51 gctccataat tgacgtttgt ctggcaacaa ctggaaacac agatatagaa 101 aaaaagATTG Gacagtaaat cataaaaaaa aaaaagcaaa attaaataga 151 aagacgaagc gagagaaaga gcgttgagtg gcgtgagagt ttgagtccga 201 AAATTAACTC CTCTCCCATC TGCCAACTTT CCTCTGTTTC TCCTTTATAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01174 Mean Expected Number 0.000 +strand +10 : +20 CCTCTCCCaTC AC RSP01454 Mean Expected Number 0.004 -strand -177 : -183 ACCAACC Totally 2 motifs of 2 different REs have been found Description of REs found 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myb family transcription factor |LOCUS: AT1G25550 |PROD: the same as GENE |8976525..8978080 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.32 C - 0.29 1 tatccccgaa tattctccct gtatcaaaca aacctcagcc tattcctata 51 tttaccattc taccctttcc caagtaaaat ccgaataaat ctaaacatca 101 agaagattcg gttttaggta cgcgacggcc cgacctcgat tagacaccaa 151 tcctctttct ctgcccttta aaacttccaa cttaaaaacg tcaaagtttt 201 ATCCTTTCTC TCTCATTTTA GATCCAAAAC TCTTCTCTGT CTCTCTCAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.005 +strand -104 : -97 ATCAAGAA AC RSP00838 Mean Expected Number 0.005 -strand -73 : -78 CCGTCG AC RSP01640 Mean Expected Number 0.008 +strand +35 : +44 CTcTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NADP-dependent oxidoreductase, putative |LOCUS: AT1G26320 |PROD: the same as GENE |9105195..9107176 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.29 C - 0.16 1 ctataaatac tcttttattc ttaagaattt ttttctcctg tattttccaa 51 aaataatagt ccatttttac cttatttatc tcccgaagaa attggatcga 101 TCAATgaagg aaagaaatca aatggtctta tgatcaaagc aacattgaga 151 aattcaatct acaaaaagca gacacatctc gacgtaagaa agaagaaatt 201 ATCATAGTGA TCAAAAGTAC GTAAAATCGG AAATGACGAA CGCAGAAGCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00663 Mean Expected Number 0.000 +strand -119 : -107 CCCGAAgAAATTG AC RSP00792 Mean Expected Number 0.009 +strand -66 : -57 CaAAGCAACA AC RSP01296 Mean Expected Number 0.010 +strand -200 : -192 CTATAAATA AC RSP01301 Mean Expected Number 0.002 +strand -200 : -191 CTATAAATAC Totally 4 motifs of 4 different REs have been found Description of REs found 635. Group RE: SRD motif /AC: RSP00663//OS: Glycine max /GENE: VspB/RE: SRD motif /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: B5 #6 |LOCUS: AT1G26340 |PROD: cytochrome b5, putative |9113887..9114958 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.35 C - 0.18 1 aatgatgata aataaatctt ttatgtatat tcgttgctac aacttacaag 51 gcatttctga tttctcagta attttttatt ccatttttgc taattttcca 101 aaaaggaatt aagaatatga aattataaat aattaaatta aacgacgtcg 151 ttgctgagag ggctctagct cttattatct ttctcctcta gtctgctcat 201 CTTTTCGCGT GGTCGACCAA ACCTAAAACC CCCAAAAAGA GAAAAATCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.007 -strand +41 : +32 CTCTTTTTGG Totally 1 motifs of 1 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT1G26460 |PROD: the same as GENE |9151719..9154727 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.26 C - 0.17 1 atatgatgta tgtgtggttt ctttgaaaaa tcaaggtttg ggctatatct 51 attaatgggc tgggctttat actaaaagac taaaacatgt cgaggagtca 101 aagacaactt ctgaaaaaaa gacatcagat ttcttggata atctctaaaa 151 tgccactgcc gtcatcgaga acagatcgtc acgaccggag ttagtagtgt 201 CTAAAAACTC ATCTGAGAGA GAAGAACTCA GAAAACCCTA AACACAGATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +41 : +33 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +33 : +41 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand +32 : +41 aAAACCCTAA AC RSP01600 Mean Expected Number 0.007 -strand -173 : -180 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GRF12 |LOCUS: AT1G26480 |PROD: 14-3-3 protein GF14 iota (GRF12) |complement(9156319..9157937) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.29 C - 0.20 1 ataggattag ataaaacggt gtcgttaggg agcgaaaagt tcgttaagtt 51 agttagaaag aatagcgagg aaaaacccag gaatttcgca gacacagagg 101 tgtgttcgga tctcaaggtt gagattcagt cttcttccgc catttgcgaa 151 ccatcttcga aactcttttt atatttctct ctttccctcc catctctttc 201 GATTATTTTA TTTATCTCAC CAAGGAAAAC AAAACACAAA ACAAACAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -174 : -187 tAACGACACCGTTT AC RSP00920 Mean Expected Number 0.001 +strand -166 : -155 AAAAGTTcGTTA Totally 2 motifs of 2 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G26550 |PROD: the same as GENE |9171119..9172926 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +668 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.31 C - 0.20 1 tacaaatgaa aagcagagac agacatttac gaaaatagga aaaatattta 51 ttttcttttt ggcgcgatta aatttacgaa aaatagaaaa tatttgataa 101 gaagagtatc ttATTGGgcc taatagccca accatgaatg gccaagccca 151 tattaatgaa tgggtttaat gttccatctc taatccccac aagacttttc 201 AGCAAACAAA TCTCTCTTTC TCTCTCTCAC TCTCTGCTCG ATCGTTCAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -174 : -159 TTACgAAAATAGGAAA AC RSP00080 Mean Expected Number 0.004 -strand -159 : -174 TTTCCTATTTTcGTAA AC RSP00085 Mean Expected Number 0.005 +strand -127 : -112 TTACgAAAAATAGAAA AC RSP00085 Mean Expected Number 0.005 -strand -112 : -127 TTTCTATTTTTcGTAA AC RSP00501 Mean Expected Number 0.004 -strand +40 : +34 CGAGCAG AC RSP00861 Mean Expected Number 0.002 -strand +21 : +13 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +27 : +19 AGAGAGAGA AC RSP00876 Mean Expected Number 0.000 -strand -135 : -143 CGCGCCAAA AC RSP01014 Mean Expected Number 0.010 +strand -198 : -189 CAAATGAAaA AC RSP01015 Mean Expected Number 0.010 +strand -198 : -189 CAAATGAAAa AC RSP01283 Mean Expected Number 0.000 -strand +34 : +18 GAGAGtGAGAGAGAGAA Totally 11 motifs of 9 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 812. Group TF: AtE2F /AC: RSP00876//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 1 E2F (D1) /TF: AtE2F 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLE9 |LOCUS: AT1G26600 |PROD: CLE9, putative |9191594..9192388 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.37 C - 0.24 1 atctaggatc gaaatgtata taataaagtt cacgggttgg tatttatgtc 51 aatgaaaacg aactaagcga aggacccact tttttttgta taaccagttt 101 tgccctctca tttactaaaa ctaaccgtca taacatcgat tcatgtgctt 151 cttctgtgtt gcatttatat cccaatttgc ttccaccaaa tatcttccct 201 CTCTCGATTT TAAACTTCTT CTTCTCCAAG ACCACTTCTC ACTTTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.010 -strand -34 : -41 TAAATGCA AC RSP01454 Mean Expected Number 0.003 -strand -160 : -166 ACCAACC Totally 2 motifs of 2 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: eukaryotic translation initiation factor 5A |LOCUS: AT1G26630 |PROD: the same as GENE |9205823..9207402 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.19 1 atacatatga cagtgaatat aatatatatg tcaaatacag aaataaatac 51 aatttaaaat atctatataa aatacagttt ttttgaatcc tttttttttt 101 atgaagaggc ctgttttgag tttgggctgg gctgaATTGT ttttacccac 151 cacaacattc ctaaggataa taatacagta accctagaaa ggtttcctcc 201 ACCTTCCTCT TCCCCTCCTA TATAAAAAAA ATCGACATCG CTTTTGCTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00572 Mean Expected Number 0.009 +strand -175 : -168 ATATGTCA Totally 1 motifs of 1 different REs have been found Description of REs found 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: emp24/gp25L/p24 family protein |LOCUS: AT1G26690 |PROD: the same as GENE |complement(9224132..9225738) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.22 1 gacacacgta aatagaattt agctttgcat gtgaaactaa aaaaaataac 51 actatgttgt cccgacatac taaaagtcaa agtcagcgtt acgaaaactc 101 tagatgagaa agagagtttc ttcgacgtgt atttcacgag ttaaaattaa 151 acacgtgtca taagctctct tgttccattg tacgttgttg agttcttctt 201 CTTCGTCTTC CATCTCTCTA CCAACTCCAC GATCAACGAA ACCAAAGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.009 +strand -181 : -172 TAgCTTTGCA AC RSP00524 Mean Expected Number 0.009 +strand -50 : -44 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -43 : -49 ACACGTG AC RSP00861 Mean Expected Number 0.001 +strand -94 : -86 AGAAAGAGA AC RSP01035 Mean Expected Number 0.008 +strand -48 : -42 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -50 : -43 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -43 : -50 ACACGTGT AC RSP01261 Mean Expected Number 0.006 -strand -190 : -197 TTACGTGT Totally 8 motifs of 6 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G26710 |PROD: the same as GENE |complement(9232315..9233131) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.37 C - 0.18 1 gtttaaatct caactcattc aaacggtatg agcctaaatt catgacatga 51 attcagtaaa atgaaactag aaaattgaat aatcatccgt ccttcttatt 101 ttctctttgt agcatcaaag tcacaccttt tttttcctct cttctatttt 151 tgaactcatt gctttcttct tatatattag agaaattgta gataactgcc 201 AATTTTAAGG TGGAGAAAAT GACAATACCA ACATATAACC TTTTATGCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.002 -strand -59 : -67 AGAGAGGAA AC RSP01598 Mean Expected Number 0.008 -strand +24 : +17 TGTCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G26740 |PROD: the same as GENE |complement(9244974..9246588) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.31 C - 0.21 1 agacgacgaa gacacaaggg tttcagaaat ggctcgattt gataaaacct 51 catggttcat gaattaaacc gggtacatca cactctaaat tacggtctaa 101 aatcggttaa cagagcaATT GTatggttcg tatgtcaaaa cgcagccgtt 151 tcgtaaatac atttgccttg ataaattttc acctcttttg ggtttcttct 201 ACTAGTCTTC ACTTCCGTCA GCTATAGCTT TGGAGAAACT GCATCAATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.003 +strand -65 : -58 CAAAACGC AC RSP00979 Mean Expected Number 0.008 -strand -75 : -84 CCATACAAtT AC RSP01033 Mean Expected Number 0.006 +strand -19 : -10 CCTCTTTTGG AC RSP01103 Mean Expected Number 0.005 +strand -156 : -149 AAACCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G26750 |PROD: the same as GENE |9246774..9248261 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.27 C - 0.18 1 gaagtgaaga ctagtagaag aaacccaaaa gaggtgaaaa tttatcaagg 51 caaatgtatt tacgaaacgg ctgcgttttg acatacgaac catacaattg 101 ctctgttaac cgattttaga ccgtaattta gagtgtgatg tacccggttt 151 aattcatgaa ccatgaggtt ttatcaaatc gagccatttc tgaaaccctt 201 GTGTCTTCGT CGTCTCTGGT AAAACAATAA CAGATCAAGC GAAGAAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.002 -strand -121 : -128 CAAAACGC AC RSP00979 Mean Expected Number 0.008 +strand -111 : -102 CCATACAAtT AC RSP01033 Mean Expected Number 0.010 -strand -167 : -176 CCTCTTTTGG AC RSP01103 Mean Expected Number 0.004 -strand -30 : -37 AAACCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G26800 |PROD: the same as GENE |complement(9285086..9286311) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.32 C - 0.19 1 ttcttttctt cttatccacc atcatgcata taaatatgtg caacagcctt 51 caaaattccc aaaaacaccc ttcgtcgtct tgaagtataa ctctctggaa 101 tgaggagagt ttagacaaat cataacgttg agtcagagaa aaatataaca 151 tagatatttg ctaatggata agcatatcga taacatcaat cattgtcttc 201 AACTTAATTT ATTTTAGGCC CATGGGAAGA AAAGTCTTCT GCGTTAATAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01470 Mean Expected Number 0.008 +strand -179 : -170 TCATGCATaT Totally 1 motifs of 1 different REs have been found Description of REs found 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L10 (RPL10B) |LOCUS: AT1G26910 |PROD: the same as GENE |9321637..9322947 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.37 C - 0.20 1 gccgtgacgt aatcgccaat gtcatcagaa agaaaaaaaa gtcgccggaa 51 taaacacgga tttgtttttt aagcttaaaa tatcaaattg ggctttagtt 101 ccttaatggg ccttattttg gtccaaatcc agttacgtgg caaagagaat 151 tagggctctt tgttcttctt atttaaaaaa gttacgcctt tcttcttctt 201 CTTCTTCTTC TTCTTCTTCT TCTTCTTCAT TTCTAGGATT CGAAACAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -67 : -60 TACGTGGC AC RSP00112 Mean Expected Number 0.003 +strand -196 : -189 TGACGTAA AC RSP00247 Mean Expected Number 0.004 -strand -60 : -69 GCCACGTAAc AC RSP00860 Mean Expected Number 0.001 +strand -174 : -166 AGAAAGAAA AC RSP01032 Mean Expected Number 0.001 -strand -80 : -89 CCAAAATAAG AC RSP01034 Mean Expected Number 0.004 +strand -66 : -60 ACGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G26940 |PROD: the same as GENE |9343113..9345132 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.27 C - 0.20 1 aagcccaagc caatatagaa aaataatact gcacaacagc acaagggatt 51 acttagaaaa tgagatacac atgtacataa gaatatgggc cttactaaag 101 ggaacaatgg tttactattt tgggccttaa ctaaataaac ATTGGgccca 151 atacgattcc ggttatcgtc ttcttcgacg ggttaattca cgactaacag 201 AAAATTTCTC TGCCGGTGTT GACTTCAAAC TCTCTTTGAT TAGATCGGCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01093 Mean Expected Number 0.002 -strand +44 : +34 TCTAAtCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: homeobox-leucine zipper protein |LOCUS: AT1G26960 |PROD: the same as GENE |9355907..9357437 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.31 C - 0.22 1 tctttctatt cgtaaaaaac aagaattatc tttaaaaata cttgatatga 51 aaaactacat agtacatatc cgtaatctac caaaacggat acaacgtagt 101 aaaattaggg attttccaaa acatacaaaa gcccatattc cacccctcca 151 aagactataa tcatcccatg tctacctctc tgtctcatcg gctttgagtc 201 TTGTCTCCTA TTTTATATAC TCATATAATA AACAAAATAA AACCAAATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.003 -strand -158 : -170 AAgTATTTTTAAA AC RSP01641 Mean Expected Number 0.003 +strand -2 : +8 TCTTGTCTCc AC RSP01687 Mean Expected Number 0.003 +strand -12 : -6 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G27150 |PROD: the same as GENE |9429044..9432235 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.31 C - 0.17 1 acattcatgt tttagcatat agtttcatat tattatttgg ttaattgttt 51 atatatactg aaaaaaataa aataatctta attggtttat ccaaaaggcg 101 agaaaagcca aaaagggaca cgtcatacta ctcactcgta acaagacacg 151 agtttttttt aataacaaaa tgaattgagt gattgatgac gacgacaagc 201 AAAATGCAAA ATCGCTGTCT CCTTCATGCT TCGATCAATC AAACCATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.005 -strand -2 : -11 CTTGTCGTCg AC RSP00158 Mean Expected Number 0.009 +strand -167 : -157 TATTTGgTTAA AC RSP00211 Mean Expected Number 0.009 +strand -160 : -150 tTAATTGTTTA AC RSP00460 Mean Expected Number 0.004 +strand -84 : -75 GACAcGTCAT AC RSP00749 Mean Expected Number 0.009 -strand -30 : -41 ATTTTGTtATTA AC RSP01033 Mean Expected Number 0.006 -strand -84 : -93 CCCTTTTTGG AC RSP01035 Mean Expected Number 0.006 -strand -78 : -84 ACGTGTC AC RSP01258 Mean Expected Number 0.003 -strand -76 : -83 TGACGTGT AC RSP01692 Mean Expected Number 0.004 +strand +30 : +37 TTCGATCA Totally 9 motifs of 9 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G27210 |PROD: the same as GENE |complement(9455455..9458013) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.34 C - 0.19 1 aagtattttt cacatatatt actataatgt tagaacatta cattttttat 51 ttcgtcaagt agtgtattta tttattgcaa tatctaaaag acattaacaa 101 aagcaagatt atgaaaatag taacattatt taatttattt acacaaagtc 151 cctcttcttt gtaagcattt aaaaacccaa atagcccaaa ccgtctctac 201 GCATAATCGG AGAAATCTCT CTGCCGCCAT ATTCAAAGCA GTTTCCACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.003 -strand +28 : +23 GGCGGC AC RSP00807 Mean Expected Number 0.003 +strand +23 : +28 GCCGCC AC RSP01056 Mean Expected Number 0.005 -strand -74 : -84 AATGTTACTaT AC RSP01233 Mean Expected Number 0.009 +strand -99 : -93 AGCAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G27340 |PROD: the same as GENE |9495507..9498072 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.51 G - 0.23 T - 0.20 C - 0.06 1 atttttatta caataaaatg gaactatagt gtatgttgtt tagaataatt 51 gtattaaaaa aagtataacg tacaaaagaa taaagtgaat gaggaaaaaa 101 aagagagggg caaaagtgga aaagagagag atagagaagg atggaataat 151 tggtaagaaa taatcatatg gggccaactg accatggaaa aagatgaagc 201 AAAAAAAAAA AGAGAGAGAG AAAAAGACAA TTCAGAGATA ATACAAAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00850 Mean Expected Number 0.003 +strand -28 : -23 GCCAAC Totally 1 motifs of 1 different REs have been found Description of REs found 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L17 (RPL17A) |LOCUS: AT1G27400 |PROD: the same as GENE |9515122..9516912 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.33 C - 0.18 1 atctagggtt cggtgttttt gttactgaga aaagtctaaa gagttgtctc 51 gatgtgaaac aagttccgag ggttttagcc tacaagtcgg gtgttaccag 101 cacataATTG Ggctttttaa gcctacttat caagataagt ggcccagaag 151 gcccatatga acaaatagta ctttaataca ctagttcaac taatgtattc 201 GCCGATTAGG GTTTCTTCTG TTTCACTATA TATTAAGTGT CTCCAACTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 -strand -58 : -67 GCCACTTaTC AC RSP00279 Mean Expected Number 0.002 +strand +6 : +14 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +14 : +6 AAACCCTAA AC RSP00521 Mean Expected Number 0.008 -strand -107 : -113 ACACCCG AC RSP00857 Mean Expected Number 0.005 +strand -48 : -39 CCATaTGAAC AC RSP01237 Mean Expected Number 0.009 +strand +24 : +33 CaCTATATAT AC RSP01303 Mean Expected Number 0.005 -strand +15 : +6 gAAACCCTAA AC RSP01642 Mean Expected Number 0.005 +strand +35 : +44 AAgTGTCTCC Totally 8 motifs of 8 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G27435 |PROD: the same as GENE |complement(9527561..9528865) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.31 C - 0.15 1 atcatataat actgtacact ccttttgtct tggctaactc caatcatgta 51 agtttcaatg tccaataacc tgaaaagtta tgaaaacatg tggtaattaa 101 ttttgttgtg aatcaaatta gaatccttat taaaaaagaa aattatttat 151 tcaaaaaaag ctcgtagatg aaatgggcct aaagtctact aaatgggctg 201 ATTGAAGGAA AAACTCGAAC TAATCTAAGA TCTTTGCTCT TGAGAGAGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -174 : -180 CAAAAGG AC RSP00163 Mean Expected Number 0.001 +strand -180 : -170 CCTTTTGTCTt AC RSP00913 Mean Expected Number 0.002 +strand -34 : -25 GATGAAATGG AC RSP00914 Mean Expected Number 0.004 +strand -34 : -25 GATGAAATGG Totally 4 motifs of 4 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: APT1 |LOCUS: AT1G27450 |PROD: adenine phosphoribosyltransferase 1 (APT1) |9531908..9534085 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.34 C - 0.11 1 ttaatatatt tgagatcact gtaaaagaag tactatgatt cagtttttga 51 tcgttttatg tcattagcaa cgatgaaatg aacattgtta tatatctcta 101 aatgtaacca taacATTGTg gataataatc tgttggagtg tgaacactct 151 gaaagattct aaatcatcca attttatgtg aagaaatatg tagaaaaaac 201 AAACAATGGA TGAGTTATAG GTTTGGTTAA GACTTGAAAA GTCATTGATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00779 Mean Expected Number 0.000 +strand +35 : +48 TGAAAAGTCATTGA AC RSP01031 Mean Expected Number 0.010 -strand -41 : -48 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 734. Group RE: Box IV /AC: RSP00779//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box IV /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G27480 |PROD: the same as GENE |9544501..9546272 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.32 C - 0.21 1 gcagtttaaa atcggtcggg tcgacccgac ccattgggcc ataaatctgg 51 tttcaagtta aatacgttgt ataatgccac gtaggcaaat acaaaataag 101 aaggaaatac aaaataaata tttgtagagc ctctagatga ttacgcgggt 151 tccatatcca ccatatacta cttatcttaa gccttacgtt ttaagatact 201 ACTCTGTTTT TCAAATTCAA TGGACCTTTT TCTTCAAATC TCCAGCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -118 : -125 TACGTGGC AC RSP00247 Mean Expected Number 0.003 +strand -125 : -116 GCCACGTAgG AC RSP01034 Mean Expected Number 0.006 -strand -119 : -125 ACGTGGC AC RSP01259 Mean Expected Number 0.002 -strand -117 : -124 CTACGTGG AC RSP01719 Mean Expected Number 0.000 +strand -126 : -115 TGcCACGTAGGC Totally 5 motifs of 5 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1527. Group TF: STF1/HY5 /AC: RSP01719//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: G/A-box (2) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G27530 |PROD: the same as GENE |complement(9562586..9563926) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.24 C - 0.19 1 agatttttac attttgtaat caaagtatca aaccaaaaca aatcaaacta 51 aaccaaaagg tttttaagca atttgaacca aatgaaccaa catcaaacca 101 aatcgcatga tCCAATacgg tttgattgtt tgtttcggtt acaatggtga 151 caactgaaaa tagctaaaag aggaggaatc agaatcaagc atccgattcc 201 GATCGACAAA TAGGGTTTAG AATCCACACA CCCAAATCGG AAGGCGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.000 -strand -186 : -197 AAAAtGTAAAAA AC RSP00040 Mean Expected Number 0.005 -strand -67 : -73 AACAAAC AC RSP00629 Mean Expected Number 0.005 -strand -193 : -200 AAAAATCT AC RSP00749 Mean Expected Number 0.001 +strand -190 : -179 ATTTTGTAATcA Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyl transferase family 43 protein |LOCUS: AT1G27600 |PROD: the same as GENE |complement(9603165..9606088) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +220 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.33 C - 0.24 1 attacaacta aatccaattt atgttttaat tattgttttt accatagtag 51 accatttcct cgaaacttaa acgtaatcat tattttgcca gagtgtacga 101 gccataatct cgccacgtgt cccacgaact cgcatagctt aaagattttt 151 ttttaacaaa caaacaaaca gtgctttttc cgcaactttc tccgccagct 201 CAATTTCAGA TCTCGGCGGC GACGGATCCA TTCCAATCGT GTTTCAGATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -81 : -89 ACACGTGGC AC RSP00044 Mean Expected Number 0.001 -strand -79 : -89 GGACaCGTGGC AC RSP00056 Mean Expected Number 0.006 +strand -89 : -80 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -89 : -80 GCCACGTGtC AC RSP00073 Mean Expected Number 0.001 -strand -80 : -89 GaCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -88 : -79 CCACGTGtCC AC RSP00175 Mean Expected Number 0.001 -strand -82 : -89 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -80 : -89 GACACGTGGC AC RSP00340 Mean Expected Number 0.006 +strand -89 : -80 gCCACGTGTC AC RSP00438 Mean Expected Number 0.006 +strand +15 : +20 GGCGGC AC RSP00524 Mean Expected Number 0.009 -strand -81 : -87 ACACGTG AC RSP00807 Mean Expected Number 0.006 -strand +20 : +15 GCCGCC AC RSP01034 Mean Expected Number 0.007 -strand -83 : -89 ACGTGGC AC RSP01035 Mean Expected Number 0.009 +strand -86 : -80 ACGTGTC AC RSP01255 Mean Expected Number 0.002 -strand -81 : -88 ACACGTGG Totally 15 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G27930 |PROD: the same as GENE |complement(9731252..9732706) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +340 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.29 C - 0.19 1 tgaacaataa cagataacaa atccacaagt ccattttaaa acaagaagac 51 aaaatatcaa acgttatcca ccggtaaact catcatagat taccctaata 101 cgtATTGAga cgaaatcaac tgaaattgta tgggcgatct tgtttttttg 151 cttatatttg ggatgaacga tcttgtttaa tgttactaat tgttatcttt 201 AGCAAACCGA AGTGGGAACG AAACCCCATG CTCCAAGTCC AATTAAATAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00979 Mean Expected Number 0.005 -strand -68 : -77 CCATACAAtT AC RSP01702 Mean Expected Number 0.009 +strand -104 : -95 AAtACGTATT AC RSP01702 Mean Expected Number 0.007 -strand -95 : -104 AAtACGTATT Totally 3 motifs of 2 different REs have been found Description of REs found 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: nuclear transport factor 2 (NTF2), putative |LOCUS: AT1G27970 |PROD: the same as GENE |9746798..9748006 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.52 G - 0.14 T - 0.24 C - 0.11 1 aaaatattat cttttaaatt ctctaaatcg cactatatta aaatataaaa 51 attattttgt tggagaaaca aaccttaaaa aagatatata aaattatttg 101 ttcaaaaaaa atgttaaata gaaattaaag aaagaaaaag agaaaaaaaa 151 aacaaattga gaagaaaaga agaaaagcag cgtcgtagag acgcgaagtt 201 AAACAACAGG TCAGAGAATA AATAGAAAAA CCAAAACCCT TTAGCGTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.006 -strand -102 : -115 AAATaATTTTATAT AC RSP01210 Mean Expected Number 0.004 -strand -118 : -127 CTTTTTTAAG Totally 2 motifs of 2 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pyridoxal-dependent decarboxylase family protein |LOCUS: AT1G27980 |PROD: the same as GENE |9748742..9752995 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.11 T - 0.30 C - 0.26 1 ttcgtgtagt tttcttcacc cacccactac tatcagacta tcagaatctg 51 aaagtaaccc actttaaaaa ttgacaacac acgcaacgaa acacaaagcg 101 ccaaaaatta aggaaaaaaa ggtttgtcgt aatctgatac tattcacgcg 151 atgacctcgt ttttgatcat cttttccttt tctatattct tttctcctct 201 GTCCCAAACG ATTCACTTTT CTCACCATCT CAATCTCCAG ACCAAAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00874 Mean Expected Number 0.003 -strand -132 : -142 TTTTAAAGTGG AC RSP01003 Mean Expected Number 0.009 +strand -97 : -88 AaAATTAAGG Totally 2 motifs of 2 different REs have been found Description of REs found 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28120 |PROD: the same as GENE |complement(9812952..9815528) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +398 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.35 C - 0.21 1 ttattgttgg gccaaaatat ttaggcccat tttaagctct accgtcattt 51 taacttttta tggtccaaaa acgattcgac ttttttcctg attcgtgtag 101 agaaaaataa aaaattaaat ataaaaaatt aagtactttg ggaaaaagcg 151 aaacgtatct taccatttat acccctccaa tcaaaattga tggtttcccc 201 GATTTGAGAA ATCTTTTTCA TCATCATCAC TCTTCCTCCT TCCCCATTGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 -strand -142 : -153 AAAAAGTtAAAA AC RSP00741 Mean Expected Number 0.006 -strand -142 : -153 AAAAaGTTAAAA AC RSP01205 Mean Expected Number 0.009 +strand -174 : -165 CCaTTTTAAG AC RSP01209 Mean Expected Number 0.006 +strand -147 : -138 CTTTTTATGG Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28150 |PROD: the same as GENE |complement(9834930..9835886) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.34 C - 0.14 1 ttaatcttca gcttattcgg aaaatttcgg ctaattcatg ttagatacgg 51 acaacgtcgg atttaaccca aatcctcaat gcaaatgcac aattttctgg 101 tttgtttcgt ttttattttc tggttaaaaa aattcagatt aggtttgatt 151 aaattaaaaa taataaaata aagattgaga aatcactgtg gtcttggttc 201 AGTCTTTTGA GATAGAGATA ATTTCTGAGC CGAGCCGAGG AAGAAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01602 Mean Expected Number 0.007 -strand -21 : -28 TCTCAATC Totally 1 motifs of 1 different REs have been found Description of REs found 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: FIP1 |LOCUS: AT1G28200 |PROD: |complement(9850134..9852353) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.31 C - 0.18 1 gaatactagt atccgttaca gaaactaatt gcattaagtt tcgtctactg 51 tttaagaccg cacgagatat atatgttaga ccgactttgg gaaagaggct 101 acttaaatta tttacgatta ataatgccaa cgtaacgcgg acagacattt 151 taattcaatt attatttgtt gcctgcgaga ttcgaaccat ctcttatttc 201 ATTACTTAAC CCAAACCAAA AAAATAAAAA GTTCATTTCG AAAGAAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00953 Mean Expected Number 0.007 +strand -45 : -37 CAATTATTA Totally 1 motifs of 1 different REs have been found Description of REs found 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28250 |PROD: the same as GENE |9874234..9875560 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.30 C - 0.16 1 aagtttaatg tgacgtctat gtgtagctaa ttctgatctg tattcggtga 51 gtctgtcgta aaaagtcaat ggtcaacaat ataaacatgg gattgacaat 101 ttgacatcaa accaaaattc tgataatagt aatcacttGC AATtaccgaa 151 accggaatat accggtttac ttatcggttt taattgatat tttcttcggg 201 AACAGATTCG TCCCAGAAGA ACTCTCTGTG AAGAAGAAGA AGAAGAAAGA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: VQ motif-containing protein |LOCUS: AT1G28280 |PROD: the same as GENE |complement(9886064..9887465) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.24 C - 0.30 1 cctctatcat ttattgccaa gactaaaacc aaatagagca catttttcct 51 cccactttca acgacggcgc gtgacacgca ctctctaaat cagcgcgtga 101 gcaaagacct aaagaaacta gaaaaaagac taaagagCCA ATagcgccca 151 ccgaaaacat tttcttaccg aaccaaaaca caaagcttat taaactcaaa 201 AACAAAACAC AGTTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +49 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +31 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +29 : +21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP01024 Mean Expected Number 0.010 -strand +17 : +11 AGAAACT AC RSP01283 Mean Expected Number 0.000 -strand +50 : +34 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +48 : +32 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +46 : +30 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +44 : +28 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +42 : +26 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +40 : +24 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +38 : +22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +36 : +20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +34 : +18 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +32 : +16 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +30 : +14 GAGAGAGAGAGAGAGAA AC RSP01559 Mean Expected Number 0.008 -strand -103 : -108 ACGCGC AC RSP01559 Mean Expected Number 0.008 -strand -129 : -134 ACGCGC Totally 29 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28375 |PROD: the same as GENE |9961041..9961646 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.33 C - 0.18 1 tatttgggcc ttaccatact actgggcctt gatctatttt tgagaatcaa 51 tagccaactg atttcgtttc ctagtgtata aacaaccaag tacatgcaac 101 cctcatgatc tttatcattc ataagacgtg tgataaacaa acaactATTG 151 Aatcctcaaa ggcattatct taattacatt atacgtttga tataaaacaa 201 GCTAGTTTCA TAATTATACA AAAACATTAA TTTAACAAGA TATGAGCTGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.000 -strand -69 : -76 CACACGTC AC RSP01071 Mean Expected Number 0.005 -strand -12 : -21 CAAACGTAtA Totally 2 motifs of 2 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28395 |PROD: the same as GENE |complement(9969428..9971504) |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.32 C - 0.22 1 tttctataaa taaatatttt ttttgttaac tattttttat cataatgttt 51 actagctatt tttctcaata ttccggtaaa accaattaat gtagaagaaa 101 actagaaatt acggatttga cacgtgtcac ttatccgcag caagcaacag 151 tttcacagag cttcctgtag gtgcagctgc atcagatccc tcccttacgc 201 AAAACCCTAC GCAAAAGCCC TAAACTCTCT CTTCTCCAAA AATTGAACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 +strand -82 : -73 GACaCGTGTC AC RSP00143 Mean Expected Number 0.002 -strand -73 : -82 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -82 : -73 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -73 : -82 GACACGTGtC AC RSP00219 Mean Expected Number 0.000 +strand -83 : -72 TGACACGTGtCA AC RSP00219 Mean Expected Number 0.000 -strand -72 : -83 TGACACGTGtCA AC RSP00524 Mean Expected Number 0.007 +strand -81 : -75 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -74 : -80 ACACGTG AC RSP00792 Mean Expected Number 0.009 +strand -61 : -52 gCAAGCAACA AC RSP00936 Mean Expected Number 0.000 +strand -83 : -72 TGaCACGTGTCA AC RSP00936 Mean Expected Number 0.000 -strand -72 : -83 TGaCACGTGTCA AC RSP01012 Mean Expected Number 0.005 -strand -29 : -35 ACCTACA AC RSP01035 Mean Expected Number 0.006 +strand -79 : -73 ACGTGTC AC RSP01035 Mean Expected Number 0.007 -strand -76 : -82 ACGTGTC AC RSP01176 Mean Expected Number 0.000 -strand -23 : -33 AGCTGCaCCTA AC RSP01195 Mean Expected Number 0.001 +strand -188 : -176 AATATTTTTTtTG AC RSP01256 Mean Expected Number 0.002 +strand -81 : -74 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -74 : -81 ACACGTGT AC RSP01296 Mean Expected Number 0.007 +strand -197 : -189 CTATAAATA Totally 19 motifs of 12 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1087. Group TF: Zmhox1a /AC: RSP01176//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 3 /TF: Zmhox1a 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28510 |PROD: the same as GENE |10023875..10026281 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.25 C - 0.21 1 tatctaagaa aaatacttac aaaaagaaca ttattatcac atatgcacag 51 aaaccgccaa aattgggtct tttaaattag attaaagaaa ttgaacttga 101 caaagaagaa caaacaaaat agaggggtct attccacaaa taaaataaag 151 ttgtaaaaag acgacccaaa caaaacgact caacttctct ctttcttctt 201 CCTCTTCACC AATCGGATCC ACGAAAAATT CGATAAACCT CGATTGATCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.003 -strand -4 : -13 AAgAAAGAGA AC RSP00861 Mean Expected Number 0.000 -strand -5 : -13 AGAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G28540 |PROD: the same as GENE |10035650..10036927 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.24 T - 0.20 C - 0.16 1 agaagaagaa gaagcagtag aaatggaagc cattgacgaa cagataaaaa 51 tcacagagag tactaaaacc ctaaggtggg gttagaggta gacgaaacaa 101 tgaaacggaa tcgttttagt acgagaaact gccacgtggc attatcttgc 151 acgtgtcagt ggctttagag ttaaatacac attttctgaa aatgattttc 201 AACATCTGAA GAAAAGAATC TAGACGACGA CAATGGCGGA GAAGAGCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -53 : -44 tGCACGTGTC AC RSP00063 Mean Expected Number 0.001 +strand -70 : -61 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -61 : -70 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -70 : -61 GCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -61 : -70 GCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -69 : -60 CCACGTGGCa AC RSP00153 Mean Expected Number 0.002 -strand -62 : -71 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -68 : -61 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -63 : -70 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -70 : -61 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -61 : -70 GcCACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -71 : -60 TGcCACGTGGCA AC RSP00219 Mean Expected Number 0.000 -strand -60 : -71 TGcCACGTGGCA AC RSP00279 Mean Expected Number 0.002 -strand -127 : -135 TTAGGGTTT AC RSP00340 Mean Expected Number 0.001 +strand -53 : -44 TgCACGTGTC AC RSP00369 Mean Expected Number 0.002 +strand -135 : -127 AAACCCTAA AC RSP00524 Mean Expected Number 0.006 -strand -45 : -51 ACACGTG AC RSP00525 Mean Expected Number 0.009 +strand +2 : +8 ACATCTG AC RSP00682 Mean Expected Number 0.002 +strand -70 : -61 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -61 : -70 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -69 : -62 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -62 : -69 CCACGTGG AC RSP00887 Mean Expected Number 0.004 +strand +14 : +22 AAGAATCTA AC RSP00936 Mean Expected Number 0.000 +strand -71 : -60 TGCCACGTGgCA AC RSP00936 Mean Expected Number 0.000 -strand -60 : -71 TGCCACGTGgCA AC RSP00938 Mean Expected Number 0.000 +strand -71 : -60 TGCCACGTGGcA AC RSP00938 Mean Expected Number 0.000 -strand -60 : -71 TGCCACGTGGcA AC RSP00974 Mean Expected Number 0.002 -strand -44 : -53 gACACGTGCA AC RSP01034 Mean Expected Number 0.007 +strand -67 : -61 ACGTGGC AC RSP01034 Mean Expected Number 0.004 -strand -64 : -70 ACGTGGC AC RSP01035 Mean Expected Number 0.006 +strand -50 : -44 ACGTGTC AC RSP01303 Mean Expected Number 0.003 +strand -136 : -127 aAAACCCTAA AC RSP01636 Mean Expected Number 0.001 -strand -31 : -41 CTCTAAAGCcA Totally 33 motifs of 22 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G29040 |PROD: the same as GENE |10134055..10136110 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.30 C - 0.18 1 aaaaagaaga tgagaccgta catggcgatt ttggaagagt gtagaaggtt 51 gatatgttct ctcgcagagc agtccaagac tccaagggtt tctgggttta 101 tcgaaggaga aagagcaacc tttatgccct gactttaaac ATTGTcgttt 151 tgtgtcaaat ttgagttttg aaaacaacac ccttatttat catttctctc 201 AACTTTGTCC CAAAAATTTA TTATAGAGCG AACCAATCAA ACACTAGTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00075 Mean Expected Number 0.003 +strand -183 : -174 GTACaTGGCG Totally 1 motifs of 1 different REs have been found Description of REs found 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G29050 |PROD: the same as GENE |complement(10136217..10139194) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.32 C - 0.16 1 tggaacatca agtttttaat gtacacggta aaatcggacc caaaactaca 51 acaaaatact attgtacgtc cgtggcatta gagttgagat cacctaaccg 101 tgccactagc ttgggtttca taATTGAcat aattgtgtac attaaaatat 151 aagtattatt taatcacatt aagaaatatg cacagaaact ttttatcata 201 ATTATATGTA TGTACATGCA TTAGTGCATA TATACATACA CAAATGAGTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00534 Mean Expected Number 0.001 -strand +5 : -8 ATAATtATGATAA AC RSP01470 Mean Expected Number 0.009 -strand +23 : +14 TaATGCATGT Totally 2 motifs of 2 different REs have been found Description of REs found 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G29060 |PROD: the same as GENE |10147679..10149667 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.32 C - 0.23 1 aatttgtggt ccactaaagt tgggatcggc ccgttaaaaa agcccataaa 51 ccaaaaaata ttggctgacg aatatttcaa aactgccatt ctttatttgt 101 ttacataact caaaaacatg acgataatca aCCAATatta aaacgccacg 151 tgttccctcg cggtcattta tcattgaatc gaagagcacc cgcccagctt 201 GTTTCAATCG TCGTCGTTTT TCTCTTTGAT TTGCCTGAAA TTTGTTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -48 : -56 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -49 : -56 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -47 : -56 aACACGTGGC AC RSP00524 Mean Expected Number 0.009 -strand -48 : -54 ACACGTG AC RSP00819 Mean Expected Number 0.003 +strand -56 : -47 GCCACGTgTT AC RSP01034 Mean Expected Number 0.007 -strand -50 : -56 ACGTGGC AC RSP01255 Mean Expected Number 0.002 -strand -48 : -55 ACACGTGG AC RSP01501 Mean Expected Number 0.005 -strand -6 : -12 GGGCGGG AC RSP01776 Mean Expected Number 0.008 -strand -101 : -111 ACAAaTAAAGA Totally 9 motifs of 9 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1361. Group RE: GC-box /AC: RSP01501//OS: Triticum aestivum /GENE: H1 (TH315)/RE: GC-box /TF: unknown ||Identical REs AC: RSP01502 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ribosomal protein L34 family protein |LOCUS: AT1G29070 |PROD: the same as GENE |10149777..10151344 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.23 T - 0.33 C - 0.17 1 gcctgttttt aacagtttac atgaagcaaa attgtatcac agaacaacag 51 catgagatat tttagaccag ttcaaatctg gccttaactt gattaattac 101 ccgtccggtC CAATtcagta ttgggctttt atagtcttat gggctgaagt 151 gtcgtgatac gtgtattatt atggttggtt cttatgcgta agtttatggt 201 GGTATCGTCC GTAGACGATA GAGGTTCCAC ACTATGTAAA GGAGACCGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.004 -strand -102 : -110 TAATTAATC AC RSP00858 Mean Expected Number 0.005 -strand -100 : -107 GGTAATTA AC RSP01274 Mean Expected Number 0.005 -strand -36 : -45 TaCACGTATC AC RSP01288 Mean Expected Number 0.006 +strand -44 : -37 ATACGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G29250 |PROD: the same as GENE |complement(10223252..10224713) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.20 G - 0.24 T - 0.35 C - 0.21 1 ggcatagctt cttcttcttc tccggtgagt gattgaatca aaagaagagt 51 cttctcgaag attcaattca acgatctgat cggataacgc cgattttgct 101 catcgcagaa ttaattttcc ccCCAATtgg gcctattggg ctggagccta 151 gcccatttgt gtaggttgtg ttaaaacgat gtcgtttggc atttcaagtt 201 AGGGTTTTTT GGGGGTTTGG TTCAAGCTTC ATCGTCGTCT CTCTGTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -14 : -27 AAACGACAtCGTTT AC RSP00279 Mean Expected Number 0.004 +strand -2 : +7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 -strand +7 : -2 AAACCCTAA AC RSP00871 Mean Expected Number 0.009 +strand -177 : -168 GGTGAGTgAT AC RSP01091 Mean Expected Number 0.001 +strand -169 : -159 ATtGAATCAAA AC RSP01250 Mean Expected Number 0.005 +strand -143 : -134 AAgATTCAAT AC RSP01303 Mean Expected Number 0.006 -strand +8 : -2 aAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein transport protein sec61, putative |LOCUS: AT1G29310 |PROD: the same as GENE |10252292..10254676 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +356 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.35 C - 0.15 1 atatttatta agttgaatca aaactcatta gtcaatcttt tcataaaatt 51 taataagagt gtatttacta tttagtcatg ttttcatcac ttaatcagaa 101 acgaatgtat tttgccacgt gtatccgtat tATTGGttcg atgacatgta 151 attcgtgtaa aacttcttac aaaaaaagct tcaacatcag cttcaagatc 201 AATCAAAAAC GAAAAAAAAC AAAAAAAAAA CTTTGAATCC GTTTGTTGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -79 : -87 ACACGTGGC AC RSP00175 Mean Expected Number 0.000 -strand -80 : -87 CACGTGGC AC RSP00204 Mean Expected Number 0.000 -strand -78 : -87 tACACGTGGC AC RSP00460 Mean Expected Number 0.004 -strand -51 : -60 tACATGTCAT AC RSP00524 Mean Expected Number 0.004 -strand -79 : -85 ACACGTG AC RSP00682 Mean Expected Number 0.000 +strand -87 : -78 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -78 : -87 TACACGTGGC AC RSP00913 Mean Expected Number 0.001 +strand -61 : -52 GATGACATGT AC RSP00997 Mean Expected Number 0.001 +strand -61 : -52 GATGACATGT AC RSP01034 Mean Expected Number 0.002 -strand -81 : -87 ACGTGGC AC RSP01255 Mean Expected Number 0.001 -strand -79 : -86 ACACGTGG AC RSP01593 Mean Expected Number 0.000 -strand -78 : -89 TACACGTGGCAa Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: COR414-TM1 |LOCUS: AT1G29395 |PROD: stress-responsive protein, putative |complement(10288236..10289579) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.29 C - 0.21 1 tatggtaaag ctgacgtggt atcctaagtg gggtggattt gaattggagt 51 tgattccaac ggtggagatt caaagattct ttgattgata gtgagcgact 101 ctcgttttCC AATcacgtgt aactcggctc cactctaaag cacgaaatca 151 acacgtccac gtaacgatca tatattcatg cagtgatata gtcgtttaac 201 AGAAAGATCA CTCCGTCAAT CTTTCCACCA CTGTGACTAA ATCTAAACAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.003 +strand -45 : -36 TCCACGTAaC AC RSP00208 Mean Expected Number 0.000 -strand -181 : -192 aCCACGTCAGCT AC RSP00214 Mean Expected Number 0.002 +strand -189 : -182 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -182 : -189 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -181 : -190 aCCACGTCAG AC RSP00355 Mean Expected Number 0.007 +strand -4 : +4 TAACAGAA AC RSP00817 Mean Expected Number 0.004 -strand -80 : -89 TACACGTGaT AC RSP00837 Mean Expected Number 0.005 -strand +22 : +13 AGATtGACGG AC RSP00978 Mean Expected Number 0.003 +strand -89 : -80 ATCACGTGTa AC RSP01031 Mean Expected Number 0.007 -strand -121 : -128 AGAATCTT AC RSP01274 Mean Expected Number 0.004 +strand -45 : -36 TCCACGTAaC AC RSP01636 Mean Expected Number 0.001 +strand -68 : -58 CTCTAAAGCAC Totally 12 motifs of 12 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin-responsive family protein |LOCUS: AT1G29430 |PROD: the same as GENE |complement(10302636..10303321) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 tttataccca catgatcatg tcttctaacc acaagttatc tatagtccac 51 tagttgaatg cagacataat tgattaccaa cttgggacca tagattagaa 101 acataatcat gtgttgtgtc tggttggATT GCtcaggagc ttgtcttaac 151 ctaatagttt ctccttctat ataatgaaac aaagcttatt ggtattcctc 201 ATCAACCAGA ACTTTTATTC AAAGAGATCT ATACAAACAG AACTCACCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01016 Mean Expected Number 0.009 +strand -104 : -97 AGAAACAT AC RSP01046 Mean Expected Number 0.000 -strand -70 : -78 CAATCCAAC Totally 2 motifs of 2 different REs have been found Description of REs found 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: double-stranded DNA-binding family protein |LOCUS: AT1G29850 |PROD: the same as GENE |10447747..10449930 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.25 T - 0.34 C - 0.10 1 tttccattgt tgtttcatat tacagtatag tggactgaat atgataaatc 51 ttgttttggg tggagatatg ggtgtaaatt ggacgaatta taagtttata 101 gttataatag taaaaggaca aactttatcg gggcgaatat gtaaaaacgg 151 gacagactgt atatgaagcg cgtctaagaa aagctacgtt tgggtttttg 201 AAGCATTTCC CCTTTTAGAG AAGAGAGCTG TGTTGGTTTT TGAGGTAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00874 Mean Expected Number 0.004 -strand +19 : +9 TCTaAAAGGGG AC RSP01093 Mean Expected Number 0.002 +strand -28 : -18 TCTAAGaAAAG AC RSP01209 Mean Expected Number 0.010 +strand -151 : -142 CTTGTTTTGG Totally 3 motifs of 3 different REs have been found Description of REs found 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycyl-tRNA synthetase / glycine--tRNA ligase |LOCUS: AT1G29880 |PROD: the same as GENE |complement(10459462..10462785) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.34 C - 0.21 1 aatgttcaca tatttgtttg gtgttaaagc atttggaaaa ttttgcatcc 51 atgttgaaac gtcaaacgtg tagatgtgat gacatttaaa tgtctttact 101 ctttATTGGg tttagatttc atttcgtcaa ccaaacccac tccttgggcc 151 caaaggtttc cacattatca tcttaaaccc taagggggcc actagtaagt 201 GGAAACAAAC ACTTCGTCGA ATGCGCATCT TCTCTACATT CGTCTTTCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -18 : -26 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -26 : -18 AAACCCTAA AC RSP01086 Mean Expected Number 0.004 -strand -136 : -145 TTgACGTTTC AC RSP01105 Mean Expected Number 0.010 -strand -13 : -18 CCCCCT AC RSP01202 Mean Expected Number 0.002 +strand -51 : -44 CCAAAGGT AC RSP01303 Mean Expected Number 0.003 +strand -27 : -18 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -27 : -18 TaAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CAB2 |LOCUS: AT1G29920 |PROD: chlorophyll A-B binding protein 165/180 |complement(10474768..10475943) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.13 T - 0.24 C - 0.19 1 agtattcagt ggctcataac ttgtggtcac aaaacgcttg gctgcaatga 51 aaaaatcaaa acaaatgctg gtggactaga gattgccacg taagactact 101 aaacgataaa acaaaaatct taaaatCCAA Tgaatgaaca gataaagatt 151 acttcagata taacaaacgt tacaatatcc ctatataatc caacactatc 201 GAACCAGTTT TAATCACTCT CACTCACAAG TTAGTCATAA AAAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand -109 : -116 TACGTGGC AC RSP00114 Mean Expected Number 0.002 +strand -181 : -172 CTTGTgGTCA AC RSP00149 Mean Expected Number 0.000 +strand -60 : -28 GATAAAGATTACTTCAGATATAACAAACGTTAC AC RSP00247 Mean Expected Number 0.003 +strand -116 : -107 GCCACGTAAG AC RSP00248 Mean Expected Number 0.001 +strand -116 : -107 GCCACGTaAG AC RSP00307 Mean Expected Number 0.009 -strand -159 : -164 GCCAAG AC RSP00734 Mean Expected Number 0.008 +strand -171 : -164 CAAAACGC AC RSP00736 Mean Expected Number 0.000 +strand -181 : -140 CTTGTGGTCACAAAACGCTTGGCTGCAATGAAAAAATCAAAA AC RSP01034 Mean Expected Number 0.003 -strand -110 : -116 ACGTGGC AC RSP01054 Mean Expected Number 0.003 +strand -35 : -25 AACGTTACAAT Totally 10 motifs of 10 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 145. Group TF: CGF-1 /AC: RSP00149//OS: Arabidopsis thaliana /GENE: cab2/RE: CGF-1 BS /TF: CGF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 699. Group TF: DET1; CDA-1; CCA1 /AC: RSP00736//OS: Arabidopsis thaliana /GENE: CAB2/RE: DtRE /TF: DET1; CDA-1; CCA1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SGS domain-containing protein |LOCUS: AT1G30070 |PROD: the same as GENE |complement(10546575..10548135) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.20 1 aactttaata tagagtgaaa gtttctgctg aaaataaaaa aattgtttga 51 taaccaaatg ttttactaaa tgggcttggc tctgtatgaa agaagaaagc 101 ccaagaagct aaagcatcaa aaagcTCAAT atgaggtctt ctagtacttt 151 ctagtttcca caagactctc tcgttccctt cgctttgtgc ttgtaatata 201 AACACAATTT CGCAACCTTC GTCTGTCCAG ATTCTACGTT TCGTTTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.006 -strand +42 : +33 GAaACGTAGA AC RSP01030 Mean Expected Number 0.009 -strand -175 : -182 AGAAACTT AC RSP01086 Mean Expected Number 0.010 +strand +33 : +42 TcTACGTTTC Totally 3 motifs of 3 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: photosystem I reaction center subunit psaK |LOCUS: AT1G30380 |PROD: the same as GENE |10722244..10723229 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.17 T - 0.21 C - 0.19 1 cccaaaatga aaggttttga aagaaaatct gcactgtgat gacgatgaga 51 cagtcttatc cagagttgaa atcagccaat agacacttga cacctcagca 101 agaggtaacc taaacagaat ccatttctgt gatcgccaaa gccacacgat 151 gattcttgcc taaatcattt taaagactgt atagaggaaa acaaaactgc 201 AAAAACAAAA ATAAAAAAAA CATCGCACAA GAAAATAAAA GATTTGTAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00722 Mean Expected Number 0.007 -strand -141 : -147 GATAAGA Totally 1 motifs of 1 different REs have been found Description of REs found 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G30530 |PROD: the same as GENE |10814641..10816565 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +258 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.29 C - 0.15 1 gtagacaaat tagaccgctt tgtccgttac atccattcaa agagtaaaga 51 catctttaaa gacactcttg attgatcaag acttttgacc tagaatctaa 101 aaacgaagaa gaagccaaat aagatcgaaa gagaggtaat ttagacacca 151 ttaattgttc gcaatgttta taggaaacac ttcattcttt tatagagaga 201 GAAAATTATA GAAAAACTAA GCAAGTACTT GTAAGTGTAT ATTTAATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.009 -strand -111 : -117 GGTCAAA AC RSP00864 Mean Expected Number 0.002 +strand -7 : +2 AGAGAGAGA AC RSP01003 Mean Expected Number 0.010 -strand -43 : -52 ACAATTAAtG Totally 3 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPase, BadF/BadG/BcrA/BcrD-type family |LOCUS: AT1G30540 |PROD: the same as GENE |complement(10816756..10819309) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.34 C - 0.14 1 tgaatatttt ttcaaataca aagactatta tcatttaacc gaattctgta 51 gtgtgtagat aaatgtatct aaaaatctac tcctcttaaa aaagttacct 101 ataaaaagaa aaatcgtgta tgaaagattt tgctataATT GTtaatcctc 151 tgtcgttgat aaaccctttt aaaataatat ttcctgaaaa agtcaacaaa 201 GACAGAGAGA TATATATCTT TCGACGAAAT TGAAAATTTC AGGTATCCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00152 Mean Expected Number 0.000 +strand -134 : -122 ATCTAAAAATCTA AC RSP01210 Mean Expected Number 0.002 -strand -107 : -116 CTTTTTTAAG Totally 2 motifs of 2 different REs have been found Description of REs found 148. Group RE: ATCTA element /AC: RSP00152//OS: Arabidopsis thaliana /GENE: psy/RE: ATCTA element /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G30630 |PROD: the same as GENE |complement(10858296..10860243) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.23 T - 0.33 C - 0.14 1 gataaaaacg cgttttattg gtaagacaag attgtcaccg tccgtatgta 51 ggagacgtgt aaagagaagc agagtgtcga actaattggg tcatcgaaaa 101 gcccATTGGg cctaaaatag ataacaatga gtgtcaattg taacattcaa 151 aatgtatggg gctttatgta catcttaagg cgtcatattt ttttggtttt 201 GATTATTCAC ACTTCAGTTT TCTTTATTTT GGAGTTAGAC ACGGATCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.006 -strand -140 : -149 TaCACGTCTC AC RSP00284 Mean Expected Number 0.008 +strand -163 : -158 CCGTCC AC RSP00333 Mean Expected Number 0.003 -strand -42 : -50 CCATACATT AC RSP00716 Mean Expected Number 0.004 -strand +1 : -8 CAAAACCAA AC RSP00836 Mean Expected Number 0.001 +strand +40 : +47 CACGGATC AC RSP01054 Mean Expected Number 0.003 -strand -54 : -64 AAtGTTACAAT AC RSP01507 Mean Expected Number 0.001 -strand +47 : +40 GATCCGTG Totally 7 motifs of 7 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G30757 |PROD: the same as GENE |10909132..10909766 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.39 C - 0.17 1 aagagttttt attatacacc attcacaagc taaagaggaa gcaccgtggc 51 atcaatttgt ttactttgac ttatcatttt aaagagaagt cagagagacg 101 actattctta cttccttttg gaattttttt atttgttgtt tatcgaaaga 151 gaagaagacc attgttgaag atatctcgcc ggccttgtga cgtgcttttt 201 AGGTTAGTTT TTTTTCAGCA ATCTCTCTCT CGTTGAATTT CTTCGAATTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00399 Mean Expected Number 0.002 -strand -6 : -13 GCACGTCA AC RSP00864 Mean Expected Number 0.002 -strand +30 : +22 AGAGAGAGA AC RSP01662 Mean Expected Number 0.001 +strand -15 : -4 TGTGACGTGcTT Totally 3 motifs of 3 different REs have been found Description of REs found 381. Group TF: AP1-like leucine zipper TF /AC: RSP00399//OS: Nicotiana tabacum /GENE: RNP2/RE: ATF /TF: AP1-like leucine zipper TF ||Identical REs AC: RSP00884 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1480. Group TF: HY5 /AC: RSP01662//OS: Arabidopsis thaliana /GENE: ARR8 (At2g41310)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G30795 |PROD: the same as GENE |10935735..10936330 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.32 C - 0.13 1 tcccataaga aagaaaaaac attttgagat tataataaag ttatttataa 51 aatgatattt attacatttc ctaaataagg tgaactcgtc atgttatata 101 ttccgaaaga caaagcgaaa agttatgatg tgtaatgaat aaacaaacat 151 ttcaatggag aatgatgtgt ttatacaaat atatatctac aaactacaat 201 GAATAATTTC ATTCTCTTAT GGCATATGGT GCTATAAACA AACACACTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.009 +strand -193 : -185 AGAAAGAAA Totally 1 motifs of 1 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ARPC2A/DIS2 |LOCUS: AT1G30825 |PROD: |10960925..10963162 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +162 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.31 C - 0.14 1 tatttttgaa acgtttaagc tcaaattgta tatttatgaa atgggctcag 51 cttatactac atagtattta cataattggg cctatgggcc atttaaattc 101 ataaaaaata taaagtacag aaataacgaa acggcgtcgt tacacttagc 151 tgagtagctg agtaataaaa ttgaacaaat tagtaaaatt ccaaaaagtt 201 ATCGAAGAAA CGTTCAAGCT GTGACAGAGA ATCTCGGTCG TCTTCGTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.002 -strand -123 : -133 CAATTATGTAA AC RSP00421 Mean Expected Number 0.005 -strand +38 : +32 ACCGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPUP4 |LOCUS: AT1G30840 |PROD: purine permease-related |10974428..10976017 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.37 C - 0.13 1 tctagaagaa tattcatatg aaatgagatg ctggataccc aactaaatat 51 ttgtattttt tagaaatttt gttagtaacg actgaatgta gtgcatcaca 101 ttaattgaaa atgaatttat ttgactaTCA ATataataat aaatgtgtta 151 gtatctttga tttcgataaa atccacaata tatacatgag tgatcagtgt 201 GTATTGTGTT GTTGGAGACT GAACCATCAA CGCTTTTTCG ACACTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00934 Mean Expected Number 0.002 -strand -151 : -160 ATATTTAGTT Totally 1 motifs of 1 different REs have been found Description of REs found 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G30880 |PROD: the same as GENE |complement(10993215..10994100) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.30 C - 0.22 1 tgatctgcac gcagacgaag aagggtatta tcgggttttc cattcgaagc 51 gttcttctct atttatttgg gcctaaattg ggccaataat tttccgaata 101 ggctctaaac ttggatagga tacatttaaa ctcgtaacca aacagaaccg 151 gagcaattcc tttgttcctc aattaggttt agactttata aaagaagtcc 201 GACGCAGAAA TTAAAACCCC TTTTGCCTCA AAACCCTGAT TTCAAATCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.003 +strand +19 : +29 CCTTTTGcCTC Totally 1 motifs of 1 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: integral membrane HRF1 family protein |LOCUS: AT1G30890 |PROD: the same as GENE |10994302..10996115 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +569 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.31 C - 0.19 1 gacttctttt ataaagtcta aacctaattg aggaacaaag gaattgctcc 51 ggttctgttt ggttacgagt ttaaatgtat cctatccaag tttagagcct 101 attcggaaaa ttattggcCC AATttaggcc caaataaata gagaagaacg 151 cttcgaatgg aaaacccgat aatacccttc ttcgtctgcg tgcagatcac 201 ACTGTTTGAT TTCTGAGGAG AATCCATTGT TTCCATTTGA AGAAAACTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01013 Mean Expected Number 0.006 -strand +39 : +30 CAAATGGAaA Totally 1 motifs of 1 different REs have been found Description of REs found 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger (C2H2 type) family protein |LOCUS: AT1G30970 |PROD: the same as GENE |complement(11040262..11043732) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.27 C - 0.15 1 ctcttagacc acttgaccat cctaacggat aacataacca atactaatag 51 tatcattata taacttacta agcattttgg aaaaatatat aattaaacaa 101 gagttatggg ttctttacga aatattacac aagaaagtac cttttcttat 151 aaatacaaga tagtaaccat tagataaagt aaaaataaat aaaaaacaga 201 GAATCTGAAG ATCGTAGAAG AAATCGAGAA AACGCTTTGT ACCAATTAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.004 +strand -61 : -55 CCTTTTC AC RSP00509 Mean Expected Number 0.004 +strand -53 : -42 TATAAATACaAG AC RSP00522 Mean Expected Number 0.003 +strand -192 : -186 CCACTTG AC RSP00548 Mean Expected Number 0.001 +strand -38 : -28 GTAACCATTaG Totally 4 motifs of 4 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G31130 |PROD: the same as GENE |complement(11114682..11116176) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +267 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.31 C - 0.24 1 accatttctt tgtaagtata caagattcat aaactctata gaaagtctag 51 ttccatgatt gcgtctcagc tcatgcaaag agagttgtgc tcataaaact 101 tgaccaaatc tccttttcct ttttgtccat ctctttacca cttacatatt 151 ttcccataaa ataacgattc catcatatta attaaagcaa aaaataaaca 201 ATTAGTTGCC CCCCCCCCCC AAAAAAAAAT GGTCACAATA ACAATACTAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.000 -strand +5 : -6 CTAATTGTTTA AC RSP00301 Mean Expected Number 0.008 +strand -127 : -121 TGCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 3-isopropylmalate dehydrogenase, chloroplast |LOCUS: AT1G31180 |PROD: the same as GENE |complement(11142707..11144613) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.24 T - 0.28 C - 0.16 1 ttttgttgtt gttcggtttt tggtttatat gaacgcggcc aagtgaacgg 51 atggtggaca tgagagagtc caaaaagctg atagaactta aaattgaaat 101 taatgagaac ATTGAaccaa aatcaggtta acaaataacc agagataacc 151 ggtctctgta gtatactcaa atggttagtt tttgccgatg gtggtgccct 201 AAACTCGAAA AAAAGATGGC GGCGTTTTTG CAAACTAACA TCCGTCTGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.009 -strand +3 : -4 TTTAGGG AC RSP00683 Mean Expected Number 0.006 +strand -163 : -154 GCCAAGTGaA AC RSP01032 Mean Expected Number 0.007 +strand -84 : -75 CCAAAATcAG Totally 3 motifs of 3 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: inositol monophosphatase family protein |LOCUS: AT1G31190 |PROD: the same as GENE |11144753..11146911 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.17 T - 0.33 C - 0.24 1 ccggtatgat ctccagacgg atgttagttt gcaaaaacgc cgccatcttt 51 ttttcgagtt tagggcacca ccatcggcaa aaactaacca tttgagtata 101 ctacagagac cggttatctc tggttatttg ttaacctgat tttggttcaa 151 tgttctcatt aatttcaatt ttaagttcta tcagcttttt ggactctctc 201 ATGTCCACCA TCCGTTCACT TGGCCGCGTT CATATAAACC AAAAACCGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.007 -strand +24 : +15 GCCAAGTGaA AC RSP01032 Mean Expected Number 0.009 -strand -56 : -65 CCAAAATCAG Totally 2 motifs of 2 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G31330 |PROD: the same as GENE |complement(11214805..11215992) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.25 C - 0.33 1 aaaagataag tcgtgtgtag tccacatatc ttgaacatca aaatgacaaa 51 actattaaaa tccgcggcaa aatctcttat ccagtgacat gttacttatc 101 aaCCAATcac aacacgccac ctcatcaccc caagaccact tctcttatct 151 tcctctccct ccactaatcc cctcaagaat ctaaagctcc tcccataagt 201 CTTCTCTCCA CACTTCACCC AAAACTCCAG AACCCTAGAA TTCGAAATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.003 -strand -186 : -191 CACGAC AC RSP00132 Mean Expected Number 0.007 +strand -85 : -78 GCCACCTC AC RSP00166 Mean Expected Number 0.001 -strand -130 : -137 TTTGCCGC AC RSP00227 Mean Expected Number 0.002 -strand -50 : -58 AAGATAAGA AC RSP00253 Mean Expected Number 0.002 +strand -142 : -135 AATCCGCG AC RSP00454 Mean Expected Number 0.001 -strand -103 : -113 TAaGTAACATG AC RSP00847 Mean Expected Number 0.002 +strand -84 : -75 CCACCTCATC AC RSP00887 Mean Expected Number 0.002 +strand -26 : -18 AAGAATCTA AC RSP01343 Mean Expected Number 0.010 +strand -190 : -185 TCGTGT AC RSP01598 Mean Expected Number 0.007 -strand -153 : -160 TGTCATTT Totally 10 motifs of 10 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1227. Group RE: TCGTGT motif /AC: RSP01343//OS: Daucus carota /GENE: Dc3/RE: TCGTGT motif /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: proline-rich family protein |LOCUS: AT1G31750 |PROD: the same as GENE |complement(11370640..11372058) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.33 C - 0.18 1 ctgatggaga agaaacgtgt catgatcaga agaggaataa gaatgcgttg 51 ttaaaacgag caagcatcaa cgcgtccatt tcggtttaaa tcaatagcta 101 agagcctttt tcgctacaca taaccaaata tcgcacacat gtatgtgtct 151 aaacataaca tagtatatag ttcatttttc catatcttgt atctctctct 201 ATTCATATCA TCTTATTATC TCTCAAGTTC TTGATTTTAA TTAAAGATGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.009 -strand +35 : +28 ATCAAGAA AC RSP00864 Mean Expected Number 0.001 -strand -1 : -9 AGAGAGAGA AC RSP00914 Mean Expected Number 0.005 -strand +12 : +3 GATGATATGA AC RSP01035 Mean Expected Number 0.007 +strand -186 : -180 ACGTGTC Totally 4 motifs of 4 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ABC transporter family protein |LOCUS: AT1G31770 |PROD: the same as GENE |complement(11374874..11377775) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.32 C - 0.18 1 aaaaggaaag tgagagatag agaaagtggg aacccaccat agacgattga 51 tcggccaaca tagtaaagaa agcctttttt tttgtatgtc tctctctctt 101 cctttttctg ttcttacaac acagaggagt aattctaagt gtgtgtgaga 151 gggtgttttc catactacta tatattcatg tgctcacatg gtttcccttt 201 GAGGGAGATC AAGAAGAAAG TTACCAAAGC CACTTGCTTT TTAAGCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.007 -strand -6 : -14 GAAACCATG AC RSP00522 Mean Expected Number 0.009 +strand +30 : +36 CCACTTG AC RSP00613 Mean Expected Number 0.006 +strand +8 : +15 ATCAAGAA AC RSP00864 Mean Expected Number 0.001 -strand -102 : -110 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -104 : -112 AGAGAGAGA AC RSP00979 Mean Expected Number 0.006 +strand -41 : -32 CCATACtACT AC RSP01640 Mean Expected Number 0.006 +strand -117 : -108 gTATGTCTCT Totally 7 motifs of 6 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: acyl-CoA binding protein / ACBP |LOCUS: AT1G31812 |PROD: the same as GENE |complement(11410857..11412170) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.32 C - 0.19 1 aggaacatgt tcgatgagca aaaaaaagaa aaaacagaac atgttctttg 51 ttttacagtt gtacccatac tgatcagaat aagccaatca acggggtgtc 101 tgaatccacg tatacagtat ctatctctaa aaatatttat ttcctttaaa 151 gaaaatattt aatagttatg gcttatgggc ctgagaggtt tatcatgacg 201 CCCATATATA TCTCACGCGT TGTCCTCGTC TTCTCCGTCT TACACTGATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -61 : -46 TTTCCTTTAAAGaAAA AC RSP00080 Mean Expected Number 0.004 -strand -46 : -61 TTTtCTTTAAAGGAAA AC RSP00280 Mean Expected Number 0.005 +strand -96 : -87 TCCACGTAtA AC RSP00574 Mean Expected Number 0.008 +strand -126 : -119 CAGAATAA AC RSP01274 Mean Expected Number 0.004 +strand -96 : -87 TCCACGTATa AC RSP01499 Mean Expected Number 0.004 +strand +31 : +40 TTCtCCGTCT AC RSP01734 Mean Expected Number 0.010 +strand -96 : -90 TCCACGT Totally 7 motifs of 6 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: chloroplast 30S ribosomal protein S11, putative |LOCUS: AT1G31817 |PROD: the same as GENE |complement(11414730..11416418) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.36 C - 0.16 1 tatctttctg ctcgtttttt actttttgtt caaattcttt gttctctgtt 51 taagatcata agcacaagaa gatatgtgta aatgttgtat cattcagttt 101 ttcttttgaa atgaaaccca ttggtgatag cCCAATacgt ttatggaggc 151 ccatgagagc ccaataagta atacaaaatt catttgtaga tctaccgttt 201 ATGTACGATG TGATCGAGAT GCTCACAAAT GTTTGAAAGA AGAAAAAACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 -strand -174 : -185 AAAAAGTAAAAA AC RSP00501 Mean Expected Number 0.004 -strand -187 : -193 CGAGCAG AC RSP00943 Mean Expected Number 0.006 -strand -87 : -97 TCATTTCAaAA AC RSP01596 Mean Expected Number 0.006 +strand -97 : -87 TTtTGAAATGA Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G31940 |PROD: the same as GENE |complement(11470039..11471320) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.13 T - 0.25 C - 0.16 1 tcaacattta taaaaataac gccagtagtt tattacagtt atatgattct 51 taatcatcaa ttaaacacaa aatacattca ttagaataat gataattaga 101 ttttccaaat ccaagaaaag ctgaaagagg acaacaacaa aaaaaaagta 151 aacgaaacag agtgaaggca taagtaagag aatctgctta agctataagc 201 AAATCAAAAA GCATTTATCA TCCATTCATT CACCTGGAGA TATAAAGCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00778 Mean Expected Number 0.003 -strand +32 : +23 TGAATGAATG Totally 1 motifs of 1 different REs have been found Description of REs found 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: phosphoribulokinase (PRK) / phosphopentokinase |LOCUS: AT1G32060 |PROD: the same as GENE |11532530..11534619 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.03 T - 0.31 C - 0.29 1 atcatcacac aaccacatta aaccaaaaca aaacaaaata aaactccttt 51 tcttctctgc aaattgccat ctgtttttcc tatagaccca ttgtcctcct 101 ctcatttctc tctttcccca tttaatctta ttttcaaaaa aaaaaaaaat 151 cacatctcta tatcaccaca caaaaaacca taaaatcaaa aatcgttacc 201 CACATTTCTT TCATTCTATC CTAAATCCTC ATCACTCAAC CTGAGCTCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01091 Mean Expected Number 0.010 +strand -21 : -11 ATAaAATCAAA AC RSP01091 Mean Expected Number 0.004 -strand +19 : +9 ATAGAATgAAA Totally 2 motifs of 1 different REs have been found Description of REs found 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G32070 |PROD: the same as GENE |complement(11534664..11536318) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.26 C - 0.19 1 ttctgtcaaa cagaaaaatc tgtcttcaat ttcatcttgt atgtgataaa 51 aaaaaattat aagaagtccc cagtaacaat cctttacaaa caaattgatg 101 aattcaacaa aaataaggga gagggcaaaa gcgtaaataa caaaagtcga 151 tgacgagggc caaagcccca atggaaggtg ttaagctaaa ctctcttctt 201 GTCTGATATT TCTTCTACTC TCAAGTCTCA ACCACATAAC CAATAAAAAA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: membrane protein, putative |LOCUS: AT1G32080 |PROD: the same as GENE |complement(11537328..11539780) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.27 C - 0.22 1 ctctaataaa aaagatgtat caaaaactat attaatatta aattaaagta 51 gacaaaagac ctttcttaac ggaaaaacct aacccggaaa aagacaaaac 101 tggatcctct tgtcgataga actttctctc ttgtccatac aaatatcgta 151 atccaatttc aatcacaaac atcattaacg aagatggaga agactatgat 201 GTGCCGTCTC TTAGAATCAC ATCCACGTCG TCGTCTCCAT ACCCATGGCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00941 Mean Expected Number 0.009 +strand -44 : -37 TTTCAATC AC RSP00986 Mean Expected Number 0.001 +strand +23 : +30 CCACGTCG AC RSP01275 Mean Expected Number 0.004 +strand +22 : +31 TCCACGTCgT AC RSP01594 Mean Expected Number 0.009 -strand -37 : -44 GATTGAAA AC RSP01734 Mean Expected Number 0.009 +strand +22 : +28 TCCACGT Totally 5 motifs of 5 different REs have been found Description of REs found 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G32310 |PROD: the same as GENE |11653544..11654771 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.36 C - 0.18 1 gagaaaagtg aaaacagaac attttacaga acaacgtctt ttgttcatta 51 tgacaagctt aacaagtttt atggtcggtc acacgggcct ttgttgttgg 101 gctttagccg gtttatttgg tTCAATtcgg tttacatggt tagtcctcga 151 ataaaataat ttcggtttaa gatttgttac ggctcctccg tcaatgtatc 201 GTCGTTGATC CCAAATTTCT TCTGAACAAT TTCGATTTTG AATTCGCGCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01480 Mean Expected Number 0.009 -strand -43 : -50 TATTTTAT AC RSP01601 Mean Expected Number 0.004 -strand -188 : -195 TTTCACTT Totally 2 motifs of 2 different REs have been found Description of REs found 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G32410 |PROD: the same as GENE |11693812..11695546 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +566 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.24 C - 0.22 1 gattccacac ttgccaactc acacctgctg tggttctgca acagacatga 51 ctggaccgga ctaaataagg tcaaaccgta tcgggtttgg tacacacgtg 101 gccgatcatc atcaaagggc ttaCCAATat tacgatggac tcgaccacag 151 ctgatagaag ttccgatatt acaaaaacag aaagacagaa gggtttacct 201 ATGATTAATG TCTGAAAAAT TTGATATTTG AAGCGAATCA ACAACAACAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.001 +strand -107 : -99 ACACGTGGC AC RSP00153 Mean Expected Number 0.003 +strand -107 : -98 aCACGTGGCC AC RSP00175 Mean Expected Number 0.002 +strand -106 : -99 CACGTGGC AC RSP00204 Mean Expected Number 0.003 +strand -108 : -99 cACACGTGGC AC RSP00357 Mean Expected Number 0.005 +strand -186 : -179 CAACTCAC AC RSP01034 Mean Expected Number 0.008 +strand -105 : -99 ACGTGGC AC RSP01152 Mean Expected Number 0.003 +strand -108 : -99 CACACGTGgC AC RSP01255 Mean Expected Number 0.003 +strand -107 : -100 ACACGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycine cleavage system H protein, mitochondrial |LOCUS: AT1G32470 |PROD: the same as GENE |complement(11739284..11740308) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.40 C - 0.19 1 tttgtgggcc gaaataaccc cgtttaagtt tttttttttt ttggtttctt 51 tattcatttt cattttactt tttgttcaaa ttcaaaacct tctgactggt 101 cgagaaagtt tgggtcacac ttttttcgac gacaacatta agatgaggcc 151 tttgttttct gccatacatc taaagataga acacaaacgt caataaaagc 201 AATTAAGATC TCTCTTTACT GTTTTCCCAC TTTTCCTTTG AGAAAACTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00979 Mean Expected Number 0.009 +strand -39 : -30 CCATACAtCT Totally 1 motifs of 1 different REs have been found Description of REs found 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc-binding family protein |LOCUS: AT1G32700 |PROD: the same as GENE |11827413..11829739 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.30 C - 0.18 1 ataaagaaaa ttaaagtttt ggagattaaa cattactata aacaaataat 51 aaatgtgaaa aggagaagaa gaaagatgga aagtgggaag gatgggttcg 101 gttcATTGAa ccctccttac caaaagcaag gtctctctca gcttcggagt 151 ctaggttcgg ttttaggttc ggtatagtcg acttttgtgc ggataagaac 201 GACTCTTCGC TCTTCTTTTT ACACGAACAC TTCTCTCTCT CTCTCCTCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.001 +strand +37 : +47 cTCTCTCTCCT AC RSP00864 Mean Expected Number 0.001 -strand +44 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +42 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +40 : +32 AGAGAGAGA AC RSP00865 Mean Expected Number 0.000 -strand +46 : +38 GGAGAGAGA Totally 5 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G32740 |PROD: the same as GENE |11844857..11846482 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +6 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.21 C - 0.20 1 gagagagaga gagagaatcc taaagaaaaa gccaaagcat attaagaaga 51 agagaaccaa aacgaacaaa cccaacccta aagaaacact attattaaac 101 ctatatttat agacatttaa agagagagtg aaaggtgcag aagaaaacag 151 agacagagtt caaatacctt aagatcacat catcatatag cttttgtatc 201 ATTAAAATGG CAGTTCAAGC TCAACACCAT TCCTCCAATC TCCTCTTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand -199 : -191 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -197 : -189 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -195 : -187 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -193 : -185 AGAGAGAGA AC RSP00915 Mean Expected Number 0.004 -strand -17 : -26 GATGATGTGA AC RSP00916 Mean Expected Number 0.002 -strand -17 : -26 GATGATGTGA AC RSP01283 Mean Expected Number 0.000 +strand -200 : -184 GAGAGAGAGAGAGAGAA AC RSP01296 Mean Expected Number 0.001 -strand -89 : -97 CTATAAATA AC RSP01301 Mean Expected Number 0.007 -strand -89 : -98 CTATAAATAt Totally 9 motifs of 6 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PRPL11 |LOCUS: AT1G32990 |PROD: ribosomal protein L11 family protein |11955768..11957264 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.31 C - 0.22 1 ttgacaacaa caaaaaacaa aaatctcttc cttggtccat aattccatat 51 aatgtactcg ttttcatgca acatttgatc ctagacgact actacagaca 101 gtaaatgggc ttgatctgga atcttacgcc tatttattta ggcccattaa 151 gcccataaag tgggagaact aaaaaagtgg ataggatttg tgaactcgct 201 CTTTAGCTTT CACTAACCTT CTTCCTTCAC AGTGAATCAA TGGCGTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.009 -strand -18 : -24 TATCCAC AC RSP00122 Mean Expected Number 0.002 -strand -35 : -41 CTCCCAC AC RSP00778 Mean Expected Number 0.003 +strand +33 : +42 TGAATCAATG Totally 3 motifs of 3 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G33040 |PROD: the same as GENE |11966479..11967823 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.32 C - 0.16 1 ttagactaat agtttcttct cttttttttg accattctgg catggagacg 51 tacgtaaatt cgccaagtaa actaaagaac aaatcaaagt ttttgagact 101 gaggcCCAAT gggcttttaa ttgacgacca ttgggtttgt ttatagtgaa 151 ccgcggagca gaggatcatt tatctacttt atttgtttca tctgtcactc 201 ACTGTTAAGG AAGGTCTTGC TGCGCTAAGA AAGAAAAGAA GAAGAAAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 -strand -174 : -183 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.003 +strand +28 : +36 AGAAAGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L9 (RPL90A/C) |LOCUS: AT1G33140 |PROD: the same as GENE |12023255..12024747 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.36 C - 0.19 1 cgccgtcatt tttcttgaga aggagagaga gcaccacttc cgtcattcca 51 gcccaatatt tttaacgggc catgggctta ttgtaaataa tgtatttttc 101 tcatttttgg ttttctttat gggcacgatt ttagtgggct gaattttgat 151 aaaggcccac atatgaaaga tatttagggt tttttctctt gatacctttt 201 AAAACGCCGT CGAGAAATCT CCCTCTAGGG TTTCTTTGAT CAAACCAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00135 Mean Expected Number 0.002 +strand -146 : -135 AATATTTTTAaC AC RSP00279 Mean Expected Number 0.003 +strand -27 : -19 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand -19 : -27 AAACCCTAA AC RSP00653 Mean Expected Number 0.001 -strand -170 : -180 cTCTCTCTCCT AC RSP00865 Mean Expected Number 0.000 +strand -179 : -171 GGAGAGAGA AC RSP01015 Mean Expected Number 0.003 +strand -41 : -32 CAtATGAAAG AC RSP01167 Mean Expected Number 0.003 -strand -25 : -33 TAAATATCT AC RSP01303 Mean Expected Number 0.005 -strand -18 : -27 aAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G33265 |PROD: the same as GENE |12066575..12068391 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.26 C - 0.19 1 ggttaggaac caacaaaccg aaattactat aaatttatcc aaaattaaat 51 cgagataacc aaacaattgt actgaaatga accgaagaat agatgcgtag 101 ttATTGAaaa agttgataaa accaaaccaa atcaaaccga atttgggaat 151 agaaccgaac tttgtactct ataacccaat ccaaaccgaa tcggaccgat 201 GAACTAAATT TTGTTTTGTC ATATTTGATC CATTTCTCTT CACTGACGAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G33800 |PROD: the same as GENE |12261399..12262697 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.33 C - 0.22 1 acatcttcca attaccatga atataaaata ttactataca atatgaaaaa 51 aaacaattag ttagtatatg tgtattcatc accaacttct gttgtattgg 101 aagaacagca accttagtag ctttcatgtc ctcctcaact tccTCAATga 151 ttaagccata acctctctat attatataca cttctcatca ttatcaaaac 201 ATCTTCCTCA TTCATAGATC CAAAAACCCA AATCGAAAAA TCGATTCTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00534 Mean Expected Number 0.003 -strand -7 : -19 ATAATGATGAgAA Totally 1 motifs of 1 different REs have been found Description of REs found 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT1G33990 |PROD: the same as GENE |12355548..12358237 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +341 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.17 T - 0.29 C - 0.12 1 ctatatactc tcttggtcac ttgtaacgaa gtaacaaaat gaaatacatg 51 tcacatgtga tatatttata cacagactac aatgaaatca agtatgttga 101 ctaagaagag aagaaaatga agtttgttga ctaaagaaag gtcaaaattt 151 ttagaaatta tcatcaaatc ataaagatag taaaataatg ttaacagtat 201 GAAGTGTGAA CTCATATCTT CGAAGAGATT GAGACAGAGT TTAGAAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.005 +strand -104 : -95 TTGACTAAGA AC RSP00949 Mean Expected Number 0.004 -strand -68 : -75 TAGTCAAC AC RSP00949 Mean Expected Number 0.004 -strand -98 : -105 TAGTCAAC AC RSP01136 Mean Expected Number 0.008 +strand -152 : -146 TGTCACA AC RSP01469 Mean Expected Number 0.005 +strand -150 : -141 TCACATGTGa AC RSP01469 Mean Expected Number 0.009 -strand -141 : -150 TCACATGTGa AC RSP01473 Mean Expected Number 0.000 -strand -73 : -85 AACAAACTTCATT AC RSP01602 Mean Expected Number 0.007 -strand +34 : +27 TCTCAATC Totally 8 motifs of 6 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1342. Group RE: AACA motif /AC: RSP01473//OS: Oryza sativa /GENE: GluA-3/RE: AACA motif /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 40S ribosomal protein S18 (RPS18B) |LOCUS: AT1G34030 |PROD: the same as GENE |complement(12370055..12371530) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.28 C - 0.18 1 ccatacattt tatctttcta gattgttaat caaatgtcct gtgtccatgt 51 tcaagtgata atgtgatatc cctaagtgta tcggtttaat tggacaagaa 101 tgggcttaaa ccaaataagg gtataatagt cttttcagaa aatcagtaat 151 ttcgatagcc aaaatgagct atataagccg aacaaaaaaa aaccctagct 201 CACGCTGTTG AATCACTGAA GAGAGAAAGC TTGAAGACGG CGAGAGCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 +strand -90 : -81 CCAAATAAGG AC RSP00333 Mean Expected Number 0.001 +strand -200 : -192 CCATACATT AC RSP00628 Mean Expected Number 0.007 -strand -174 : -181 AACAATCT AC RSP01033 Mean Expected Number 0.009 -strand -81 : -90 CCTTATTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G34350 |PROD: the same as GENE |12534432..12536073 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.34 C - 0.13 1 catttggttt gagtataagt ttagatgttc ctggaaaatc atattactct 51 gaataatcca aaatattagt atgttatctc agtggcatta ccgttaaaat 101 atgaaactat aagggtattc tgggaagttg gtgattacat ttttttcttt 151 tcctggcaac ttcgagagct tttaagcgca gaagaaactc gttaaaaatc 201 TTGGCGAGAA AAGTTGAGAA CTGGAATCGA AGAAGCGATA GGGTTTTGGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.009 -strand -68 : -77 CACCaACTTC Totally 1 motifs of 1 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger (C2H2 type) family protein |LOCUS: AT1G34370 |PROD: the same as GENE |12550424..12552677 |SUPPORT | 2 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +556 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.32 C - 0.23 1 aggttgactt actctaatca cctcgtaatc aattattttt tctcataaat 51 caacggctct aatgcatcgt taccatgttc aatgcgataa tatggttttg 101 caccgtcaga tctgATTGAt accgatcttt atataatttc aacggttgag 151 attaatgggt tgactttaca tagggtagat cagaaagtgg agagcacccc 201 AAAGCTAATA AACATGAGCC CCGCTCAGGC GCTGCTTCCT CCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.007 +strand -132 : -124 GTTACCATG AC RSP00495 Mean Expected Number 0.008 -strand -31 : -38 TGTAAAGT AC RSP00864 Mean Expected Number 0.002 -strand +51 : +43 AGAGAGAGA AC RSP00918 Mean Expected Number 0.004 +strand -42 : -33 GTTGACTTTA Totally 4 motifs of 4 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G34570 |PROD: the same as GENE |complement(12654918..12656464) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.28 C - 0.22 1 ttgacccaac caaaaaacaa aaacaaaaaa atctgctaag tgggctgaac 51 ttgggcctca taactcacta aacgacaaaa caaaaattag gaattgtctt 101 tttcgaagaa aaaaatcgga aacctgtgta tgtgaccttt gtggttgtgg 151 gcatcgacga tcgtcatctt ccttctggtt ctttctgttc tctcaaaacc 201 ATTTGGTCAA ACCATTATCT CGAAGTCGTC TCTGTAGAAC TAATGGAGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01639 Mean Expected Number 0.009 +strand -109 : -100 AATTGTCTTT Totally 1 motifs of 1 different REs have been found Description of REs found 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G34640 |PROD: the same as GENE |complement(12687208..12688488) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.31 C - 0.21 1 aataaagata aaactgaaca aacacaaaaa cttggatcca aaaatacggt 51 tgggacatta ccacatttat ggcggcattc aattcaattg attgccacgc 101 atttttccaa aagaatatac cctatataaa aaaatccatt aaatattatc 151 tttaacacat aaatgaaatc tttctcctac atcctacata atctgtgaat 201 CTTCTTTCCA TGTTTACACT GTTATAAAGC AACTTCAACT AATCCCGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.004 +strand -154 : -149 CGGTTG AC RSP00438 Mean Expected Number 0.001 +strand -130 : -125 GGCGGC AC RSP00483 Mean Expected Number 0.009 -strand -125 : -129 GCCGC AC RSP00807 Mean Expected Number 0.001 -strand -125 : -130 GCCGCC AC RSP00889 Mean Expected Number 0.006 +strand -106 : -100 CCACGCA AC RSP01076 Mean Expected Number 0.001 -strand -98 : -107 aATGCGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GRF4 |LOCUS: AT1G35160 |PROD: 14-3-3 protein GF14 phi (GRF4) |12867159..12868771 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.08 T - 0.25 C - 0.25 1 ttttattttt ttaatctcca gatactcatt aaaaaactgc tgttggagat 51 gacctaaaaa ccgacccaaa aagtatcaga aaattcccgt gtacaaaatt 101 taatccaacg gtcctccttc catctccttt cGCAATcgtc gctccccact 151 caaacaaaaa ccaaaaaaaa caaaactatc ttttaaaccc caacaaaaaa 201 AAAATTGAAA TTCGAAAACA GAACAAAAAA AAAAATCTCT CTCAATCTCT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: Bet v I allergen family protein |LOCUS: AT1G35260 |PROD: the same as GENE |complement(12936827..12937765) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.29 C - 0.17 1 taaaacaata aattacaaat taaaatataa aataattacc aatcaaaaac 51 taattttaaa aacgtgatat tattagtagg tcagttgttg aaagaaaaag 101 tagctgagtc ATTGAgtcac tgatgacgcg attaaccaaa aagtaatgga 151 tattttctca aaataaaatg aaaccactcc tcatttctat tctttattcc 201 ATCAAAGGAA CTACGAACTC AAAGCCAAGG TAATCACTCA TTCTCATCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.004 -strand -163 : -176 tAATTATTTTATAT AC RSP00190 Mean Expected Number 0.008 +strand -96 : -90 TGAGTCA AC RSP00190 Mean Expected Number 0.008 +strand -88 : -82 TGAGTCA AC RSP00778 Mean Expected Number 0.005 -strand -82 : -91 TGACTCAATG AC RSP00871 Mean Expected Number 0.001 +strand -98 : -89 GcTGAGTCAT AC RSP00916 Mean Expected Number 0.001 +strand -79 : -70 GATGACGCGA AC RSP01699 Mean Expected Number 0.008 +strand -139 : -133 ACGTGAT Totally 7 motifs of 6 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ANNAT1 |LOCUS: AT1G35720 |PROD: annexin 1 (ANN1) |13226481..13228407 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.30 C - 0.17 1 agattacgat agttttttat gaaatcatga tttgtgcata aagttaagca 51 aatgctaaat aattcataaa gtgtaagaaa cacgtggcag aagaattaat 101 aattcgtttg ggatattttt ggtatatacg gacaggccac gtcgtgtcct 151 aaacctctta gcctttccct ttataagtca atcttgtgtc ggcttcgact 201 CCCAACATAC ACAAAACACT AAAAGTAGAA GAAAAATGGC GACTCTTAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -121 : -113 ACACGTGGC AC RSP00153 Mean Expected Number 0.001 -strand -57 : -66 CgACGTGGCC AC RSP00175 Mean Expected Number 0.001 +strand -120 : -113 CACGTGGC AC RSP00176 Mean Expected Number 0.001 -strand +48 : +38 TAAGAGtCGCC AC RSP00204 Mean Expected Number 0.001 +strand -122 : -113 aACACGTGGC AC RSP00524 Mean Expected Number 0.009 +strand -121 : -115 ACACGTG AC RSP00819 Mean Expected Number 0.002 +strand -65 : -56 GCCACGTCgT AC RSP00819 Mean Expected Number 0.002 -strand -113 : -122 GCCACGTgTT AC RSP00821 Mean Expected Number 0.001 +strand -65 : -56 GCCACGTCgT AC RSP00986 Mean Expected Number 0.001 +strand -64 : -57 CCACGTCG AC RSP01034 Mean Expected Number 0.005 +strand -119 : -113 ACGTGGC AC RSP01034 Mean Expected Number 0.004 -strand -59 : -65 ACGTGGC AC RSP01205 Mean Expected Number 0.005 +strand -33 : -24 CCTTTATAAG AC RSP01255 Mean Expected Number 0.002 +strand -121 : -114 ACACGTGG Totally 14 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: WD-40 repeat family protein |LOCUS: AT1G36070 |PROD: the same as GENE |complement(13468123..13471888) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +290 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.38 C - 0.17 1 tgggctttca tgtttgtaaa ctcaatgtac ttatagttga aacaaaaaag 51 gaatttatta taagaaaaaa aaaaagatgt tgttgtgtcc gttcaactaa 101 taaaagccca agtacttttt ttttttgttg cgttggttat ttatacattt 151 gcaaaaaagg tcccatattt atttcctttt tcatttctta tcaaactttt 201 GACAACGATC ATCCAGGTCC CACTCTGCTT CTTAACCATT CTTTACCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00635 Mean Expected Number 0.001 +strand -42 : -35 GGTCCCAT Totally 1 motifs of 1 different REs have been found Description of REs found 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G36320 |PROD: the same as GENE |13673029..13675310 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.36 C - 0.20 1 tgtacatttt gttcggttta tttcggttcg gttctttttg ttgtcaaggt 51 tcttgagaaa gacgagttgc taaaaccttg ttatgttcta gttgggccgt 101 gttaatgggc ctactATTGA aaagcccttg aatatgaaga aaaattacaa 151 aagtgccatt agttcttcat ctccctcaca actcagaaga agaagaattt 201 CTCCGGCTAA AACCCTTTCT TCTATCATCT ATGCGAAAGC TTCATCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.006 +strand +34 : +40 CGAAAGC Totally 1 motifs of 1 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G36380 |PROD: the same as GENE |13702026..13702844 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.19 1 aatttgttga gaatgagttc tctcacactc gtaaaaaaca tatttaactg 51 tttacagcgg tgatgtagaa atgtagacgt gagagctaga aacatccaaa 101 agcccagtgg gctattataa gcccatacat gatatatcat ttttttaaca 151 tcatcactcg atttgtttaa agacaaaacc aaaacctgat ctcaaaaact 201 CTTTTTAATT TCAGTTTGGT CTTTTCGTAT CTTCTTCTTC CACGTAATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.003 -strand -132 : -141 TCTACaTCAC AC RSP00559 Mean Expected Number 0.005 +strand +4 : +14 TtTAATTTCAG AC RSP00716 Mean Expected Number 0.002 +strand -27 : -19 CAAAACCAA AC RSP00756 Mean Expected Number 0.004 +strand -179 : -172 CTCACACT AC RSP01016 Mean Expected Number 0.009 +strand -113 : -106 AGAAACAT AC RSP01275 Mean Expected Number 0.004 +strand +39 : +48 TCCACGTaAT AC RSP01734 Mean Expected Number 0.009 +strand +39 : +45 TCCACGT Totally 7 motifs of 7 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: co-chaperone grpE family protein |LOCUS: AT1G36390 |PROD: the same as GENE |complement(13702613..13704783) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.41 C - 0.16 1 tgtgtattct ttaacaaact tatgtttttt tatttaattt tttgtatttt 51 tctttaggat ttgttctaaa aaaaaacttc taaaactatc aatatacatg 101 ttctaattaa aaaatatata tatttaaaag tcaccATTGG aaatgtcctt 151 actgtcctta cagatgagta tttgagatta ctcttgcctg tgccctgaga 201 ATTTTTTCCT TTGGGACTCA CTGAGATTAC TACTACCAAA TCCAACAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.001 +strand -71 : -61 GTcACCATTGG Totally 1 motifs of 1 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: VIP1 |LOCUS: AT1G43700 |PROD: VirE2-interacting protein (VIP1) |16486671..16488681 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.37 C - 0.16 1 ttacataatt ccttcaactt ttgatccttg tagacacatg ttacaatgta 51 caaaatataa tctgttgaag taaaccgaaa cattattcaa tgtgagaacc 101 ggataagatt attagtatta tttatttata tatATTGTtt ttttaaaagt 151 aaataagttg gtaaatatcg agaatatagg ttttcagacc aaacacatca 201 CTTTGGTCCT ACTTAGTACT TACCTGCCCC TCTCGACAAA ATTTCTTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01469 Mean Expected Number 0.007 -strand -158 : -167 TaACATGTGT Totally 1 motifs of 1 different REs have been found Description of REs found 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G43860 |PROD: the same as GENE |complement(16624508..16626909) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.33 C - 0.14 1 aagaacaaat ccgaaagtac atgtagtttt atcgagatta aaattgttta 51 tggtgatttt tcaagtgact aaaagtttag gatggaatgt tgaaatttta 101 actagtatag ggctgaaaat tcaggcaacc ctttaagttt tagCCAATaa 151 ctttttattt tcttcacatt tagccacgaa cttaataaac aagtgaagac 201 CTATCACATT TTGCAGTTTC AACAAATAAA TATCCCAAAA TTTAGTGGCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.002 -strand -19 : -28 AGTtCGTGGC AC RSP00397 Mean Expected Number 0.000 +strand +44 : +51 AGTGGCGG Totally 2 motifs of 2 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ChaC-like family protein |LOCUS: AT1G44790 |PROD: the same as GENE |complement(16914594..16916104) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.39 C - 0.16 1 gttttatatt tgttttgtaa cttgttaaaa caagaaacat atattaattg 51 ggtcacttgt ctttgtcgta tcctaatgat ggatctcact ttctctcacc 101 atggtcaaat ttataatctc aaaagtttag ggtcaaaatt tagatgctaa 151 acaaaataga gggatttgtt ctataactcg ttaaagtaat gacacgtgag 201 AAACATGTGG TAATTGGTTC ATTTATCCTT CTTTCTTTCT TCTCCAATCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 -strand -1 : -10 CtCACGTGTC AC RSP00056 Mean Expected Number 0.002 +strand -149 : -140 GtCACTTGTC AC RSP00383 Mean Expected Number 0.010 +strand -98 : -92 GGTCAAA AC RSP00383 Mean Expected Number 0.010 +strand -70 : -64 GGTCAAA AC RSP00444 Mean Expected Number 0.000 -strand +41 : +28 AAGAAAGAAAGAAg AC RSP00524 Mean Expected Number 0.005 +strand -9 : -3 ACACGTG AC RSP00860 Mean Expected Number 0.008 -strand +40 : +32 AGAAAGAAA AC RSP01016 Mean Expected Number 0.006 +strand -168 : -161 AGAAACAT AC RSP01016 Mean Expected Number 0.006 +strand -2 : +6 AGAAACAT AC RSP01035 Mean Expected Number 0.005 -strand -4 : -10 ACGTGTC AC RSP01621 Mean Expected Number 0.007 -strand -72 : -81 TAaACTTTTG Totally 11 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G45688 |PROD: the same as GENE |17193840..17195598 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.32 C - 0.18 1 ttgtccaatt tttcagaaaa taatttttaa gttgagaaat ttactaaaaa 51 tataaaaact actaaatata ttaatttaag actaatttta aagacaataa 101 taattataaa ATTGAttaat gacgtacgcg tttgtgtaaa tttaccaaac 151 catacccttc aaaaacccaa ccacaaaatt tgacaaactc atcgtttaac 201 AAACATTTCA CTTTCCTCTT CTCCCACCAT TTTCAGAGCT CAGAGAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.006 +strand +21 : +27 CTCCCAC Totally 1 motifs of 1 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RAP2.1 |LOCUS: AT1G46768 |PROD: AP2 domain-containing protein RAP2.1 (RAP2.1) |complement(17268141..17268976) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.32 C - 0.19 1 tttgtaagcc atctgatctc gatgaatctt cagtattcaa tttcagtcgg 51 tctcctaacc atccatgaca aattcagtga taatatagta aatagataac 101 aagtgagacg tacgaggtta cttggctatt tctacaaaaC CAATatttat 151 gtcggccata gttctatatt aaatattgtc accatactta ataaacttcc 201 ATTGCGCCCC AAAAGTTTGT CTTTTATCAA TGGAAAGAGA ACAAGAAGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.002 +strand -66 : -58 CAAAACCAA AC RSP00857 Mean Expected Number 0.006 +strand -192 : -183 CCATCTGAtC Totally 2 motifs of 2 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MFP1 attachment factor, putative |LOCUS: AT1G47200 |PROD: the same as GENE |complement(17300471..17301257) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.37 C - 0.15 1 tattaattgt attttatgta attaatttaa aataaaaccg taattaattc 51 ataaaaagat ttgaacgtaa gtttaagatt ataactgaaa tatttatatt 101 gactatagtt ttctccacca cacaaagttt aaatttcaaa tacttcctga 151 attttcggtt atttaattat ttataataac accgaaccaa accaatcaat 201 GTCTAAACTC TAAACTCTAA AGACTTTGTC ATTTCGTGAA CCGTCGTCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00838 Mean Expected Number 0.003 +strand +41 : +46 CCGTCG AC RSP01598 Mean Expected Number 0.010 +strand +27 : +34 TGTCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CYCA3;2 |LOCUS: AT1G47210 |PROD: cyclin family protein |17303391..17305306 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.28 C - 0.31 1 acattttcag gcaaaatctg aaaacaaaaa aacataaatc acccgcccaa 51 acaaatttca gagaattttc gcacctccaa aattttttag ttgactccca 101 aaaaactcaa actccaaaaa aatcacagag agcgccACAA Tcagaaaaaa 151 tggcgctttt gctcttccct ttttcttccc cttctcacct tctcttcttc 201 CACTCATCCG ATCTCTCAAT CCTCTCAAAT CTCAAACTCT CTCTTCCCAT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G47290 |PROD: the same as GENE |17338294..17341713 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +267 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.37 C - 0.18 1 ttaccaatca gaccgacata aaaactttgt aagtaacata catatttata 51 aatataagta ttctttcagc taaaattgca tttataaatt ttaataaagt 101 ttgctttttg ttggcagaaa attaaacgaa taaattatGC AATtaattca 151 gatttcaaaa aataaaataa acaccacctc gatttcatct gaaatctacc 201 AGTTCCTTTT TTTTTGTTCT CCGAACGTTC TCTCCTCTCT GTCTATCATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.010 -strand -117 : -124 TAAATGCA AC RSP00698 Mean Expected Number 0.007 -strand -51 : -61 TGAATTAATtG AC RSP00850 Mean Expected Number 0.005 -strand -86 : -91 GCCAAC AC RSP01444 Mean Expected Number 0.000 +strand +30 : +44 CTCTCCTCTCtGTCT AC RSP01509 Mean Expected Number 0.001 +strand -198 : -190 ACCAATCAG Totally 5 motifs of 5 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 1317. Group RE: RPS-1 /AC: RSP01444//OS: Oryza sativa /GENE: RPBF (OsDof3)/RE: RPS-1 /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G47310 |PROD: the same as GENE |17345354..17347242 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.20 T - 0.42 C - 0.14 1 cgtttgtggt ttgaagtatt atgttttgtt ttattactat gtttagtttc 51 acttttttag agccaatttc cgaggaaatt ttgttttctg tcggctttga 101 ctctggagac ttttatgtcg tccgctggct ttaatttccc ttatttgggt 151 tttgtatttc actttggtat catttcaaga tcaataaact aatagtttga 201 GTAAAAAAAA AAATGGTATA GAGAGCCCAG GCAGGCTCAT GTCATGTGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 -strand -53 : -62 CCAAATAAGG Totally 1 motifs of 1 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G47420 |PROD: the same as GENE |complement(17397958..17399693) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.34 C - 0.20 1 gtcattatgc tattatgcaa ttttagcaat cggaacctta aggaaaaaaa 51 ccgacaagcg aaccgttctg tatgtatttc ggttattttc agccagccct 101 atttatttgg ttaagcttag attaaaaagt ttcggtttgg tTCAATttga 151 tatggtttgg aggtcaacaa caaaatcaac gaactgaata aagcgatcgc 201 GTTGGTTCTC TTCTTCAAAA CAAGCTCTCT CTGTCCCTCT CTGTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.008 +strand -97 : -87 TATTTGgTTAA AC RSP01640 Mean Expected Number 0.008 +strand +39 : +48 CTcTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G47750 |PROD: the same as GENE |complement(17571217..17572599) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.29 C - 0.25 1 tttcgtatct agatcaataa agtccaactt tcttctcaag ctgtttgcga 51 aaaatagatc aaaccaattt tatacatttt ccacggccgc attaattaaa 101 ccggacaatt cgggaatggc acgcaaaCCA ATtaatcaaa ctcgattccg 151 gttatcttca attctccttc ttcttcatct tcgcgtccgt gaagaacaac 201 AATTGAAAAA GCTCCATCTC CTCCAATGGC TACGAAAGCT CCAGAGAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.002 -strand +33 : +23 GTAgCCATTGG Totally 1 motifs of 1 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dolichol-phosphate mannosyltransferase-related |LOCUS: AT1G48140 |PROD: the same as GENE |17785711..17787880 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1360 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.25 C - 0.20 1 taaaaccgaa cttaaaagtg acaaaagggg aatatcgcat caaaccgaat 51 gaaaccgata tgaaaccgca tcaaaccgat atagcgtgaa ccaaaatgtg 101 gattaatgac atttagaccg gaggaacata agtggggact atacggcatc 151 gttttagtgt ataagtgaat tcgcatattc acgagttccc cgtattcacc 201 GGTTGTTATA TCGTCGATTC ATCGTCGTCG ACGGCGAGTA CTTGTGACCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.005 -strand -173 : -183 CCTTTTGTCaC AC RSP01475 Mean Expected Number 0.002 +strand -110 : -102 CCAAAATGT AC RSP01499 Mean Expected Number 0.003 +strand -15 : -6 TTCCCCGTaT Totally 3 motifs of 3 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: signal recognition particle 19 kDa protein |LOCUS: AT1G48160 |PROD: the same as GENE |complement(17790214..17792693) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +738 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.26 C - 0.20 1 aacaaaaaaa aacatcaatt taaacagaaa ccctaaaaat tgctgcttta 51 gttagaatca aggtttttac tgagctcacc ggtcgtgttg aagcggctgc 101 gtacaaactc ccaaatttgg cggaATTGCa accgacccat acgtaaatct 151 gtagttcgat taagtccaat tttagttccg acgaagctca aagacttgag 201 AATTAGGTTA AAAGGACCAA GCTAAGTTTA TTGGCGGGAA CCTGTTTCGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -165 : -173 TTAGGGTTT AC RSP00299 Mean Expected Number 0.000 -strand +41 : +30 gTTCCCGCCAAT AC RSP00369 Mean Expected Number 0.002 +strand -173 : -165 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand -174 : -165 gAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 288. Group TF: E2F /AC: RSP00299//OS: Nicotiana benthamiana /GENE: PCNA/RE: E2F-2 /TF: E2F 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G48170 |PROD: the same as GENE |17792455..17793762 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.24 T - 0.23 C - 0.18 1 agtgaaattg ctcggatcag agatgctcgt atcgccggag aagagcaacg 51 acggagaaag aggaatttcg caattgagat ttataccatc taaaaacttg 101 agccggtcta aaccgtattt aaccgtacca aatcagattt aaccggagat 151 gaaaaagtga aattgatttt cataagaaga agaagagcca aagaggacct 201 GACTTTTCTC GGACTTGGGA GACAATGGAG ACTGAATACG ACCAAGTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.003 -strand -34 : -45 ATCAaTTTCACT AC RSP00842 Mean Expected Number 0.001 +strand -190 : -183 CTCGGATC AC RSP01020 Mean Expected Number 0.009 -strand -28 : -34 ATGAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G48440 |PROD: the same as GENE |17910669..17912191 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.22 T - 0.25 C - 0.15 1 agaagagagt gactagtttc tgtatttgtt cttgaaagct aaccgttaaa 51 tcgaaataaa ccgataatca gcacaataaa accggtatat ggagatattg 101 ggccggaggt gagagcccat taagtaagaa aataacttaa ttagtaagat 151 aaagaaaaaa tggttaagca taggcacgtg ttccacgcac acggttcgtc 201 TATTATTATT CTTCGTCTAC TTCACACGGA ATAGAGATAG AGAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.003 +strand +16 : +25 TCTACtTCAC AC RSP00428 Mean Expected Number 0.004 +strand -46 : -35 AAAAAAtGGTTA AC RSP00524 Mean Expected Number 0.007 -strand -20 : -26 ACACGTG AC RSP00864 Mean Expected Number 0.004 +strand +39 : +47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand +41 : +49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand +43 : +51 AGAGAGAGA AC RSP00889 Mean Expected Number 0.004 +strand -18 : -12 CCACGCA AC RSP00966 Mean Expected Number 0.002 +strand -28 : -19 GGCACGTGtT AC RSP01152 Mean Expected Number 0.002 -strand -19 : -28 aACACGTGCC AC RSP01631 Mean Expected Number 0.002 +strand -170 : -160 CTTGAAAGCTA AC RSP01637 Mean Expected Number 0.001 +strand -170 : -160 CTTGAAAGCTA Totally 11 motifs of 9 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GLN1;5 |LOCUS: AT1G48470 |PROD: glutamine synthetase, putative |17917379..17919766 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.32 C - 0.14 1 cagtgtgacg tgtctgtatt gtttcattga tgaatctgtt acaccgttga 51 gtgattgatt ctcaaataaa ttggtcccaa agctttttat caatatgtga 101 tggttattaa tggatactta ataaaagatg ccattatact aatcaacgat 151 tattgttgag aaaacaataa aataggatct caagagaaat agccgcttct 201 ATAAAAATAG TGAGAGTGAC TGAGATCAAT AGAACCAATC TCAGAATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.002 +strand +33 : +42 AACCAATCtC AC RSP00680 Mean Expected Number 0.007 -strand -160 : -169 TAACAGAtTC AC RSP01035 Mean Expected Number 0.006 +strand -193 : -187 ACGTGTC AC RSP01258 Mean Expected Number 0.002 +strand -195 : -188 TGACGTGT AC RSP01662 Mean Expected Number 0.000 +strand -197 : -186 TGTGACGTGTcT Totally 5 motifs of 5 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1480. Group TF: HY5 /AC: RSP01662//OS: Arabidopsis thaliana /GENE: ARR8 (At2g41310)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 3-phosphoshikimate 1-carboxyvinyltransferase |LOCUS: AT1G48860 |PROD: the same as GENE |complement(18072376..18075134) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.27 C - 0.20 1 aagaacttgg tttaagaaac ctcaagcgat tgcgattttg ggtcttaagc 51 ttgaaaaaag tgttgtatgg aacaaacaaa ctaacatatc ggaacaagct 101 tggctttggt tttaaagctg atagataatg gtcgaaccat aaccggtatg 151 gcccaagatg ttcatgtttt ttaaaactca ccaaagctat atcactaacc 201 CACACATTCT TGCAGAAGGT TTTAGAATCA CAAAGCATAA CTCACCTACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.004 +strand +41 : +50 CtCACCTACC AC RSP00286 Mean Expected Number 0.001 +strand +40 : +50 aCTCACCTACC AC RSP00871 Mean Expected Number 0.007 -strand +46 : +37 GGTGAGTtAT AC RSP00950 Mean Expected Number 0.001 +strand +41 : +51 CTCACCtACCC AC RSP00979 Mean Expected Number 0.006 -strand -131 : -140 CCATACAACa AC RSP01063 Mean Expected Number 0.001 +strand -83 : -72 cTGATAGATAAT AC RSP01079 Mean Expected Number 0.000 +strand +40 : +51 AcTCACCTACCC AC RSP01103 Mean Expected Number 0.008 +strand -184 : -177 AAACCTCA Totally 8 motifs of 8 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF 997. Group TF: DcMYB1 /AC: RSP01079//OS: Daucus carota /GENE: DcPAL1/RE: box-L1 /TF: DcMYB1 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: universal stress protein (USP) family protein |LOCUS: AT1G48960 |PROD: the same as GENE |18116154..18117284 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.27 C - 0.20 1 ttgcctaaca gtgtaagatg caatgcaata catacatatt caccacttta 51 tcctaataac aaaaaaacac ggtccatgat ttcatactca acttcacatt 101 tgacccactt ttaatttatt tccaactaca aagaaattcc attttatact 151 attatttaca aatacaacac atattgagag agagagagag agtgagtcac 201 AAGAATTACG ACACTAAACC TAAACCCAAT TCTCGAGAAA AAGAAAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 +strand -132 : -125 ACGGTCCA AC RSP00190 Mean Expected Number 0.008 +strand -8 : -2 TGAGTCA AC RSP00383 Mean Expected Number 0.009 -strand -96 : -102 GGTCAAA AC RSP00861 Mean Expected Number 0.002 +strand +42 : +50 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -24 : -16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -22 : -14 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -20 : -12 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -18 : -10 AGAGAGAGA AC RSP01061 Mean Expected Number 0.000 +strand -9 : -1 GTGAGTCAC AC RSP01283 Mean Expected Number 0.000 +strand -25 : -9 GAGAGAGAGAGAGAGAg Totally 10 motifs of 7 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myb family transcription factor |LOCUS: AT1G49010 |PROD: the same as GENE |18136313..18137593 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.23 C - 0.24 1 ttatcctgcg catatgcact gtcctctata ctatcatgcg catatacaaa 51 tgtccattct tatcatgcgc atatacaaat gtccattctt atcatgcgca 101 cctcaactta ataccaaaca aaaaaaaaag tttcacaaaa ctccaaaagg 151 taaagaatct gacccattca catatgcgtt tcaaaaacac tatcatgtcc 201 ACCACACGAT TAAACCAAAG AGAAGAGAGA GAGAGAGAGA AACAGAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand +24 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +26 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +28 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +30 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +32 : +40 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 +strand +25 : +41 GAGAGAGAGAGAGAGAA Totally 6 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NADH-ubiquinone oxidoreductase-related |LOCUS: AT1G49140 |PROD: the same as GENE |complement(18180440..18181962) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.21 T - 0.29 C - 0.17 1 gcttaggaag aaaggtattt ataagagtct tttatattct ggcttggggc 51 acaagagtcc tttcctttta ttttatttac ttttcccgtt gttcattttt 101 tcaactaagc aagctttatc tgggccgagg tgaggcccat taATTGAatt 151 aaaagcccaa aataacaaca aaacattacc tgattgtcgg aaaatcagac 201 GGAAACAAAA GAAATCAAAA ATCCGATGGG GAGGAAGAAG GGATTGCCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.009 +strand +8 : +18 AaAGAAATCAA Totally 1 motifs of 1 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G49245 |PROD: the same as GENE |18222418..18222922 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.31 C - 0.24 1 gggagccctt ccagaaattc tcgaaggccc aagacaagct taggcccagg 51 agggggtttg gaaatagttt tcaaccagca atagacgcgc ctcggttaga 101 acctcattag ctgcgtcATT GCcccaagcg caaagataaa tttttctcac 151 ctcaaagccg ctttatttat actcgaccaa aacctatcat cttataactt 201 GTTTCCGATG TGGGACTCTG GCTTTTACCA ATTTTTTCTT TTTAATTTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00020 Mean Expected Number 0.001 -strand -24 : -35 GTCGAGTAtAAA AC RSP01680 Mean Expected Number 0.000 -strand +16 : +6 GTCCCACATCG AC RSP01687 Mean Expected Number 0.009 -strand -41 : -47 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 19. Group TF: GT-1 /AC: RSP00020//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box6 /TF: GT-1 1498. Group TF: PpSBP2 /AC: RSP01680//OS: Arabidopsis thaliana; Glycine max /GENE: U2 & U5 (At); U1a & U1b (Gm)/RE: -80 element (cons) /TF: PpSBP2 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pfkB-type carbohydrate kinase family protein |LOCUS: AT1G49350 |PROD: the same as GENE |18268651..18271330 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.17 T - 0.26 C - 0.12 1 actcgggagt ctgtagtgca tacttaaatt caaattgatt tttagaacaa 51 taataacaat tttttaagaa aataaaattt aaaatttcga aaaaacttac 101 cattcagtgt agaaaatgtc tgtaagtcaa ctaatgacta tgagtgacgg 151 agttaaaaga aaaaaaaaaa aaaaaagaga tagagtacag agacaatata 201 GAACGACAGA ACAAACAGAT CTATCAGTTT ACTGACTACA GAGAGGATTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.006 -strand -158 : -165 AAAAATCA AC RSP01236 Mean Expected Number 0.001 -strand -58 : -67 TCATAGTCAT Totally 2 motifs of 2 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cell death associated protein-related |LOCUS: AT1G49650 |PROD: the same as GENE |complement(18380923..18382302) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.43 C - 0.08 1 taaatctgat aaggctttga aattcttgaa gaagtttgtc gagtttatta 51 ttggttgaaa cttgaaagaa tgttttttgt gtaaatgttc ttcatgatca 101 tgtaatcttg tttttaagaa ataaaataca tgaatttcag actgtgtgag 151 agttatatga acctgttaaa tgtgtgttat tattttcttc aacatgagaa 201 AAAAATATGT GTAAAATATT AATTTGTTTT TTTTTGTATT CAAATTCTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.009 -strand -179 : -186 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G49850 |PROD: the same as GENE |complement(18458732..18460190) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.18 G - 0.17 T - 0.40 C - 0.25 1 gttttcttgg gacctatgta ttagtggact ttacttggat aggcccaata 51 attgggcttt tccccttagt tttttattac agcgacaccg tttttaaaga 101 tgttttgtct tagctccgac agcaagtggg agatgacgtc accttttcac 151 tgcagtttcc ctttactttt tcctcgcaat tttctctctt ctctctctct 201 GTCCTCCTTA TCTCATCGTC TCTGACTCGC TGCACTTAGT TTCAGATCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.002 -strand -69 : -75 CTCCCAC AC RSP00522 Mean Expected Number 0.004 -strand -72 : -78 CCACTTG AC RSP01060 Mean Expected Number 0.002 +strand -155 : -147 CAATAATTG AC RSP01060 Mean Expected Number 0.002 -strand -147 : -155 CAATTATTG AC RSP01077 Mean Expected Number 0.001 +strand -155 : -147 CAATAATTG AC RSP01654 Mean Expected Number 0.004 +strand -69 : -60 GATGACGTCA AC RSP01654 Mean Expected Number 0.006 -strand -58 : -67 GGTGACGTCA AC RSP01664 Mean Expected Number 0.000 +strand -69 : -58 GATGACGTCAcC AC RSP01664 Mean Expected Number 0.000 -strand -58 : -69 GgTGACGTCATC AC RSP01730 Mean Expected Number 0.000 -strand -58 : -69 GGTGACGTCATC Totally 10 motifs of 7 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1482. Group TF: HY5 /AC: RSP01664//OS: Arabidopsis thaliana /GENE: ARR9 (At3g57040)/RE: C-box (2) /TF: HY5 1538. Group TF: STF1/HY5 /AC: RSP01730//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CRE (G/A): /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: Erv1/Alr family protein |LOCUS: AT1G49880 |PROD: the same as GENE |18467685..18469745 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.35 C - 0.11 1 aaaccagcat tgcaacaaat aaattatgaa ttatcagacg aattagtcga 51 catatgaata aatttaaatg atttttgctg aattaaatca taaaataaat 101 aaatattatg cggtaagaaa aatttcatgt gttattttta ctatttataa 151 taatttattt caaattttat ttattttcag gcaaagcgaa aggaagaaac 201 AAACAGTTGA GCTGTTGAGG CATTGTCTAA TTTCTCGAGT GATTTCTCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 -strand -55 : -66 AAAtAGTAAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLPR1 |LOCUS: AT1G49970 |PROD: |complement(18505201..18508277) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.29 C - 0.19 1 tgtctcttat ctacattaca gagaagaaac aaacatcttt ttatttatta 51 acaaagagtc cctaactatg taatttacaa gaacaaaccc tcaaatctat 101 taaaaataga ttccaaaccc agatagaaat ttgtagagac aaaaccggtt 151 taatagacaa atattctcaa agcgattctg gttcggtcgg gattttgact 201 GTACTCAGTA CTTACATCTT CTTCATCTGA CGATAGCAAA AATGACAAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01014 Mean Expected Number 0.006 -strand +29 : +20 CAgATGAAGA AC RSP01641 Mean Expected Number 0.007 -strand -57 : -66 TtTTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G49975 |PROD: the same as GENE |18508484..18509265 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.35 C - 0.15 1 aatcccgacc gaaccagaat cgctttgaga atatttgtct attaaaccgg 51 ttttgtctct acaaatttct atctgggttt ggaatctatt tttaatagat 101 ttgagggttt gttcttgtaa attacatagt tagggactct ttgttaataa 151 ataaaaagat gtttgtttct tctctgtaat gtagataaga gacataaaac 201 AAGAATCTTA TCTTCTGGTC AAGAGAGAGA TGAGCTCCAT AAGCCAAAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 -strand +14 : +6 AAGATAAGA AC RSP00319 Mean Expected Number 0.002 -strand +17 : +9 CAGAAGATA AC RSP00441 Mean Expected Number 0.010 -strand -56 : -65 AACAAAGaGT AC RSP00593 Mean Expected Number 0.003 +strand +3 : +11 GAATCTTAT AC RSP00864 Mean Expected Number 0.001 +strand +22 : +30 AGAGAGAGA AC RSP01031 Mean Expected Number 0.009 +strand +2 : +9 AGAATCTT AC RSP01640 Mean Expected Number 0.005 -strand -4 : -13 tTATGTCTCT AC RSP01641 Mean Expected Number 0.005 +strand -150 : -141 TtTTGTCTCT Totally 8 motifs of 8 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G50020 |PROD: the same as GENE |complement(18522758..18525363) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.28 C - 0.25 1 atgcggcaat ttggcagcca cacacacatg gacagcgtta gcgtactgta 51 gataaataat ccgtactcgt gctaacgtac gcttcaaata gttaaaggtg 101 ataactttca ccgttgtctc ggcaccactt gctcgaatAT TGAcaccttt 151 ttcttcccca gaaaaaatcc aaacaaatag aattttgccg tctgaaattc 201 CTAAAACTAT AAAACACAGC TTCCTTCTTC TCCTATATAT TCATCGGCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00474 Mean Expected Number 0.000 -strand -70 : -81 CAAGTGGTGCcG Totally 1 motifs of 1 different REs have been found Description of REs found 452. Group TF: Alfin1 /AC: RSP00474//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS4 /TF: Alfin1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G50170 |PROD: the same as GENE |18585692..18587392 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.27 C - 0.21 1 ttctcggtca aaagcccaat tgtgggatgg cccattaatg ataaagcccc 51 ttttaatttt aaaaaaacaa acaaagccgg cctgaaataa taatcgggtc 101 ccgggttgac tggtccgacc gaccggttcg gtgagatatt aatgaatgtt 151 tttcttcact ctcccgattt caatttttcg ggatcgagtc cgttccgaca 201 AATTAATTTA ACAGTCAATG CCGGCAAAAA AAAAAAAAAA TTAACAGTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.008 -strand -193 : -199 ACCGAGA AC RSP00892 Mean Expected Number 0.004 -strand -59 : -67 TTAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATHX |LOCUS: AT1G50320 |PROD: thioredoxin x |complement(18642098..18643196) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.25 C - 0.20 1 tatttgaaaa agtcatcgtt cacctgtgaa aaattacgca actccggcga 51 ggactatttt caactatggg cctagcccca attagtccaa ttagtaagga 101 gcttaaaatg gttttctcaa agtacggggc aaaagtaaaa gaataaaaaa 151 gtagtggacc ttgagaaaag tcatcaccag ctttccttcc tatgccacac 201 AAACGTGTTC TTCTGAATAT GAGTCAAACA CAGAGAAGAT TAGGAGAACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.004 +strand -80 : -71 AGTACGgGGC AC RSP00699 Mean Expected Number 0.000 +strand -196 : -182 TGAAAAAGTCATCGt AC RSP01000 Mean Expected Number 0.005 +strand -9 : +1 ATGCCaCACA AC RSP01205 Mean Expected Number 0.009 -strand -90 : -99 CCATTTTAAG Totally 4 motifs of 4 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 665. Group RE: Box IV /AC: RSP00699//OS: Brassica oleracea /GENE: SLG13/RE: Box IV /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: serine/threonine protein phosphatase, putative |LOCUS: AT1G50370 |PROD: the same as GENE |18662384..18665642 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.17 1 caaaaacatt gaaaatgtgt agtatactcc attaaagatt tgtgtaatga 51 agtaatagat aaaaattaaa ttgatgttta atatgttgcc aaaaaaatga 101 ttaaaaataa atatccaacg aatagagttt ggggatggag gaagaccaaa 151 tcgggttcgg gtcgagattg tttggttcgt tgtgtttccc ctttctctct 201 CTCTCCCTCT TTCCCCCTTA CGTAACCCTA AGCGGACGGA GCAATGCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.009 -strand -29 : -36 AACAATCT AC RSP00864 Mean Expected Number 0.001 -strand +4 : -5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +2 : -7 AGAGAGAGA AC RSP00865 Mean Expected Number 0.000 -strand +6 : -3 GGAGAGAGA AC RSP00943 Mean Expected Number 0.006 -strand -151 : -161 TCATTaCACAA AC RSP01283 Mean Expected Number 0.000 -strand +9 : -8 GAGgGAGAGAGAGAGAA AC RSP01596 Mean Expected Number 0.006 +strand -161 : -151 TTGTGtAATGA Totally 7 motifs of 6 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G50440 |PROD: the same as GENE |18689445..18691575 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +322 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.15 T - 0.34 C - 0.26 1 tctcggccaa agcctcagat tctgatctgt gttgactaat caacagagtc 51 tgcgaagtta acgatgaaga cgatgaactt cacaggtcta ctgtgaaact 101 cagataaatc ccacgtgtca cgtgctctcc acatgttttt tctaattcca 151 attttaccct tgagactttt cttcgccatc gtttttgatt gatcccaatc 201 TTCTTAGCTT CTTCTCTCTC AACCCTCAAA AGATCTTCGT CATCTCTGTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.004 +strand -91 : -82 CcCACGTGTC AC RSP00204 Mean Expected Number 0.003 -strand -82 : -91 GACACGTGGg AC RSP00219 Mean Expected Number 0.000 -strand -81 : -92 TGACACGTGGgA AC RSP00340 Mean Expected Number 0.008 +strand -91 : -82 cCCACGTGTC AC RSP00680 Mean Expected Number 0.005 +strand -160 : -151 cAACAGAGTC AC RSP00936 Mean Expected Number 0.000 +strand -92 : -81 TcCCACGTGTCA AC RSP00949 Mean Expected Number 0.003 -strand -163 : -170 TAGTCAAC AC RSP01019 Mean Expected Number 0.007 +strand -137 : -131 ATGAAGA AC RSP01255 Mean Expected Number 0.003 -strand -83 : -90 ACACGTGG Totally 9 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: UBC20 |LOCUS: AT1G50490 |PROD: ubiquitin-conjugating enzyme 20 (UBC20) |complement(18708079..18710143) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.33 C - 0.25 1 attaaagaaa gaagcaaact agccgttagt taaacgaaat tcaaaagctt 51 ccaagcggcg cttgtttgct ctccaacgtt cactaacaaa tccgctttaa 101 attttccctt ttctttttta ttccatttaa agtcaaagcg acgtcgtttt 151 ctctcactca tacgccgttt tataaccaac ctcagagact ctcatcgatc 201 GATCTCTCTG TCTCTCGCAT CGGAAGTACG AAGAAGGATC TTTGTTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01476 Mean Expected Number 0.009 +strand -75 : -68 TTTAAAGT AC RSP01640 Mean Expected Number 0.009 +strand +6 : +15 CTcTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G50740 |PROD: the same as GENE |18811340..18812667 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +189 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.35 C - 0.09 1 aaaattttgg cttaacgtta tcgcttgttg catgatgtta gtatggaagt 51 tagtagtgat gatttttttg acgaaaaaat tactatgtaa tatgtaatga 101 taaatatgta atgtgttatt aaatttaaag tgttaataag gccattacat 151 taatcaatta ttcggggtat attagtaatt ttgacgaaat catgagatct 201 AAAAGTGGGA GCAGTTGATT GACGTTCTAG AGACCGTTGA CGAAGAAACG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.000 +strand +31 : +39 AGACCGTTG AC RSP00472 Mean Expected Number 0.000 +strand +2 : +13 AAAGTGGGaGCA Totally 2 motifs of 2 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 450. Group TF: Alfin1 /AC: RSP00472//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS2 /TF: Alfin1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT1G51070 |PROD: the same as GENE |18931559..18933430 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.29 C - 0.15 1 gaatggactt ttgagttaaa tttgggaaag ctactgggaa tgacatcatg 51 agaggtgtat aattgagcaa ctatgacata tattaaaaga gatctgaagg 101 attgatgatg attggtgggC CAATaatgta caacatccat gaaaatgaaa 151 gatcaaaatt atataataga aaccgattga gagagaaaga gaatccatgc 201 CTAGCACTAT ACCATATCTC TTTTTTCTTC CGTTTTTCCA CACATTGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 +strand -10 : -2 GAATCCATG AC RSP00416 Mean Expected Number 0.009 +strand -67 : -61 CATCCAT AC RSP00445 Mean Expected Number 0.006 -strand +26 : +17 AAAAAAGAGA AC RSP00572 Mean Expected Number 0.008 -strand -120 : -127 ATATGTCA AC RSP00861 Mean Expected Number 0.004 +strand -17 : -9 AGAAAGAGA AC RSP01065 Mean Expected Number 0.001 +strand -103 : -93 AGGATtGATGA AC RSP01470 Mean Expected Number 0.010 -strand -59 : -68 TCATGgATGT AC RSP01602 Mean Expected Number 0.008 -strand -19 : -26 TCTCAATC Totally 8 motifs of 8 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G51110 |PROD: the same as GENE |18939016..18941327 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.31 C - 0.16 1 gtctcatgtg aagaatcaaa acaaagattc atgcttttgg ttttgcaatt 51 tgtgaggaag cttaagggtt tttgggagga aaaaacttaa ttagttgaga 101 aaattttact tccactagtt tcatatttca agatatttca ccaagactca 151 agctttattg tacaccacac attaaaaatg caaagtttaa tcattttaac 201 AAAAGCTTCA CAAGCAGCAG TAGACAGCAA CAATGGTGGC AGTCAGATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.001 -strand -156 : -164 CAAAACCAA Totally 1 motifs of 1 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G51550 |PROD: the same as GENE |complement(19121094..19122975) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.28 C - 0.22 1 gattctcaaa actatcgggt catttccaaa gttccaaaaa gtttgaaatt 51 ttgtgcgggc attttttatc cgaagatgca aaggaaaaaa acaaaaaagg 101 aaggattttt atttttttac cgtgatagta acgaacgaga cagtgacgag 151 acaacaatca tcattcccaa taattcttct caccaagaat ctaaaatcct 201 TCTCCGATTT CCTCTCATGG CGGCGGAATC AACCAGAAAC TCTTCTCCGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00258 Mean Expected Number 0.000 -strand -48 : -64 TGTCTC-- +5 bp --TGTCTC AC RSP00385 Mean Expected Number 0.009 -strand -152 : -159 ATTTCAAA AC RSP00438 Mean Expected Number 0.008 +strand +19 : +24 GGCGGC AC RSP00807 Mean Expected Number 0.008 -strand +24 : +19 GCCGCC AC RSP00887 Mean Expected Number 0.003 +strand -16 : -8 AAGAATCTA Totally 5 motifs of 5 different REs have been found Description of REs found 251. Group TF: ARF /AC: RSP00258//OS: Glycine max /GENE: GH3; synthetic promoter constructions/RE: D5 /TF: ARF 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: UBP6 |LOCUS: AT1G51710 |PROD: ubiquitin-specific protease 6, putative (UBP6) |complement(19179313..19183631) |SUPPORT | 17 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.21 C - 0.23 1 gagatgatct tatgttaacc caaattttca accggtttaa ttagaattga 51 agtgacatat aaccggaggg agctgatatt tagaaccgag attcaaacta 101 accggacaaa cccgagtgga accggatcca accccaaacc cgacccgctc 151 caaaaggaag agacggtgac atatatcgga actttgtaga atcagacaac 201 AAAAAGCAAA ATCTAATTTC GTTGCCGTCT CTCCAAGCAA GAAGAAGCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00572 Mean Expected Number 0.005 -strand -27 : -34 ATATGTCA AC RSP00572 Mean Expected Number 0.005 -strand -141 : -148 ATATGTCA Totally 2 motifs of 1 different REs have been found Description of REs found 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SYP81 |LOCUS: AT1G51740 |PROD: syntaxin 81 (SYP81) |19192523..19194965 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +208 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.31 C - 0.25 1 acctttgtcg tggaagcttt tgagattgcc tgaatatcga actccacagt 51 gagagtcgcc tcgtgaccaa gagcgacgtt aacgagagat aaacctaaag 101 gagagaatca gaactttacg atccccaaaa cggtgtcgtc gaatggattt 151 ctcactttat tttatttttt acgaaacaga aaaaaatgaa aggccttttt 201 CTCTCTCTCT CTCTCTCTTC TCGCTTCTCT TCTCCTCTCC GATCTTCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.003 -strand +18 : +10 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +16 : +8 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +14 : +6 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +12 : +4 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +10 : +2 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +8 : -1 AGAGAGAGA AC RSP01015 Mean Expected Number 0.004 +strand -18 : -9 aAAATGAAAG AC RSP01214 Mean Expected Number 0.003 -strand -68 : -77 CCGTTTTGGG AC RSP01283 Mean Expected Number 0.000 -strand +17 : +1 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +15 : -2 GAGAGAGAGAGAGAGAA AC RSP01283 Mean Expected Number 0.000 -strand +13 : -4 GAGAGAGAGAGAGAaAA Totally 11 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cryptdin protein-related |LOCUS: AT1G51915 |PROD: the same as GENE |19297147..19297638 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.15 T - 0.30 C - 0.11 1 tgatatgtga atgtgtatgt gcaaaatggt caaaatttaa tgaaaattaa 51 caattcacaa gtaaaagtaa atctatggtg ttagaattgt agctataaat 101 atcccattaa ctagtggata aaggaaagga agacaaataa aaactagtgg 151 acaaagaaaa gaaaaggaaa acttaaattt ctgaactttc aatagatatc 201 ATCCAACGAG TAATATTTTT TTTCTTGACT AATATAAACA TCATTTACTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00263 Mean Expected Number 0.000 +strand -1 : +8 CATCCAACG AC RSP01058 Mean Expected Number 0.005 +strand -89 : -82 TAGTGGAT AC RSP01743 Mean Expected Number 0.000 -strand -165 : -177 aTTTTGACCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: mitochondrial processing peptidase alpha subunit |LOCUS: AT1G51980 |PROD: the same as GENE |complement(19327071..19330551) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.31 C - 0.18 1 gaaattggct ataggttata tagtttagat ttgttcagat tgataaatag 51 tctaaaaacc actttgaata aatattagga ttgggccaag cccataacac 101 aatATTGGgt cagattttag tacatattat gggcctatgt tagcaagata 151 tcaccgagta cgtagcaact tagattctaa agtctaaact aaacaaaatc 201 GTAAATAAAC TGAGAAAAAG CCTCCGTCTC CTCCTCTCTC TCTATTCATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.002 +strand -44 : -35 AGTACGTaGC AC RSP00857 Mean Expected Number 0.004 -strand -159 : -168 CaATCTGAAC AC RSP00864 Mean Expected Number 0.001 -strand +43 : +35 AGAGAGAGA AC RSP01092 Mean Expected Number 0.008 -strand -21 : -31 tTAGAATCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: photosystem I reaction center subunit VI |LOCUS: AT1G52230 |PROD: the same as GENE |19458505..19459337 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.28 C - 0.19 1 aaaattgaaa ctttagagat tttgattcga ttttggagac agagacgaag 51 aaatttttgg ttatggatta gagatagcct tatcttttta taatccacgt 101 ggcatttcct aagtggcata tcaaatctca aagatgacaa cCCAATtcgc 151 cacgtggcag aacaagatct atcaaatgag tgaagaagat tctccactat 201 ACAAATTACA TCAATCCACT CACTTACTTT GGCAACAAAC AAACAACAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.000 +strand -52 : -43 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -43 : -52 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -107 : -98 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -52 : -43 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -43 : -52 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -98 : -107 GCCACGTGGa AC RSP00153 Mean Expected Number 0.001 +strand -106 : -97 CCACGTGGCa AC RSP00153 Mean Expected Number 0.001 +strand -51 : -42 CCACGTGGCa AC RSP00153 Mean Expected Number 0.001 -strand -44 : -53 CCACGTGGCg AC RSP00175 Mean Expected Number 0.001 +strand -105 : -98 CACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -50 : -43 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -45 : -52 CACGTGGC AC RSP00189 Mean Expected Number 0.002 +strand -107 : -98 TCCACGTgGC AC RSP00204 Mean Expected Number 0.001 +strand -52 : -43 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -43 : -52 GcCACGTGGC AC RSP00340 Mean Expected Number 0.003 +strand -107 : -98 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 +strand -52 : -43 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -43 : -52 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -98 : -107 GCCACGTGGA AC RSP00683 Mean Expected Number 0.003 -strand -98 : -107 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -106 : -99 CCACGTGG AC RSP00718 Mean Expected Number 0.001 +strand -51 : -44 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -44 : -51 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -99 : -106 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -107 : -98 TCCACGTGGC AC RSP00938 Mean Expected Number 0.000 -strand -97 : -108 TGCCACGTGGAt AC RSP01031 Mean Expected Number 0.008 -strand -8 : -15 AGAATCTT AC RSP01032 Mean Expected Number 0.004 -strand +32 : +23 CCAAAGTAAG AC RSP01034 Mean Expected Number 0.004 +strand -104 : -98 ACGTGGC AC RSP01034 Mean Expected Number 0.004 +strand -49 : -43 ACGTGGC AC RSP01034 Mean Expected Number 0.004 -strand -46 : -52 ACGTGGC AC RSP01091 Mean Expected Number 0.004 -strand -170 : -180 ATcGAATCAAA AC RSP01593 Mean Expected Number 0.000 +strand -107 : -96 TcCACGTGGCAT AC RSP01726 Mean Expected Number 0.000 -strand -97 : -108 TGCCACGTGGaT AC RSP01734 Mean Expected Number 0.008 +strand -107 : -101 TCCACGT Totally 35 motifs of 19 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G52380 |PROD: the same as GENE |19512654..19515207 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +994 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.31 C - 0.15 1 gatatgttgc cagagacagg aaccaaaaga aaagtcattt ttcaatttat 51 atgaatcgaa gaaaactgta atcttgtaaa cataattaac acgaataaca 101 tattttTCAA Tgtgaccttt tgtgcataat aaaataaaat aattgaagtc 151 acacacaaat gtcgataaaa ataaaaaagt tgagaaagag agagagatac 201 AGAGCTGGAT GTTTTTTCCT CTATAAACCT CTTTTGCTTT CTCTCTTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.007 -strand -79 : -85 CAAAAGG AC RSP00861 Mean Expected Number 0.003 +strand -18 : -10 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -14 : -6 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -12 : -4 AGAGAGAGA AC RSP00872 Mean Expected Number 0.009 -strand -46 : -55 TGTGTGACtT AC RSP01641 Mean Expected Number 0.009 -strand -180 : -189 TCcTGTCTCT Totally 6 motifs of 5 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G52550 |PROD: the same as GENE |complement(19576596..19577699) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.33 C - 0.11 1 aaaacacaat attttttttt tttgtcgtca agaaaacaca atatttatgt 51 taaacaaaaa tgcatgatat ttcaatagtt tgtggaaaat tatagaaaat 101 atttcatttt ccttctttta gtttggtatt aagaaggaaa aaaccaaaaa 151 catttttttg ataatgtata cataaattaa aattaaaata atgagaaaac 201 AAAACAAGGT CCAAAATACC TTGTGAAGAA AATGGCGACG GCGTTTGCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.001 +strand -180 : -171 tTTGTCGTCA AC RSP00838 Mean Expected Number 0.003 -strand +41 : +36 CCGTCG AC RSP00969 Mean Expected Number 0.000 -strand -170 : -179 tTGACGACAA AC RSP01470 Mean Expected Number 0.007 -strand -134 : -143 TCATGCATtT Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G52590 |PROD: the same as GENE |complement(19592678..19593942) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.30 C - 0.20 1 tctcaagatc ggtaccaaat aaggaaaccg gtttacaaat taggaccggt 51 ttaagaaaat tctttagtga cgtggtttaa atctttggtt ggctgcattt 101 tgatgacgtg gttggctact ttttaatgac gtggcatatc ctttacccct 151 aggatcaatc cttatttacg gaaaaaccac ttctcaagga aactaaaatc 201 AAAGCTAAGC CAAACTCAGT GGCTCTCCGG TGAAGCTTTG AGATGGCGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.003 +strand -189 : -174 gTACCAAATAAGGAAA AC RSP00080 Mean Expected Number 0.003 -strand -174 : -189 TTTCCTTATTTGGTAc AC RSP00113 Mean Expected Number 0.000 +strand -74 : -66 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -133 : -126 TGACGTGG AC RSP00214 Mean Expected Number 0.002 +strand -97 : -90 TGACGTGG AC RSP00214 Mean Expected Number 0.002 +strand -74 : -67 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -67 : -74 CCACGTCA AC RSP00215 Mean Expected Number 0.002 -strand -90 : -97 CCACGTCA AC RSP00215 Mean Expected Number 0.002 -strand -126 : -133 CCACGTCA AC RSP00229 Mean Expected Number 0.001 +strand -186 : -177 CCAAATAAGG AC RSP00248 Mean Expected Number 0.003 -strand -66 : -75 GCCACGTCAt AC RSP00819 Mean Expected Number 0.003 -strand -66 : -75 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 -strand -66 : -75 GCCACGTCaT AC RSP00847 Mean Expected Number 0.005 -strand -90 : -99 CCACgTCATC AC RSP00913 Mean Expected Number 0.003 +strand -99 : -90 GATGACGTGG AC RSP00915 Mean Expected Number 0.004 +strand -99 : -90 GATGACGTGG AC RSP00916 Mean Expected Number 0.003 +strand -99 : -90 GATGACGTGG AC RSP00997 Mean Expected Number 0.004 +strand -99 : -90 GATGACGTGG AC RSP01033 Mean Expected Number 0.005 -strand -177 : -186 CCTTATTTGG AC RSP01034 Mean Expected Number 0.008 +strand -72 : -66 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -64 : -74 AtGCCACGTCA AC RSP01139 Mean Expected Number 0.001 +strand -131 : -123 ACGTGGTTT AC RSP01275 Mean Expected Number 0.004 -strand -66 : -75 gCCACGTCAT AC RSP01275 Mean Expected Number 0.004 -strand -89 : -98 aCCACGTCAT AC RSP01644 Mean Expected Number 0.000 +strand -151 : -139 TTTAAGAAAATTC Totally 25 motifs of 19 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1464. Group TF: WRAF1; WRAF2 /AC: RSP01644//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np5-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: signal peptidase, putative |LOCUS: AT1G52600 |PROD: the same as GENE |19594194..19596343 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.27 C - 0.23 1 ggggtaaagg atatgccacg tcattaaaaa gtagccaacc acgtcatcaa 51 aatgcagcca accaaagatt taaaccacgt cactaaagaa ttttcttaaa 101 ccggtcctaa tttgtaaacc ggtttcctta tttggtaccg atcttgagag 151 aaaacgctcg tcgtgcctta aagctgactc tgagagaaac tcttcttctt 201 CACTGCAAAC GCTTTTGAGA CAAAGTTCGT CACTTCGATC TGAATTATAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.003 +strand -78 : -63 TTTCCTTATTTGGTAc AC RSP00080 Mean Expected Number 0.003 -strand -63 : -78 gTACCAAATAAGGAAA AC RSP00113 Mean Expected Number 0.001 -strand -178 : -186 TGACGTGGC AC RSP00214 Mean Expected Number 0.003 -strand -119 : -126 TGACGTGG AC RSP00214 Mean Expected Number 0.003 -strand -155 : -162 TGACGTGG AC RSP00214 Mean Expected Number 0.003 -strand -178 : -185 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -185 : -178 CCACGTCA AC RSP00215 Mean Expected Number 0.003 +strand -162 : -155 CCACGTCA AC RSP00215 Mean Expected Number 0.003 +strand -126 : -119 CCACGTCA AC RSP00229 Mean Expected Number 0.001 -strand -66 : -75 CCAAATAAGG AC RSP00248 Mean Expected Number 0.004 +strand -186 : -177 GCCACGTCAt AC RSP00819 Mean Expected Number 0.003 +strand -186 : -177 GCCACGTCaT AC RSP00821 Mean Expected Number 0.003 +strand -186 : -177 GCCACGTCaT AC RSP00847 Mean Expected Number 0.009 +strand -162 : -153 CCACgTCATC AC RSP00913 Mean Expected Number 0.004 -strand -153 : -162 GATGACGTGG AC RSP00915 Mean Expected Number 0.006 -strand -153 : -162 GATGACGTGG AC RSP00916 Mean Expected Number 0.004 -strand -153 : -162 GATGACGTGG AC RSP00997 Mean Expected Number 0.005 -strand -153 : -162 GATGACGTGG AC RSP01033 Mean Expected Number 0.004 +strand -75 : -66 CCTTATTTGG AC RSP01034 Mean Expected Number 0.008 -strand -180 : -186 ACGTGGC AC RSP01106 Mean Expected Number 0.001 +strand -188 : -178 AtGCCACGTCA AC RSP01139 Mean Expected Number 0.001 -strand -121 : -129 ACGTGGTTT AC RSP01275 Mean Expected Number 0.005 +strand -186 : -177 gCCACGTCAT AC RSP01275 Mean Expected Number 0.005 +strand -163 : -154 aCCACGTCAT AC RSP01644 Mean Expected Number 0.000 -strand -101 : -113 TTTAAGAAAATTC Totally 25 motifs of 19 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1464. Group TF: WRAF1; WRAF2 /AC: RSP01644//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np5-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: biotin/lipoyl attachment domain-containing protein |LOCUS: AT1G52670 |PROD: the same as GENE |complement(19618635..19621240) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +152 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.28 C - 0.18 1 aaaaaaaaat gtatatatat atatatattt aaagagatag agagagctta 51 aaataaacaa tgagtcgatt tatactttga aaagctgttg ttgtggtaat 101 aatgggcttt gtggaccaag taatgggccc taaaacccaa agcaaatcca 151 gtttgctcca ctctgattgt atcgaacaag tgaaccactg actgactctc 201 ATCAAATTCG ATTTCATCGT CGTCACTCGT CAATCGCCAA ATCAACAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01463 Mean Expected Number 0.002 +strand -182 : -170 ATaTATATATTTA AC RSP01600 Mean Expected Number 0.008 -strand -119 : -126 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G52720 |PROD: the same as GENE |19644567..19645333 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.30 C - 0.22 1 aaataattgt atttcggaga aagtgcatat caagacattg caatctgaca 51 aagaaaaaaa agcgtgtaga cttatctatc tccctaggtt aacaatccaa 101 tgcatgcgtg tccaccttta aatctcccta cacaagcaaa attcagtaaa 151 aagcttgtac gttgattaca tatccaacga accatatcca ctttcaattt 201 GTTAATCATA TAAATTTGAC CCTAAAATCT ATCTCATTCT CTCATCAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01076 Mean Expected Number 0.001 +strand -98 : -89 CATGCGTGtC Totally 1 motifs of 1 different REs have been found Description of REs found 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H2A, putative |LOCUS: AT1G52740 |PROD: the same as GENE |19648963..19650099 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.20 T - 0.40 C - 0.16 1 gaatcaaaac atgggtgtta aaatttaata gttttctttc aagtgtcttt 51 ttcaatattg aactaaattt agggacgaat ttgtgattta tgattatttg 101 actttagATT GGgcttgggc ttttttcgca ggttggggta taagggtaaa 151 atcgtcattt gacagaccga cttgtctctc tctatctggg gaaaacgtct 201 ATCGGGAGAC TCCTCTTCGA GCTCATCTTC TTCTCTCTCT TTTTATCTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.004 +strand +31 : +41 TTCTCTCTCtT AC RSP00864 Mean Expected Number 0.002 -strand +40 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -18 : -26 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT1G52760 |PROD: the same as GENE |19655013..19656411 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.34 C - 0.16 1 aatgttcaca tagttttgat atacattatt atggctaatg ggttaatctt 51 taggacaaaa tggattattt ttgcattata caaaatttaa aataatataa 101 atgacatttt ctttaattaA TTGTatttaa tgccgtatat attaagtata 151 aactcatttc tcttcctctt gaaaaactca ctttatcacc accaaaaacc 201 AAAATTCACT GCCAAAAAAA ACACATCAAA ACGATGCCGT CGGAAGCGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00838 Mean Expected Number 0.005 +strand +37 : +42 CCGTCG AC RSP01497 Mean Expected Number 0.000 +strand +36 : +45 GCCGTCGGAa Totally 2 motifs of 2 different REs have been found Description of REs found 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NAM |LOCUS: AT1G52880 |PROD: no apical meristem (NAM) family protein |complement(19692625..19694210) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.33 C - 0.13 1 aactattgat ttagatagct acggtaatta atacgttttg atcgtccata 51 ttccacaaat ataaatagaa ataccatttg atgtgtaaca aaaaaatctc 101 atagacattt atggttttaa tacaaaaaaa attctcaaaa ATTGTaaata 151 aatacgagtg gatacgatgg tctacgtaca aaagattcca gaggataaaa 201 GCCATTTTGA TTTGTCGTTT TAATGCCTTC CATTTTTAAA AAGAAAGATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01702 Mean Expected Number 0.007 -strand -162 : -171 AAaACGTATT Totally 1 motifs of 1 different REs have been found Description of REs found 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G53035 |PROD: the same as GENE |complement(19765368..19766219) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +233 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.31 C - 0.16 1 ttgcaaccct atatgtaaaa aattactaaa ttcttattag cataattaat 51 ataattagtt gggacgtggg gattgaaatt gtctagcttt tctagaggaa 101 aaataataat gaaatttgtc caaaagagtg acccacatta aaccaaaaac 151 cttacaaatt ttcataactt tatagtatat taaaagaact caaaaatcat 201 GGAATCTATC AAAGTCCAAA TCCCTAAATG AGATCATCTC TCTTCCCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.004 -strand +6 : -3 GATTCCATG AC RSP00423 Mean Expected Number 0.009 +strand -138 : -133 GACGTG AC RSP00424 Mean Expected Number 0.009 -strand -133 : -138 CACGTC AC RSP00941 Mean Expected Number 0.009 -strand -123 : -130 TTTCAATC AC RSP01577 Mean Expected Number 0.009 -strand -114 : -123 GCTAgACAAT AC RSP01594 Mean Expected Number 0.009 +strand -130 : -123 GATTGAAA Totally 6 motifs of 6 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SPL4 |LOCUS: AT1G53160 |PROD: squamosa promoter-binding protein-like 4 (SPL4) |19810087..19811276 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.08 T - 0.36 C - 0.27 1 ttaatactta tctatgtaaa tctctttttc tttctttccc aaactttaat 51 ttttattttt ctgagctagc acatcaacgt aatcatgcac ttattccacc 101 agagaaacgt acaagaacac agtggtccat ctcccgactt tacttcacct 151 tttaaaccct tcaatttcgt caacaatatc atcaagtccc attcctcaaa 201 CATTGCTTAA CCTATTAGAG TTTCCTTCCT CCAACAAACC ATCTTTATAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00091 Mean Expected Number 0.002 -strand -39 : -50 GAAGGGTTtAAA AC RSP00285 Mean Expected Number 0.001 +strand +29 : +41 CTCCAACAAACCa AC RSP01086 Mean Expected Number 0.002 -strand -88 : -97 TgTACGTTTC Totally 3 motifs of 3 different REs have been found Description of REs found 89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown 276. Group RE: Box P /AC: RSP00285//OS: Petroselinum crispum /GENE: PAL-1/RE: Box P /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DJ-1 family protein |LOCUS: AT1G53280 |PROD: the same as GENE |complement(19867968..19871057) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 tctcctacaa tattatctct catcaataca tcaaaaccac aacaagttta 51 tgaacaaaac tctgaaccgg gaagttgttt tctgataaac caaactacac 101 gccgtcttga gttgATTGAt gacgtgttaa aagattaatg gctgattgtc 151 attttccatc caatcacatt aaaacacgtc aggataaagc ccgtttcatc 201 ACTGCTTCTC TTTCATCAAA AGTTCTTTAA GGAAAAAAAA AAACGTCAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00916 Mean Expected Number 0.001 +strand -83 : -74 GATGACGTGT AC RSP00997 Mean Expected Number 0.001 +strand -83 : -74 GATGACGTGT AC RSP01072 Mean Expected Number 0.009 +strand -82 : -73 ATgACGTGTT AC RSP01258 Mean Expected Number 0.001 +strand -81 : -74 TGACGTGT AC RSP01258 Mean Expected Number 0.004 -strand -20 : -27 TGACGTGT AC RSP01598 Mean Expected Number 0.006 +strand -54 : -47 TGTCATTT AC RSP01639 Mean Expected Number 0.008 +strand -57 : -48 GATTGTCATT AC RSP01654 Mean Expected Number 0.004 +strand -83 : -74 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 +strand -83 : -72 GATGACGTGTtA Totally 9 motifs of 8 different REs have been found Description of REs found 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G53345 |PROD: the same as GENE |19906163..19907549 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.15 T - 0.45 C - 0.16 1 aaagttgcat atgattatta ctactttttg attgatattt tttcatatga 51 agttgcattc tttcgctatc taatattctt tctttttttt tttttttgac 101 ggatgctacc tgattttcaa cgagtatata agggtgtttt cgtcatttgc 151 acttcatcag aaccctaaat aaagtccaga gtgtttctta gttgtctgat 201 AAATTTTCCT CCTCTTCGGC TAATCGTTCT GTGTATTAAA AAGTATTGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.006 -strand -32 : -38 TTTAGGG AC RSP00999 Mean Expected Number 0.005 +strand -138 : -128 TCgCTATCTAA AC RSP01304 Mean Expected Number 0.001 +strand -42 : -33 aGAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G53460 |PROD: the same as GENE |complement(19958158..19960300) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.17 T - 0.40 C - 0.19 1 tgtgcaacgt tgacaccctt tactcgataa ttggtctaat tttttttttg 51 aaaattttct agatcgacga tgtgcaattt gtgcattgtt tgcaactccg 101 acgATTGGaa acctaaattt ccggtacaaa tttaattaaa ccggatggtt 151 tggtttatta tatgttctat attattctgg tttggagaat catttcttct 201 CTTCTAAAAC CCTTTGCGTC TCTTCTCTAG AGAATCTCTC GGTTGCTCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00837 Mean Expected Number 0.002 +strand -140 : -131 AGATCGACGa Totally 1 motifs of 1 different REs have been found Description of REs found 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G53560 |PROD: the same as GENE |complement(19988423..19989649) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.27 C - 0.16 1 gaagattcga tgaagacagt aattgcgtgt tcaacttttg tttggtttgc 51 tgattgatgg atgtgtcaac tacttcaatt taacaatacc ataatctaaa 101 tgagcttttc taacaacaac cactcgtcca tgtgtctgct gccacgtgtc 151 taatttgcca caaccttaaa tctgattaaa caataatgag atagagagac 201 AGAGAGATAG AGAGAGAGAT AATGGGCAAA GAAAAAGACA AAAACAGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -52 : -60 ACACGTGGC AC RSP00056 Mean Expected Number 0.002 +strand -60 : -51 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -60 : -51 GCCACGTGtC AC RSP00073 Mean Expected Number 0.001 -strand -51 : -60 GaCACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -53 : -60 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -51 : -60 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -50 : -61 aGACACGTGGCA AC RSP00332 Mean Expected Number 0.008 -strand -109 : -116 ATGGTATT AC RSP00340 Mean Expected Number 0.002 +strand -74 : -65 TCCAtGTGTC AC RSP00340 Mean Expected Number 0.002 +strand -60 : -51 gCCACGTGTC AC RSP00524 Mean Expected Number 0.007 -strand -52 : -58 ACACGTG AC RSP00864 Mean Expected Number 0.003 +strand +9 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +11 : +19 AGAGAGAGA AC RSP00936 Mean Expected Number 0.000 +strand -61 : -50 TGCCACGTGTCt AC RSP01034 Mean Expected Number 0.004 -strand -54 : -60 ACGTGGC AC RSP01035 Mean Expected Number 0.007 +strand -57 : -51 ACGTGTC AC RSP01072 Mean Expected Number 0.009 +strand -179 : -170 ATTgCGTGTT AC RSP01255 Mean Expected Number 0.001 -strand -52 : -59 ACACGTGG AC RSP01640 Mean Expected Number 0.010 -strand +4 : -6 CTcTGTCTCT Totally 19 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G53645 |PROD: the same as GENE |complement(20029841..20032303) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.27 C - 0.21 1 tgtaatgtgc ttgaatttgg cctaatgtct ataactatgg gggatttcga 51 caaatcgaaa agtataaatc tcttcccatc aggtactcaa actacaggga 101 tgaatttaca aatatgcaGC AATaagtcaa cagaaacggc gacgtttcgg 151 aaaaccccca ttttccgatt aacacagtaa ctcaaaaccc tcaaatcctc 201 AATCGCCAGT GTTTACGAAA GTTCTTGAAA TTTGAAGAGA TCTCACAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.006 -strand -184 : -191 AATTCAAG Totally 1 motifs of 1 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transcription factor-related |LOCUS: AT1G53670 |PROD: the same as GENE |20040344..20041871 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +11 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.31 C - 0.21 1 tgttctctcg atttagttaa tgggcttgtg atgttaaaaa gcccaataac 51 ggcaccagtg agtctcgacg tggcagctag agttccagat ctcatctcac 101 atcctcaaca tgccacgtgt tctcttccat tcacagaaga aagaaaagac 151 ttcttcaaaa ttgttaattg aacaagtttc ggcgaaaacc attataagct 201 GTGATTGTGT GATGGCTTCT TCTACTAGAT TAACTATTAT ACAATCAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -81 : -89 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -82 : -89 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -80 : -89 aACACGTGGC AC RSP00296 Mean Expected Number 0.000 +strand -180 : -156 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -156 : -180 TGGGCT-- ** bp --AGCCCA AC RSP00682 Mean Expected Number 0.002 -strand -127 : -136 GCCACGTcGA AC RSP00819 Mean Expected Number 0.003 +strand -89 : -80 GCCACGTgTT AC RSP00860 Mean Expected Number 0.002 +strand -63 : -55 AGAAAGAAA AC RSP00986 Mean Expected Number 0.001 -strand -128 : -135 CCACGTCG AC RSP01034 Mean Expected Number 0.006 +strand -133 : -127 ACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -83 : -89 ACGTGGC AC RSP01134 Mean Expected Number 0.005 +strand -119 : -110 GTTCCAGAtC AC RSP01255 Mean Expected Number 0.002 -strand -81 : -88 ACACGTGG AC RSP01593 Mean Expected Number 0.000 -strand -80 : -91 aACACGTGGCAT Totally 14 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPME1 |LOCUS: AT1G53840 |PROD: pectinesterase family protein |20105113..20107335 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.25 C - 0.24 1 tttttgtctt taaaccaaat tacaatataa tcaagttgat taatcaaaat 51 aattacaacg ttatcatgaa tcttcacatg caagatccta cacacacact 101 tagacgacaa gaagtcaccg tggaacaagc gcgtcacgtt catcattcac 151 atttacttaa tcccacttaa aaaggcaaac aacaacatgt cttctctaac 201 ATAAACAACA GAACATAACA AAGCCCAAAC AATCTTAGTA ATAATCCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.004 -strand -90 : -99 CTTGTCGTCt AC RSP00940 Mean Expected Number 0.008 -strand -76 : -85 TTCcACGGTG AC RSP01205 Mean Expected Number 0.005 -strand -26 : -35 CCTTTTTAAG AC RSP01470 Mean Expected Number 0.009 -strand -116 : -125 TCtTGCATGT AC RSP01559 Mean Expected Number 0.003 -strand -67 : -72 ACGCGC Totally 5 motifs of 5 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PAE1 |LOCUS: AT1G53850 |PROD: 20S proteasome alpha subunit E1 (PAE1) |complement(20107622..20109663) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +203 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.30 C - 0.18 1 ttgagataaa ttggaacatg ttcaaattcc agtcagttct atagctgtct 51 cataattttt caaaaataca aagaaaggcc taattgggtg acccaggctt 101 aatatagtta ggcccatgaa agcccattat aaaaaacgct gcgtttagaa 151 acaatctaac ttgttcttca agaagaagtg cgtctttgaa agctaaaaag 201 AGAGCAAAAG CTTCTGTTTA TTCTCCGATT CGCAGATCAA TTAGCTGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.009 +strand -51 : -44 AACAATCT AC RSP01600 Mean Expected Number 0.008 -strand -10 : -17 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: senescence-associated protein-related |LOCUS: AT1G53885 |PROD: the same as GENE |20123393..20124120 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.34 C - 0.23 1 aatcattcca ttgaatgtat gagtttaggt cttagggtta ttttctgatg 51 aatagcaaaa gtagtaattc ccgacaagaa attggccaat gtcgaaaaag 101 tcaaattcca cattttaatt gagacataaa agacacatca cTCAATacag 151 taaaatatct acttttatat attcccaaaa accattcggc ttctgcttcc 201 ACTTCATCTC TCTCTCTCTC TCCCTTCTCA CATTTCTCTC CACTCAGATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00747 Mean Expected Number 0.001 -strand -151 : -162 CATCAGaAAATA AC RSP00864 Mean Expected Number 0.003 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +19 : +11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +17 : +9 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +15 : +7 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +23 : +15 GGAGAGAGA AC RSP00915 Mean Expected Number 0.008 -strand +8 : -2 GATGAAGTGG AC RSP01283 Mean Expected Number 0.000 -strand +22 : +6 GAGAGAGAGAGAGAGAt Totally 8 motifs of 5 different REs have been found Description of REs found 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RAP2.12 |LOCUS: AT1G53910 |PROD: AP2 domain-containing protein RAP2.12 (RAP2.12) |20138781..20140638 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.12 T - 0.29 C - 0.16 1 ctctgactaa atttttaatc ttatttactg caactaacta ttaataaact 51 aataaaatcc taatttacaa tatagatcta cagtaaatga atataaaagt 101 ctggtagtac cgtaaatagt acatcaagat aagggtataa tagtaaacaa 151 ccatcgtact cgcttcatct tttattttac tctaaaatct ctttctgaag 201 AAAACAACAA AGCAAAGCGT TGAAGAGAGA AGAAGAAGCA AAGATATAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 -strand -5 : -13 AGAAAGAGA AC RSP00960 Mean Expected Number 0.009 +strand -170 : -163 CAACTAAC Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G54060 |PROD: the same as GENE |20184347..20185992 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +293 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.39 C - 0.15 1 ctattttgta tttttatttc ttatatctgt ttttattggg ccttgaaagt 51 tattccaggc cttagcccat tagacttgat ttatctcgtt ttattttagt 101 tagagttttt gagacttgag acaacctacc taaccatact atagacaaga 151 aaataaaaat acttttgtat attagagaaa ttttgaaatc cgtcagtgtg 201 TATATTCAAT ATTCCTAACG AAAAAATGGC CAAAGCATAA ATACCTTATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.007 -strand -38 : -49 AGTATTTTTATT AC RSP00140 Mean Expected Number 0.003 -strand -37 : -49 AAgTATTTTTATT AC RSP00828 Mean Expected Number 0.000 +strand -81 : -70 GACAACCTACCt AC RSP01453 Mean Expected Number 0.005 +strand -77 : -71 ACCTACC AC RSP01641 Mean Expected Number 0.002 -strand -51 : -60 TCTTGTCTaT Totally 5 motifs of 5 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 774. Group TF: R2R3-type MYB /AC: RSP00828//OS: Arabidopsis thaliana /GENE: FLS/RE: MRE-core (AtFLS) /TF: R2R3-type MYB 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cation exchanger, putative (CAX10) |LOCUS: AT1G54110 |PROD: the same as GENE |20203086..20205363 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +491 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.19 T - 0.32 C - 0.24 1 ggagttgttg ttatcatcga cattgccacg atcatcctcg tatgggccag 51 gcccattaat atttgttcat caaaccgggt tttaccgcca ctaaaacgaa 101 tcaactATTG Gtttccgggt cacccgatta ggatgcgacg ctaccgatct 151 tttttctttc gattttgcgt caggagaaaa cgattaccac ttgaaccttt 201 GATTCAATCT CGTCCACTAA ACGATTACCA ACAATTTCTG GTTCGTGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00397 Mean Expected Number 0.003 -strand -109 : -116 AGTGGCGG AC RSP01091 Mean Expected Number 0.007 -strand +8 : -3 ATtGAATCAAA Totally 2 motifs of 2 different REs have been found Description of REs found 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATRPABC16.5 |LOCUS: AT1G54250 |PROD: DNA-directed RNA polymerase I, II, and III |20258605..20260220 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +272 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.36 C - 0.14 1 ttctaataca taacataaga aagaaaaaaa gaaagtgtgt catggtgtct 51 ttagcaagta tttttaacgg tcgagattaa tttcaaatac tgatcaagaa 101 agaaaaaaat tagttatgag aattACAATt ttataatggg cctcattgta 151 agcccattat aagcttacat aggactttta tgagtttttg ttctcagtct 201 GTCCCTTTAA TTGTTTTTTG GCTCTTCTAT CGCCCATCGC TTGGGAGATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.010 +strand -172 : -163 AAgAAAGTGT AC RSP00613 Mean Expected Number 0.008 +strand -108 : -101 ATCAAGAA AC RSP00860 Mean Expected Number 0.003 +strand -183 : -175 AGAAAGAAA AC RSP00860 Mean Expected Number 0.003 +strand -104 : -96 AGAAAGAAA Totally 4 motifs of 3 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dehydrin family protein, contains Pfam domain |LOCUS: AT1G54410 |PROD: the same as GENE |complement(20313446..20314382) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.36 C - 0.17 1 tataatattt ctttctttta aaggaatata atctacccca attaattgta 51 tcattatttc cagttaaaga accagtacag cacattggaa gaattaatct 101 tatcttcgcc acgccatata tctttctttc tactataaag taatctctaa 151 gaaaaataca aaccaataat aatatctcat tgatagtgat agattagtat 201 TAATTATCCA TTTTGGGCTA TAAATAGAGA CCCTTTGAGA TCCAAGTTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.006 -strand -95 : -103 AAGATAAGA AC RSP00860 Mean Expected Number 0.006 -strand -70 : -78 AGAAAGAAA AC RSP00860 Mean Expected Number 0.006 -strand -185 : -193 AGAAAGAAA AC RSP01214 Mean Expected Number 0.001 +strand +8 : +17 CCaTTTTGGG Totally 4 motifs of 3 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G54460 |PROD: the same as GENE |complement(20344267..20347196) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +629 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.12 T - 0.27 C - 0.14 1 atcattttca caatgtttag tttttcttca tctttctcta aatatatcaa 51 aaagtcaaaa agttctaaat aaagcgacac gccaataaaa aggcgaatct 101 atttgacatt ctattcgtcc aaaaaaaaag aaacgtattt gtatattcgt 151 caaaaagtaa atcgatgttg acaaaacaaa acaaaacaaa taaaatttta 201 TTAAGGGAAA CAAAAATAAA TTCCTCGAGA GATAGAAGTA AAAAAAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.001 +strand -200 : -189 ATCATTTTCACa Totally 1 motifs of 1 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: rubredoxin family protein |LOCUS: AT1G54500 |PROD: the same as GENE |complement(20360621..20361455) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.33 C - 0.14 1 caaaccacaa gttaattaaa tactaactcc atgattggtt actagaaaac 51 aattacgaat gatatatttt agtatatttt tttcaatcat gaattaaata 101 ataaaatagt ttgagttaaa ttaattATTG Aacaatattc ataaaacttt 151 tggggtgagt aaagaaataa gatggattga aaaaaggcca cgtggttgtc 201 ACAATGCTTT TCAAAAATCT TATCCAAGCA TAAGTCTCCT TGGTACCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.000 +strand -14 : -5 GCCACGTGGt AC RSP00073 Mean Expected Number 0.000 -strand -5 : -14 aCCACGTGGC AC RSP00153 Mean Expected Number 0.000 -strand -6 : -15 CCACGTGGCC AC RSP00175 Mean Expected Number 0.000 -strand -7 : -14 CACGTGGC AC RSP00231 Mean Expected Number 0.010 -strand -163 : -169 CCAATCA AC RSP00682 Mean Expected Number 0.000 +strand -14 : -5 GCCACGTGGt AC RSP00718 Mean Expected Number 0.000 +strand -13 : -6 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -6 : -13 CCACGTGG AC RSP00941 Mean Expected Number 0.009 +strand -120 : -113 TTTCAATC AC RSP01034 Mean Expected Number 0.002 -strand -8 : -14 ACGTGGC AC RSP01594 Mean Expected Number 0.009 -strand -113 : -120 GATTGAAA AC RSP01762 Mean Expected Number 0.010 -strand +43 : +38 CCAAGG Totally 12 motifs of 10 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G54520 |PROD: the same as GENE |20367115..20369706 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.21 1 gcagcataag accatggtga tattcatttg tattggactt agtattgctc 51 attgagcttg gtaatggact ttgaccgaca aaaagaaaaa gaatttctga 101 ctcatttcaa atggaggtcg gtacttataa taaaccggtt tgaggcataa 151 accgattgca aaaccatact ttatcctaaa atccaccgga aaaaaaatct 201 CCCTCCAAAT ATATTTTCTC CACACTATCT TTGTCGTCTT CTTCCCCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.007 -strand +17 : +9 AAAATATAT AC RSP01013 Mean Expected Number 0.005 +strand -93 : -84 CAAATGGAGg AC RSP01014 Mean Expected Number 0.009 -strand -171 : -180 CAAATGAAtA Totally 3 motifs of 3 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT1G54570 |PROD: the same as GENE |complement(20384145..20388688) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.43 C - 0.13 1 ccgatggaaa tttaaaaatt cttttctact aaagatttat tttattattt 51 ttagcacttt ctatgaaata catttctaaa acgaaaccga aagaaagaag 101 aaatattaat aatctttctt ttttaaaaaa aATTGCtttg tctgttcaaa 151 aacttttgta agatattttt aaagtttcaa tctttttaaa attatttttt 201 ATTTTTTGGT AATCGTTTCT AAGAAATCTC TCCTCCCGTT GCCTGTGGAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.009 +strand -12 : +2 AAATTATTTTtTAT AC RSP01191 Mean Expected Number 0.000 -strand +48 : +41 CCACAGGC AC RSP01231 Mean Expected Number 0.008 +strand +36 : +41 CCGTTG Totally 3 motifs of 3 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor 1136. Group RE: A-box (2) /AC: RSP01231//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ACP3 |LOCUS: AT1G54630 |PROD: acyl carrier protein 3, chloroplast (ACP-3) |complement(20405044..20406671) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.42 C - 0.22 1 taattgtttt atttcgcttt aagaaaaaaa acaatatgtt tggatttttt 51 ttccgaattt gttatttctc tacctgcatc tgccaaatca cccacctcac 101 ctgacttgtc tgtctgaatt ctctcATTGG aatctcagaa aagttttttt 151 tttttttttg tttaggttaa aatactataa aattaaaaat aagtctccca 201 CTTGGATTCT TCACTGTGTC TCACATCTCT TTGTCTTCTC CGCCTCCTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00314 Mean Expected Number 0.001 +strand -5 : +6 TCCcACTTGGA AC RSP00654 Mean Expected Number 0.008 +strand -112 : -103 CACCCACcTC AC RSP00847 Mean Expected Number 0.008 +strand -109 : -100 CCACCTCAcC Totally 3 motifs of 3 different REs have been found Description of REs found 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: histone H2A, putative |LOCUS: AT1G54690 |PROD: the same as GENE |complement(20417983..20418954) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.25 C - 0.26 1 tggtgcattt tttctaaacc gaattttaac acaaatagta atcgtcttaa 51 aaaattcacc gacttgttaa aaagaggcgg aaaaaaaaac ccgcgagaac 101 ttacaatggt gccacgctgg caatccgcgt gactcacaac taaCCAATca 151 aaatccatta tctcaacgct atatatttca gaaatcacaa cctaaaccct 201 AAATCACTCC ACTCACAAAA TCCTCAGCCA TCTCTAATCA CATTTTACAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00253 Mean Expected Number 0.002 +strand -79 : -72 AATCCGCG AC RSP00272 Mean Expected Number 0.000 -strand -69 : -79 TCACGCGGATt AC RSP00279 Mean Expected Number 0.008 -strand +2 : -7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.008 +strand -7 : +2 AAACCCTAA AC RSP01061 Mean Expected Number 0.000 -strand -64 : -72 GTGAGTCAC AC RSP01075 Mean Expected Number 0.000 -strand -81 : -90 CCaGCGTGGC AC RSP01237 Mean Expected Number 0.009 +strand -34 : -25 CgCTATATAT AC RSP01303 Mean Expected Number 0.002 +strand -8 : +2 TAAACCCTAA AC RSP01304 Mean Expected Number 0.008 +strand -8 : +2 TaAACCCTAA Totally 9 motifs of 9 different REs have been found Description of REs found 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: sugar transporter, putative |LOCUS: AT1G54730 |PROD: the same as GENE |20428077..20433790 |SUPPORT | 16 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.08 T - 0.32 C - 0.20 1 ccactaaaat acaaacgcat aaacttacta cacatgaaaa tgaaacgact 51 acatacgact gactactttg catatatata tttgtgaatt actcttcact 101 ttttctctat atataataac aacttgaaga caaagacaaa ataataaaat 151 aaccttatct cttctctata tattagttct tgagatctct ccaacaactc 201 TACTTTGTCT TTACTCAAGT ATTTCACTAA GAAAGATAGA ATCACAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01237 Mean Expected Number 0.002 +strand -96 : -87 CTCTATATAT AC RSP01237 Mean Expected Number 0.002 +strand -37 : -28 CTCTATATAT Totally 2 motifs of 1 different REs have been found Description of REs found 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: thylakoid lumen 18.3 kDa protein, SP:Q9ZVL6 |LOCUS: AT1G54780 |PROD: the same as GENE |20443101..20444826 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.32 C - 0.18 1 aatttttaaa ttacatatat ttttattctt ttgtttttga aaatagggag 51 taatagttaa tgtagttata gactatagag atgcattgtc aacaataaaa 101 cgccacgtcg cagcataatt aaaatctttt gcacaaaaat gtggttggcc 151 ttagccttgg ccctggaatt aaaacattat ccagaaaatc ttacatttcc 201 ACCAATCCTT CACTTCCTTT CACGATCCAA AACAAAACAC AAGAAAATGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.000 +strand -99 : -90 GCCACGTcGC AC RSP00073 Mean Expected Number 0.000 -strand -90 : -99 GCgACGTGGC AC RSP00125 Mean Expected Number 0.005 +strand -185 : -174 tATATTTTTATT AC RSP00961 Mean Expected Number 0.004 -strand -68 : -75 TGCAAAAG AC RSP00986 Mean Expected Number 0.001 +strand -98 : -91 CCACGTCG AC RSP01034 Mean Expected Number 0.003 -strand -93 : -99 ACGTGGC AC RSP01106 Mean Expected Number 0.000 +strand -101 : -91 ACGCCACGTCg Totally 7 motifs of 6 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT1G54790 |PROD: the same as GENE |complement(20444372..20447696) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.27 C - 0.15 1 aaggttaata taagggtgga aaaaccattt taagtatcaa atgtgtttat 51 gtgagtcatc atataaaaat acacagagat agtaagactt gcaagcgaga 101 ttcaaagcaA CAATcttgct tgtatagtgt tttcctcttt ccacaattta 151 aagcatcacc acatttaaaa agacatcgaa aaacagaaat tataaatctc 201 AAAAGCAAAT TTAAACAACA TAGCGAGAGT TCATGAATAT AACTAAGATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00430 Mean Expected Number 0.000 +strand -150 : -142 GTGAGTCAT AC RSP00792 Mean Expected Number 0.009 +strand -98 : -89 CaAAGCAACA AC RSP00871 Mean Expected Number 0.003 +strand -151 : -142 tGTGAGTCAT AC RSP01205 Mean Expected Number 0.004 +strand -176 : -167 CCATTTTAAG AC RSP01233 Mean Expected Number 0.005 -strand -81 : -87 AGCAAGA AC RSP01469 Mean Expected Number 0.005 +strand -164 : -155 TCAaATGTGT AC RSP01636 Mean Expected Number 0.002 +strand -3 : +8 CTCAAAAGCAA Totally 7 motifs of 7 different REs have been found Description of REs found 410. Group TF: BLZ1 /AC: RSP00430//OS: Hordeum vulgare /GENE: Hor2 gene/RE: GSN; hor1-box; /TF: BLZ1 ||Identical REs AC: RSP00883 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CCAAT-box binding transcription factor Hap5a |LOCUS: AT1G54830 |PROD: the same as GENE |20454849..20456681 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +490 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.29 C - 0.18 1 aatctcagac tactaggcca attcgttgtg ggcctcgtgg cccagtaata 51 ataattatta aaaaagtata aagggagcta agctaaaatg atttttttaa 101 tagattcgaa aatagaaagt aagcattacc ttttaaaaac cttctcctac 151 gaaacgccat ctgtcttcta actccttttt attaagtttc ttaaagaagg 201 TTAAAGAAAA ACCCTATAAA ATAAATATCC CAACGAAGGC GATAAAACCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.008 +strand -150 : -139 AtAATTATTAAA AC RSP00063 Mean Expected Number 0.000 +strand -169 : -160 GCCtCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -169 : -160 GCCtCGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -160 : -169 GCCACGaGGC AC RSP00153 Mean Expected Number 0.001 +strand -168 : -159 CCtCGTGGCC AC RSP00153 Mean Expected Number 0.000 -strand -161 : -170 CCACGaGGCC AC RSP00735 Mean Expected Number 0.008 -strand -105 : -112 AAAAATCA AC RSP01030 Mean Expected Number 0.006 -strand -10 : -17 AGAAACTT Totally 8 motifs of 6 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G54860 |PROD: the same as GENE |complement(20461088..20462232) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.32 C - 0.17 1 tatatgaaaa taaaaaaaaa ctatacctta tatgtatata tacatatata 51 ttttaactcg aatttgttgt tgtgcatgca tgacacgtga agaggatgtg 101 cattaataca cgtcgtcttt tggcaaaacg aaacctcctc ggtgccaagt 151 gtttgtcact ttagcaaatt cttatcaaga gaagctaatt ctagaccttt 201 AAGATACTAT AAACAAATAG AGTACAGGAC CAACAAAATT ACATTCTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.005 -strand -123 : -129 CATGCAC AC RSP00108 Mean Expected Number 0.002 +strand -126 : -119 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -119 : -126 CATGCATG AC RSP00340 Mean Expected Number 0.002 -strand -110 : -119 TtCACGTGTC AC RSP00524 Mean Expected Number 0.006 +strand -118 : -112 ACACGTG AC RSP00062 Mean Expected Number 0.000 -strand -112 : -128 CACGTG-- +5 bp --CATGCA AC RSP01035 Mean Expected Number 0.006 -strand -113 : -119 ACGTGTC AC RSP01074 Mean Expected Number 0.001 +strand -127 : -118 GCATGCATGa AC RSP01074 Mean Expected Number 0.001 -strand -118 : -127 tCATGCATGC AC RSP01104 Mean Expected Number 0.003 +strand -70 : -63 AAACCTCC AC RSP01470 Mean Expected Number 0.009 -strand -118 : -127 TCATGCATGc AC RSP01711 Mean Expected Number 0.008 -strand -7 : -16 CTAGAATTAG Totally 12 motifs of 10 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 922. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 2 & box 3) /TF: ABI3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G55170 |PROD: the same as GENE |20583990..20585642 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +255 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.27 C - 0.21 1 gcataagaaa cactttctac tgatttgcat aaatgataaa tctataagaa 51 ccaggtttaa agcccattta aagcccaaat tcccactttc tactgatttc 101 aaaatgaaga taacccattt atttatttca aagcccaaaa aaggatgact 151 ctcacacgca gacatcttta aaatgctaac cttgttcaag gcaccaattc 201 AAGGTAGAAG ACGATATCCG CTCTGAAGCA GAAGAAAAGG TTTTGACTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.009 -strand -57 : -66 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.004 -strand -57 : -66 CCTTTTTTGG AC RSP01600 Mean Expected Number 0.008 +strand -75 : -68 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: prenylated rab acceptor (PRA1) family protein |LOCUS: AT1G55190 |PROD: the same as GENE |20592064..20592866 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.31 C - 0.18 1 ctaagaatat gtctctatga tgctgactgt taaacacata taataccaat 51 attgttacca taaatgtaca gttgcaaaac aaataaaaaa ttattacaat 101 ataaagcatt tatgtatttA TTGGgcatgt aacaactttt atccatatgt 151 gacatttaca ttagcaccat cacctaatcc atagggacac tgagcaattt 201 ATAAATTATT ACAACCAACA AAAAAAAAAG CTTCGTGTCT CTCTTCTCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00550 Mean Expected Number 0.008 -strand -20 : -30 TGGATTAgGTG AC RSP00872 Mean Expected Number 0.004 +strand -55 : -46 TaTGTGACAT AC RSP01136 Mean Expected Number 0.008 -strand -47 : -53 TGTCACA AC RSP01463 Mean Expected Number 0.006 +strand -93 : -81 ATTTATgTATTTA AC RSP01640 Mean Expected Number 0.004 +strand -194 : -185 aTATGTCTCT AC RSP01641 Mean Expected Number 0.003 +strand +33 : +42 TCGTGTCTCT Totally 6 motifs of 6 different REs have been found Description of REs found 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G55255 |PROD: the same as GENE |20613786..20616314 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.15 T - 0.42 C - 0.18 1 gctattctat gttgaccgtt ttgtgctttt cttgtcagtg caaagacttt 51 gagtaattta caatcttgtc agtgcaaaga ctttgagtaa tttacaactt 101 ttatatgcaa cattaaccgg cataactttg aatttctaat gtggaatctc 151 tctcctttgt atatacaact gctttgcttc tactatcatt tttttccttt 201 GTATTGGACT AATTTAGTAG ACTGCTCCCT GAAATATTGA TTTTCTCATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.006 +strand -162 : -156 TGCAAAG AC RSP00301 Mean Expected Number 0.006 +strand -128 : -122 TGCAAAG AC RSP00653 Mean Expected Number 0.009 +strand -55 : -45 aTCTCTCTCCT AC RSP00865 Mean Expected Number 0.002 -strand -46 : -54 GGAGAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G55265 |PROD: the same as GENE |20620980..20621668 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +13 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.32 C - 0.26 1 aacaatgata tccacaatag gcccaatata atagagcgtg tgataataca 51 tcccaaacaa atctcaggct ctaaccaatt acgaacctgt gaatgtctta 101 cacgtggcaa gtcaaactac agagtcttac aaactttgaa ttcCCAATtt 151 accctcaacg tttctgttat attatgcttc tcctttctct cagtgtcagt 201 CATAGGGTCA CCAATGGCTT CTTCTTTGCT TGCACTCTTC TCCTGTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -101 : -93 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -100 : -93 CACGTGGC AC RSP00188 Mean Expected Number 0.004 +strand -46 : -37 TCAACGTtTC AC RSP00204 Mean Expected Number 0.001 +strand -102 : -93 tACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -103 : -92 TtACACGTGGCA AC RSP00355 Mean Expected Number 0.009 -strand -32 : -39 TAACAGAA AC RSP00524 Mean Expected Number 0.008 +strand -101 : -95 ACACGTG AC RSP00682 Mean Expected Number 0.002 -strand -93 : -102 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -102 : -93 TACACGTGGC AC RSP00936 Mean Expected Number 0.000 -strand -92 : -103 TGCCACGTGTaA AC RSP00938 Mean Expected Number 0.000 -strand -92 : -103 TGCCACGTGtAA AC RSP01034 Mean Expected Number 0.004 +strand -99 : -93 ACGTGGC AC RSP01255 Mean Expected Number 0.001 +strand -101 : -94 ACACGTGG AC RSP01593 Mean Expected Number 0.000 +strand -102 : -91 TACACGTGGCAa Totally 14 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G55370 |PROD: the same as GENE |20678449..20680112 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.31 C - 0.18 1 ttggaacctt gggcttaaaa aacaaaaccc acttttgaac ttacacttct 51 aaagcccaaa gttaaaatct ttggacagga actagatttt gggtgtataa 101 gtttaaagtt tgtgtcctat aataaaggcc caaaccatta cttgtcactg 151 aagagagatg gagccactga aatatcaaat ggttgtttga agataaggcc 201 AGATTGTGAG TGTTGTCTTC TTCTTCTTTC TCTATGGCTA AACTCTGAAA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G55480 |PROD: the same as GENE |20717350..20719200 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.25 C - 0.19 1 ttgccttgtc ttcttgtaga actggtcata ttgagtcaaa actcaattgt 51 ttgtgtaata aacgaatcca actgaaggga gatgcgaatt tatgaagaag 101 aaaaaaagga tcaaactaaa ggtaccattA CAATatgaca cgtggcgaaa 151 caccaagact gaagcatagc cactaaaatc atgcaaactt gtgtaatccg 201 AAACTTTGAA GCTTTTGCGA AAAACCAACC AACGTCACAT AATCGTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -63 : -55 ACACGTGGC AC RSP00056 Mean Expected Number 0.004 -strand -55 : -64 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -64 : -55 GaCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -55 : -64 GCCACGTGtC AC RSP00175 Mean Expected Number 0.001 +strand -62 : -55 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -64 : -55 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -65 : -54 TGACACGTGGCg AC RSP00340 Mean Expected Number 0.004 -strand -55 : -64 gCCACGTGTC AC RSP00936 Mean Expected Number 0.000 -strand -54 : -65 cGCCACGTGTCA AC RSP01034 Mean Expected Number 0.005 +strand -61 : -55 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -63 : -56 ACACGTGG Totally 11 motifs of 10 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NAC1 |LOCUS: AT1G56010 |PROD: transcription activator NAC1 (NAC1) |complement(20950236..20952906) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.15 1 gtctaggcaa aaatatgtga gtctgtttgg aaatgattat tgttttggat 51 agagtacgta attaataatt gatttgaaat ggaaattaaa tactaacata 101 tgattatagt ataaagttat aaaaatgata tatatagaag ttgacggctt 151 tgggtgggca attactactt aaaccaaggg tcttcctcct cggacacacc 201 CAAATGATCC CAATAATTAT TCTTCTCTTT ATCTCTCTTT TCCTCTTAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00953 Mean Expected Number 0.008 -strand -130 : -138 CAATTATTA AC RSP01687 Mean Expected Number 0.007 +strand -56 : -50 CGGCTTT Totally 2 motifs of 2 different REs have been found Description of REs found 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: tetratricopeptide repeat (TPR)-containing protein |LOCUS: AT1G56090 |PROD: the same as GENE |complement(20981360..20983014) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.27 C - 0.20 1 caaattggtc acaagtttaa tgaaaaagtt ggaaaagtgc ctcatccctg 51 acaagtgcct caaaaggaat aaaattctct aaaagtgcct aaacgtgtca 101 cattccctta aagaattacg aaaacaaata cacgggcgta aaatgcctaa 151 attaattatc gtaaaatcat atagaatcga agaagaagat tcatataatt 201 ATAATCCAAT CCAGGTCTTA ATTTACGCTT TCACTCGCCA TTATTGTTCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 -strand -142 : -151 GgCACTTGTC AC RSP00188 Mean Expected Number 0.003 +strand -111 : -102 TaAACGTGTC AC RSP00750 Mean Expected Number 0.003 +strand -45 : -34 TTATcGTAAAAT AC RSP01035 Mean Expected Number 0.006 +strand -108 : -102 ACGTGTC Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NOP56 |LOCUS: AT1G56110 |PROD: nucleolar protein Nop56, putative |complement(20988055..20990614) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.30 C - 0.20 1 cttttgatat cttgcaagga tgaccaaaaa aaaaaaaaaa aaaaaaaaaa 51 aagaaagtta acctgttgtg atgggccggg cattttataa gctagtacaa 101 ctaacacacc gttaaatggg cctggcccAT TGAatttttc aagagcagcg 151 ccatcaacag atgcgcttat taaacccctg aaaccctagt ttcgttcgtt 201 GTATATTTCT TCTCGCTCAG TAGGTCTTTA GGGTTTTAGT TTCTTCTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +28 : +36 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +36 : +28 AAACCCTAA AC RSP00960 Mean Expected Number 0.006 +strand -103 : -96 CAACTAAC AC RSP01250 Mean Expected Number 0.001 -strand -63 : -72 AAAATTCAAT AC RSP01303 Mean Expected Number 0.003 -strand +37 : +28 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: HAP5B |LOCUS: AT1G56170 |PROD: transcription factor, putative |21028429..21029548 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +354 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.25 C - 0.26 1 cacgcgcact tcacgtgttc ttcgttattc ttcgaaaccg tccgataaag 51 aaatttctgg aataacacaa cataaccaat gaaaagcata caggtggaag 101 taacgtaaaa actcccgctt tttcgacacg tgtcaactag gcggaagata 151 cgcaccacca gaaacgcttg ataaaaagct aacccgcccc aaacccattt 201 ATCTTAGGGT TTCGCGAGAT CTCACTCTCA CTGGTATGTC TGTGTTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 +strand -76 : -67 GACaCGTGTC AC RSP00143 Mean Expected Number 0.005 -strand -67 : -76 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -76 : -67 GACACGTGtC AC RSP00204 Mean Expected Number 0.003 -strand -67 : -76 GACACGTGtC AC RSP00279 Mean Expected Number 0.000 +strand +4 : +12 TTAGGGTTT AC RSP00369 Mean Expected Number 0.000 -strand +12 : +4 AAACCCTAA AC RSP00978 Mean Expected Number 0.003 +strand -191 : -182 tTCACGTGTT AC RSP01086 Mean Expected Number 0.007 -strand -92 : -101 TTTACGTTaC AC RSP01256 Mean Expected Number 0.003 +strand -75 : -68 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -68 : -75 ACACGTGT AC RSP01303 Mean Expected Number 0.001 -strand +13 : +4 gAAACCCTAA Totally 11 motifs of 8 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB1303 |LOCUS: AT1G56200 |PROD: expressed protein |21034480..21035721 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.30 C - 0.22 1 aaaacatcaa tcaactgctc gaaatcattt taaccttgag aatagtttca 51 tcctcaaaat aaattttcaa gaaaatacga ggactcgaaa cgaaaaagga 101 tgtaaatatt cccacgtgcc gtttcattAT TGGctgcaag ttgccaaaag 151 tatacatacg cgcaggtgaa atggatttat ctatctctaa agttgttcct 201 TCTTCTCTCC TTCGTCTCCC GTCAAGCTGC TTTAGCCATG GCTATGGCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 -strand -47 : -57 TAtACTTTTGG AC RSP00501 Mean Expected Number 0.007 -strand -180 : -186 CGAGCAG AC RSP01152 Mean Expected Number 0.002 +strand -90 : -81 CcCACGTGCC AC RSP01174 Mean Expected Number 0.001 +strand +13 : +23 CgTCTCCCGTC AC RSP01621 Mean Expected Number 0.007 -strand -47 : -56 TAtACTTTTG Totally 5 motifs of 5 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: copper chaperone (CCH)-related |LOCUS: AT1G56210 |PROD: the same as GENE |21039283..21040876 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.39 C - 0.20 1 actacaatgt aaataacttt tttattactt ggatgttttg tttagtagtt 51 tccgtgaata atggtatatt ttcgaaactt tagtaacttt gaggatctct 101 ttacaatttT CAATtattta aaagtgtaac caaattttta aaaccagcta 151 aaaagctcat atccccatcc tttataataa agtcataatg aattccccat 201 AATCTTTTGC ATTCCCCAAC ACACACTCCT GTCTCTCTTT CTATCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.008 -strand +42 : +34 AGAAAGAGA AC RSP00870 Mean Expected Number 0.005 +strand -84 : -75 TtTAAAAGTG AC RSP00961 Mean Expected Number 0.007 -strand +11 : +4 TGCAAAAG AC RSP01621 Mean Expected Number 0.004 -strand -73 : -82 TACACTTTTa Totally 4 motifs of 4 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dormancy/auxin associated family protein |LOCUS: AT1G56220 |PROD: the same as GENE |21047013..21048403 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.25 C - 0.31 1 cgtgagatgc atttataacc ctccgatgaa aatccacgtg gcactccgat 51 ctaaatatct cgaccatatc gggtcccaca cttccaatcc tcgaccttat 101 ccaccttacg tagacctaat atccagtcgc cacgtcacac ACAATcaacg 151 tctcagatgt acccgatcgc ctttaaatca tcgcttcctt catgaatcga 201 AGAACCTCTA CAACAACAGA TTTTAAAAAA CCCCAAAAAC TTTACATTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -168 : -159 tCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -159 : -168 GCCACGTGGa AC RSP00113 Mean Expected Number 0.001 -strand -64 : -72 TGACGTGGC AC RSP00153 Mean Expected Number 0.004 +strand -167 : -158 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -166 : -159 CACGTGGC AC RSP00188 Mean Expected Number 0.004 +strand -56 : -47 TCAACGTcTC AC RSP00189 Mean Expected Number 0.004 +strand -168 : -159 TCCACGTgGC AC RSP00214 Mean Expected Number 0.007 -strand -64 : -71 TGACGTGG AC RSP00215 Mean Expected Number 0.007 +strand -71 : -64 CCACGTCA AC RSP00248 Mean Expected Number 0.004 +strand -72 : -63 GCCACGTCAc AC RSP00313 Mean Expected Number 0.002 +strand -166 : -156 CACgTGGCACT AC RSP00340 Mean Expected Number 0.006 +strand -168 : -159 TCCACGTGgC AC RSP00395 Mean Expected Number 0.005 +strand -95 : -86 TTACGTAGAc AC RSP00471 Mean Expected Number 0.001 -strand -120 : -130 GTGTGGGaCCC AC RSP00525 Mean Expected Number 0.007 -strand -41 : -47 ACATCTG AC RSP00642 Mean Expected Number 0.004 -strand -186 : -193 TAAATGCA AC RSP00682 Mean Expected Number 0.002 -strand -159 : -168 GCCACGTGGA AC RSP00683 Mean Expected Number 0.006 -strand -159 : -168 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -167 : -160 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -160 : -167 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -168 : -159 TCCACGTGGC AC RSP00938 Mean Expected Number 0.000 -strand -158 : -169 TGCCACGTGGAt AC RSP01034 Mean Expected Number 0.003 +strand -165 : -159 ACGTGGC AC RSP01034 Mean Expected Number 0.009 -strand -66 : -72 ACGTGGC AC RSP01106 Mean Expected Number 0.001 +strand -74 : -64 tCGCCACGTCA AC RSP01167 Mean Expected Number 0.003 +strand -149 : -141 TAAATATCT AC RSP01280 Mean Expected Number 0.002 -strand -62 : -72 tGTGACGTGGC AC RSP01591 Mean Expected Number 0.000 +strand -168 : -156 TCCACGTGGCACT AC RSP01726 Mean Expected Number 0.000 -strand -158 : -169 TGCCACGTGGaT Totally 29 motifs of 26 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1) 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 449. Group TF: Alfin1 /AC: RSP00471//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS1 /TF: Alfin1 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1414. Group TF: GBF /AC: RSP01591//OS: Glycine max /GENE: SRS-4/RE: G box /TF: GBF 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G56300 |PROD: the same as GENE |complement(21082485..21083991) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.32 C - 0.25 1 aaaacccaga aattaatctt agatttgggc ttcaatgggc cttaaaaagt 51 ctctcacaca cccactaaca ataaatcaaa cgaacatgtg acatgtaata 101 tcataaaata tcttaaATTG Aaaaaaaaat atcaaaccct ctctcgaagt 151 ttccttccat ctctctccta caaagatatt tttgtttcat tctcttctcc 201 ATCCACAAAA ACCATTCCCT CTCTCAACTC TCTGAATATT TTTCTTCTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.008 +strand -42 : -32 aTCTCTCTCCT AC RSP00865 Mean Expected Number 0.003 -strand -33 : -41 GGAGAGAGA AC RSP00991 Mean Expected Number 0.009 -strand -161 : -165 GCCCA AC RSP00991 Mean Expected Number 0.009 -strand -171 : -175 GCCCA AC RSP01136 Mean Expected Number 0.004 -strand -108 : -114 TGTCACA Totally 5 motifs of 4 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 912. Group TF: p33TCP20 /AC: RSP00991//OS: Arabidopsis thaliana /GENE: CYCB1;1/RE: p33TCP20 BS2 /TF: p33TCP20 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SAR1 |LOCUS: AT1G56330 |PROD: GTP-binding protein (SAR1B) |complement(21090220..21092214) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.29 C - 0.20 1 gctagatatt agcttatttt aaaaatgtca gaaaacataa aattatcaca 51 gccgctggtt aataaattag tagatctgat ggtccaggtt ggctttcaat 101 gacatcaacc ttccactcat atgacgccac gtcactacac cagctcgatc 151 atcggccacg tgtggttcct aatataattt attttcgttt aggcaatttc 201 ACATTCGCGT TTCGAATCGA AACGAAGAAG ATCGAGATCA GTGAAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -38 : -46 ACACGTGGC AC RSP00113 Mean Expected Number 0.000 -strand -67 : -75 TGACGTGGC AC RSP00153 Mean Expected Number 0.002 -strand -38 : -47 aCACGTGGCC AC RSP00175 Mean Expected Number 0.001 -strand -39 : -46 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -37 : -46 cACACGTGGC AC RSP00214 Mean Expected Number 0.002 -strand -67 : -74 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -74 : -67 CCACGTCA AC RSP00248 Mean Expected Number 0.003 +strand -75 : -66 GCCACGTCAc AC RSP00524 Mean Expected Number 0.009 -strand -38 : -44 ACACGTG AC RSP01034 Mean Expected Number 0.006 -strand -40 : -46 ACGTGGC AC RSP01034 Mean Expected Number 0.006 -strand -69 : -75 ACGTGGC AC RSP01106 Mean Expected Number 0.000 +strand -77 : -67 ACGCCACGTCA AC RSP01152 Mean Expected Number 0.001 -strand -37 : -46 CACACGTGgC AC RSP01255 Mean Expected Number 0.002 -strand -38 : -45 ACACGTGG AC RSP01280 Mean Expected Number 0.000 -strand -65 : -75 aGTGACGTGGC Totally 15 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pyrrolidone-carboxylate peptidase family protein |LOCUS: AT1G56700 |PROD: the same as GENE |21259903..21261433 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +505 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.38 C - 0.14 1 caatgcacca ctcaattatc atcttaacat tattcgtttt aataattgaa 51 tcattgatga tgatttgttg ttattatctc tttgagaagt gacctaccac 101 ttttgttata tggaataaaa gaatacaaaa catatgtacc tcttgtctta 151 atgtcttgtt ttgtgattta tcaaacttcc gtccaaagtg gaacatgatt 201 AAAGTTAGGT TTCAATTGAT TGGATAAGGA CAAAGACTGG TTGTTGTGTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.007 +strand -22 : -17 CCGTCC AC RSP00953 Mean Expected Number 0.008 -strand -153 : -161 CAATTATTA AC RSP01453 Mean Expected Number 0.004 +strand -109 : -103 ACCTACC Totally 3 motifs of 3 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein kinase family protein |LOCUS: AT1G56720 |PROD: the same as GENE |complement(21267085..21270033) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.32 C - 0.27 1 acagttactt ctggtaacta aaacatcatc atcgtcctca catgtgaacc 51 ttacacattc ccatgatgtt ctgaataatg taattgacta attgtaatgc 101 aaggcaagac atctctcctt tgtctctctc accataaaaa ttaaagaaaa 151 caaataaaaa cacttaaaaa acctttcact acctaacact tgataactct 201 ATCTCTTCTT CTTCTCTTAT TACCTTCCAC CAGATCTCAC TCCCCACATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00745 Mean Expected Number 0.005 -strand -24 : -35 GAAAGGTTtTTT AC RSP01469 Mean Expected Number 0.005 +strand -163 : -154 TCACATGTGa AC RSP01469 Mean Expected Number 0.006 -strand -154 : -163 TCACATGTGa AC RSP01640 Mean Expected Number 0.006 +strand -83 : -74 CTtTGTCTCT AC RSP01776 Mean Expected Number 0.008 +strand -64 : -54 AaAATTAAAGA Totally 5 motifs of 4 different REs have been found Description of REs found 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: emp24/gp25L/p24 family protein |LOCUS: AT1G57620 |PROD: the same as GENE |21346386..21348423 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.37 C - 0.16 1 catttttccc gttcctaatt agtaattacc ctaatatatg tttacgccaa 51 attatagtaa tttcatgtat gaaattatca aaactagtaa attatagaaa 101 taatctgcag attttaaact cttaactaac cattttcaca ctttaatttt 151 ctctcatttg catttaacgt taaaaccggt ttaagttaac actttaagtc 201 AGATCTTAAA TCGATGCAAA AGAAAACGAT AAATCTCGTT TGGTTAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.010 -strand -35 : -42 TAAATGCA AC RSP00961 Mean Expected Number 0.003 +strand +15 : +22 TGCAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G57790 |PROD: the same as GENE |complement(21408073..21409621) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +320 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.38 C - 0.13 1 atagataact gagaaaaaaa atgaaatctg attccaaaaa agaaaagagt 51 tgaaagatag aaataaataa gaaaaaatca tcaactaata tggaagacaa 101 ttctatattt ttttcttatt taatatttta actattttca ttttaagggt 151 atttcatgta tttaactaca tatttaacat tttattttat tctggttatt 201 ATAATAGTAA TCACTCATCA CTTATACATC CAGTTGTCTC GTCTCTTCAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00574 Mean Expected Number 0.009 -strand -7 : -14 CAGAATAA Totally 1 motifs of 1 different REs have been found Description of REs found 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATATP-PRT1 |LOCUS: AT1G58080 |PROD: ATP phosphoribosyl transferase 1 (ATP-PRT1) |complement(21507979..21511118) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.29 C - 0.23 1 ttctttcacg ttttttctca taaagattcc actaaaataa gaaaagccac 51 cacaaaaaaa aaaaaaaaaa agcatggatc aggccttaag tgttaaaatg 101 gcatcaagaa tctaatagtc agaatctgcc tctcccagag tgaaagtgtg 151 ttgtgtctta ttcgttatat aattccttct ccggtctaaa agaaaccctt 201 TCACTCTCGA AAAGCCACAC AACAATGTCT CTCCTTCTCC CTACGAATTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00887 Mean Expected Number 0.003 +strand -95 : -87 AAGAATCTA AC RSP01640 Mean Expected Number 0.004 +strand +23 : +32 CaATGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G58420 |PROD: the same as GENE |21711044..21711783 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.24 C - 0.25 1 cgaaagaaaa agcatttaat gtccgcgtaa ataaagtgga ctcatccaaa 51 attttactac aacagtccgt accaccaagt caacaaaaac catgttgcac 101 tctttatttc ttcaacacgc tattatcccc cttttctcaa aATTGAcctt 151 gaacaatctc tctacctact taaaaccaac tcatgttccc aaaccaaacc 201 AAACATCATT ATTACATCAA AACAAAAAAT GGGAAAGAGA GGACAAAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01733 Mean Expected Number 0.010 +strand -178 : -173 CCGCGT Totally 1 motifs of 1 different REs have been found Description of REs found 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RXF26 |LOCUS: AT1G58430 |PROD: GDSL-motif lipase/hydrolase family protein |complement(21715230..21716768) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.31 C - 0.12 1 tgaaattaat gattttgaag gacaatcaat agtgattatt gacgcaccta 51 caagatgttg gtctattatc aaacataata aatttcataa cagagtacaa 101 agaagttgta caaATTGGtc agctatatta agaggcagaa aaaaaaaaaa 151 agtgaactac atttgttcaa gttcaataat ttatgtagag ttgttactat 201 TGGTTATATA ACACTAATCA GGAGTGAAAT TTCATCCACA AAAATTCCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.009 +strand -113 : -104 TAACAGAGTa AC RSP01012 Mean Expected Number 0.010 +strand -155 : -149 ACCTACA AC RSP01639 Mean Expected Number 0.002 -strand -174 : -183 GATTGTCCTT Totally 3 motifs of 3 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ZCF61 |LOCUS: AT1G59560 |PROD: expressed protein |21885264..21887443 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.34 C - 0.16 1 ttagtttttt aaaaggaaaa atgttattga aagaaatctt aaagttaaat 51 gactttctca aatcaattac tattggtagc agagggggag aaccaatcaa 101 gccctaattc ctttagaaaa cccttttaac aatcaaaata gtATTGGtca 151 aacaatattt ctgcattaat tagttttttc atatttagca aaaaagaatt 201 AATTAAAAAA TTCATCCCTA TTCGACTTCA CTTTCTCTCT CTGCCTGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 +strand -37 : -28 CATTAATTAG AC RSP00864 Mean Expected Number 0.001 -strand +42 : +34 AGAGAGAGA AC RSP01105 Mean Expected Number 0.002 -strand -113 : -118 CCCCCT Totally 3 motifs of 3 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PP2A-1 |LOCUS: AT1G59830 |PROD: |complement(22024185..22026138) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +180 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.31 C - 0.15 1 ttttcattat acaatagtct tgatttacat agaagtctca actcttaaga 51 ctttcaatag ttaaataact gatacacttt gaagtttagg tgtcctgtct 101 gattaaaaat ttgCCAATgt catttccttt tgaccaggct tggttaagaa 151 acaaactaaa aaaaatcact cgttaacaaa aaaaattgtg taaagaataa 201 TAAATATCCA TTTTGTGTGA TATGAGAGAA ACAAAACCAA AGACGAGCCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -69 : -75 CAAAAGG AC RSP00383 Mean Expected Number 0.010 -strand -66 : -72 GGTCAAA AC RSP00716 Mean Expected Number 0.003 +strand +32 : +40 CAAAACCAA AC RSP00872 Mean Expected Number 0.006 +strand +14 : +23 TGTGTGAtAT AC RSP01598 Mean Expected Number 0.006 +strand -83 : -76 TGTCATTT Totally 5 motifs of 5 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AT-E1 ALPHA |LOCUS: AT1G59900 |PROD: pyruvate dehydrogenase E1 component alpha subunit |22054960..22057550 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.17 T - 0.39 C - 0.18 1 tatttatttt ggtttatcca tttggttatt tatctttaat cacatttgag 51 tttgattata taatatgatt ttaagagaat atgaatatat attgactctt 101 ttatcacagg tgtcacgtga ctcacgtgag gctgtgtacg gaaaaccttc 151 ttatcctctc agagtctctt atattaggat cgctatctac tgcttcactg 201 AAATTGTCCT CTCAGTTCCT ACGCGAAGTT TTCAACAGAT TCGCCGGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00781 Mean Expected Number 0.000 +strand -80 : -71 CTCACGTGAG AC RSP00781 Mean Expected Number 0.000 -strand -71 : -80 CTCACGTGAG AC RSP01061 Mean Expected Number 0.000 -strand -76 : -84 GTGAGTCAC AC RSP01127 Mean Expected Number 0.008 -strand -1 : -20 CAGT-- ** bp --AGCG Totally 4 motifs of 3 different REs have been found Description of REs found 736. Group TF: G-box binding TF /AC: RSP00781//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 5 /TF: G-box binding TF 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 29 kDa ribonucleoprotein, chloroplast |LOCUS: AT1G60000 |PROD: the same as GENE |complement(22097234..22098291) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.25 C - 0.23 1 aatccagaaa acaaaaaatc aatggtcaaa acatacatag aaatctcaat 51 accaatctca atttattctg aaatattctt ctgaaaccag aaaccaaaga 101 aatccagacc aaaccgaaat aactaaaccg gaataaaccc cctatccagt 151 catagaaaca cttgattcta aagattgcga tagccgccga taggccaatc 201 ACTCTTTTGG CCTTATCCGA AATCTTTTTG TGGGCAGAAA CGTTTGTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.005 +strand -19 : -13 AGCCGCC AC RSP00379 Mean Expected Number 0.002 -strand +19 : +10 CGGATAaGGC AC RSP00439 Mean Expected Number 0.008 +strand -128 : -121 ATATTCTT AC RSP00574 Mean Expected Number 0.003 -strand -131 : -138 CAGAATAA AC RSP01209 Mean Expected Number 0.001 +strand +24 : +33 CTTTTTGTGG AC RSP01743 Mean Expected Number 0.000 -strand -169 : -181 GTTTTGACCATTg Totally 6 motifs of 6 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G60010 |PROD: the same as GENE |complement(22099025..22100242) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +143 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.32 C - 0.22 1 gccccaggca accacagtca aatttgcaac aatatggtta caaatcttta 51 aataatatta ttattcttat cattaatcaa ctcccaaatg acagtccaat 101 taaataatca caaaacatca taaaagtgac caaaattaaa taataACAAT 151 tgttttttgg gtttcacatg ttttataagc aaagccagtg tggtggacct 201 AACTCTTCAC GCTGTCCCGA AAAAGACTCT TCTCTTCTCT CTTCCTCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00358 Mean Expected Number 0.005 +strand -123 : -116 CAACTCCC AC RSP00447 Mean Expected Number 0.006 +strand -23 : -14 AGCAAAGCcA AC RSP01093 Mean Expected Number 0.003 +strand -27 : -17 TaTAAGCAAAG AC RSP01469 Mean Expected Number 0.007 +strand -37 : -28 TCACATGTtT AC RSP01598 Mean Expected Number 0.010 -strand -108 : -115 TGTCATTT Totally 5 motifs of 5 different REs have been found Description of REs found 343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB1220 |LOCUS: AT1G60170 |PROD: |22196438..22199040 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +235 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.29 C - 0.20 1 agcaaaccta aagagtaact tccttttgta gaaatataat tatttcaaca 51 aaagattgta tagtaagata ttttaaaacg gaaatttgca gaagcccatt 101 tactagtgtt agtttcaaag aaggcccatt aaaaaaggcc caaatATTGC 151 cggcttcgaa actcgacttt tttatagcac acaaggtttc aactgaaaac 201 ATTCCTCTTC GCCTTCCTAA GGAAAAAACA CTAGTCGCTC GCTGCTCTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00709 Mean Expected Number 0.007 +strand -164 : -156 TAATTATTT AC RSP01600 Mean Expected Number 0.008 +strand -88 : -81 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DC1 domain-containing protein |LOCUS: AT1G60420 |PROD: the same as GENE |22265573..22268324 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.35 C - 0.17 1 tgctgacttt ttagtgtttt gtatttgacc tcgtttgatg gacgaaccgg 51 aatataattg tgttggttgg tcaaccattt gtttttagca ttttctggtc 101 tttaattaat cgctaagtaa tctaattctg gattaagaag aaaaaaaaac 151 ttcaaaagag acgcttttat acaacgcttt gagcattact tggccctctc 201 AAAAGAATAC ACAGACCAGT CTTCGTGTGC TCGTAATTGG CGATTCTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.004 +strand -98 : -90 TAATTAATC AC RSP00698 Mean Expected Number 0.005 +strand -99 : -89 TtAATTAATCG AC RSP00792 Mean Expected Number 0.009 -strand -131 : -140 CCAAcCAACA Totally 3 motifs of 3 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ARPC3 |LOCUS: AT1G60430 |PROD: ARP2/3 complex 21 kDa subunit family |complement(22268056..22269667) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +320 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.35 C - 0.25 1 tttttgatgt acctaattcc agtggtcgat aagaaaccaa atttcaaata 51 aaaaaaccga gaaactcaaa aatcaaagct aagccggatt taacattggt 101 tactcccggt acgaaGCAAT gtaccacatt catggagtct tacacgtgtc 151 atccatacct ctctgtcttc ttcttcttct gttcttcatt cctttttcct 201 ACTTCGTCGA TTTTCCATTT CAATTTCTTC TTCAGCCGGC GATTAAGCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.006 +strand -60 : -51 TaCACGTGTC AC RSP00421 Mean Expected Number 0.005 +strand -145 : -139 ACCGAGA AC RSP00524 Mean Expected Number 0.007 +strand -59 : -53 ACACGTG AC RSP00524 Mean Expected Number 0.009 -strand -52 : -58 ACACGTG AC RSP00722 Mean Expected Number 0.008 +strand -173 : -167 GATAAGA AC RSP00735 Mean Expected Number 0.008 +strand -133 : -126 AAAAATCA AC RSP01035 Mean Expected Number 0.009 +strand -57 : -51 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -59 : -52 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -52 : -59 ACACGTGT Totally 9 motifs of 7 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G60870 |PROD: the same as GENE |22413137..22414159 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +240 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.33 C - 0.16 1 ttggagatga ataagttgaa tgatattcga tccaaaactt ttcgactcaa 51 tacttttaat ccattcaatt ttaggcaacc atccgtagcc atacatgtag 101 gattaaattc caacgaaaat cctaaagcaa atgacttaat tacttttttc 151 ataatgctta tttactttca tttttagaaa aaaactaaag taacggtctt 201 CATAGAAACC ATAGGTTAAA ATAAAATAAA ATAAAAGGTT TTTAGGTTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01015 Mean Expected Number 0.008 -strand -27 : -36 aAAATGAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: IRT3 |LOCUS: AT1G60960 |PROD: metal transporter, putative (IRT3) |complement(22448988..22450810) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.37 C - 0.22 1 aaaaaatgaa attacaacaa aatgtcgaca tttagttggc gtgtggctac 51 aatattcgga agaattgtat cttctatgcc aagactctaa cccgtttctc 101 aactgcaaac ttcctcacga tgtcgacatt acttgtatct ttctccaact 151 tgcttttgtc tgatttcatc atcagatgga tctgtctgat tctcatattt 201 AATTCCCATT CGTGTTTTTT CGGATTGCGA GAATCCTACG TTATTTCTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00354 Mean Expected Number 0.006 -strand +43 : +36 TAACGTAG AC RSP00559 Mean Expected Number 0.004 -strand -185 : -195 TGTAATTTCAt Totally 2 motifs of 2 different REs have been found Description of REs found 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G61065 |PROD: the same as GENE |complement(22493909..22495126) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.18 1 aagtttatag tgaatttttc ttaccactag agcacaaaaa agttgattta 51 ccaactaaat aaaattatct cttataattt catttagcaa taatcaaaat 101 aatattcgaa aagacaaaag agcatgtaaa aagcgtgcga atggaaaaca 151 aaaaattaat aacacgtgtc ctcttcgttc acaagtttcc tctttcctta 201 GCACAGTATG TTTTTTGACT TCTTCGCGTC GGCGATATTA TCCAGAAACA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00050 Mean Expected Number 0.000 +strand -39 : -28 ACaCGTGTCCTC AC RSP00359 Mean Expected Number 0.006 -strand +33 : +28 GCCGAC AC RSP00524 Mean Expected Number 0.006 +strand -39 : -33 ACACGTG AC RSP00524 Mean Expected Number 0.005 -strand -32 : -38 ACACGTG AC RSP01035 Mean Expected Number 0.005 +strand -37 : -31 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -39 : -32 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -32 : -39 ACACGTGT AC RSP01717 Mean Expected Number 0.000 -strand -30 : -41 GgACACGTGTTA Totally 8 motifs of 6 different REs have been found Description of REs found 49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ANAC025 |LOCUS: AT1G61110 |PROD: no apical meristem (NAM) family protein |22520271..22521952 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.28 C - 0.25 1 aaaaaccaaa atgaggtatg tgcgtgatgt gtagcataag aaaggcatga 51 cataaggcag ttcgaaaaaa ccctgccttt tctccaaaat ttaatgccca 101 ttggccgcta attttgggcc ctacgattag ccacgtgtaa tttcctcgtc 151 gagggaccca gttcggtact catatgctca cacaaaccta acacctattt 201 CTTCTCGCAT CTTATATGAA ACACATTCAC TCTCCAAAAT AATCTATACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -63 : -71 ACACGTGGC AC RSP00103 Mean Expected Number 0.005 -strand -178 : -187 GCACATACcT AC RSP00175 Mean Expected Number 0.001 -strand -64 : -71 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -62 : -71 tACACGTGGC AC RSP00524 Mean Expected Number 0.010 -strand -63 : -69 ACACGTG AC RSP00682 Mean Expected Number 0.002 +strand -71 : -62 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -62 : -71 TACACGTGGC AC RSP01032 Mean Expected Number 0.004 -strand -84 : -93 CCAAAATTAG AC RSP01034 Mean Expected Number 0.009 -strand -65 : -71 ACGTGGC AC RSP01255 Mean Expected Number 0.002 -strand -63 : -70 ACACGTGG Totally 10 motifs of 10 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SC3 |LOCUS: AT1G61250 |PROD: |22589574..22592570 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.33 C - 0.13 1 tttgtcttac aatggtgata atgacatcaa tgtaatgaat ctacaaattt 51 tacaactaat aaaattgaaa tattttaaag tgtaaagtac taaggaggat 101 taagaataaa ttcagataag ataaatggta attaGCAATa tagcaaaaaa 151 agaacaatta tttactaaaa agacacgctt ttgtgtcttc atataagctt 201 GTCTTCAACG TTCGGCTAAT CCTTGGTCCG TGCTAAGATC TTAGATCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.002 +strand -3 : +7 CTTGTCtTCA AC RSP01053 Mean Expected Number 0.006 +strand -86 : -78 GATAAGATA Totally 2 motifs of 2 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: S-locus protein kinase, putative |LOCUS: AT1G61380 |PROD: the same as GENE |complement(22649737..22653186) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.40 C - 0.14 1 agctcaactt cttggcttag tagaaacgag aaagttgact tatgagtacc 51 acacgttatt ttctgtggac agtaaggttg ggagattctt tgtcaaggtc 101 gtctattatt ttattatttt tgtttctctc tttgctggTC AATagggtat 151 tgtttagtac ttgtaatatt caaagaagta gtgtgaacca agatctagat 201 ATTTAATTAT CTCAGGATAC GTTAACATAA AAGTTTTTTT TTCTCTTGGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01167 Mean Expected Number 0.006 -strand +5 : -4 TAAATATCT Totally 1 motifs of 1 different REs have been found Description of REs found 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G61620 |PROD: the same as GENE |22741208..22743095 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.27 C - 0.20 1 aatacaaatc acaccaaaac ctttattcaa gattttattt tacctatctc 51 tcctagtaaa cataaccaaa aaagtggtaa taactcttgc tgaaaaaaac 101 aaatggtaat aattaggaac cgttagatta gattcatatc ggacggtaaa 151 ggctgtgata ccatcaccga cttacatgag aacgaaacac tggaaaactc 201 AATTCCCCAA TTTCTCCAAT CTGAGAAAAT AGGGTTTCCG ATTTGGATCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.008 -strand -55 : -60 CCGTCC AC RSP01233 Mean Expected Number 0.008 -strand -110 : -116 AGCAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G61667 |PROD: the same as GENE |22771328..22772160 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +11 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.07 T - 0.31 C - 0.23 1 tgtttttcaa atcattaaca tggtacaaaa attatttaaa tatatgtata 51 tttgaaataa tcacaatttt tcacaaaaca caactcattg ctaaccagct 101 catatgctaa aaaagacaac tcatttctcc actcttttga caaaaacaga 151 gcaccaaaca ttaaaccctt caaaaacaca aatctcacca tcacacgtaa 201 AAAAAGAAAA TATGTCTATG CTTCTTCTTC TTCTTCTTCT TGTCCCATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.010 -strand -143 : -150 ATTTCAAA AC RSP01261 Mean Expected Number 0.006 -strand -1 : -8 TTACGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: DNA-binding storekeeper protein-related |LOCUS: AT1G61730 |PROD: the same as GENE |complement(22796884..22798368) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.50 G - 0.08 T - 0.25 C - 0.17 1 tacataagaa aaatagagaa aatatttacc aaagcaaata ataaaaatcc 51 taaattactt tgaccaaaag aaagagataa aatattacca aagcaaaagt 101 aataaaaata ctaaattact ttgaccaaca gaaaaagaga aaaaaataat 151 taattcccta tattaaaaac cctaaaatat ctattggaag acagcaacca 201 CTTTAAACTA AAGTTAACAC CTTTATATTC CCAAACACTT TTGCCGTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.009 -strand -26 : -34 TTAGGGTTT AC RSP00284 Mean Expected Number 0.004 +strand +44 : +49 CCGTCC AC RSP00369 Mean Expected Number 0.009 +strand -34 : -26 AAACCCTAA AC RSP00383 Mean Expected Number 0.005 -strand -75 : -81 GGTCAAA AC RSP00383 Mean Expected Number 0.005 -strand -136 : -142 GGTCAAA AC RSP00861 Mean Expected Number 0.002 +strand -132 : -124 AGAAAGAGA AC RSP00874 Mean Expected Number 0.001 -strand +8 : -3 GTTTAAAGTGG AC RSP01621 Mean Expected Number 0.003 +strand +34 : +43 aACACTTTTG Totally 8 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: postsynaptic protein-related |LOCUS: AT1G61780 |PROD: the same as GENE |complement(22816280..22817806) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.29 C - 0.16 1 aggaaaaggg tatttgccgt ttaccggaaa gcctctatct ggagaagaag 51 gtctcgaagt tcttggtatc tcgctggttg taccacgtgg aacgttttta 101 ttggttgatg taccacgtgg attattacga ttcgtggcat aaaatacctg 151 tgaggctatg agttttgacg agacatatcc gactttccaa atccagaaaa 201 GGAAAAAAAA TATATTTAAA CATAGATAAA AATTTCAACA CCGATAAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00682 Mean Expected Number 0.002 +strand -119 : -110 aCCACGTGGA AC RSP00682 Mean Expected Number 0.002 +strand -89 : -80 aCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -118 : -111 CCACGTGG AC RSP00718 Mean Expected Number 0.001 +strand -88 : -81 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -81 : -88 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -111 : -118 CCACGTGG AC RSP00891 Mean Expected Number 0.007 +strand +7 : +15 AAAATATAT AC RSP00938 Mean Expected Number 0.000 +strand -120 : -109 TaCCACGTGGAA AC RSP01033 Mean Expected Number 0.007 -strand +2 : -8 CCTTTTcTGG AC RSP01767 Mean Expected Number 0.006 +strand +27 : +35 TAAAAATTT Totally 10 motifs of 6 different REs have been found Description of REs found 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT1G61870 |PROD: the same as GENE |complement(22868669..22870280) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.33 C - 0.27 1 atggtagcgc gtctgactcc agatcagaag gttgcgtgtt cgattcacgt 51 cgggttcaat tccccgaaca aatccggatc tcaacttttt taattttcgt 101 tttcatctca accgtccATT GTgaagactt ttaaaatacc catcaacggc 151 tatgattaga ttttacacaa cacaaaaacc ctaacaatcc ctaattctcc 201 AGTCTCCGTC TTCTTCTTCA TTTCACAGTC ATCTTCTTCA TCTAAAACCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -17 : -25 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -25 : -17 AAACCCTAA AC RSP00943 Mean Expected Number 0.008 +strand +18 : +28 TCATTTCACAg AC RSP01303 Mean Expected Number 0.006 +strand -26 : -17 aAAACCCTAA AC RSP01596 Mean Expected Number 0.008 -strand +28 : +18 cTGTGAAATGA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: autophagy 8c (APG8c) |LOCUS: AT1G62040 |PROD: the same as GENE |22936566..22938088 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +315 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.27 C - 0.16 1 cgacctaatt cgtaaacaaa aaaaaaatcg tataaatttt ttgttttgta 51 tcttgtaaaa taaaataaat caaccaaatt aatgagtcaa gacaaaaaag 101 ttcaacgaga accgaatgtt attctaaacc aaaccataat ccggtacaaa 151 tttccggttc tgcagcagga caaatggcaa caaaggaaag taacgatgat 201 AAGTTTGATC GAAAGTTTCA GACTTCAATA AGTTTTCAGT TTCGTGCATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 -strand -23 : -32 GCCAtTTGTC AC RSP01692 Mean Expected Number 0.005 -strand +13 : +6 TTCGATCA AC RSP01757 Mean Expected Number 0.003 +strand -115 : -108 GTCAAGAC Totally 3 motifs of 3 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G62600 |PROD: the same as GENE |23183142..23185623 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.21 T - 0.35 C - 0.17 1 agatatgtaa accggtagaa ttctggttta gaactgatta ccaaaccggt 51 ttactaacga ttgaatttcg aagcgggcca aaactgtttt gggacttcca 101 ctaccctcta gataaaacgc agcgtttaaA CAATttctca ggaatttgtt 151 tttgtttttt taacattgtg tcgtggtgtg tgtggttcat gagtttttgg 201 GCCACATATT TATAAAGAGG CCGTAGTATA TTCACCATCG TTAACGAATC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G62690 |PROD: the same as GENE |complement(23214109..23215054) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +278 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.18 1 agtcatttgt ttgatcatat aatttggcgc atgatatcat ggatataatc 51 gtataaatca ttttcataat gtactacgta cagtatccct aaataaatat 101 tctctgatgg gccttattgc taaacaATTG Ggcttagaaa aagcgtataa 151 aagtaacgat tttatcttaa ttcatgcttc agcttcactt gccccgcttt 201 ATCAGAACGA AACCCTCATA GAGCAAATCT GAGGTAAATT GGTTCTCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.008 -strand -70 : -80 CcAATTGTTTA AC RSP01577 Mean Expected Number 0.000 +strand -82 : -73 GCTAAACAAT Totally 2 motifs of 2 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G62730 |PROD: the same as GENE |complement(23232724..23234401) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +618 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.35 C - 0.19 1 taaatacgag tgtatatata tttgttcgat ataagagtgt ttggtttcgg 51 gttaatacta tcctaatcac gtttattcat taaacagttc tttacataaa 101 aacgtcgtcg tgtcatttta taacaaaacc gacttcctgt tacactgtag 151 cagaaccgac gtcgtgtaat aacattagtg gttttatatt aatcgacgac 201 GTATTTCTCT ACATTGACCC AACGCTTCTT CTCCGGCACG ATTGTTCAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01703 Mean Expected Number 0.001 +strand -45 : -36 CCGACGTCGT Totally 1 motifs of 1 different REs have been found Description of REs found 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: KNAT7 |LOCUS: AT1G62990 |PROD: homeodomain transcription factor (KNAT7) |23341030..23344353 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.32 C - 0.14 1 atctatgtaa aaataatata tggtatggcc ggaccagacc cgtgtataac 51 aaacattgtt ttaaatgtat tttgtataca aataagacaa aataatctat 101 aaacaaataa tgtatatttt tagaaaagaa tggagtgaaa aACAATtaaa 151 ggggaaagaa atcaggacag ctttatatag gttgatttca tctgacaatt 201 CTCTCTCTCT CTCTTTTTCT AATCATACGA ACACAATCTG CTTCAAGAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 -strand +19 : +10 gAAAAAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +14 : +6 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +12 : +4 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +10 : +2 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +8 : -1 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +15 : -2 aAGAGAGAGAGAGAGAA Totally 6 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NRS/ER |LOCUS: AT1G63000 |PROD: expressed protein |23346058..23347766 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.29 C - 0.20 1 tttcttaaat tcaataacaa aaatttatca ctactccaat tatctacaca 51 tgttttgctt aatttttggt aatgtcacct aaatttaaca atttcctaaa 101 atattcatga aaaaaaactc atgggtcaca aatctcaaat aagaaacgat 151 gggtggtcaa aagaaaaaaa ctaaaaagat tattgcttcc ccgagaaatt 201 GGGATAAAAA GAAGCAACAC CGATCACAAC GTCTCCCTAT ACCATCTCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.003 -strand -46 : -51 CACCCA AC RSP01006 Mean Expected Number 0.000 -strand -44 : -50 ACCACCC Totally 2 motifs of 2 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G63060 |PROD: the same as GENE |23387708..23388703 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.43 C - 0.15 1 tcttttgtgg tgtttaaaca ttgttagcca aatttattaa aaaaaaaaaa 51 attcaatcaa tggttaaggt ttaatttctg tatgtctatt tataagatgt 101 catttgaaat tttctccatt catagttaca aagatcctaa atagtctcat 151 cctcactgtg tatataatca atctttctct tcttatcttt tttttggttt 201 AAATATAATC AAATCTTTCT CTTCAAGCTT GTTAAATCCT CAGCAAATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01091 Mean Expected Number 0.008 +strand +3 : +13 ATAtAATCAAA AC RSP01250 Mean Expected Number 0.003 +strand -153 : -144 AAAATTCAAT AC RSP01604 Mean Expected Number 0.003 +strand -46 : -39 ACTGTGTA Totally 3 motifs of 3 different REs have been found Description of REs found 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G63170 |PROD: the same as GENE |23429017..23430974 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +222 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.40 C - 0.18 1 ttactcagtt ggacaaaaga ataaatttcg gtttaatatg gtttggttca 51 gtttcttacc cacccttaat ttgaatcaag ttagtgtaag tttaccatat 101 agccactgaa aaaactgaat attacatata tgtcccctaa tttctctggt 151 tgtcatttga ggagacatta aattcattac aattttgatt ttttatattc 201 ATTTTTCAAA CATCACGTTT CCCGATTTGT CCGACTCATC ATCTTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01642 Mean Expected Number 0.003 -strand -31 : -40 tAATGTCTCC Totally 1 motifs of 1 different REs have been found Description of REs found 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: C2 domain-containing protein |LOCUS: AT1G63220 |PROD: the same as GENE |23452584..23454106 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.30 C - 0.22 1 attttttgaa attatcaagt ttgacacaaa gttttgaaat tattaaaatc 51 atctaactaa gttttcaaca aagaccaact atttttcatt acactaatta 101 aggaaaagaa agctggcact gagcgttagt tacacgcgcc cacgcgctac 151 agcgatgtcc taaattcccc attatattca tatttgtcgt gctcaaaacg 201 ATCGAACAAA TCAGACAAAA GCCTCGCATC TCTCTCTCTT GGGATCTGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.006 +strand -69 : -63 ACACGCG AC RSP00864 Mean Expected Number 0.001 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +37 : +29 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ribulose-phosphate 3-epimerase, cytosolic |LOCUS: AT1G63290 |PROD: the same as GENE |complement(23475546..23477304) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.24 T - 0.35 C - 0.19 1 ttgtagataa gatgttcgac aaaatgtgta agtgaagttc ttagaagtgg 51 ttatgtatta gtttgccttg gtgtttggtg ccacgtcatc aggtttggtc 101 gtatcaagct agctgggtcg ggttgagatt cgggttaacg ggttgaccca 151 attacccatt ggtcgctttt tctgatttct tctcttctca cagtgctctc 201 ACCTAACGCA GATTCTTCTT CTCTACCATA TTCGTTGAAA CCAGAGAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -113 : -121 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 -strand -113 : -120 TGACGTGG AC RSP00215 Mean Expected Number 0.001 +strand -120 : -113 CCACGTCA AC RSP00248 Mean Expected Number 0.003 +strand -121 : -112 GCCACGTCAt AC RSP00286 Mean Expected Number 0.001 +strand -4 : +7 TCTCACCTAaC AC RSP00819 Mean Expected Number 0.004 +strand -121 : -112 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 +strand -121 : -112 GCCACGTCaT AC RSP00847 Mean Expected Number 0.003 +strand -120 : -111 CCACgTCATC AC RSP00913 Mean Expected Number 0.003 -strand -111 : -120 GATGACGTGG AC RSP00915 Mean Expected Number 0.002 -strand -111 : -120 GATGACGTGG AC RSP00916 Mean Expected Number 0.003 -strand -111 : -120 GATGACGTGG AC RSP00997 Mean Expected Number 0.002 -strand -111 : -120 GATGACGTGG AC RSP01008 Mean Expected Number 0.006 +strand +1 : +7 ACCTAAC AC RSP01034 Mean Expected Number 0.007 -strand -115 : -121 ACGTGGC AC RSP01184 Mean Expected Number 0.000 +strand -4 : +8 TCTCACCTAaCG AC RSP01275 Mean Expected Number 0.003 +strand -121 : -112 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 -strand -111 : -121 GaTGACGTGGC AC RSP01658 Mean Expected Number 0.000 -strand -111 : -122 GATGACGTGgCA Totally 18 motifs of 18 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glutathione peroxidase, putative |LOCUS: AT1G63460 |PROD: the same as GENE |23538681..23540132 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.31 C - 0.18 1 aaatttgcta aaattttata aacgcttatg tgagtgaata tgttgataaa 51 tgattatttt gatgagtact taaagctatc atcattttat agtttttgga 101 ggttttgcca aaaactaaag gattctgaaa atatatcaaa agtggcccaa 151 tagaagccca ttaagaccag ttaaaacaga gaaacgactc tatatcgaac 201 GTCACGCGCA TTACTCGCGC GTGTGACCAA GTCCCTTTCT CTTGCTTCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.004 -strand +24 : +18 ACACGCG AC RSP00530 Mean Expected Number 0.004 -strand -21 : -32 TCTgTTTTAACT AC RSP01104 Mean Expected Number 0.002 -strand -96 : -103 AAACCTCC Totally 3 motifs of 3 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protease-associated (PA) domain-containing protein |LOCUS: AT1G63690 |PROD: the same as GENE |23622041..23626059 |SUPPORT | 14 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.35 C - 0.26 1 gaaccagttt agctaaaccg gttgaatcag aagaaacgcc aaaacccggt 51 ccaatagctc gacctaacgc cgtcgttttc aaagttcctt cactctactt 101 ccttctcgct tacgtcactt tccacagatc caACAATgat atcagataaa 151 attaaaatat tcccaatata ttttctaaga atatctccct atttattttt 201 ATTTATTTAA ACTATTTTAA TCTCTTCCGT GTTTCACTCT TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.006 -strand -84 : -91 TGACGTAA AC RSP00140 Mean Expected Number 0.002 +strand -10 : +3 AtTTATTTTTATT AC RSP00400 Mean Expected Number 0.008 +strand -182 : -177 CGGTTG AC RSP00439 Mean Expected Number 0.006 -strand -17 : -24 ATATTCTT AC RSP00864 Mean Expected Number 0.006 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand +49 : +41 AGAGAGAGA AC RSP01600 Mean Expected Number 0.007 +strand -124 : -117 TTTCAAAG Totally 7 motifs of 6 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: IMP4 |LOCUS: AT1G63780 |PROD: brix domain-containing protein |complement(23668536..23671015) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.17 T - 0.37 C - 0.25 1 ttatagctca gtggtagagc gtcagtcttg taaactgaag gtccgtagtt 51 cgatcctgcg tgagggcacc tttttaccat ttttactatt ttttttcttt 101 tcctatgggc ttctttaggc ccacataata aataaacggc ccaaaatagc 151 tagctatctc cgcctcacgt tttgaatgac aaacaccttg ccgttttctc 201 AACACTTCGC TATTTTTCTT CAGTCGTCTT CTTCTTCCGG CTTCTCTCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.002 +strand -21 : -14 CAAACACC Totally 1 motifs of 1 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ISPF |LOCUS: AT1G63970 |PROD: 2C-methyl-D-erythritol 2 |complement(23742354..23744026) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.22 T - 0.25 C - 0.16 1 aggaagttta gagaaactgg aacagaaaac ctaaagcgaa gaagtgatga 51 gtaaaactcc tctacacgtg gtctttagta aacttcagtg gatatgtaac 101 atgatcgacg gtcgagagtt tatcatattt taaatgggct ttaggaagga 151 aaggcccaat aaagaaatga atatttccac cacagaatta tgaattgagt 201 AAACCAGAAA ATCGAAGAAG AACGGCAATG GCTACTTCTT CTACTCAGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00454 Mean Expected Number 0.003 +strand -108 : -98 TAtGTAACATG AC RSP00817 Mean Expected Number 0.002 +strand -138 : -129 TACACGTGGT AC RSP00837 Mean Expected Number 0.006 +strand -99 : -90 tGATCGACGG AC RSP00962 Mean Expected Number 0.009 -strand +47 : +41 TGAGTAG AC RSP01255 Mean Expected Number 0.002 +strand -137 : -130 ACACGTGG Totally 5 motifs of 5 different REs have been found Description of REs found 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: WRKY56 |LOCUS: AT1G64000 |PROD: WRKY family transcription factor |23750967..23752716 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.37 C - 0.18 1 acatttgaca tgtacatgca tttttggata tatattaata tatgattcta 51 tataatatat agatccaaaa acgttgtaaa gagatatata gctaggaaaa 101 ggaggaaaga cttaggcagt tgaacagaaa agttaggtga atatagttgg 151 cttcaatatt atacccttta actcattctt cttctttctt tcctacaaat 201 ATCCTTATAA CCTTTCTTCT CCTCTTCTCC TTCTTCCTCT TATGCAAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00250 Mean Expected Number 0.000 +strand -73 : -61 AAAAGTTAGGTgA AC RSP00254 Mean Expected Number 0.006 -strand -99 : -105 CCTTTTC AC RSP01008 Mean Expected Number 0.008 -strand -63 : -69 ACCTAAC Totally 3 motifs of 3 different REs have been found Description of REs found 243. Group TF: Myb26 /AC: RSP00250//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb2 /TF: Myb26 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G64490 |PROD: the same as GENE |23955801..23956376 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.30 C - 0.21 1 cttcatcagc acttgcttgt actttgcaat aagccaacga taatagtcga 51 tcatcaaaat aagagctatc atttcttctg agaactaaaa catgatatct 101 attaagacaa actgtcggcc catttgtcgg cccattcaca acagagattt 151 tgaattttct ctttgaaacc ctcaagtgtg tttttcttag gcttggtcga 201 TCTTTAGCCG TCTTCAACAT CAAAATCAAT GGAGGAAGAA GAAGCGAGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01218 Mean Expected Number 0.000 -strand +32 : +21 CCATTGATTTTG AC RSP01600 Mean Expected Number 0.008 -strand -33 : -40 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ribosomal protein S6 family protein |LOCUS: AT1G64510 |PROD: the same as GENE |complement(23958466..23959914) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.32 C - 0.24 1 atggtttttt ctcttcaccg gcgacgattc ttttcttata gatttgattg 51 ctccgagaac tggcttgatc gcgaagacaa ataatacaga tagaaataat 101 tgtctttaca aaacgggcct ttaacaggcC CAATaaccta aaaaggccca 151 tggtgtacaa tagaattctg actaatgtgt accatcatca tctcttatcc 201 AAATTTTACT CTCTCATCTC CTCTTTGCTT TCACAATCTC ACAACAATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.004 -strand -55 : -64 CCTTTTTAGG AC RSP01214 Mean Expected Number 0.002 -strand -55 : -64 CCTTTTTAGG AC RSP01679 Mean Expected Number 0.001 +strand -90 : -79 AAACGgGCCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1497. Group RE: JRE (Qualt. Seq.) /AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Qualt. Seq.) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: Dof-type zinc finger domain-containing protein |LOCUS: AT1G64620 |PROD: the same as GENE |24010655..24012357 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +296 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.25 C - 0.14 1 aaatgaaaaa tgacacattg tacacgttca tcaaatggga atagtattag 51 tactagtaac ctaaagattt ggtaagaatt aagaacaaac aaaaactaga 101 gaagagagag atatgtaaga agaaacacat gaataatggg ACAATtttat 151 tattagaatt aagagataaa tgaaaaagat tcgtgggacg gcgggcgcat 201 AGTTCAGAGT GTGTCAGAGT CAGACCAAAC CCTTTCTCTT ATCTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.003 -strand -48 : -56 ATAATAAAA AC RSP00722 Mean Expected Number 0.008 -strand +43 : +37 GATAAGA AC RSP00864 Mean Expected Number 0.005 +strand -98 : -90 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +50 : +42 AGAGAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT1G64670 |PROD: the same as GENE |complement(24034483..24037218) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.33 C - 0.22 1 gttttgaagt taaaaaagat attacggtat gtgctggata tgcgtggtct 51 agtgttgcaa aaaaaaagga agaagattca acggccacca aatttcatca 101 ttttagccaa caatgtatgt taaatgcgaT CAATaaattc atgcagctgc 151 catctgtttt cctctctctc ttcattaact taatttctct ctctcacgca 201 TTTTGTCTTT GCAACATCAC CACCATACAT ACATACAACT TACATACATA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 +strand -189 : -180 AAAAAAGAtA AC RSP00530 Mean Expected Number 0.002 -strand -182 : -193 TCTTTTTTAACT AC RSP00863 Mean Expected Number 0.002 -strand -34 : -42 AGAGAGGAA AC RSP00864 Mean Expected Number 0.002 -strand -7 : -15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -30 : -38 AGAGAGAGA AC RSP00880 Mean Expected Number 0.004 +strand -122 : -113 CAACGGCcAC AC RSP00889 Mean Expected Number 0.002 -strand -154 : -160 CCACGCA AC RSP00987 Mean Expected Number 0.008 +strand -57 : -48 CAGCTgCCAT Totally 8 motifs of 7 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G64770 |PROD: the same as GENE |24061102..24063224 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.30 C - 0.14 1 attagttatt cagaaaattt gaagaccaat caaaaacaaa agattaaaca 51 aaatcatggt tacttattat gtggtgataa caataacata aggacgaccc 101 aagacaactt cttatgatta taaaaaaaaa gaaaaaaaaa atcttatgat 151 cagaaaatga taatttgata agctcgttta taataaagct tgacaattct 201 GATTAACTTT CGTTGGTGGC TAAGTCCACT ACAAACTTCA TTTGTCTTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.004 -strand -138 : -146 GTAACCATG AC RSP00727 Mean Expected Number 0.003 +strand -13 : -7 GCTTGAC AC RSP01014 Mean Expected Number 0.005 -strand +44 : +35 CAAATGAAGt Totally 3 motifs of 3 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calcium-binding EF hand family protein |LOCUS: AT1G64850 |PROD: the same as GENE |complement(24100098..24101271) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.28 C - 0.27 1 gtttcgcttt cgctgccttc tctctcccat ttacatttct tcaccattaa 51 cgattaaggc ccatttgagc ccatgattca ttagcttgcg caaataaatg 101 ggccgttgac caacatataa ATTGGcccaa attcgtcacg ctcacgcctc 151 cacccccact cagatccaca tattaaaaaa aaaaaaaatc atttttgtgc 201 AATCAATCAG ACGAGAAGAA GATTATCCAT CGCCATGGGA CAAGTCTTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.005 +strand -183 : -173 TTCTCTCTCCc AC RSP00865 Mean Expected Number 0.002 -strand -174 : -182 GGAGAGAGA AC RSP00879 Mean Expected Number 0.008 -strand -189 : -195 CGAAAGC AC RSP01003 Mean Expected Number 0.009 +strand -151 : -142 ACgATTAAGG Totally 4 motifs of 4 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: G-TMT |LOCUS: AT1G64970 |PROD: expressed protein |complement(24137050..24139723) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.26 C - 0.17 1 gacttttcac taaattacaa aactaaaatg atggaagaaa aagaaaagtt 51 aaacaaaaaa aaaggagaaa aatcaaagtg ataagtggat gtagacgatt 101 ggccctttcc ccaagacctg tggcaacaga aagttttgtg gctctaaagt 151 taagaaaaat ggtccaatgt tatatatcca aagtttgatc tcacacagtc 201 ACACTGTAAC AATAATCAAA TAATCCCTGA CTTCGTCACG TTTCTTTGTA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G65220 |PROD: the same as GENE |24229774..24232633 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.13 T - 0.42 C - 0.20 1 ttatttctat ataaccatca accatgcatc ttttttcaaa gtttattctt 51 tatatgctct tttgaatttt gacattaacg taacagaact aattaaccga 101 ccctcaaccg tacttgatct taatcgaacc ggtttgggag attagggtta 151 atttcgtcat tttcgtttag taccttctcc tttttagcgt cttatgtagc 201 ATCGTCCTCT TTCTCTTGAA TTCGTATTTT TGAGTTCTCA GATTTCAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.003 +strand -120 : -113 TAACAGAA AC RSP01303 Mean Expected Number 0.003 -strand -50 : -59 TtAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -50 : -59 TtAACCCTAA AC RSP01600 Mean Expected Number 0.007 +strand -167 : -160 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PspA/IM30 family protein |LOCUS: AT1G65260 |PROD: the same as GENE |24239923..24244322 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.27 C - 0.17 1 tattaagaat caaagaatat cagtgaatta tgatcttcat tgtcagcttt 51 gtcttttcaa gagttctgat cttcagcttt gagtaatttc cgttttcaat 101 tCCAATaaaa tatgttttat gaaaaaatca atgttattca tcgaccaaaa 151 cgacgtagga tagagaaaga aaaatgggaa caacatccga gtagcctccg 201 AGACCACAAA CATCCTCCAA TAAGCCAAAA GAAGACGAGA GAAGGAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.005 -strand -34 : -44 TTCTCTaTCCT AC RSP00860 Mean Expected Number 0.010 +strand -37 : -29 AGAAAGAAA AC RSP01678 Mean Expected Number 0.008 +strand -98 : -87 CAATAAAATATg Totally 3 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G65420 |PROD: the same as GENE |complement(24301148..24302233) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +196 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.33 C - 0.17 1 agagcgagac taaaggtttt gatagttgtg agattttcaa ataatatgtg 51 gaattaccaa atttattata attgattaat cgtcctccaa aatttgtaaa 101 acttgaaatt cagaacaaaa aaaagagtag aaggagtaaa atgtcttttt 151 caacagaatg aaaatctaaa aagcttcaat gccttttgtc attgtttctc 201 AATCATCACT CATCTTCACC AATCTCCATT GATTCCTTCA AGCCAAGCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.002 -strand -185 : -195 CCTTTaGTCTC AC RSP01017 Mean Expected Number 0.007 -strand -2 : -9 AGAAACAA AC RSP01602 Mean Expected Number 0.005 +strand -4 : +4 TCTCAATC Totally 3 motifs of 3 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: transferase-related |LOCUS: AT1G65445 |PROD: the same as GENE |24319477..24320415 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.33 C - 0.16 1 tttgtttgtt cttgtaacga tccgtaccat atcttttttt attaaaaagt 51 cacatttatt atgggatcaa taatttactc tccatggatt atttcatact 101 ataatgtaca cgtacattat cataaagcca agataaaatt aaaaacgcct 151 tttactacgt gttagtctat ataatataga ttaagtctga aacccaaatc 201 ACAAACTTCA CTCAAAACCT AATTAACTTA GAGAGAAAGA GAGAGAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.006 -strand -86 : -92 GTACGTG AC RSP00861 Mean Expected Number 0.001 +strand +34 : +42 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +38 : +46 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +40 : +48 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +42 : +50 AGAGAGAGA AC RSP01260 Mean Expected Number 0.001 +strand -46 : -39 CTACGTGT AC RSP01283 Mean Expected Number 0.000 +strand +35 : +51 GAaAGAGAGAGAGAGAA AC RSP01702 Mean Expected Number 0.007 -strand -38 : -47 AACACGTAGT Totally 8 motifs of 6 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: similar to small nuclear ribonucleoprotein |LOCUS: AT1G65700 |PROD: the same as GENE |complement(24437912..24439950) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +417 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.27 C - 0.18 1 gtatcggatg aatccaaaaa atctaaactg aatccgatct gaaccccgaa 51 ccatgcatac ttggtggatt aaacagttcg gttcaggtga aaattttcag 101 aATTGTcggt ttcggataaa ataactaaac cggataaaat gttcggttcg 151 gtttgagtat ttcttttaac atttcgtagt taaaagcaac atccaaaagc 201 AAAAACACAC GCCGGAGAGT TTTCTAAGAA CAACAGTGAC GAAAAGGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.008 -strand +46 : +37 CTTtTCGTCA AC RSP00857 Mean Expected Number 0.005 +strand -166 : -157 CgATCTGAAC AC RSP00888 Mean Expected Number 0.006 +strand -184 : -176 AAAAATCTA AC RSP00985 Mean Expected Number 0.007 +strand -126 : -117 AGTTcGGTTC Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G65720 |PROD: the same as GENE |complement(24443922..24444736) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.33 C - 0.12 1 ctattgtttg cttatgtgag tataaataat gagatttaga cttaaaatag 51 ttaagtcaaa attaaataat attttggcac cttttataag aaaagaagat 101 aaaagggacc tatatgatca aatacaaaag tagaggggtt atttcataat 151 aacacgtatc ttagaaaatc tttttaatct tcttcgttca ccgaatcttc 201 TTGGGTTAGG TTTGTCTTCA AAATCGTCAG AAGAAGAAGA AGAAGTCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01288 Mean Expected Number 0.003 -strand -42 : -49 ATACGTGT AC RSP01702 Mean Expected Number 0.008 +strand -50 : -41 AACACGTATc Totally 2 motifs of 2 different REs have been found Description of REs found 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: microsomal glutathione s-transferase, putative |LOCUS: AT1G65820 |PROD: the same as GENE |24488764..24490555 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.36 C - 0.14 1 atcgggaaag aatggattgg gcccaatgtg gaaatgataa gtcgtatggg 51 cctaaatcat ttagtcgtag gcccaatatg agtttaagct ctttgatatt 101 tcagagaatg ttatTCAATt tattagtaat tttcaaatga tataaattca 151 atttattaat cacttggtta aaacttatac acgtgaaaaa atgagaaatc 201 ATTTTAGTAC ATTGTTGACC ATCTTTTTCG TATAGACTAC TATCTCTGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.005 +strand -22 : -16 ACACGTG AC RSP00974 Mean Expected Number 0.001 +strand -23 : -14 TACACGTGaA Totally 2 motifs of 2 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G65900 |PROD: the same as GENE |complement(24519509..24522111) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.32 C - 0.20 1 gtgaaatagt ggttgcatat acatttacac ttgagtgagg atgtccagtg 51 aggcaaatat tccatctgaa ttccacaatt attcttaaat caaactaaaa 101 acaaaaagta cattccaaca gaattctagc atatagaaaa agtttattta 151 tttttgccaa caacaataat aaaatatttc tccctatcac tctccactct 201 ATCTCTCTCC CTCTATGGAA AACCCACAGA TATTTGTCTT GTGAATTCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00857 Mean Expected Number 0.008 +strand -139 : -130 CCATCTGAAt AC RSP00865 Mean Expected Number 0.001 -strand +10 : +2 GGAGAGAGA AC RSP00894 Mean Expected Number 0.010 +strand +44 : +51 AATTCAAG AC RSP01678 Mean Expected Number 0.010 +strand -34 : -23 tAATAAAATATT Totally 4 motifs of 4 different REs have been found Description of REs found 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: disease resistance protein (TIR-NBS class) |LOCUS: AT1G66090 |PROD: the same as GENE |24605809..24608426 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.11 T - 0.39 C - 0.21 1 aaaattataa ttttcctgtc ttattccatt agaccattac gcgtttggca 51 taaagaggca aactcacgta aaccaatgtt gacttttctt ttttcgtttg 101 ttcttttttc ttctctaact ttgttcgtaa taagttcaaa attttgttta 151 ctttgcaatt gcaaagaaac ttctcattac attccttcac cataagcttt 201 GCCACTCCTC TATAAAAGGT TCCGTAAAAT GCTTAAACAG ACACATCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.006 +strand -41 : -35 TGCAAAG AC RSP01030 Mean Expected Number 0.006 +strand -36 : -29 AGAAACTT Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGSR2 |LOCUS: AT1G66200 |PROD: glutamine synthetase, putative |complement(24658844..24661301) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.06 T - 0.33 C - 0.19 1 actagaattt aaatatataa aatcctagaa taagtcaaca atcatattaa 51 tgactaaaaa ttaccaaaac taaattattt cattagttta aaaaaaaaac 101 aatttattat attttatata atattataat gtttgcaaaa acagagtatc 151 acgtcacctt ctctctctct ctatctctgt atcctctcat tgcactataa 201 GTACTACCAC AACCACGAAC TCTAAAGCAT CATCTCATTA ACAAAAATAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand -29 : -37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -31 : -39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -33 : -41 AGAGAGAGA AC RSP00916 Mean Expected Number 0.003 -strand -43 : -52 GGTGACGTGA AC RSP00917 Mean Expected Number 0.004 -strand -43 : -52 GGTGACGTGA AC RSP01283 Mean Expected Number 0.000 -strand -26 : -42 GAtAGAGAGAGAGAGAA AC RSP01632 Mean Expected Number 0.002 +strand +20 : +30 CTCTAAAGCAT AC RSP01636 Mean Expected Number 0.002 +strand +20 : +30 CTCTAAAGCAT AC RSP01654 Mean Expected Number 0.004 -strand -43 : -52 GGTGACGTGA AC RSP01699 Mean Expected Number 0.010 -strand -47 : -53 ACGTGAT AC RSP01711 Mean Expected Number 0.003 +strand -176 : -167 CTAGAATAAG Totally 11 motifs of 9 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: calmodulin-related protein, putative |LOCUS: AT1G66400 |PROD: the same as GENE |complement(24774238..24775034) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.31 C - 0.23 1 ttacataaat gcctcgtcaa actaataata aatgaaaatt tgcaagagag 51 tttataaagt aataaaaatc agaataatgt taagagaagc ttctctcaac 101 actcctactc acGCAATctt tcacgcgtct ttaaaaccgc gttaaaacgt 151 cacttcacca aaaaccctat ttatatccaa ctaacacttt ctcttctcac 201 AATTTCTCCT ATTTCCAAAA TCTTCTATTT CTCTCTAAAA AAATGTCGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01654 Mean Expected Number 0.008 -strand -47 : -56 AGTGACGTTT AC RSP01733 Mean Expected Number 0.007 +strand -64 : -59 CCGCGT Totally 2 motifs of 2 different REs have been found Description of REs found 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cox19 family protein |LOCUS: AT1G66590 |PROD: the same as GENE |24844786..24846073 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.27 C - 0.22 1 cccaattagt tagcaactct ctaagtttaa ttaagagaga tttggcctca 51 ttaaccatag atattagaat ggatccagta agtacatgaa actcgaaggt 101 atgggccatt atgggcctga accaaacatg aaagagctgg gataactgac 151 ctttcttttt gacatttgag catcgagcct cacagtgcaa gagttctatt 201 ATAGAACTCC TATACTAACA CCGATCAAGA GGCAAATCTC CCAACTCTTC 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLPP3 |LOCUS: AT1G66670 |PROD: |complement(24867448..24869363) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.27 C - 0.16 1 aattgttaga attggaagtt agtacttgag tttgatgttt aagattgaaa 51 cttgtaatgt gtaaatctta taaaagagta gaaaaatcat acacgttaga 101 cacaaaATTG Tacatttcca tggacgaaaa aacgacagcg ttttgaatct 151 aaggaaaaaa aaacatccag aaacagtccc atcagttgct tttcttcatc 201 CTCTTTAGCA AAAAATCTCA GAACTCAAAA AAAAAACATC CAACACCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 +strand -71 : -58 AAACGACAgCGTTT AC RSP00447 Mean Expected Number 0.001 -strand -6 : -15 AGaAAAGCAA AC RSP00734 Mean Expected Number 0.001 -strand -56 : -63 CAAAACGC AC RSP01128 Mean Expected Number 0.006 +strand -27 : -11 CAGT-- +9 bp --TGCT Totally 4 motifs of 4 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycine-rich protein |LOCUS: AT1G66820 |PROD: the same as GENE |24933703..24934214 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.34 C - 0.19 1 taacttaatc caaatctgta tttaacattt tcttgaagaa tttgtatctc 51 atgtgtatct tttatcatta aaaaaaactg ataaatagga gagaatctgt 101 agagacttaa atgggttaaa gcCCAATata tgcgacaata agcccaataa 151 atacctcaac gcatattcat cttttttctc aaatcttatc tgattttctc 201 ATCACTCATA AATTCACAAT TCAGTGATCG TCATTTGCCC AATCACAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00790 Mean Expected Number 0.002 -strand +17 : +7 GTGAATTTATG AC RSP01004 Mean Expected Number 0.000 +strand -96 : -87 ACTTAAATGG AC RSP01469 Mean Expected Number 0.007 +strand -154 : -145 TCtCATGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein kinase-related |LOCUS: AT1G66940 |PROD: the same as GENE |complement(24976691..24978454) |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.32 C - 0.24 1 aatgctgaga cctcatcaac tacgtggtag gaccgtatag agaattttta 51 gtgcttatta gagagacatt tcaaaatttt aacttggaga aaaaaacaaa 101 gaaatttcaa aagtaaactt gacatcatca catgtctacg cttctgtctc 151 ccccacttga catggtcctc aggacagtct cccacttgac atggtcctga 201 GGCTTCTTGT CTCTCTTTCT CTCTCTGTAT CTCACTAATT CATTTACTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 -strand +20 : +12 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +26 : +18 AGAGAGAGA AC RSP01259 Mean Expected Number 0.002 +strand -181 : -174 CTACGTGG AC RSP01469 Mean Expected Number 0.009 +strand -73 : -64 TCACATGTcT AC RSP01641 Mean Expected Number 0.009 +strand +5 : +14 TCTTGTCTCT AC RSP01642 Mean Expected Number 0.004 -strand -130 : -139 AAATGTCTCt Totally 6 motifs of 6 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: lactoylglutathione lyase, putative / glyoxalase I |LOCUS: AT1G67280 |PROD: the same as GENE |complement(25191942..25194357) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.42 C - 0.13 1 tttccaacat cgattccatt ttttattttt tgtaagtaag aaaaaattca 51 tttcatttta acattacaat acaaaatcta aatatataag ttccaataag 101 gcagtaatta actaattaat catttaacta ataataatta tgtctaaata 151 tcacgaatcg ttcaattttt tgtttttgtt tttttgtttt gtttttttaa 201 TGAATCTCCA AAATAAAAAA GAATAAAAAA GCTTTATCTC TAGTCTCTAC 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67350 |PROD: the same as GENE |25239090..25240447 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +490 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.34 C - 0.21 1 acttgtaact ggtatatcag tgcccagcag tctagcacta gtttagttgt 51 agccatatat ttgacagctg aataggtttg gtcaaatttt ggccacggca 101 ttccgtaaag ggaggcataa acagggtgga gtttttgtta cagaaaacgt 151 cttgtttctt tattctcagt acaaaacaac acgcagtttc tattcctatc 201 AGATTTTTGT TTTCTTCTTC ATCAACACTC GCTCTGCGCT GCGTTCGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.006 +strand -139 : -132 TGACAGCT AC RSP00713 Mean Expected Number 0.009 +strand -136 : -130 CAGCTGA Totally 2 motifs of 2 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67570 |PROD: the same as GENE |25328826..25331469 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.33 C - 0.23 1 gtaatcaggt ggtactggtc ttactctatt atatatgttc ctcatcaatc 51 atcgaccgtt aaacttcaaa cctaacccca ctttgagttg tttaatctaa 101 cggcttaaaa ccatcgtaaa ccagtaATTG Atgtttataa atttcccctc 151 ccaaatcaca ccgctaacta aatgccaaat ccctcgattc ctggatttat 201 TTCTTCAAAT TAAAAAATTC AATTTTCAGA TCAATCGGAG AAATGAATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00109 Mean Expected Number 0.009 -strand -190 : -195 CACCTG AC RSP01250 Mean Expected Number 0.002 +strand +14 : +23 AAAATTCAAT Totally 2 motifs of 2 different REs have been found Description of REs found 107. Group RE: E-site /AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: E-site /TF: unknown ||Identical REs AC: RSP00309 RSP01147 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67700 |PROD: the same as GENE |25377897..25379693 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.31 C - 0.16 1 caagaatagt attgtctttt tggtttactt tggaaatagg attgtaacag 51 gccttaaagg taagtagttt cagacatacg taaaagaaaa gagtttcaga 101 ttaccttatg aagtacggtt ctggttcggt ttaaactggt ttgaacacgt 151 ggcaggtaca agtagataag gtacgaatcc acgaaatcat catcttcccc 201 AAACCAAATA ATCTCTCGTT TCTAAACAAA CTAGTGGTGA GTGAATCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -56 : -48 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -55 : -48 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -57 : -48 aACACGTGGC AC RSP00524 Mean Expected Number 0.009 +strand -56 : -50 ACACGTG AC RSP00819 Mean Expected Number 0.003 -strand -48 : -57 GCCACGTgTT AC RSP01034 Mean Expected Number 0.005 +strand -54 : -48 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -56 : -49 ACACGTGG Totally 7 motifs of 7 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: b-keto acyl reductase, putative (GLOSSY8) |LOCUS: AT1G67730 |PROD: the same as GENE |25395123..25397273 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +216 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.29 C - 0.21 1 cactgtttcc tatgttttgt ttaccacttg gtttcctcct ctattccgct 51 tttaccatat gaaaccttgt tttgtattgc acaattcacc atgaaagcct 101 aaatttacca tttttggcaa gtaaaataat ctgtcaacat cagaaggtgc 151 caacttcaat actcaaacat cacatgaaac caaattttaa ggaagaagcc 201 AACACAAAGA CAATAAAATT AATCAAAAAT AAACAAAGGA GAGAGACAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -96 : -81 TTACCATTTTTGGCAA AC RSP00080 Mean Expected Number 0.004 -strand -81 : -96 TTGCCAAAAATGGTAA AC RSP00085 Mean Expected Number 0.005 +strand -96 : -81 TTACCATTTTTGGcAA AC RSP00085 Mean Expected Number 0.005 -strand -81 : -96 TTgCCAAAAATGGTAA AC RSP00522 Mean Expected Number 0.009 +strand -177 : -171 CCACTTG AC RSP00653 Mean Expected Number 0.001 -strand +47 : +37 gTCTCTCTCCT AC RSP00865 Mean Expected Number 0.000 +strand +38 : +46 GGAGAGAGA AC RSP01033 Mean Expected Number 0.002 +strand -93 : -84 CCATTTTTGG Totally 8 motifs of 6 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: PSBY |LOCUS: AT1G67740 |PROD: photosystem II core complex proteins psbY |complement(25397731..25398817) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.28 C - 0.13 1 ttgaggaaaa taaaatattt aaataagacc attgcagatg ccaacatatt 51 acttggattg aatattgaaa tataagtcat ttattgtctt tatgacataa 101 aaatTCAATt aggaaaaaaa atcaattgaa atttgagaag ggaagtgata 151 agaaaaagag agtaaggtga tagaatcagt ggctcaaatc acaccaaaat 201 CTCCAACTCA CTTCTCATTG GATAAGACAA CTATCAAGAA GCCTTCAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00357 Mean Expected Number 0.002 +strand +4 : +11 CAACTCAC AC RSP01250 Mean Expected Number 0.004 +strand -101 : -92 AAAATTCAAT Totally 2 motifs of 2 different REs have been found Description of REs found 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67785 |PROD: the same as GENE |complement(25419732..25420647) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.27 C - 0.25 1 tctatatggt caaagcgaca cgtggcattt atacaagaca atccaatcta 51 cggtagtaag gtgtatcttt ccgcactaga tccttcccca ataacacatc 101 ctccagggct tcatcgcgcg atctgcgact cctctctctc tctgttctga 151 gaaacgacga cgagaagaag aagatttagc tgacgaaaac tacaacaaca 201 ATGGTGAAGG TTTTGACTTA CTTTGGGATG ACATTGGCCG CTTTCGCCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.001 +strand -183 : -175 ACACGTGGC AC RSP00056 Mean Expected Number 0.005 -strand -175 : -184 GCCACgTGTC AC RSP00073 Mean Expected Number 0.004 +strand -184 : -175 GaCACGTGGC AC RSP00073 Mean Expected Number 0.004 -strand -175 : -184 GCCACGTGtC AC RSP00175 Mean Expected Number 0.002 +strand -182 : -175 CACGTGGC AC RSP00204 Mean Expected Number 0.003 +strand -184 : -175 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -185 : -174 cGACACGTGGCA AC RSP00340 Mean Expected Number 0.005 -strand -175 : -184 gCCACGTGTC AC RSP00864 Mean Expected Number 0.001 -strand -58 : -66 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -60 : -68 AGAGAGAGA AC RSP00936 Mean Expected Number 0.000 -strand -174 : -185 TGCCACGTGTCg AC RSP01032 Mean Expected Number 0.005 -strand +26 : +17 CCAAAGTAAG AC RSP01034 Mean Expected Number 0.010 +strand -181 : -175 ACGTGGC AC RSP01255 Mean Expected Number 0.003 +strand -183 : -176 ACACGTGG AC RSP01593 Mean Expected Number 0.000 +strand -184 : -173 gACACGTGGCAT Totally 15 motifs of 13 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G67860 |PROD: the same as GENE |complement(25448468..25448926) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.34 C - 0.15 1 atcttgtttt ccactttctt tccatctact tcacgaattt ttgtgatcgt 51 tgaatttttt aagacgaacg gaataagaac aaacatgtct attcaatttt 101 acgtatggtg gtggtaaaaa aaaaagaata agattcttat catatcatgg 151 atatcatatg acgaataatt gccataacaa acaaacttaa gtgaacacta 201 CGAGAATTGT ATAAATATAT ACAAACATCT GAAAGATTGT AAGCTCTTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.003 +strand -176 : -167 TCTACtTCAC AC RSP00593 Mean Expected Number 0.004 -strand -65 : -73 GAATCTTAT Totally 2 motifs of 2 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycine-rich protein |LOCUS: AT1G67870 |PROD: the same as GENE |complement(25453030..25454675) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.29 C - 0.16 1 ggattttcca cgtgaattgg actaatcatt aattaggaag aacggaatca 51 gaataaatat gtctactcaa ctttcggtat ggtggtggta gaaaagagaa 101 taagattcaa agcatattac gaattATTGC catatgggat catatctaac 151 acaaatttaa aagaacactc tactactaca gtacaaaatt gtatatatat 201 AAACACCTGA AAGATTTTAA TTACTTATCC CTATCAAAGA AACTAACACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 +strand -174 : -165 CATTAATTAG AC RSP00593 Mean Expected Number 0.004 -strand -93 : -101 GAATCTTAT AC RSP00640 Mean Expected Number 0.001 -strand -186 : -193 TCACGTGG AC RSP01734 Mean Expected Number 0.005 +strand -194 : -188 TCCACGT Totally 4 motifs of 4 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATNAP3 |LOCUS: AT1G67940 |PROD: ABC transporter family protein |25481333..25482949 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.33 C - 0.14 1 cgatagtgaa ccggtctact ttaatttctg tgtctgaatt ttgttggtta 51 tctacgaacc ggaattatca tttctggcat agtcaagtga tagatgtagt 101 catgtaggga atttgtatct ggatgtgaaa aaaaaaaaaa ACAATtcctc 151 ctctaaatct cgtgatgtca taaattatgt aaatgtcaga gattggtcct 201 AAAAGTTGGC CACTAAGTGG TGTAAGAATA ATAAATTGTC AATATCAATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00739 Mean Expected Number 0.000 +strand -152 : -141 TATCTACgAACC Totally 1 motifs of 1 different REs have been found Description of REs found 701. Group RE: Box 1 homolog (2) /AC: RSP00739//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT1G67950 |PROD: the same as GENE |complement(25482030..25484201) |SUPPORT | 6 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.33 C - 0.18 1 taggcatata tacatatgta caaagaaaga gacctcatgg atcatttggc 51 aaaaagccat cacaagacaa agaatagcta ttactctttt tgttctcttc 101 ttctttttgt tttgttcata ggACAATaca ataataggaa cttcacaatt 151 tcgttcacat gacccatatt ctcttgactc gtgaggttga aatgtaaatc 201 ACTTTAAAAT TAAAAACGTA CCTTGTCAGT TTTGAGACTC AAAAGGACTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 +strand -177 : -169 AGAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: caffeoyl-CoA 3-O-methyltransferase, putative |LOCUS: AT1G67990 |PROD: the same as GENE |25493118..25494530 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.33 C - 0.19 1 aaagattaaa taaacacctt tcagcttttt ggggacatct aatatgtgtg 51 tttcaatttt acatgcatat gcacactagt gttttccaat tccatttttt 101 ctgccaaaat tacatatcca cccaaatgat atgaccaaag ttttatttta 151 tttctcagtt aggtattact atttaaagcc aacatagaca cacatttgct 201 AACACTCAAA AGAGATTCTC ACGATCGAGC AAGAGAGAGA TGGATGGTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00416 Mean Expected Number 0.010 -strand +46 : +40 CATCCAT AC RSP00864 Mean Expected Number 0.000 +strand +32 : +40 AGAGAGAGA AC RSP01008 Mean Expected Number 0.009 -strand -37 : -43 ACCTAAC AC RSP01735 Mean Expected Number 0.002 +strand +13 : +21 AGATTCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATPIS1 |LOCUS: AT1G68000 |PROD: |25494677..25496712 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +332 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.37 C - 0.15 1 atgctactat aatgactctt catcttccta ataaaactcc tctttcaatt 51 tcaatttgca aagagggttc aaatttggat gcgaatataa cagtttatta 101 ctttgcggca aaatgtttat aatttttaaa ctttgagggt taATTGAtaa 151 attaaagata aacatcgaca tttctaaatc agaaatctcg attttatttt 201 GAATGTTCAA AAGCTGCCAG ATTGAGAATA TTTCGTCCGT CGTTGAAACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.001 -strand -89 : -96 TTTGCCGC AC RSP00838 Mean Expected Number 0.007 +strand +37 : +42 CCGTCG AC RSP01602 Mean Expected Number 0.004 -strand +27 : +20 TCTCAATC Totally 3 motifs of 3 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68160 |PROD: the same as GENE |complement(25549471..25552557) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +269 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.37 C - 0.14 1 ggaagagaat cttttctaaa attccccatt cctacttact tttatagtca 51 aaatccattt ttttccattt caactaattg tgttggaaaa taattaatat 101 tagattTCAA Ttaagtttat catcaatatg gtgaaaagtc ataaagtaat 151 gtattaataa ttttttcatt atttgtctaa aaatccttca ttggcttata 201 GCTTACAAGG CTGCTCTGTC TAATATACAG AGGACAAGAG AAAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00534 Mean Expected Number 0.003 -strand -72 : -84 ATAtTGATGATAA Totally 1 motifs of 1 different REs have been found Description of REs found 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68220 |PROD: the same as GENE |25573894..25575375 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.28 C - 0.17 1 tatacccatt taattactta ctcttaatca aatatctctc aaaatttctc 51 cactaaacat ttgtaaacca catccaaaaa ataaaaaaag agtaaccaga 101 tataatgatt agatggagac actttgACAA Ttaagtcata aatattagtg 151 ttcaaaattc taaaaaaaga gaaaaagaga aaacaaatat cagtgttata 201 AGGACACTTT AACGTTTCTT CACTTGCCCA AAGCTCTCTG AAGATAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.004 +strand -38 : -29 AAAAAAGAGA AC RSP00763 Mean Expected Number 0.001 -strand -63 : -73 TGACTTAATTG AC RSP01086 Mean Expected Number 0.003 +strand +9 : +18 TTaACGTTTC AC RSP01642 Mean Expected Number 0.003 -strand -77 : -86 AAgTGTCTCC AC RSP01712 Mean Expected Number 0.004 +strand -41 : -32 CTAAAAAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 724. Group RE: Box III /AC: RSP00763//OS: Brassica oleracea /GENE: SLG2/RE: Box III /TF: unknown ||Identical REs AC: RSP00768 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown 1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: universal stress protein (USP) family protein |LOCUS: AT1G68300 |PROD: the same as GENE |complement(25602007..25603007) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.24 C - 0.23 1 ggatatgggc ttacgagtac gttaaggatt tgaggagtag gtctgtgtaa 51 cctcgccgcc aatttggaat ccgatgagcc aataagaaca acgaggttat 101 aggctttctc tggacctgat acaagaaacc cgaaATTGGa tcaggcccat 151 cgaataattc aaaatctcca gaagaacctc gtgccttcct ctacacaatc 201 GACACGTCAT CATTCTGACT TTTCTCAAAG AAGAGAAATC AAATCACCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.007 +strand +32 : +42 AgAGAAATCAA AC RSP00460 Mean Expected Number 0.005 +strand +1 : +10 GACAcGTCAT AC RSP00698 Mean Expected Number 0.003 -strand -40 : -50 TGAATTAtTCG AC RSP00916 Mean Expected Number 0.003 -strand +11 : +2 GATGACGTGt AC RSP00997 Mean Expected Number 0.005 -strand +11 : +2 GATGACGTGT AC RSP01258 Mean Expected Number 0.005 -strand +9 : +2 TGACGTGT AC RSP01654 Mean Expected Number 0.009 -strand +11 : +2 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 -strand +11 : -1 GATGACGTGTCg Totally 8 motifs of 8 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68430 |PROD: the same as GENE |complement(25658568..25659107) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.20 1 tctttttcaa aatctcatca ataatgacac aatttggaat ttcattggaa 51 actgtgtcct tatggtccac aaaaattcca attcaaagca cacactttcg 101 agacaaagac ttgcttcaaa agaatcaaaa ggacaaagtt ttttgtgttg 151 ccaagttttg gatcctttta taatgaacct cacttgaaag caaagtttcc 201 ACATTTCCAA ATTCTATGGC TACACTGCAG AGATTCAAGT TCTTGGGGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01091 Mean Expected Number 0.009 +strand -82 : -72 AaAGAATCAAA AC RSP01631 Mean Expected Number 0.001 +strand -18 : -8 CTTGAAAGCAA AC RSP01638 Mean Expected Number 0.002 +strand -18 : -8 CTTGAAAGCAA Totally 3 motifs of 3 different REs have been found Description of REs found 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68440 |PROD: the same as GENE |25661696..25662936 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.10 T - 0.33 C - 0.29 1 tcatgagata gttacagaca cagagaatac atctgtcaga aagctgactc 51 attgtatctt atctttccca tttcctctta ccttttttcc tacgtgttgc 101 cacaaaactc tcatcttcac ccacTCAATc tccgccacgt gtactctcta 151 acccttcagt tcggtctttt taaggcttcc ccaagccttc gcatccaaat 201 CTCTCTTCTT TTTTTCTCTC TTTCTCATAA CAACAAAAAA ACAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -59 : -67 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -60 : -67 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -58 : -67 tACACGTGGC AC RSP00227 Mean Expected Number 0.008 -strand -136 : -144 AAGATAAGA AC RSP00524 Mean Expected Number 0.006 -strand -59 : -65 ACACGTG AC RSP00682 Mean Expected Number 0.000 +strand -67 : -58 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -58 : -67 TACACGTGGC AC RSP00861 Mean Expected Number 0.009 -strand +25 : +17 AGAAAGAGA AC RSP01034 Mean Expected Number 0.005 -strand -61 : -67 ACGTGGC AC RSP01053 Mean Expected Number 0.007 -strand -138 : -146 GATAAGATA AC RSP01255 Mean Expected Number 0.002 -strand -59 : -66 ACACGTGG AC RSP01260 Mean Expected Number 0.002 +strand -111 : -104 CTACGTGT Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68490 |PROD: the same as GENE |25697112..25699139 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +477 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.08 T - 0.33 C - 0.18 1 actacaatcc ctacaaataa ttcataatat atatcctttc tatatttaac 51 caaaaccaaa tcaagtttaa aaagagaaat aaaaatctca ttttccgttt 101 gatatttatt TCAATacaat taaaaaataa aaaatttgaa ttaaaaaaaa 151 aatgcctgtc tggatattat tattatcata aggttatata acatggccct 201 ATAAATTGAA CAAGGGACCT CTCCAATGGC CCCTTCTCTC GTCCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.005 -strand -126 : -137 TCTTTTTaAACT AC RSP00716 Mean Expected Number 0.006 +strand -150 : -142 CAAAACCAA Totally 2 motifs of 2 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger (B-box type) family protein |LOCUS: AT1G68520 |PROD: the same as GENE |complement(25712777..25714570) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.26 C - 0.22 1 ttaagaatag gatcaacttg aagaactcga ccaatcagaa tcgagataag 51 atctcttcat ggccctcatg gggtataagc aaccaaaaag gtgcatcaaa 101 ttttcacttt aaattataca agaagaaaaa agctcacatc gtgtgggaca 151 tgtactagcc aacaacgcct ctacacttaa cccttcaatg cctcataaaa 201 TGAAAATGTA GTCTCTCTTT TTATAACCAC TTCTCGAAAA CTGAAACCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 -strand +23 : +14 tAAAAAGAGA AC RSP00872 Mean Expected Number 0.004 +strand -59 : -50 TGTGgGACAT AC RSP01000 Mean Expected Number 0.001 -strand -50 : -59 ATGtCCCACA AC RSP01509 Mean Expected Number 0.002 +strand -171 : -163 ACCAATCAG AC RSP01601 Mean Expected Number 0.006 +strand -99 : -92 TTTCACTT Totally 5 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CUT1 |LOCUS: AT1G68530 |PROD: |complement(25716251..25718470) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.11 T - 0.33 C - 0.24 1 cttgcttttg tctagttaca actggaaatc gaagagaagt attacaaaaa 51 catttttctc gtcatttata aaaaaatgac aaaaaattaa atagagagca 101 aagcaagagc gttgggtgac gttggtctct tcattaactc ctctcatcta 151 ccccttcctc tgttcgcctt tatatccttc accttccctc tctcatcttc 201 ATTAACTCAT CTTCAAAAAT ACCCTAATCA CATTTTGTAA CAATAATACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.004 -strand -83 : -88 CACCCA AC RSP00286 Mean Expected Number 0.005 +strand -59 : -49 TCTCAtCTACC AC RSP00447 Mean Expected Number 0.004 +strand -104 : -95 AGCAAAGCAA AC RSP00773 Mean Expected Number 0.005 -strand +9 : -1 TGAGTTAATG AC RSP01233 Mean Expected Number 0.008 +strand -99 : -93 AGCAAGA AC RSP01598 Mean Expected Number 0.007 -strand -120 : -127 TGTCATTT Totally 6 motifs of 6 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68585 |PROD: the same as GENE |25760521..25761532 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.17 T - 0.41 C - 0.21 1 aacatgtctc ttgagtctct aaacttagtt ttctccaaag attaaagcaa 51 aagcaaagat gggcttcctc tgtcactagt tttgctaact catccttttc 101 ggatagcgac actcttcgtt tcccactctt ggtttggtgg tttctttagg 151 attctagatt tttgttttac ttatctttcc ttgtacaaga gactgtttct 201 ATAGGATTCT TCATTTCCTG TTTTATCTAT CTTCTCTGTG CAACGAGAGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00255 Mean Expected Number 0.001 +strand -113 : -105 ACTCATCCT AC RSP00888 Mean Expected Number 0.009 -strand -38 : -46 AAAAATCTA Totally 2 motifs of 2 different REs have been found Description of REs found 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: plastid-specific 30S ribosomal protein 3 |LOCUS: AT1G68590 |PROD: the same as GENE |complement(25761072..25761890) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.33 C - 0.21 1 tgagatcttt gaattagtcc ctcgaaaata cttgaaacag agtctgtatt 51 tttaaaagtc tacttctcaa agcttcaggt ttgtattcat gggcttataa 101 taaactctgt attcttgacc catttaatga tgggccaagt caacaaagcc 151 cataaatttg atagtcaaac tactttgaaa ctccacccaa aaatgtgacc 201 ATATCTTCCT TATCCATATT CTCACAAAAT CTCCATTGTT CTCTGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.008 +strand -166 : -157 aAACAGAGTC AC RSP01600 Mean Expected Number 0.009 -strand -21 : -28 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68660 |PROD: the same as GENE |complement(25781514..25782824) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.31 C - 0.19 1 cggtaggtcc accttcaacg tatcggtccc agaggccaga gcaactaaac 51 cagaaataga ttatttattt ataggttcga attttggttc ggtaaaccgg 101 gACAATcaga caaaaaggtt taagccttta aggctaaaac gtagcgtttt 151 gaatcggagg caacgtaaaa ttccgtaaac caccaatttc tgaatttttc 201 AACCTTATTC TTATGATTAA AATTGTTCGG TCCTGATTAT CTCTGTGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.004 +strand -186 : -177 TCAACGTaTC AC RSP00734 Mean Expected Number 0.003 -strand -50 : -57 CAAAACGC AC RSP01086 Mean Expected Number 0.007 -strand -32 : -41 TTTACGTTgC AC RSP01274 Mean Expected Number 0.004 +strand -186 : -177 TCaACGTATC AC RSP01296 Mean Expected Number 0.004 -strand -127 : -135 CTATAAATA AC RSP01453 Mean Expected Number 0.010 -strand -193 : -199 ACCTACC AC RSP01637 Mean Expected Number 0.002 +strand -75 : -65 CTTTAAgGCTA Totally 7 motifs of 7 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: myb family transcription factor |LOCUS: AT1G68670 |PROD: the same as GENE |25785745..25787737 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +262 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.28 C - 0.21 1 atcttaatta ggggagaaga aaaatggttg agttttcgtt cttatctgaa 51 aaaaaaaagc taaagagatt ggaatagtga cgtcagttcc agcccataca 101 aagagatgcg aacctataat cgaatctgat cctccgaata ttcacccatc 151 atcttcacga tattactatt ttacccttct cttccaaaag agaaaaaaac 201 ATTTTAACTC TCAAAGATTC GTTTTAGGTA CGCGACGGCC CGACCTCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01134 Mean Expected Number 0.004 +strand -115 : -106 GTTCCAGcCC AC RSP01654 Mean Expected Number 0.005 +strand -125 : -116 AGTGACGTCA Totally 2 motifs of 2 different REs have been found Description of REs found 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MutT/nudix family protein |LOCUS: AT1G68760 |PROD: the same as GENE |25832705..25833476 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.25 C - 0.18 1 tctcgttatg gcaacatcat aaagaacata tattatataa tatcatctaa 51 attttttaat aaataaaatg aaaacaagtg caatggaaaa agaaacagcg 101 ataattgtgt acagCCAATc acaccgacac ggcgacacat ttgccaacac 151 gtatataaac gcataaccga tacgacatcg ttttaaactc aaattaagtc 201 AACAAAACTA AAACACGACA AGAAAGGGTT TCACTGTGTT CGATAATAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00868 Mean Expected Number 0.006 +strand -170 : -159 TATTATATaATA AC RSP01288 Mean Expected Number 0.006 -strand -47 : -54 ATACGTGT AC RSP01458 Mean Expected Number 0.003 -strand -141 : -153 ATTaAAAAATTTA AC RSP01702 Mean Expected Number 0.009 +strand -55 : -46 AACACGTATa AC RSP01715 Mean Expected Number 0.002 +strand -56 : -45 cAACACGTATAT AC RSP01739 Mean Expected Number 0.001 -strand +5 : -8 TTgTTGACTTAAT Totally 6 motifs of 6 different REs have been found Description of REs found 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1523. Group TF: STF1/HY5 /AC: RSP01715//OS: Arabidopsis thaliana /GENE: ARF6 (At1g30330)/RE: G/A-box /TF: STF1/HY5 1546. Group TF: WRKY11 /AC: RSP01739//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLE12 |LOCUS: AT1G68795 |PROD: CLE12, CLAVATA3/ESR-Related 12 |complement(25844518..25845315) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +217 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.27 C - 0.18 1 taggttcaaa aatattatga acctatttaa gacttgcaag ctcttggtaa 51 aaagtaaaaa caaataatat accgatcata aaactgcaat ctacgacagt 101 tttgactacc gccaaagcta acaaaatatc agccagtagg caaaattttg 151 acgcaaaaat aagctggaca gttttgtaaa atggtgtaca tatgtcatat 201 GATAAAGCAT CTTGCGTTGA AAAGACAAAA TCCAACTCTC TCGCATCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -152 : -141 AAAAAGTAAAAA AC RSP00572 Mean Expected Number 0.008 +strand -11 : -4 ATATGTCA AC RSP01205 Mean Expected Number 0.004 +strand -179 : -170 CCTATTTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G68935 |PROD: the same as GENE |25925188..25926757 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +226 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.22 C - 0.22 1 gcaatcgaga aaaataaaat agtcgacagt gttcctaaca cagaaagatg 51 aacacataca ttcagaacag agttcaatca taccaagtca aagaaatata 101 caagtggATT GAgaagtctg gactattttc agacatggac agaagcagaa 151 tgtaagactt tgacgctaaa tgagtgtgag agaggatcaa gtttgtagac 201 AGCACCGGAC CACACAATCT TCCCCCAAAT CTCGCCTCCA TCGCCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00756 Mean Expected Number 0.002 -strand -21 : -28 CTCACACT AC RSP01401 Mean Expected Number 0.001 +strand -176 : -166 GACAGTGTTcC AC RSP01602 Mean Expected Number 0.004 -strand -87 : -94 TCTCAATC AC RSP01751 Mean Expected Number 0.002 -strand -93 : -101 TCCACTTGT Totally 4 motifs of 4 different REs have been found Description of REs found 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69050 |PROD: the same as GENE |25965587..25966011 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.06 T - 0.29 C - 0.23 1 aaccacactt tcacccaatt tctatttttc ttacgtttaa aaaaaaggat 51 tttcttcttt atatttatcc atactattaa ttactctatt aaaatcctca 101 cgctaagcaa cccctaattt cgttatcagc ttaaaaccct ttaaaaggaa 151 aaaaaaaaac attcaacatt ttaaaacatc aacaaaccca aacaccaatc 201 CACACACAAA ACAAGACTTG ATACATTATT ATCAAGAAGC AAGAAGCAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01205 Mean Expected Number 0.003 -strand -53 : -62 CCTTTTAAAG AC RSP01233 Mean Expected Number 0.007 +strand +38 : +44 AGCAAGA AC RSP01233 Mean Expected Number 0.007 +strand +45 : +51 AGCAAGA AC RSP01527 Mean Expected Number 0.008 +strand -22 : -11 TCAACAAACcCA AC RSP01710 Mean Expected Number 0.008 -strand -53 : -62 CCTTTTAAAG Totally 5 motifs of 4 different REs have been found Description of REs found 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1518. Group TF: RIN /AC: RSP01710//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Intermediate /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: chloroplast division protein, putative (MinE1) |LOCUS: AT1G69390 |PROD: the same as GENE |26088317..26090144 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.36 C - 0.18 1 gtcgtcattc ttctaatttc taaacttcaa acaccaaaag ttgcaaagta 51 gttttttttt gttgttttgg tttaatatta aaatagatga tacgacatcg 101 gttaggcagt tgttaaaacg ctgtgtttca agcctttaaa cgacagcgtt 151 tcttaaagtg ctcgatagcc ttttactttg taagaagagt cgtcgtaatc 201 TCATTTCTCT TTTAACTGAG ACGAAAAAGA TTCACTTCTC CGGCGAGCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.002 +strand -173 : -166 CAAACACC AC RSP00120 Mean Expected Number 0.000 +strand -63 : -50 AAACGACAgCGTTT AC RSP00530 Mean Expected Number 0.005 +strand +6 : +17 TCTcTTTTAACT Totally 3 motifs of 3 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: eukaryotic translation initiation factor 5A |LOCUS: AT1G69410 |PROD: the same as GENE |26092868..26094047 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.28 C - 0.20 1 gactttaaaa taaacagtag aataatcaaa ttatttaaga gttgattaat 51 taaatagaga atctcagagg ccgcgtaaga tttacgatct gacttttatt 101 tctttaagaa aaaacaaaaa aacgccgcac gtgtagggtc gcgtcagttg 151 cacgcgacac gtcaaataaa tctgaaccct agatcgcttt cttcagtgtt 201 CTATAAAAAC TAAACTCCAT TCGCTGACTT CGCAAAGAAG AACACTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 +strand -75 : -66 CGCACGTGTa AC RSP00247 Mean Expected Number 0.004 +strand -131 : -122 GCCgCGTAAG AC RSP00524 Mean Expected Number 0.007 -strand -67 : -73 ACACGTG AC RSP00681 Mean Expected Number 0.004 -strand -149 : -157 TAATTAATC AC RSP00817 Mean Expected Number 0.003 -strand -66 : -75 TACACGTGCg AC RSP00974 Mean Expected Number 0.001 -strand -66 : -75 TACACGTGCg AC RSP01035 Mean Expected Number 0.009 -strand -39 : -45 ACGTGTC AC RSP01192 Mean Expected Number 0.002 -strand -19 : -28 CTAGGGTTCA AC RSP01258 Mean Expected Number 0.004 -strand -37 : -44 TGACGTGT Totally 9 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NAP |LOCUS: AT1G69490 |PROD: no apical meristem (NAM) family protein |26125803..26127078 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.14 T - 0.24 C - 0.16 1 tgtttgatga ccatttgaca aaatttagta tattagaaaa aaacaatagg 51 atagggataa tataggacat tagactatta gatggacaaa atgaagtatt 101 atttaatttt CCAATgtacc aaccaataag aaagaagtga cgcacagtaa 151 acgacaaaaa gctcaagcat aaaaacccaa accttctctg ctttctaaac 201 ATTTCAAGAA CCTTGAGAAC ATCAAAAACT AACACAGAAA GAAAAAAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00024 Mean Expected Number 0.009 +strand -104 : -97 TATTATTT AC RSP01437 Mean Expected Number 0.006 +strand -156 : -148 AATAGGATA AC RSP01761 Mean Expected Number 0.000 +strand -24 : -13 CCAAACCTTCTc Totally 3 motifs of 3 different REs have been found Description of REs found 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69510 |PROD: the same as GENE |26130013..26131596 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +429 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.28 C - 0.16 1 gaataatgtg aatacaagta tataaattat aaaaccagaa ggtccagaat 51 tcaccacatt gtttaaagtc aacatgaaca ctaatagaaa catgactaag 101 gaaggactat atatggaatc tttttgtata ggaatatttg gcCCAATtaa 151 ggcccaaacc tcctctcttt ttttgaaaag aagagaatat ttgctgcgtt 201 AAGTTGAGGC ATCGTCATCG TGAAATGTGC AGCTCCGGAA ATAAATAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 -strand -28 : -37 AAAAAAGAGA AC RSP00918 Mean Expected Number 0.005 -strand -128 : -137 GTTGACTTTA AC RSP01104 Mean Expected Number 0.002 +strand -45 : -38 AAACCTCC Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G69526 |PROD: the same as GENE |26134957..26136854 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +199 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.37 C - 0.14 1 aaagacatct ctttctaggc ttgcttacat aagctctcat gtctatggag 51 ttgcttataa ttaataaaaa cacaggaaca tgtctcttag attcatccaa 101 ggtatggtga taatttgtac ctttTCAATg agatatataa ataaatgtaa 151 atgatcactc tagcttattt tatatagtag gataagtcta ttttattgat 201 ATGGATGTTC CTTGTGGAAT ATAAACTACA ATATCTATTT CAAAAAGCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.002 -strand -185 : -193 AGAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69680 |PROD: the same as GENE |26208468..26210591 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +343 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.34 C - 0.12 1 atttgaaggt tgaagtcttg aagacgatga tgatgatgat tgatgatgat 51 agcggaagaa aaaaaattaa atcttattat tatcccagtg gttttgatta 101 tctctatttg tttaaaatgg gctagataaa acagatgggc ctgggctttt 151 gttaaaaaaa actacggtat taatttaaac gatgtcgctt ggtaattctc 201 ATTCTTCTCA ATCGTGAATT TGCAGAGTGC AGACATTGTT GATTGAAGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.009 -strand -9 : -18 CCAAGCgACA AC RSP01602 Mean Expected Number 0.002 +strand +6 : +13 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATHVA22C |LOCUS: AT1G69700 |PROD: ABA-responsive protein (HVA22c) |26223901..26225487 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.31 C - 0.14 1 agaagtatat aagaccaatt aaaggaaata aatcgcaatt aatattctac 51 ttttgtttag taaggaaata aaattatcga cagtaatgag taaaattttc 101 ggtacctctt catccatttt tctttttacc taaaatttga aagtaaaaaa 151 aaagaaaaga agcgagtggt cataaaagtc caagaagtct ctgtaagtga 201 AACCTGGCCT CCACTTTTGT TTTTCCACTT CTACGGTAAG TGAAAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00940 Mean Expected Number 0.003 +strand +29 : +38 TTCTACGGTa AC RSP01621 Mean Expected Number 0.007 +strand +10 : +19 TcCACTTTTG Totally 2 motifs of 2 different REs have been found Description of REs found 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: heme oxygenase 3 (HO3) |LOCUS: AT1G69720 |PROD: the same as GENE |26230529..26233294 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +312 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.11 T - 0.30 C - 0.16 1 tattttttat ttccttatga taaacaaata tcgaatcaga gcaagtactt 51 cattgtcatg gttgactcaa aaggtcaatc acacaactaa gaaaacagaa 101 caaatctaaa ttttcgattt ttccaaaaaa tattatctga ctgatttaga 151 aaaaaaaaaa aataccaatt tatgatgttg gtaatggtaa ttgactaatt 201 GTTACAAACA AATATTTTAA GAAAAATCCC CAACCCCAGA GAAACCCTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01435 Mean Expected Number 0.002 +strand +27 : +36 TCCCCAACCc Totally 1 motifs of 1 different REs have been found Description of REs found 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69935 |PROD: the same as GENE |complement(26345464..26346789) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.33 C - 0.17 1 aaagtataaa tggtacccta tatttatgta gcttttctaa aatagccgag 51 gttttattta attatcaaaa aagtctttta agtctaaaag taaaactcgg 101 tcacgaccaa agtaaaaact acgaaacagt accttttgtt tatgtatact 151 tacaaaagta tcccaaatgt atttaattat caaaaaggtc cgttttaatt 201 ACAATCACTG AATAATCATC TGGTGTTACT CTCTCTGCTC ACAAATGGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01088 Mean Expected Number 0.001 -strand -183 : -190 GGGTACCA Totally 1 motifs of 1 different REs have been found Description of REs found 1006. Group TF: CRR1 /AC: RSP01088//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 2 /TF: CRR1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G69980 |PROD: the same as GENE |complement(26360043..26361330) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.34 C - 0.13 1 tatgaaatcg gtttaccatt caatggtaga cataggatta tgttgggatt 51 cgataggatt aattgaaact atcggggcta attttataat tctcttaggt 101 aaaaggttta cttgagaaat aatgagtagt atcggggctc ttatgtaaat 151 tatcacatct cttctgcgag ttatttttgt ttctacgaag aaaaaagaag 201 AAGAAGAAGA AACAACAAAA ATGGCTTCTC AGAGTTCTTC ACTTTTTCTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.006 -strand -108 : -119 AGAATTATaAAA AC RSP01017 Mean Expected Number 0.008 +strand +8 : +15 AGAAACAA AC RSP01017 Mean Expected Number 0.010 -strand -17 : -24 AGAAACAA AC RSP01209 Mean Expected Number 0.008 +strand +42 : +51 CTTTTTcTGG Totally 4 motifs of 3 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G70480 |PROD: the same as GENE |26565566..26567472 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +347 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.27 C - 0.23 1 aatatcttac aaacgggacg cagttttcac agtaagctaa aaacggcacg 51 caggtttcta aagagtggcg aggatttcaa cgttagctta atttttccgc 101 gctaagacca gctaaaaaac gacacgtggc aatcgtgttc cTCAATggtc 151 tctttcgtcc aagaccagaa aagagaagaa atgtggccac tctagaatcc 201 GTCGCATCTC GATTCAAAGC TATTGATAAT TTCGTCTTCT TCTTCCATGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.001 +strand -79 : -71 ACACGTGGC AC RSP00056 Mean Expected Number 0.005 -strand -71 : -80 GCCACgTGTC AC RSP00073 Mean Expected Number 0.003 +strand -80 : -71 GaCACGTGGC AC RSP00073 Mean Expected Number 0.003 -strand -71 : -80 GCCACGTGtC AC RSP00175 Mean Expected Number 0.002 +strand -78 : -71 CACGTGGC AC RSP00204 Mean Expected Number 0.003 +strand -80 : -71 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -81 : -70 cGACACGTGGCA AC RSP00340 Mean Expected Number 0.005 -strand -71 : -80 gCCACGTGTC AC RSP00936 Mean Expected Number 0.000 -strand -70 : -81 TGCCACGTGTCg AC RSP01034 Mean Expected Number 0.009 +strand -77 : -71 ACGTGGC AC RSP01255 Mean Expected Number 0.003 +strand -79 : -72 ACACGTGG Totally 11 motifs of 10 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger (Ran-binding) family protein |LOCUS: AT1G70650 |PROD: the same as GENE |26641740..26643867 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.38 C - 0.15 1 tttaacaagt tctttggttt ccaataaaaa atggctatta cattttcttg 51 taatgaagtt gcatataaat aagtctcatg ccttctaaga aattcttgca 101 cttatcgact atggttattt catagagagc aacaaaatca gtgtgtattt 151 gttaagacaa atgtttatat aagtcgtcca tgcgttgtac atttaatctt 201 AACTAATACG CATTGAGTTT CGTTGCTTTC TCGGGAAAAA TCTCTTTGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00350 Mean Expected Number 0.001 +strand -26 : -16 CGTCCATGCgT Totally 1 motifs of 1 different REs have been found Description of REs found 335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ubiquitin-conjugating enzyme family protein |LOCUS: AT1G70660 |PROD: the same as GENE |26644258..26645810 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.37 C - 0.16 1 gtgctttttt tttttttcaa taatgagata tcgacagtac aaataattct 51 caaaataata attttcgtat tatttaatta aactttacga agtcataaaa 101 aaataaatta aaattataca tttgttggaa gtggtggaga aaaagtgggg 151 ttacaaaata caaccactgt acgactagaa gcacttgacc aactctctct 201 CTTTTTTCTT CCTTCCATTT TTCACAATTC ATATCCTGTC TGATGAACAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 -strand +7 : -3 AAAAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +2 : -7 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: kinase-related |LOCUS: AT1G70690 |PROD: the same as GENE |26655676..26657287 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.28 C - 0.19 1 cattgccaaa ttccacatta tagctttaaa aaaaaaagtc tgaacgaaga 51 aagagttgca attatttagt aatttcaatg atatggaact tgcaaattgt 101 ggaaattctt aagaacgtcc ccaaccaaaa accaaaaaaa aaaaaaccaa 151 aagcatgcaa catggaacca catataagag tacccttctt tacgtcaatt 201 ATCTTTAAAG CAAGTCTTCG CTCTTCAATT TATATTTTAC CAAATCATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.004 -strand -4 : -11 TGACGTAA AC RSP00914 Mean Expected Number 0.007 -strand +49 : +40 GATGATTTGG AC RSP00915 Mean Expected Number 0.005 -strand +49 : +40 GATGATTTGG AC RSP01435 Mean Expected Number 0.004 +strand -83 : -74 TCCCCAACCA AC RSP01631 Mean Expected Number 0.002 +strand +3 : +13 CTTTAAAGCAA AC RSP01632 Mean Expected Number 0.002 +strand +3 : +13 CTTTAAAGCAA AC RSP01633 Mean Expected Number 0.002 +strand +3 : +13 CTTTAAAGCAA AC RSP01636 Mean Expected Number 0.002 +strand +3 : +13 CTTTAAAGCAA AC RSP01637 Mean Expected Number 0.002 +strand +3 : +13 CTTTAAAGCAA AC RSP01638 Mean Expected Number 0.002 +strand +3 : +13 CTTTAAAGCAA Totally 10 motifs of 10 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: C2 domain-containing protein |LOCUS: AT1G70810 |PROD: the same as GENE |26707792..26708898 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.29 C - 0.15 1 ttattaccaa agatgttcgt gagagtaacg cgtagatgag aataatatag 51 aaacaaacac ctggaaaacg aaacctatta tatagatggt ctttattttt 101 tgtttcttta ttcgctctat cgtccattga taagCCAATt tttaagtggt 151 cctcgttgaa tttgagccgg tcattgttta gaattaaaaa aaaagaaggt 201 AAAAGAGTCA GAGCCGCCTA GAGAAATCGA TCACAAATTC AGAAGAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.002 +strand +12 : +18 AGCCGCC AC RSP00036 Mean Expected Number 0.002 +strand -147 : -140 CAAACACC AC RSP00039 Mean Expected Number 0.008 -strand +41 : +31 TGAATTTGTGA AC RSP00176 Mean Expected Number 0.001 +strand +8 : +18 TcAGAGCCGCC AC RSP00438 Mean Expected Number 0.004 -strand +18 : +13 GGCGGC AC RSP00680 Mean Expected Number 0.010 +strand -1 : +9 TAAaAGAGTC AC RSP00807 Mean Expected Number 0.004 +strand +13 : +18 GCCGCC AC RSP01017 Mean Expected Number 0.005 -strand -94 : -101 AGAAACAA AC RSP01323 Mean Expected Number 0.000 +strand +8 : +18 TCAGAGCCGCC Totally 9 motifs of 9 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1213. Group RE: GCCGCC-ERE /AC: RSP01323//OS: Nicotiana tabacum /GENE: GLN2/RE: GCCGCC-ERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CLE17 |LOCUS: AT1G70895 |PROD: CLE17, putative, CLAVATA3/ESR-Related 17 (CLE17) |26731561..26732416 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +271 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.26 C - 0.18 1 attcgtaatt agtaaacaaa aagtgagata gaatggtaaa gagaagagag 51 tgctttcgaa gactcttccc tcgaataaac tcaaagaggt gacagccgtt 101 attaatacct cctgccgtac tttcttctac agaccacaca cactcttttt 151 ttgcttacga cttccgagac aaagagagaa agagagagaa aaagagaatt 201 CTTGTAAAAG CTTTTGCCTT TTAGAGGAAA GAATAGTGCC AGATCTTAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.003 -strand -50 : -59 AAAAAAGAGt AC RSP00653 Mean Expected Number 0.005 -strand -11 : -21 TTCTCTCTCtT AC RSP00861 Mean Expected Number 0.004 +strand -24 : -16 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -20 : -12 AGAGAGAGA AC RSP00879 Mean Expected Number 0.005 -strand -143 : -149 CGAAAGC AC RSP01283 Mean Expected Number 0.000 +strand -27 : -11 GAGAGAaAGAGAGAGAA Totally 6 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT1G70985 |PROD: the same as GENE |complement(26768334..26768947) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.30 C - 0.23 1 ccaatttggt taaagaagga cgaaattata cagccaagta tcataattta 51 caagacaaca agtgtatcgt agccacaaga cacgttcaat ctcaatgccc 101 ttgttagtcg tcattatTCA ATatattcat cactagtcgt ttgtcttaac 151 tcacatgaaa caacttattt taaaagccac tcacttactg atttccactc 201 AGACTCAAGA AGAAAGAAAG TCTCGAAAAT CTTCTCTCTT TCTCTTACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.002 -strand -113 : -122 TgAACGTGTC AC RSP00860 Mean Expected Number 0.002 +strand +11 : +19 AGAAAGAAA AC RSP00861 Mean Expected Number 0.002 -strand +43 : +35 AGAAAGAGA AC RSP01035 Mean Expected Number 0.007 -strand -116 : -122 ACGTGTC Totally 4 motifs of 4 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: proline-rich family protein |LOCUS: AT1G70990 |PROD: the same as GENE |complement(26770959..26771738) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.35 C - 0.20 1 acgattttat gttagatggt ccatatggga ccccttattt gaagctccaa 51 ctcacatgta actaagagcc gatttcaatt ttccctatag aatatattct 101 tcttcttctt ttgattcttg catgttgtaa agtatttttg tatcttatca 151 atagaaataa aataaaaaac aaaatttaga cagaaattta tagtcttgaa 201 GAAGTACTAG CTAGTATATC AGTCCCATGC ACCCTCTTAC CAAACCACCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.009 +strand +26 : +32 CATGCAC AC RSP00115 Mean Expected Number 0.009 +strand -50 : -40 ATAGAAATaAA AC RSP00357 Mean Expected Number 0.004 +strand -153 : -146 CAACTCAC AC RSP00495 Mean Expected Number 0.006 +strand -75 : -68 TGTAAAGT AC RSP00503 Mean Expected Number 0.002 +strand +7 : +14 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand +14 : +7 CTAGCTAG AC RSP00635 Mean Expected Number 0.001 -strand -169 : -176 GGTCCCAT AC RSP01053 Mean Expected Number 0.005 -strand -52 : -60 GATAAGATA AC RSP01201 Mean Expected Number 0.002 +strand -161 : -154 TGAAGCTC AC RSP01470 Mean Expected Number 0.008 +strand -85 : -76 TCtTGCATGT Totally 10 motifs of 9 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATMYBL2 |LOCUS: AT1G71030 |PROD: myb family transcription factor |complement(26798785..26800026) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.33 C - 0.23 1 tttggattgg tattggtaag gcaaattaaa tgcgacacac ttccacattc 51 atgattccac aaattctaat ggatttgaac aaatatggga ccaattttta 101 tttgtttcaa ctcctaaatg tgggaCCAAT taacaaggtt gatgtattct 151 tcttgttctt cctcgttcat taatagtttg attgagcatg cacgcttctc 201 TCAACCCACC AGTCCAAGTC AAACCTCCTC AAGCCATCCC CTAATCCTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.006 -strand +22 : +13 TTGACTtGGA AC RSP00635 Mean Expected Number 0.001 -strand -109 : -116 GGTCCCAT AC RSP01104 Mean Expected Number 0.005 +strand +21 : +28 AAACCTCC AC RSP01470 Mean Expected Number 0.007 -strand -147 : -156 TCATGaATGT Totally 4 motifs of 4 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G71050 |PROD: the same as GENE |complement(26806817..26807954) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +346 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.31 C - 0.14 1 gacgaaaatg atcataaaca aaattgtaaa agaaaaagat tagatggtaa 51 aagaagaatc tacacaacca taattgccat tctcaatgaa ttaactttga 101 cgcatgtgaa ttttgaggtg actcaggtga tgtggatgat aaacctctaa 151 tcccgtgaca ttgttttatt ataaacgacc gatcggacat tgttagaaaa 201 AAAGAAATTA TAACTACAAA CTCTTCTGTT TATTATTATT ATTATAGTTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.010 -strand -29 : -37 ATAATAAAA AC RSP00130 Mean Expected Number 0.000 -strand +46 : +27 tATAATAATAATAATAAAcA AC RSP00887 Mean Expected Number 0.005 +strand -147 : -139 AAGAATCTA AC RSP00915 Mean Expected Number 0.002 +strand -75 : -66 GGTGATGTGG AC RSP01469 Mean Expected Number 0.009 -strand -92 : -101 TCACATGcGT Totally 5 motifs of 5 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ribose 5-phosphate isomerase-related |LOCUS: AT1G71100 |PROD: the same as GENE |26818294..26819333 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.39 C - 0.18 1 atcatgcctc tcttctcacc atttagtcat atccaagtgg catggcctct 51 gattatgttg ggctcctgat tggtaaaata tttaatgtat taaattcata 101 ttTCAATact taaagataat cttttcaaaa ttcagaaatt tccgtatcta 151 taaaatttag cctaaccttt ttaaaatggt ctttacttct ctaaaaagaa 201 CCGTCAAATA CGAATACGAT TCTAAGTTTT TTAGTCTTTA TAGTCAGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.008 -strand -128 : -134 CCAATCA AC RSP00522 Mean Expected Number 0.003 -strand -161 : -167 CCACTTG AC RSP00840 Mean Expected Number 0.009 -strand -160 : -165 GCCACT AC RSP01509 Mean Expected Number 0.001 -strand -127 : -135 ACCAATCAG Totally 4 motifs of 4 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 785. Group RE: CAT /AC: RSP00840//OS: Arabidopsis thaliana /GENE: H4A748/RE: CAT /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: AP2 domain-containing transcription factor |LOCUS: AT1G71130 |PROD: the same as GENE |26826450..26827192 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.30 C - 0.14 1 aaatttctgc ttcttattac atagatgaag gaaaaaagag taaagcgttt 51 tttcctttag aagatgggct tcaagccatg ttgagaaatt tcatggattt 101 tactgcattt tcagctctga ggcccatacg gcccacatag gATTGGttag 151 aaaaaaatag agaagtaaat aagtaaagat gaaaagcatc agaaaaagag 201 ATTCTGAAAG AATAAAAACA TATTCTTTCT CTCAAATGCT TTCCTTTTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.003 -strand -53 : -62 AACCAATCCt Totally 1 motifs of 1 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G71170 |PROD: the same as GENE |26834331..26835761 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +4 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.27 C - 0.18 1 tgcatctttc aagcataatg ctagcttgag agaagtgaga actttgactt 51 tgtaattgga gacgaagacc agattaatac aatatgttaa taaaataaaa 101 taactaaaat caaaaaaaag aaaaagtcgg taggGCAATa tcgtcttttt 151 ccgatcgtgg tcgtttctta caagtttctt cgttcgttct ctagaaacgc 201 AGAAATGGAG ACTCAGTATC CGAAACTAAT CGAACCATCC AAGACCCGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01013 Mean Expected Number 0.009 +strand +2 : +11 gAAATGGAGA AC RSP01030 Mean Expected Number 0.006 -strand -22 : -29 AGAAACTT AC RSP01081 Mean Expected Number 0.000 +strand +30 : +41 TCgAACCATCCA AC RSP01339 Mean Expected Number 0.001 -strand -69 : -77 TACCGACTT Totally 4 motifs of 4 different REs have been found Description of REs found 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 999. Group TF: DcMYB1 /AC: RSP01081//OS: Daucus carota /GENE: DcPAL1/RE: box-L3 /TF: DcMYB1 1224. Group RE: DR1 /AC: RSP01339//OS: Arabidopsis thaliana /GENE: rd17/RE: DR1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: Rieske (2Fe-2S) domain-containing protein |LOCUS: AT1G71500 |PROD: the same as GENE |26939700..26941269 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.18 T - 0.34 C - 0.25 1 tgtcggttac tgaatttatg agcctttctc ctaaggccca cattggccca 51 actgtttaca aggcccattg gggctagttt ccaaacaaaa tatctgaaga 101 agtgaggcgt gttggctaaa tagaggccca tataaaaaaa gtgtggctac 151 cattattctt cttcttcttc gttatccact tctctctcct ttgtgtggtc 201 AAATGCATTT CCCTCCATTC TCTTACGCTT TCTCTCACTC TCGTCAATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.004 +strand -190 : -180 TGAATTTaTGA AC RSP00383 Mean Expected Number 0.008 +strand -4 : +3 GGTCAAA AC RSP00441 Mean Expected Number 0.003 +strand -66 : -57 AAaAAAGTGT AC RSP00653 Mean Expected Number 0.000 +strand -21 : -11 TTCTCTCTCCT AC RSP00790 Mean Expected Number 0.000 +strand -191 : -181 cTGAATTTATG AC RSP00865 Mean Expected Number 0.003 -strand -12 : -20 GGAGAGAGA AC RSP00934 Mean Expected Number 0.010 -strand -108 : -117 ATATTTtGTT AC RSP01215 Mean Expected Number 0.002 +strand -13 : -3 CCTTTGTGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: phosphoribosyltransferase family protein |LOCUS: AT1G71750 |PROD: the same as GENE |complement(26991465..26992822) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.31 C - 0.16 1 tttgtgtttt cgatttcgtt ctagcgccaa tttgatatac ttcaaaaaat 51 ttggcaattc caaattattt tgtaccgggt ctgtttaaca gaagacggta 101 aatagtttcg gttagtttcg gttaagctcc cgcgtttttt tACAATagca 151 attagaatca aaccctaaaa acccaaatca aaaagcttcg ttgtggaggt 201 AAGTAGGAGG AAGACGATGG CGTTAGAGAA GCACATAGAG AAGGTACTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -33 : -41 TTAGGGTTT AC RSP00355 Mean Expected Number 0.008 +strand -115 : -108 TAACAGAA AC RSP00369 Mean Expected Number 0.001 +strand -41 : -33 AAACCCTAA AC RSP01091 Mean Expected Number 0.007 +strand -49 : -39 tTAGAATCAAA AC RSP01150 Mean Expected Number 0.010 +strand -51 : -41 AATTAgAATCA AC RSP01303 Mean Expected Number 0.002 +strand -42 : -33 cAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ANAC030 |LOCUS: AT1G71930 |PROD: no apical meristem (NAM) family protein |27079802..27081619 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.39 C - 0.22 1 ggacccaaga gccattcgat ccctttctta taattaaata taacgaagct 51 tgtaataggc tttggttttg gtcccaaata caaaacttta aggttgtgcc 101 ttgtttgtct aaggttttcG CAATagcttc caaaaagaca cgcttatgtt 151 tatatacatt tcattttcct tcatatcatt ctcttctctg ccacttctcc 201 ATCTTGTTTC TTACTCATTT CTCTAACAAT TTTCCAAATT AAATACGTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.005 +strand -11 : -2 GCCACTTcTC AC RSP00716 Mean Expected Number 0.002 -strand -131 : -139 CAAAACCAA Totally 2 motifs of 2 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G71940 |PROD: the same as GENE |27082242..27083892 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +201 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.30 C - 0.20 1 tgagttaaaa aataaattta attgagaaac cctctcatcg agtaagaggt 51 ttcaattaag aagtccaagt caaaaccttc tgatccacgt agaaggtctt 101 aaaagccacc gtcaaaaatc tacaaggcca acacgtttgc cgttaaaaat 151 taatttctaa tttcttcttc ttcttcttcg tacgttaatt aaaatctgaa 201 GAAACAAAAT CGTGAAATCG ATCTCTTTAA GCATCATCTA GGGTTCATCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.002 +strand -117 : -108 TCCACGTAGa AC RSP00280 Mean Expected Number 0.006 +strand -117 : -108 TCCACGTAGA AC RSP00459 Mean Expected Number 0.006 -strand -128 : -137 TTGACTTGGA AC RSP00530 Mean Expected Number 0.004 -strand -187 : -198 TaTTTTTTAACT AC RSP00888 Mean Expected Number 0.009 +strand -87 : -79 AAAAATCTA AC RSP01192 Mean Expected Number 0.001 +strand +38 : +47 CTAGGGTTCA AC RSP01259 Mean Expected Number 0.001 -strand -109 : -116 CTACGTGG AC RSP01635 Mean Expected Number 0.001 +strand -103 : -93 CTTAAAAGCCA AC RSP01734 Mean Expected Number 0.009 +strand -117 : -111 TCCACGT Totally 9 motifs of 9 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G72020 |PROD: the same as GENE |complement(27112954..27114093) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.34 C - 0.20 1 gttcatcaaa gaaagtgaca tgaattttta ttttgacatg ttatatgatt 51 cctaagaaaa ttcccaaagt tttttttttc tgaacatttt tgtcagcttt 101 tacttaaaac aaaaatattt gaacaacaca gttaaataaa ggccttgtgt 151 aagagtaaat gggcctggcc caaaagaaga tgtcgctttg cacgtgtgat 201 ATCATCTCTC ATTTCTCAGT CTCCTCTCCT CCCCAAAACA AATTCGCCGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.007 -strand -4 : -10 ACACGTG AC RSP00974 Mean Expected Number 0.001 -strand -3 : -12 cACACGTGCA AC RSP01032 Mean Expected Number 0.008 +strand -31 : -22 CCAAAAGAAG AC RSP01152 Mean Expected Number 0.001 -strand -3 : -12 CACACGTGCa AC RSP01209 Mean Expected Number 0.006 -strand -22 : -31 CTTCTTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: deoxynucleoside kinase family |LOCUS: AT1G72040 |PROD: the same as GENE |complement(27115559..27118004) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.06 T - 0.35 C - 0.25 1 acatcaccat tttttaacat tttttcccca taacgattta ttaaaaaacg 51 tattaatccc ataatcatat cttctaatta attaaataat taaccacacc 101 acaaaattga aattaatgat tttaaTCAAT aaaattaaaa accctaaaac 151 gcaactttct ctcttcttct tcctctgtct ttgcgccaaa ccaaaaccca 201 CACAAAAGCC CTCTTTTTTG TTATCCCCTT CTCTCTCTGA AACTAGGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.006 -strand -54 : -62 TTAGGGTTT AC RSP00369 Mean Expected Number 0.006 +strand -62 : -54 AAACCCTAA AC RSP00741 Mean Expected Number 0.009 -strand -178 : -189 AAAAtGTTAAAA AC RSP00864 Mean Expected Number 0.005 -strand +38 : +30 AGAGAGAGA AC RSP01702 Mean Expected Number 0.007 +strand -156 : -147 AAaACGTATT Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G72070 |PROD: the same as GENE |complement(27122289..27123370) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.15 T - 0.23 C - 0.16 1 tttaattttt aaatcagaat atagtttaca caaaacaata taggttttaa 51 cacatataat gttatatcgt cctagctagt aacaaaaccg agaacaaagg 101 aacacataaa tataaaaata aataaataaa caccgacatg acatcggaat 151 gtgaatcgga taataggata tccaatagac cataccgtcg ggtacaagat 201 AAAAAAGGGT CCTTCACCAA AGTCCCACAA AAAGGGAAAG AAAAAAAGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00503 Mean Expected Number 0.002 +strand -129 : -122 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -122 : -129 CTAGCTAG AC RSP00838 Mean Expected Number 0.005 +strand -16 : -11 CCGTCG AC RSP01215 Mean Expected Number 0.002 -strand +35 : +25 CCTTTTTGTGG AC RSP01437 Mean Expected Number 0.006 +strand -39 : -31 AATAGGATA AC RSP01458 Mean Expected Number 0.002 -strand -187 : -199 ATTTAAAAATTaA AC RSP01463 Mean Expected Number 0.009 -strand -82 : -94 ATTTtTATATTTA Totally 7 motifs of 6 different REs have been found Description of REs found 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G72170 |PROD: the same as GENE |27159997..27161338 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.26 C - 0.19 1 ttttccaaaa caatactttt agaaccatat aacaataatc taaaccaaac 51 agaaaactca aaactcgatc agtttttttt tttgttttaa acagccttag 101 tggCCAATgt ttacggccca tcataacaac atattgggcc taagttaagg 151 ccacgtttat tgtgggctct atagatcggt aaagtcaaga aaaggaaatc 201 ACGAACAACG GAAGAACAAA ACTCTGAGCG AATCAATCAA TCGGAAAAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.002 -strand -87 : -97 GTAAaCATTGG AC RSP01034 Mean Expected Number 0.005 -strand -45 : -51 ACGTGGC Totally 2 motifs of 2 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G72175 |PROD: the same as GENE |27161537..27163219 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.25 C - 0.24 1 tctatctctc tcccagtggt tttgaacaag tgaatacaaa aatgttgcat 51 caatcaccca ttctattttt tcaacctcaa caaggatcat catgccaacg 101 acgtcgtttt catgtgttga aaattttcaa accggaaata accgagaggg 151 tcccacaaga gcaataataa tattaaaaaa atatcgaacc aatcagagtt 201 CCGATGGACC GCCATAGTCA CCGACTAAAA AAACCAGCGA CCACGTAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00131 Mean Expected Number 0.008 -strand -83 : -89 AACACAT AC RSP00857 Mean Expected Number 0.002 -strand +7 : -3 CCATCgGAAC AC RSP00865 Mean Expected Number 0.001 -strand -188 : -196 GGAGAGAGA AC RSP01509 Mean Expected Number 0.002 +strand -13 : -5 ACCAATCAG Totally 4 motifs of 4 different REs have been found Description of REs found 129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G72220 |PROD: the same as GENE |complement(27187943..27189492) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +201 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.30 C - 0.20 1 ttttttcttt tgcagtctca atataaattt tatattataa gtctaccgaa 51 gctcgatggc caaggccaac agaaacataa actttactta aatcttcgaa 101 agccaaagag tcaaaagctc aaaggtaaaa tatggctttc atgactacga 151 ctcttcacca attaaacaat tagaagacgc ttcaacttct ctcacagaac 201 AAGTCAACAA CTAAGATGAG AAGAAATTTT CATCTTTCTC TATGTTTAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.000 -strand -28 : -38 CTAATTGTTTA AC RSP00879 Mean Expected Number 0.008 +strand -104 : -98 CGAAAGC AC RSP00961 Mean Expected Number 0.004 -strand -187 : -194 TGCAAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: plastocyanin-like domain-containing protein |LOCUS: AT1G72230 |PROD: the same as GENE |27191728..27192906 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.39 C - 0.15 1 gtttgttcat ctgcttttgg tttggtccat tatattgaat cattaagcga 51 attttgatga tacattgtga ctactttggg ttacatcatc atttatcttt 101 tacaaagggt ttttgagtgt gactttatga tgtgtcacca aacctcttat 151 gacccattct tacggtgtag caacatttca tttgttgagt atgtctaaag 201 TTAGAGCAGA AGAGGAACAA GTCCTTATCT CCAAATATGA AAAAAAGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.010 -strand -97 : -104 TGTAAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G72340 |PROD: the same as GENE |27240543..27242274 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.39 C - 0.13 1 tgatcagcta atttaatttt agaatatttt gtacttccat tccatggcat 51 gtcatatgaa gatatgaaaa ttagtaaatt tattgggctt ataaatgggc 101 cttatattat taatgggcct tatatttatt tttcatatga tatttctgga 151 gaaagcgaca gtatattatc ttcaattttt ccattttgaa gaattttctc 201 AAGAAAAAAA AAAATCAATG TGGAGAAGAT CACCGTCGTT TATTCTCGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.004 +strand -155 : -146 GgCATGTCAT AC RSP00838 Mean Expected Number 0.005 +strand +33 : +38 CCGTCG AC RSP01014 Mean Expected Number 0.008 +strand -148 : -139 CAtATGAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: auxin-responsive protein-related |LOCUS: AT1G72430 |PROD: the same as GENE |complement(27268573..27269292) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.31 C - 0.28 1 aaaagaaaga aaaaacaatg ggcaaaaaac gatactagtt ttgccattta 51 tgtcctcatc tctcttagct gttatgcatc aatcggtggg tcatgcacct 101 atacgttctc tctctatctc acTCAATata tatacacgaa ccttcctcgt 151 tatttcctcc caagaacatc tctcaaacat tcctctcttc ttcttccaat 201 ATTTTGATCC CCACACACAC TCACATCAAC ACATATAAAT CTCCTCGTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00187 Mean Expected Number 0.006 -strand -112 : -116 CCACC AC RSP00860 Mean Expected Number 0.001 +strand -197 : -189 AGAAAGAAA AC RSP00863 Mean Expected Number 0.005 -strand -13 : -21 AGAGAGGAA AC RSP00864 Mean Expected Number 0.005 -strand -86 : -94 AGAGAGAGA AC RSP00871 Mean Expected Number 0.001 +strand -116 : -107 GGTGgGTCAT AC RSP00917 Mean Expected Number 0.008 -strand +30 : +21 GTTGATGTGA AC RSP00996 Mean Expected Number 0.009 -strand +30 : +21 GTTGATGTGA Totally 7 motifs of 7 different REs have been found Description of REs found 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GLP1 |LOCUS: AT1G72610 |PROD: germin-like protein (GER1) |complement(27342776..27343706) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.29 C - 0.22 1 ctatgataaa aattggaaat cttcttcaac caatagtaaa tatcagtgtc 51 tacatcaaca ttaagatcac cagcgatcta aatgatgcag aacaggcagg 101 caaagaaaag aggcgttttg tttgtttcta agagtggtcc ttcttcttgg 151 acgtccataa tggtttctaa aagcttatct ccgtctttcg aatgttcacc 201 ACACAGTTTA TCCCACACCT CTCTATATAA ACACCCGAGA CCGAGAGGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.002 -strand -81 : -88 CAAAACGC AC RSP01017 Mean Expected Number 0.005 -strand -72 : -79 AGAAACAA Totally 2 motifs of 2 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G72630 |PROD: the same as GENE |27347932..27349238 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +718 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.27 C - 0.20 1 aaaaaaagta gtaacttact aactttagat aattttaatt acccttgtcc 51 gacaactgct actattacat gaaataaaca ggcctaataa gacgtagaga 101 ataaaacaaa agttacgggt cgggtcatcA CAATaatccg gctccagatg 151 tctgacactg gcatatcttt aacctccata actctgcaaa ttaaagattc 201 AGAGAGTAAG TAAGTACAAC CAAAAAAATC TTTATTTCTC TTCTCCAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01068 Mean Expected Number 0.008 +strand -50 : -42 TCTGACACT Totally 1 motifs of 1 different REs have been found Description of REs found 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: TRFL6 |LOCUS: AT1G72650 |PROD: myb family transcription factor |27353129..27357402 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +786 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.26 C - 0.19 1 gcagacgaca cggcgtgtct tgcacacgtg acctaaaacg gaacgtagtt 51 tactctgttt tggcatatta agctatttac tgacgtggca atgcttcgat 101 atcggaccaa agctgaatag gtatatacgg attccaaatc acaaaataaa 151 gttatttttg agttaataaa acgctttgga gtccgggacc tgttaatttt 201 GCTCTAAGCA CTGGAAAAAA AAAAAGCCTA AAGGGAGCCA AACATAAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -120 : -112 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -120 : -113 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -113 : -120 CCACGTCA AC RSP00247 Mean Expected Number 0.003 -strand -112 : -121 GCCACGTcAG AC RSP00248 Mean Expected Number 0.003 -strand -112 : -121 GCCACGTCAG AC RSP00405 Mean Expected Number 0.004 +strand -26 : -19 TTTGGAGT AC RSP00747 Mean Expected Number 0.001 -strand -116 : -127 CgTCAGTAAATA AC RSP01034 Mean Expected Number 0.007 +strand -118 : -112 ACGTGGC AC RSP01152 Mean Expected Number 0.002 +strand -178 : -169 CACACGTGaC AC RSP01656 Mean Expected Number 0.000 +strand -122 : -111 aCTGACGTGGCA Totally 10 motifs of 10 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: SNF7 family protein, contains Pfam domain |LOCUS: AT1G73030 |PROD: the same as GENE |27477487..27478783 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.29 C - 0.24 1 cgcagatgat gattgatcca tcgtgtaaaa aagagtgaca catcggacgg 51 tgctgagtca cttttgacac gcgtgccttg tgtgtgtgac tgtttattat 101 caccatgata tataaatcaa accgggtaat gaccgacatt tcgATTGAac 151 cggtcaattc cgattttgac ttagcttcct tcctcccctc ttcttcaaac 201 ATCAACGCGT CGAGATATTT TCCCCAAATA CAGAGAAACC CTAAAGTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.004 +strand -91 : -81 ATAtAAATCAA AC RSP00143 Mean Expected Number 0.004 -strand -126 : -135 cACGCGTGTC AC RSP00279 Mean Expected Number 0.002 -strand +44 : +36 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +36 : +44 AAACCCTAA AC RSP00445 Mean Expected Number 0.005 +strand -174 : -165 AAAAAAGAGt AC RSP00467 Mean Expected Number 0.003 +strand -50 : -41 CGGTCAATTC AC RSP00523 Mean Expected Number 0.009 +strand -134 : -128 ACACGCG AC RSP01303 Mean Expected Number 0.004 +strand +35 : +44 GAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G73090 |PROD: the same as GENE |27491878..27494427 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.23 T - 0.33 C - 0.14 1 ggtaatctcg ttactttgtg cagagcagaa ggaggaaact aaaggactgt 51 tatcagtggt aacgtaactg ggcttaccgg taatgtaact gggccaataa 101 tgtaaaatat ggcttATTGA aggcccaaat atgacggccc tttaattgta 151 accgtgtttg tttgtgaaat aaaatctcgt ttatcaaatt tctgtttcct 201 ATTTTATTTT TAAAAAAAGT GTTGGGAAAA TTTTCGTTTG GCCGGAGATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.009 +strand +13 : +22 AAaAAAGTGT AC RSP00943 Mean Expected Number 0.008 -strand -29 : -39 TtATTTCACAA AC RSP01055 Mean Expected Number 0.001 -strand -46 : -56 ACGGTTACAAT AC RSP01596 Mean Expected Number 0.008 +strand -39 : -29 TTGTGAAATaA AC RSP01776 Mean Expected Number 0.009 -strand -52 : -62 ACAATTAAAGg Totally 5 motifs of 5 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 975. Group TF: GT-3a /AC: RSP01055//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (2) /TF: GT-3a 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: sugar transporter family protein |LOCUS: AT1G73220 |PROD: the same as GENE |27541937..27544352 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.31 C - 0.14 1 tcttcttttc aagataattg aatttagagt tgtaaatgat catgagaact 51 taatgaacgt gtaccaatca aacgcaacag ataatataga caacacaata 101 taagaaagtt aaATTGTtta tacgaaaatt ttaatgactc ggtatgcaca 151 attgcttttt gattagttta ttagagagag tgagaaattg gatgcaaaac 201 ACTCCTCGAC CATGTGTATA TATACCATCG CTAACTTAAG ACATATATCA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G73230 |PROD: the same as GENE |complement(27543969..27545603) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +578 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.28 C - 0.20 1 actctctata tgcttaacag taactaactc ttacgcaatt tacgaaggaa 51 accaaaatta gaatctgaaa tgggccagag atttattagg gcccatggcg 101 tggctaatag taatatcgaa ggagagatcg tgaccgttgg atgatgatta 151 atataataat tgtatagtgg ttaaagctta gattggctac attacacatc 201 GCATTTACTT AAAGGGCAAA ACCCTCCAGC GCCGCTTGGA TCTCTCTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.005 +strand -194 : -184 TATaTGCTTAA AC RSP00263 Mean Expected Number 0.001 -strand -58 : -66 CATCCAACG AC RSP00295 Mean Expected Number 0.000 +strand -130 : -106 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -106 : -130 TGGGCC-- ** bp --GGCCCA AC RSP00864 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGAGA AC RSP00865 Mean Expected Number 0.000 -strand +51 : +43 GGAGAGAGA AC RSP00920 Mean Expected Number 0.001 -strand -169 : -180 AAgAGTTAGTTA AC RSP00953 Mean Expected Number 0.003 -strand -39 : -47 CAATTATTA AC RSP01032 Mean Expected Number 0.009 +strand -149 : -140 CCAAAATTAG Totally 9 motifs of 8 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G73470 |PROD: the same as GENE |27628810..27631359 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.38 C - 0.12 1 aaaaacattt gtgaaatttg attagagtgt aacaatgtgt tgttaaactt 51 gtgattatta ttctcttaga actgatttaa gtagtaaaac tttttgtatc 101 atctactgat ccttagtagt tagtcctttg attaatgatt catgaatgtt 151 atttttattg ttacaactat ataatataat tcaggattag ttatgcaatc 201 AAATTAAAAC AAAAAAAACT TAGAAGAGAA ACAATCTCAT CGCTCAGTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.008 +strand +30 : +37 AACAATCT AC RSP01017 Mean Expected Number 0.010 +strand +27 : +34 AGAAACAA AC RSP01470 Mean Expected Number 0.007 +strand -61 : -52 TCATGaATGT Totally 3 motifs of 3 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATMKK9 |LOCUS: AT1G73500 |PROD: mitogen-activated protein kinase kinase (MAPKK) |complement(27642752..27644190) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.30 C - 0.15 1 ccgcccaaat ctttcaattc caataacttt tagatacctt atcgttgtac 51 tacgattagg attagtcatt ttccatgata tattatataa tgtgaacaaa 101 tttacagtct gatGCAATta accacgtgcg taatcaaaca ctcacacaag 151 ttgcattttt tacgatatta tataggagga aaaaaagaaa aaaaaaatcc 201 ATTTTAAGAT AAGAATAAAA CTAAATAAGG AAAAAGAAGG ATAATTAGGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.007 +strand +6 : +14 AAGATAAGA AC RSP01205 Mean Expected Number 0.004 +strand -2 : +8 CCATTTTAAG Totally 2 motifs of 2 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: thaumatin-like protein |LOCUS: AT1G73620 |PROD: the same as GENE |27685069..27686790 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.32 C - 0.16 1 agttgataat tctctacttt caacttattt cttgtacaaa ccgtattatg 51 taatgtaggt aagcttattc tcatgattag ctcatttgat ctaattttaa 101 tatttatata aaaaacttat aaaccctaat aaaaaaatat ctgaccaaaa 151 aaaaaaaaaa accctaataa aaaacaaaca gtacactgtt ttttctctct 201 ATAAAGAGAA AATCTCCAAA AGCAATGACC AATGAGAAAT GTGAAGTTGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.002 +strand -138 : -129 GCTTATTCTC AC RSP00279 Mean Expected Number 0.004 -strand -34 : -42 TTAGGGTTT AC RSP00279 Mean Expected Number 0.004 -strand -72 : -80 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand -80 : -72 AAACCCTAA AC RSP00369 Mean Expected Number 0.004 +strand -42 : -34 AAACCCTAA AC RSP01012 Mean Expected Number 0.003 -strand -141 : -147 ACCTACA AC RSP01303 Mean Expected Number 0.007 +strand -81 : -72 TAAACCCTAA AC RSP01303 Mean Expected Number 0.007 +strand -43 : -34 aAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -81 : -72 TAAACCCTAA Totally 9 motifs of 6 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: Ras-related GTP-binding family protein |LOCUS: AT1G73640 |PROD: the same as GENE |27690653..27691788 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.30 C - 0.18 1 aataaatacg agtgagcaat gcgtaagtat aaaaacccga tttgactata 51 taatattctc aaaagaataa tactactaaa tctgattttc aaccaaaagc 101 caaattcagc ggaggaactg tcgttttcct ttcttcttta cttcttcacc 151 tttctcctat ttcatcttaa catataatca tcagaagaaa aaaaaattct 201 AAAACAAAAG AGGAACTTGA GAATTTTATG CTTGAGACAA AATGGCAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.002 -strand +44 : +34 CaTTTTGTCTC AC RSP00862 Mean Expected Number 0.001 -strand -67 : -75 AGAAAGGAA AC RSP01234 Mean Expected Number 0.008 -strand +35 : +29 TCAAGCA Totally 3 motifs of 3 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G73650 |PROD: the same as GENE |complement(27691784..27693968) |SUPPORT | 10 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.35 C - 0.17 1 cgaggttgat acagtttatt gtttccaaac tattgtatga tgcaaataat 51 gtataaagtt cacacttttt tgcgtacaag tattttcgtg tacaaatgag 101 acttttctcg tgtcacaagt aaacggcatg gtgtttagct cgcagccaca 151 taaattcatg ggagtattag ccatacacca agtcacccaa tgaccaaatg 201 TTAAAGTAAT GACTTTTTTT TATATGATAT ATTCTCAATT TTGTTACTCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00790 Mean Expected Number 0.001 -strand -42 : -52 aTGAATTTATG Totally 1 motifs of 1 different REs have been found Description of REs found 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G73655 |PROD: the same as GENE |complement(27694020..27695475) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.32 C - 0.16 1 tgcgtaattt cctctatttt gttttccaat attgaaactg tacaaagaga 51 gaaagaaaaa acaattgaca aactcgtcga aacgttgacc gaaaacatat 101 attaaaaaaa atcATTGAgc tctgtcttta ttcatcacac gaacaagata 151 aggctgatct ttattattgg gatatatgaa tcaaaataat ataatatttt 201 AAAAAACTTT GCTTTTACGA AAAATCTTTG ACAATGGCGA CTCTCTTCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.002 -strand -113 : -122 TCAACGTtTC AC RSP00860 Mean Expected Number 0.005 +strand -151 : -143 AGAAAGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MATE efflux family protein |LOCUS: AT1G73700 |PROD: the same as GENE |complement(27721041..27723309) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.31 C - 0.15 1 taataaaaca aaatataatc tgcctcaggg ggaagtagaa aagaaattaa 51 tttctattta ccacataatt aaaagatttc attccttaaa aaatgcataa 101 atatcaacga cggctccaca aaccctaaag actaggaaca aagagagaga 151 tagtttgttg ttattctatt tctcttagtt tttttttgac atattttttt 201 GTGAGAAACA GAGAGAAAAT GGAAGATGGT GTGACGCCTC CGCTTCTGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00041 Mean Expected Number 0.000 -strand -41 : -54 CAACAAACTATcTC AC RSP00115 Mean Expected Number 0.007 -strand -144 : -154 ATAGAAATtAA AC RSP00279 Mean Expected Number 0.002 -strand -73 : -81 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -81 : -73 AAACCCTAA AC RSP00572 Mean Expected Number 0.009 -strand -7 : -14 ATATGTCA AC RSP00838 Mean Expected Number 0.010 -strand -88 : -93 CCGTCG AC RSP00864 Mean Expected Number 0.001 +strand -59 : -51 AGAGAGAGA AC RSP01303 Mean Expected Number 0.004 +strand -82 : -73 cAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 40. Group RE: AACA box (P) /AC: RSP00041//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (P) /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G73790 |PROD: the same as GENE |27748333..27749038 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +347 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.32 C - 0.21 1 tttggccgaa ttaatcataa caaggtcttg aatcccttga ttccgacaaa 51 aaagaatccc ttgattaaaa ctagttcaga gacttcgatt gtattaaaac 101 cggcggattt tatttaaccg accgatttga tatgaaccag taaatatact 151 ctgaaccggc caaaggttta ttttcttaaa aaaaacaacc ctagatttct 201 AAATTCTAAT TGTTGGCCCA TTTTCGCCTC TTCTTCTTCG ATCACGAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.008 +strand -32 : -22 TATTTtCTTAA AC RSP01202 Mean Expected Number 0.002 +strand -41 : -34 CCAAAGGT AC RSP01692 Mean Expected Number 0.005 +strand +37 : +44 TTCGATCA Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G73940 |PROD: the same as GENE |complement(27801974..27803248) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.25 T - 0.23 C - 0.18 1 aagaaaacga aggatcgaat ctaccaggaa cattgaacaa gcagttgtgg 51 gtaaatgtac taatttcggc cttttcagat atttttggcg ggtaattaac 101 agataattct gtacactttt cttgggccga ataatagcCC AATgggctaa 151 acggcttatt ttgaaaatac ccaaggcgac gcgagaaacc taacttactc 201 CGGCCGAACG AAATCGAAGA AGAGAGAGAG AAAGAGAGTG AGAGTGACGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.006 +strand -14 : -5 AACCTAACtT AC RSP00254 Mean Expected Number 0.004 +strand -131 : -125 CCTTTTC AC RSP00858 Mean Expected Number 0.007 +strand -110 : -103 GGTAATTA AC RSP00861 Mean Expected Number 0.006 +strand +29 : +37 AGAAAGAGA AC RSP00864 Mean Expected Number 0.005 +strand +21 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 +strand +23 : +31 AGAGAGAGA AC RSP00877 Mean Expected Number 0.000 -strand -109 : -117 CCCGCCAAA AC RSP00985 Mean Expected Number 0.008 -strand -6 : -15 AGTTAGGTTt AC RSP01109 Mean Expected Number 0.005 +strand -98 : -91 ATAATTCT AC RSP01209 Mean Expected Number 0.002 +strand -85 : -76 CTTTTCTTGG AC RSP01621 Mean Expected Number 0.003 +strand -89 : -80 TACACTTTTc Totally 11 motifs of 10 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: strictosidine synthase family protein |LOCUS: AT1G74010 |PROD: the same as GENE |complement(27835819..27837774) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.41 C - 0.16 1 tttactcgtg tttttgtttg ctttatattt tttgcctatt ttcttcctaa 51 cataaaagaa tcattctatc aatcatagtc tgaagaaaag ctgtcaaatc 101 cccagaaaaa gaatttatcc atttatttac ggaacagtag atcttttctt 151 tttcgtgtta ttggtaacgt caaaaaaaag gaaatttcta tttagtattt 201 ACCTTATTAT TTTATATATA TATATGTGCA TATACACCCA CATAGAGATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.003 -strand -105 : -112 TGACAGCT AC RSP00802 Mean Expected Number 0.000 -strand +25 : +6 ATATATATATATaAaATAAT AC RSP01057 Mean Expected Number 0.000 -strand -30 : -40 GaCGTTACCAA AC RSP01094 Mean Expected Number 0.008 -strand -76 : -87 TAAaTGGATAAA AC RSP01209 Mean Expected Number 0.003 -strand -90 : -99 CTTTTTCTGG Totally 5 motifs of 5 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 755. Group TF: BABF /AC: RSP00802//OS: Solanum tuberosum /GENE: patatin 21/RE: Box A-1 /TF: BABF 977. Group TF: GT-3a /AC: RSP01057//OS: Arabidopsis thaliana /GENE: rbcS-1a/RE: GT-3a Box III /TF: GT-3a 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L6 (RPL6C) |LOCUS: AT1G74050 |PROD: the same as GENE |complement(27850710..27852467) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.33 C - 0.16 1 ggcgttggtc aaattgtgtg gggattatta gcctgagttt ttagataaac 51 tactctctaa ctctgatttt tttatcatcc tgtcaaaata gttttaggtg 101 aaaagattta atactacaaa gttgtaagaa aaaacaaatc ctattatgca 151 tgttacggtc cacattaaaa ggccgatata attgtaaagc ccatgagccc 201 AAGAAAGCCC TAAAATTTAA TTAGGGTTTC AGTGTCTTCA AATTCACCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 +strand -46 : -39 ACGGTCCA AC RSP00279 Mean Expected Number 0.002 +strand +21 : +29 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +29 : +21 AAACCCTAA AC RSP00939 Mean Expected Number 0.000 +strand -47 : -36 TACGGTcCACAT AC RSP01303 Mean Expected Number 0.004 -strand +30 : +21 gAAACCCTAA AC RSP01470 Mean Expected Number 0.008 +strand -57 : -48 TtATGCATGT Totally 6 motifs of 6 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 868. Group TF: GBF /AC: RSP00939//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: G box /TF: GBF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: sulfotransferase family protein |LOCUS: AT1G74090 |PROD: the same as GENE |27866570..27867854 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.32 C - 0.20 1 tgaagagtgt agtttatagt tgaatagatt acagataaga gcctaccttt 51 tggccaattt tttatagatt aacaaatcat atagtattta agttataaac 101 tctctgtctc tgagtgcgtt ttctacttta agcatgtgca caccaaacca 151 acaacctgcg aatcacatat taacacgtgg gtaaaaatag ctgcattact 201 AAAGCCAATC TGATCTTTGT CCAAACACAG ACCATCATCA CTCATTTCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.007 +strand -28 : -22 ACACGTG AC RSP01255 Mean Expected Number 0.001 +strand -28 : -21 ACACGTGG AC RSP01640 Mean Expected Number 0.006 +strand -99 : -90 CTcTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: sulfotransferase family protein |LOCUS: AT1G74100 |PROD: the same as GENE |complement(27868006..27869355) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +189 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.08 T - 0.42 C - 0.18 1 taaaacgtga tttttttagt accaacaacc acttcttctc tacttacaaa 51 ttttttttca tacaatcact tgcttacctt aatttttttt ttttttgtta 101 aagtcttgta aataaatcta aaatctactt cctagtgtta tatagagttt 151 tcaatataac ttgctaataa aaatgaaatt caattttacc aactaaattc 201 AATAATTTTA CATTGGTTTG TTCAACTGAT GCGACCCTTA TCGAGCCATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.005 +strand -175 : -166 CAaCCACTTC AC RSP01699 Mean Expected Number 0.005 +strand -196 : -190 ACGTGAT Totally 2 motifs of 2 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G74210 |PROD: the same as GENE |27913979..27916602 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.18 T - 0.25 C - 0.12 1 tattactact ttttattcag aaatataaaa tgcaacctta aaaagtcttt 51 gtcaaccaaa aacaaatgga atattcggaa aacgtgaatt gaagaagaaa 101 gatataatat tcgcccaaga gcggtaagcc aagaaacagg TCAATggagt 151 aagagtgata tatcatatat gtatatcatt agaaacactt tattataaat 201 GGACAAGAAC TGATAGAGTG GGATAAGAGA CAAATAAGGA GAATCAAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.003 -strand -7 : -16 AAtAAAGTGT AC RSP00792 Mean Expected Number 0.007 +strand -72 : -63 CCAAGaAACA Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 60S ribosomal protein L35a (RPL35aC) |LOCUS: AT1G74270 |PROD: the same as GENE |complement(27931917..27933158) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.31 C - 0.19 1 gagagccaac tgttcaagaa ctacaacata gagatcgttt ttttgttgtt 51 gttttgagat aaaaatagag aagcccattt ttatatgtta ttcattatag 101 taatggccca agatgcttaa tatactaatg ccCCAATagt gttaaggccc 151 ataagcccat attagggctt cttcttcgtt tttctccctc gagtagcagc 201 AGCAGCCTTT GGATATTCGG CGGAATCGAA AATGGTCAAG GGACGCCAAG 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT1G74280 |PROD: the same as GENE |27933323..27935025 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.29 C - 0.20 1 accattttcg attccgccga atatccaaag gctgctgctg ctactcgagg 51 gagaaaaacg aagaagaagc cctaatatgg gcttatgggc cttaacacta 101 ttggggcatt agtatattaa gcatcttggg ccattactat aatgaataac 151 atataaaaat gggcttctct atttttatct caaaacaaca acaaaaaaac 201 GATCTCTATG TTGTAGTTCT TGAACAGTTG GCTCTCTTTT CAAGAATCGT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G74370 |PROD: the same as GENE |complement(27961323..27963018) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +372 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.25 T - 0.25 C - 0.18 1 gcgcacaagg agaagaagaa acgcgtacag ctcactctca ccgacaacta 51 ctattttact ttaaccgatt tcggtaatag aaaattacgg aactaaaccg 101 gtagtttaat tttggcggta tagtgaaacg atgcgttttg gtagttaaac 151 ctgaaaacag aaacggataa ggtgaggaaa tcggtggggg cggcggaaac 201 ATTGAAAGGC GTTTCAGAGT CACCATGTTT TACGACGCGT GTCTCTTTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.004 +strand +34 : +43 GACGCGTGTC AC RSP00445 Mean Expected Number 0.003 -strand +51 : +42 gAAAAAGAGA AC RSP00523 Mean Expected Number 0.008 -strand +42 : +36 ACACGCG AC RSP00652 Mean Expected Number 0.003 +strand -103 : -96 CCGGTAGT AC RSP00734 Mean Expected Number 0.003 -strand -61 : -68 CAAAACGC Totally 5 motifs of 5 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 626. Group TF: C1 /AC: RSP00652//OS: Zea mays /GENE: a1/RE: C1 DBS /TF: C1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G74410 |PROD: the same as GENE |27969215..27971563 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +169 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.27 C - 0.16 1 tagtggaagt taatcaaagc ccacttgtag gagcctgtgg cccaacaaat 51 taaatcaaaa ttgataactt aaataatttt aagttttcac ttttatcaaa 101 aaggggcctg ggaaaaaaac aaatatcaaa gaaagcccaa aaaagacgga 151 gaaatcagat ttttttgaat ttaagaaatt aaaaaaaaaa aaggagagct 201 CCGTCTTCGT TGCTTTTTCG AGCGGTGCCT AGTCTCAACT TCCATGGCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.005 +strand -180 : -174 CCACTTG AC RSP00629 Mean Expected Number 0.009 -strand -37 : -44 AAAAATCT AC RSP01191 Mean Expected Number 0.001 -strand -161 : -168 CCACAGGC AC RSP01499 Mean Expected Number 0.006 -strand -48 : -57 TTCtCCGTCT AC RSP01601 Mean Expected Number 0.003 +strand -116 : -109 TTTCACTT Totally 5 motifs of 5 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G74450 |PROD: the same as GENE |27986170..27987941 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +228 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.33 C - 0.17 1 caacggctga gatttattca tcttcctatt ttattttatt tctcctactt 51 ggtatattat taatttacgt gtaagctgcg tgtttcggac gagtaacaac 101 gcatgaaatt aaaaataaac aaaatcaaaa tagacaaaag agatcttttt 151 cgttggaatg aaaaaaataa aactttagtc caaatccttt ttccatattt 201 ATCACAAATT ACATACTAAA AAAAAATAGA CGCGGTCAAA ATTCTCTCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01261 Mean Expected Number 0.003 +strand -136 : -129 TTACGTGT AC RSP01733 Mean Expected Number 0.004 -strand +35 : +30 CCGCGT Totally 2 motifs of 2 different REs have been found Description of REs found 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G74640 |PROD: the same as GENE |28036424..28038434 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.19 T - 0.39 C - 0.20 1 tactctctat aacttgaggt cttcatttgc gaggtttgtg gtttacattg 51 ccttgggact gcgggtaact ttgatacttt gcattcttct tggcctagaa 101 cgtaatatac gaaattgttt tggactgttA TTGTaaattt ctaacagatt 151 ctaccaaact ttgacgagaa atatcaagca cgtcttcgtg gttctggttc 201 AAAAGTCTCA ACCTTTGAAT CGTCGTTTCC TTCTTTCTCG CTTCAGATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.005 +strand -59 : -50 TAACAGAtTC AC RSP00750 Mean Expected Number 0.002 +strand -73 : -62 TTATTGTAAAtT AC RSP01014 Mean Expected Number 0.001 -strand -172 : -181 CAAATGAAGA AC RSP01234 Mean Expected Number 0.008 +strand -27 : -21 TCAAGCA Totally 4 motifs of 4 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G74660 |PROD: the same as GENE |complement(28051237..28051788) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.28 C - 0.19 1 tatagggaga cgaacaaaaa agatcaatta tgtacaaagt agcccatatt 51 ttaagccact ttgtcgacac cgtagagata aatacataaa ttaatcatct 101 ctagggttag attattaACA ATaacaatgt agctatttta taaaaggggc 151 acaaagggca ttaccaaaga acaagtccac accttctagt cttcttcact 201 TCGTTTTCAT AAAGAGTCTT TCGTAAGACC AAAGAGCCAT TTTCGATTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00940 Mean Expected Number 0.007 -strand -124 : -133 cTCTACGGTG AC RSP01463 Mean Expected Number 0.004 -strand -110 : -122 ATTTATgTATTTA Totally 2 motifs of 2 different REs have been found Description of REs found 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G74860 |PROD: the same as GENE |28126980..28129543 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.26 C - 0.16 1 aaatgtaaaa agcaaaagag agattacgaa aagagtgacg gagataacgg 51 gaaaccgtac cgccgtttgc agtctgaaat gctgaagctg acgtgacgtg 101 tggtgtggcg tttgagaaat aacatcgagt ttttaggggt aaataggtct 151 ttatacttct ttctgttcct aacagacaga cgcttcaagg aaacacaaaa 201 AGAAACAAAA AAAAAAAAAA AAACCTTTTT AGCTTTTTCT TTCTTCTTGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.002 -strand -99 : -106 CACACGTC AC RSP00208 Mean Expected Number 0.000 -strand -104 : -115 GtCACGTCAGCT AC RSP00233 Mean Expected Number 0.009 -strand -157 : -166 TCTcCGTCAC AC RSP00248 Mean Expected Number 0.002 -strand -104 : -113 GtCACGTCAG AC RSP00557 Mean Expected Number 0.000 +strand +28 : +43 TTTaGCTTTTTCTTTC AC RSP00860 Mean Expected Number 0.000 -strand +44 : +36 AGAAAGAAA AC RSP00916 Mean Expected Number 0.005 +strand -114 : -105 GCTGACGTGA AC RSP00917 Mean Expected Number 0.004 +strand -114 : -105 GCTGACGTGA AC RSP01258 Mean Expected Number 0.003 +strand -107 : -100 TGACGTGT Totally 9 motifs of 9 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 533. Group RE: UN U2 /AC: RSP00557//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: UN U2 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: senescence-associated protein-related |LOCUS: AT1G74940 |PROD: the same as GENE |28149720..28150839 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +225 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.28 C - 0.17 1 ggaatcatta cataagaaaa gaaaaaataa tatctgagcc tgctcatatc 51 aataattgtg tatatataga attatataga tgatgtcgat aaaagaaacc 101 aaacaagata aataaataca aaaataataa tggtgatggt gggccgttct 151 ataaacttca atcattaatc atagcacaca aaattccaaa cttgagaaat 201 ATAATCAGTG GGCTAAACTC TAAAGTCTCT CTACCTTTCT CCATCTCCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01060 Mean Expected Number 0.006 +strand -151 : -143 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand -143 : -151 CAATTATTG AC RSP01077 Mean Expected Number 0.004 +strand -151 : -143 CAATAATTG Totally 3 motifs of 2 different REs have been found Description of REs found 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G74950 |PROD: the same as GENE |complement(28152236..28154055) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.30 C - 0.16 1 ttatttcaag tgtgaagcgt ggggacgtgg gtgacggtgg tgatctgaaa 51 cagtggtctg ccgttaaaac attaaattaa aacacgtgtt ttaaatgtct 101 ctatgttaat taatactata agagtatatt ttactaattt ccgtatctgc 151 aaccagcgaa aaaaaagtaa taaagaggtc ctccatttct tcctcgtgac 201 AAAACGCACT TGGCAGAGAA AGATAAACAA GAACCCTAAG TTTTTTTATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 +strand -39 : -28 AAAAAGTAAtAA AC RSP00524 Mean Expected Number 0.008 +strand -119 : -113 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -112 : -118 ACACGTG AC RSP00654 Mean Expected Number 0.005 -strand -168 : -177 CACCCACgTC AC RSP00734 Mean Expected Number 0.003 +strand -1 : +7 CAAAACGC AC RSP00782 Mean Expected Number 0.000 +strand -120 : -111 AACACGTGTT AC RSP00782 Mean Expected Number 0.000 -strand -111 : -120 AACACGTGTT AC RSP00978 Mean Expected Number 0.002 +strand -120 : -111 AaCACGTGTT AC RSP00978 Mean Expected Number 0.003 -strand -111 : -120 AaCACGTGTT AC RSP00996 Mean Expected Number 0.005 +strand -162 : -153 GGTGATCTGA AC RSP01256 Mean Expected Number 0.003 +strand -119 : -112 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -112 : -119 ACACGTGT AC RSP01304 Mean Expected Number 0.002 +strand +30 : +39 aGAACCCTAA AC RSP01642 Mean Expected Number 0.004 +strand -108 : -99 AAATGTCTCt AC RSP01702 Mean Expected Number 0.008 +strand -120 : -111 AACACGTgTT AC RSP01702 Mean Expected Number 0.008 -strand -111 : -120 AACACGTgTT Totally 16 motifs of 11 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 737. Group TF: G-box binding TF /AC: RSP00782//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 6 /TF: G-box binding TF 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RPS9 |LOCUS: AT1G74970 |PROD: ribosomal protein S9 (RPS9) |complement(28161191..28162930) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.18 T - 0.37 C - 0.22 1 tttttgtttt gaccattttg tttttgttaa catatgtaac gaatctacac 51 agagtatttg tgttttcaag ctccttgtta agcccaatga aggtttttaa 101 tgggctctaa tgggccgatT CAATaagttg gaaagctcat gaagcgagag 151 ggaccgtgcc taatctcatc ttcactctgc tcgttatctt cttccttttt 201 ACCTGTTCAA CGAAACTCCT GAGCTCAGCT TCACTTTGCT CGACGTTATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01205 Mean Expected Number 0.010 +strand -128 : -119 CCTTGTTAAG AC RSP01743 Mean Expected Number 0.000 +strand -195 : -183 GTTTTGACCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: LPAT4 |LOCUS: AT1G75020 |PROD: |28174679..28177097 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +761 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.18 T - 0.33 C - 0.27 1 cgtttgagtt tcacaaaaag tgtaacgacg ccaggagaat tttatcgggt 51 cgcaagtgtc acctttgtgg attttgtctt ccctgcaact tttgaccttt 101 tcgcactcag cgaatcagat cgctatagta cggtgcaccc taccgtctct 151 gatcatcccc actgtcttaa ttagatccga cccgaaacgt atccttctct 201 GAAACTTCGT TTGAGATTCG CATTCCTCTG TTCTTCCACC ATTTAACAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.006 +strand -150 : -141 CGCAaGTGTC AC RSP00270 Mean Expected Number 0.001 -strand -177 : -187 TACACTTTTtG AC RSP00741 Mean Expected Number 0.003 -strand -100 : -111 AAAAGGTcAAAA AC RSP01621 Mean Expected Number 0.003 -strand -177 : -186 TACACTTTTt Totally 4 motifs of 4 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G75180 |PROD: the same as GENE |complement(28219134..28222237) |SUPPORT | 2 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +665 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.38 C - 0.26 1 tcttcctctt ggttcttgcc tctctcttct cgttggatat cataaaaaga 51 caattctatc gagttcccat cactattccc gatttctgat ttatttttcc 101 ctttcactgt agatcctttt ttccgactca cacactttcg atattttctt 151 ttgttttctt caaaaaagac atattttttt tgctgggact atcaattggg 201 GTCCGTCGCC ACGCCACGCG CCGAGCTCGC AATATATCGA AAGCAACGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.001 -strand +22 : +13 GgCGCGTGGC AC RSP00445 Mean Expected Number 0.001 +strand -39 : -30 AAAAAAGAcA AC RSP00879 Mean Expected Number 0.003 +strand +38 : +44 CGAAAGC AC RSP01639 Mean Expected Number 0.004 -strand -146 : -155 AATTGTCTTT AC RSP01753 Mean Expected Number 0.000 -strand -75 : -88 tCGGAAAAAAGGAT Totally 5 motifs of 5 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown 1559. Group TF: GmMYB76; GmMYB92; GmMYB177 /AC: RSP01753//OS: Glycine max /GENE: Synthetic OLIGO/RE: GmMYB76/GmMYB92/GmMYB177 BS2 /TF: GmMYB76; GmMYB92; GmMYB177 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G75190 |PROD: the same as GENE |28223043..28223888 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +216 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.30 C - 0.18 1 aatgaagttt atgtcaagac ctcaaacctc acacacagat tgtagctacc 51 aaccgggtcg tggttaggtg gtgccgtggt ggcaatagtc ttgcatacta 101 gatttaaaga tatacttctt ctataatgtc tagaacgtag actgtatatg 151 aaccctaact ccaaggatat atatgtcata cttgtattat attggtggat 201 AATAGAGAAG AGATAACCAA CGGACAAAAA TAAAATCTAC TTTTTCTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.008 +strand -158 : -149 TAgCTACCAA AC RSP00572 Mean Expected Number 0.008 +strand -30 : -23 ATATGTCA AC RSP00651 Mean Expected Number 0.001 +strand -157 : -147 AgCTACCAACC AC RSP00739 Mean Expected Number 0.001 +strand -158 : -147 TAgCTACCAACC AC RSP01103 Mean Expected Number 0.005 +strand -177 : -170 AAACCTCA AC RSP01303 Mean Expected Number 0.003 +strand -52 : -43 TgAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -52 : -43 TGAACCCTAA AC RSP01454 Mean Expected Number 0.008 +strand -153 : -147 ACCAACC AC RSP01757 Mean Expected Number 0.003 +strand -188 : -181 GTCAAGAC Totally 9 motifs of 9 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 701. Group RE: Box 1 homolog (2) /AC: RSP00739//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog (2) /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G75240 |PROD: the same as GENE |28244735..28246417 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +502 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.29 C - 0.15 1 acaaataatc gaaatagtaa ttcagaaatt ctcttctcat taaaaatata 51 gaagccctca taaatatata taaaaaggtt ataaaagcgc atttaaaaat 101 ataatactaa aatgataaat acagattaat ggaagaagta taataaagaa 151 gtacttaata agtataagta tatagtagta gggtatgaca ttagtgtcat 201 CTCTCACAAA GGGCTCAGCT CTTATCTCTT TCTCTCATGG CCTCACCACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.009 +strand -128 : -117 AAAAGGTTAtAA AC RSP00861 Mean Expected Number 0.001 -strand +33 : +25 AGAAAGAGA AC RSP01458 Mean Expected Number 0.010 +strand -110 : -98 ATTTAAAAATaTA Totally 3 motifs of 3 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: dehydroascorbate reductase, putative |LOCUS: AT1G75270 |PROD: the same as GENE |complement(28253736..28255010) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.36 C - 0.16 1 tcattgacaa atacattcta acatcaattt tggtttgtat tggtaacact 51 tggacaatga tttgaccatt tgattggtgc aaaaaaaaga aggagactaa 101 CCAATtggag aaggttcgaa tatatcgtaa cagccacttc atcaatgacg 151 tcacaaattt catgaacata tttaaagacc aaagatttcg ttttccttgt 201 ATTTTATTTG AAAGACATTT TTGCCTATTT CATTCATATT TTGCTTTTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.008 -strand -50 : -59 ACGTCATtGA AC RSP00467 Mean Expected Number 0.003 -strand -133 : -142 TGGTCAAATC AC RSP00654 Mean Expected Number 0.002 +strand -70 : -61 CAgCCACTTC AC RSP00847 Mean Expected Number 0.002 +strand -67 : -58 CCACtTCATC AC RSP00915 Mean Expected Number 0.002 -strand -58 : -67 GATGAAGTGG AC RSP01654 Mean Expected Number 0.005 +strand -57 : -48 AATGACGTCA AC RSP01743 Mean Expected Number 0.000 +strand -142 : -130 GaTTTGACCATTT Totally 7 motifs of 7 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: isoflavone reductase, putative |LOCUS: AT1G75280 |PROD: the same as GENE |28255622..28257280 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.31 C - 0.18 1 acgatcatag ttataaggtt ttaaccttcc ggttaaccag tgattatttt 51 agctaattag gattttaata agaattttga tggggaggca cgaacaagaa 101 atgaatatct tagaATTGAa gtaaggttca gtaagggtat tatcgtaaat 151 caaccaaaca atgtctggtc cataaattgc ggtgcccaaa ccattccttc 201 AAGCACATTC CAAATCATTT TCTTACCACT CAAAGAGTGC GCACTCATTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00985 Mean Expected Number 0.008 +strand -81 : -72 AGTaAGGTTC Totally 1 motifs of 1 different REs have been found Description of REs found 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: wound-responsive protein-related |LOCUS: AT1G75380 |PROD: the same as GENE |complement(28285050..28287703) |SUPPORT | 10 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +411 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.33 C - 0.15 1 attagctttc aatattgttt tttatataca aaaaaaaaca aaattaggaa 51 gattatggtt tacataaaaa gttggcaaaa ttttattttc atgactaaaa 101 aattaggcaa aatgaaacaa aatttggtga aagggtaaaa tcgACAATta 151 aaacaaaaac tgcgtcgata aagtaacgga gattctttca ctcctttgat 201 CTCTCAAGTG AAGAATCTCT CTCTATCTCT ATCTTCTTCC ATTGATCCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00850 Mean Expected Number 0.009 -strand -125 : -130 GCCAAC AC RSP00864 Mean Expected Number 0.000 -strand +24 : +16 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: BLH3 |LOCUS: AT1G75410 |PROD: BEL1-like homeodomain 3 protein (BLH3) |complement(28303453..28306232) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +681 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.38 C - 0.12 1 agaaaaacaa acaaaaaaga attactggta gagaatagag attgtcaaat 51 ttctccatag gttagtgata cactgatatt ttattaaaca ttaattaaaa 101 aatctgggtt tgttgtcgag gttCCAATga taagatggtt tggttctgtt 151 ctttgttagt gaatgccaaa taaagtttta aaatagtatc ggaatttaat 201 AAAAATCGTC TCTTGGGATT GGGTGTCTTC TCTTTCTTTC TCTCTCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.005 -strand +24 : +15 AcCCAATCCC AC RSP00653 Mean Expected Number 0.001 +strand +38 : +48 TTCTCTCTCtT AC RSP00860 Mean Expected Number 0.004 -strand +41 : +33 AGAAAGAAA AC RSP00861 Mean Expected Number 0.001 -strand +37 : +29 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +47 : +39 AGAGAGAGA AC RSP01206 Mean Expected Number 0.000 +strand -77 : -66 CCAATGATAAGA AC RSP01209 Mean Expected Number 0.003 -strand -26 : -35 CTTTATTTGG Totally 7 motifs of 7 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1116. Group TF: LFY /AC: RSP01206//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EL1 /TF: LFY ||Identical REs AC: RSP01211 RSP01216 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G75460 |PROD: the same as GENE |28331547..28333425 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.33 C - 0.21 1 cttagtcagt aatccctaat ctaaagagca cgtggcatta caagaatttt 51 gtagatggat aatataaagt ctctcactcg tgggatattc agaatcacat 101 ccacttcttc ttcctctcct ctcgtttatt atccacacaa caaaaataca 151 aatcactcaa atatctgtta taatgacatg tcaattatca tatccttaat 201 TTTTTTTTCT TTAAACCCAC CAAAAGGCAA AAGAAATATT CAAATAATGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 +strand +21 : +27 CAAAAGG AC RSP00064 Mean Expected Number 0.001 +strand -174 : -165 AGcACGTGGC AC RSP00175 Mean Expected Number 0.000 +strand -172 : -165 CACGTGGC AC RSP00460 Mean Expected Number 0.004 +strand -26 : -17 GACATGTCAa AC RSP00460 Mean Expected Number 0.004 -strand -19 : -28 GACATGTCAT AC RSP00654 Mean Expected Number 0.009 +strand -103 : -94 CAtCCACTTC AC RSP00821 Mean Expected Number 0.000 -strand -165 : -174 GCCACGTgCT AC RSP01034 Mean Expected Number 0.001 +strand -171 : -165 ACGTGGC Totally 8 motifs of 7 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G75810 |PROD: the same as GENE |28465326..28466007 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.31 C - 0.23 1 cgtggcaagt ctgaccaaat cccgaaacgg tgacgtttta cgggaagggt 51 acttttacca aactcttctc gcattagtga tgagccatag agaggaagca 101 aaagatcttg tcaagggtgt tttagtaatt tcaaaatatc cttcccttcg 151 ttgacaagga tgacgtcttt ttgagtattt caacatccac cacaatttcg 201 CTTTTCTCCA CTTTTTCTGT TAAAAAGCTT CCTCCACCGC AACGAATTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -163 : -176 AAACGtCACCGTTT AC RSP00355 Mean Expected Number 0.008 -strand +22 : +15 TAACAGAA AC RSP00385 Mean Expected Number 0.010 +strand -73 : -66 ATTTCAAA AC RSP00459 Mean Expected Number 0.004 +strand -50 : -41 TTGACaAGGA AC RSP00749 Mean Expected Number 0.002 -strand -64 : -75 ATTTTGaAATTA AC RSP00863 Mean Expected Number 0.000 +strand -112 : -104 AGAGAGGAA AC RSP00997 Mean Expected Number 0.003 +strand -42 : -33 GATGACGTCT AC RSP01654 Mean Expected Number 0.006 +strand -172 : -163 GGTGACGTTT AC RSP01654 Mean Expected Number 0.006 +strand -42 : -33 GATGACGTCT Totally 9 motifs of 8 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G76070 |PROD: the same as GENE |28551276..28552505 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +235 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.31 C - 0.16 1 gctgaatttt gcttgcatgt aggtcccaaa tatcaccacc gtttcttaaa 51 gaaatgttat actattttga tttttggact attgaggcac aaactaaagt 101 caaattagta attaactaat catcatcttt ggaaaataaa aaaatgtgcc 151 gtttagcttt taggtagtag taacaaaaag aagaaacttg aaacaaaaac 201 AAACATGTCT TCCGCATTTT GATTTTATAA AGTCGGCCGT ATAAACACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.006 -strand +37 : +32 GCCGAC AC RSP01091 Mean Expected Number 0.008 -strand +28 : +18 ATAaAATCAAA Totally 2 motifs of 2 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: thioredoxin family protein |LOCUS: AT1G76080 |PROD: the same as GENE |complement(28552680..28554313) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.28 C - 0.23 1 ccggttcaat tagtcttact tggatgctgg tggaattttc cagaatgaca 51 acaacttgaa caaaataaac ttgaattgct tttagaaaca gcaatctcac 101 caagttcaca tattcctttt atattcccac gaaaaaaatc taatcaacag 151 tgaacacaat ccacacaagt taaacaagtg gacataaaag tcttggaccc 201 ATTTTAAAAC ATCTATCCAC ATTAAATCAT TCACTGATCT CTAACCAATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.003 -strand -20 : -26 CCACTTG AC RSP00773 Mean Expected Number 0.006 -strand +29 : +20 TGATTTAATG AC RSP00894 Mean Expected Number 0.006 -strand -124 : -131 AATTCAAG AC RSP01751 Mean Expected Number 0.000 -strand -19 : -27 TCCACTTGT Totally 4 motifs of 4 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: tRNA pseudouridine synthase family protein |LOCUS: AT1G76120 |PROD: the same as GENE |complement(28563564..28565367) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +179 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.31 C - 0.18 1 ctttcttttg cccactagaa cagactgtat ttccaaagat gtgtgctcaa 51 tggatatagt tgactttttc aaatttgact tgaattataa gagaaacatt 101 tgggcttgag actaataagc ccatatataa aacaaaatta taggcccagt 151 taaagagcgg tctgatatca aaaacgccgt cgtagagaag catacctcag 201 TCGTCTTCAA GGGTTTCGAC TTTTGTGCGG TAGCCATTAA CGTTGTTGCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00296 Mean Expected Number 0.000 +strand -100 : -78 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -78 : -100 TGGGCT-- ** bp --AGCCCA AC RSP00894 Mean Expected Number 0.008 -strand -115 : -122 AATTCAAG AC RSP01016 Mean Expected Number 0.008 +strand -109 : -102 AGAAACAT Totally 4 motifs of 3 different REs have been found Description of REs found 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ERD14 |LOCUS: AT1G76180 |PROD: dehydrin (ERD14) |complement(28591667..28592771) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +220 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.33 C - 0.13 1 aaaaactatc tagttgccat tcttatccat tattttttat tccactaaat 51 tgatatcaga tcacgtaagc aaactattaa caattaatta atgaattctt 101 cttaatCCAA Tataacttta tctaattaac agaaaaatga taattaacgt 151 ggggacgaag gagaagatgc cataaaaagc gggtcatttt gtaatttcat 201 ATAATTAGAT ATATGTTTTT AAATTGCAAA AAAAAAGTGT ACAAAGAGCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.004 +strand -23 : -18 AGCGGG AC RSP00559 Mean Expected Number 0.005 +strand -11 : -1 TGTAATTTCAt AC RSP00749 Mean Expected Number 0.008 +strand -15 : -4 ATTTTGTAATTt AC RSP01094 Mean Expected Number 0.005 -strand -73 : -84 TAATTaGATAAA AC RSP01209 Mean Expected Number 0.009 -strand -22 : -31 CTTTTTATGG Totally 5 motifs of 5 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G76185 |PROD: the same as GENE |28595219..28596412 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.27 C - 0.22 1 caaatttcat ggcatcggaa caaagttttc atatatgatg acaactcaaa 51 acaaaagagt aacggtaaaa gcccaatacc cataaaatgg gcttaagaat 101 ccagatcgga tctataaccc gacccggttg ttgacaccga gagagtccac 151 gcaacgttcg ccgaattcct aacgaatcgg acaccgtttc gtcgctgtaa 201 AATTTTGATG CGAAATTTTC CAATTCACAG ATTTTGTTTT TCCATTGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.009 +strand -182 : -173 AACAAAGTtT AC RSP00881 Mean Expected Number 0.004 -strand -66 : -75 gTCAACAACC AC RSP01621 Mean Expected Number 0.009 -strand -140 : -149 TACtCTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G76200 |PROD: the same as GENE |28598144..28599636 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.26 C - 0.16 1 agtttttgga aaacaaaaac caaaaactct tacaaaatct acaaaacatt 51 caattcatgt atccaaactt cttaaagggc ccaaaaagga agaaaacatt 101 gtgaaagaaa cagatataga aatgggcctt tggtctttaa ATTGGgccta 151 agccttttaa ttgaggcctt actaaaagtg acgactcaca tggttgaatc 201 AAATCTCAGG TAGTAAATTG TCAAAGCTGA GGAGAAAGAA AGCTTTTTCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.006 -strand +40 : +30 TTCTtTCTCCT AC RSP01214 Mean Expected Number 0.005 -strand -112 : -121 CCTTTTTGGG Totally 2 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G76405 |PROD: the same as GENE |28666817..28668683 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.27 T - 0.31 C - 0.16 1 aaccagagac cttaacaaaa tattggctat ttccccgggt cggatctagt 51 cgaagcccat atatattggg ccctaaacat gggcttaagg gactagattg 101 gctcttttac taataggaca gctggcggtg agttATTGGt tggattatgg 151 tgaaccttgg tgcagaggat gatacagtag tcgaagtgtg caaaaactag 201 GTGAGGTTTT GGTTTTGTTG ACTCAGTGAG GATTTTCTAG GCGATTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.005 -strand -124 : -130 TTTAGGG AC RSP00716 Mean Expected Number 0.004 -strand +17 : +9 CAAAACCAA AC RSP00934 Mean Expected Number 0.010 -strand -178 : -187 ATATTTtGTT Totally 3 motifs of 3 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: oxygen-evolving complex-related |LOCUS: AT1G76450 |PROD: the same as GENE |28689465..28691614 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.35 C - 0.10 1 tttatcaaaa acagaattgt gtaaatgttg tgtcattatg tgtcgacttg 51 gatgtatgca ttacataatt ttattttata tatgttttta attgttagag 101 catttattcg aaaattataa atATTGAatt ttaatcctca gtcacttaat 151 aaaaacatta ttttaggact aaaaaataat aaaagttgaa acagcaaagt 201 AGCGATAGAT TTCGTGAAAA CAGAGAAGCG GACATATCTT GAAACACATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01250 Mean Expected Number 0.004 -strand -69 : -78 AAAATTCAAT Totally 1 motifs of 1 different REs have been found Description of REs found 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CDKB2;1 |LOCUS: AT1G76540 |PROD: cell division control protein, putative |complement(28725222..28727415) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +170 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.29 C - 0.17 1 agtctgtgtt tgggttcact aatcttcttg ttgccttctc gatcataatt 51 tgtatatggt gcgaccaaat caaagtacct acggatatat atgacaagtg 101 gacacaaatg aataaatgta aaaattaaaa ttaaatacta tagtacgtgg 151 caaattaaaa aaaggcgttt atgaaaagac cgctcctcca cgctccagtt 201 TGAATTTCGA AAAATCAGTC CGTTGTGAAA GCCCAAGAAT AAGGATTCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -57 : -50 TACGTGGC AC RSP00051 Mean Expected Number 0.003 -strand -50 : -59 GCCACGTACt AC RSP00056 Mean Expected Number 0.004 -strand -99 : -108 tCCACTTGTC AC RSP00064 Mean Expected Number 0.003 +strand -59 : -50 AGTACGTGGC AC RSP00072 Mean Expected Number 0.007 +strand -58 : -52 GTACGTG AC RSP00075 Mean Expected Number 0.002 +strand -58 : -49 GTACGTGGCa AC RSP00340 Mean Expected Number 0.004 -strand -99 : -108 TCCACtTGTC AC RSP00522 Mean Expected Number 0.009 -strand -100 : -106 CCACTTG AC RSP00683 Mean Expected Number 0.004 +strand -108 : -99 GaCAAGTGGA AC RSP00778 Mean Expected Number 0.004 +strand -92 : -83 TGAATAAATG AC RSP00821 Mean Expected Number 0.001 -strand -50 : -59 GCCACGTaCT AC RSP01034 Mean Expected Number 0.004 +strand -56 : -50 ACGTGGC AC RSP01276 Mean Expected Number 0.001 +strand -58 : -51 GTACGTGG AC RSP01751 Mean Expected Number 0.001 -strand -99 : -107 TCCACTTGT Totally 14 motifs of 14 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: CP12 domain-containing protein |LOCUS: AT1G76560 |PROD: the same as GENE |28733147..28733747 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.27 C - 0.13 1 caactacctt atgagaagaa aataatattt ttttctaaag tcaaatgttt 51 gatgagtgta gtttggataa tgccgcatta aaaaaaaaaa cgtgaaatga 101 caatcgaaca ttgatgATTG Gagggcttat ttgtaattac gataactata 151 gtcaaacggc ccaaaccatt aataataaaa ggtgaataaa gaattttctg 201 AAAGACGAAG AAGAGAAACG AAATTCGTAG AAATGATCTC GGGCTCGGCG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: OPR1 |LOCUS: AT1G76680 |PROD: 12-oxophytodienoate reductase (OPR1) |28781740..28783361 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.21 T - 0.25 C - 0.18 1 cacaaagtcg aatcggaact gtagatgata ggaaggaaca aagaaaggaa 51 tataggttaa gttcaaagtg gttaagctct ctaatgtcgt caatgaatac 101 gtcatcatga agaaataaat aatttccaag tggatggact tggggaggtc 151 cacacatacg tcgtcaatga cgaccacgtc ccttaaggcg aaataaacac 201 TTGCCTTCCT AAATTCTCTG ATCAATCAAT GTGTATAAAT ATGCGCAGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.006 +strand -49 : -40 aCACATACGT AC RSP00230 Mean Expected Number 0.007 -strand -138 : -147 AACtTAACCT AC RSP00683 Mean Expected Number 0.006 +strand -76 : -67 tCCAAGTGGA AC RSP00862 Mean Expected Number 0.005 +strand -159 : -151 AGAAAGGAA AC RSP00997 Mean Expected Number 0.003 -strand -95 : -104 GATGACGTAT Totally 5 motifs of 5 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G76730 |PROD: the same as GENE |complement(28807830..28809678) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.24 T - 0.25 C - 0.14 1 atgacgtgga gggatgggtg gttagagaga aaagctcgcg gaagcgtatt 51 gttagaagaa gattgcttat tgggcagata aaaggcccat ttaattaaat 101 catttataag agaggttttg aaattgaaac ccaagaaggA TTGAagtgtt 151 ttcagcggga actgaaacaa atgatctaag ccgttaattt cttatctttt 201 AACAAGAGAA CAACACGGAG AACAAAGCTG AGATTTTTCG AAAACACACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.003 +strand -199 : -192 TGACGTGG AC RSP00215 Mean Expected Number 0.003 -strand -192 : -199 CCACGTCA AC RSP00227 Mean Expected Number 0.000 -strand -3 : -11 AAGATAAGA AC RSP00629 Mean Expected Number 0.009 -strand +38 : +31 AAAAATCT AC RSP00722 Mean Expected Number 0.007 -strand -5 : -11 GATAAGA AC RSP01004 Mean Expected Number 0.008 -strand -105 : -114 AaTTAAATGG AC RSP01214 Mean Expected Number 0.004 -strand -62 : -71 CCTTCTTGGG AC RSP01221 Mean Expected Number 0.005 -strand -177 : -184 TAACCACC AC RSP01275 Mean Expected Number 0.006 -strand -191 : -200 TCCACGTCAT Totally 9 motifs of 9 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: O-methyltransferase family 2 protein |LOCUS: AT1G76790 |PROD: the same as GENE |complement(28827080..28828567) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.39 C - 0.16 1 gagagagcga attttttttg gtgtacatgt ggtaaaaact cttttttttt 51 ttttatatgt gcgtgattaa cgtggttcag ttatttcgta tataatatcc 101 ctatctcttt tattttattt tattttaaat aGCAATaatt tcgtatgaaa 151 tatcttttac atcaaatatc tctataagcc tcgtctttaa aaccagacac 201 AGAAACTCCT CACTTTCGAA AAAAACAAGA TCATTACACA AAAATGGGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00943 Mean Expected Number 0.008 +strand +31 : +41 TCATTaCACAA AC RSP01596 Mean Expected Number 0.008 -strand +41 : +31 TTGTGtAATGA Totally 2 motifs of 2 different REs have been found Description of REs found 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GT2 |LOCUS: AT1G76890 |PROD: trihelix DNA-binding protein / GT-2 factor (GT2) |complement(28877953..28880183) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.10 T - 0.27 C - 0.18 1 gaaggaaagc gaaaaaagtt ccccttttaa gtcctactcc tctttttgta 51 atatagaaag aaaaactata tatatacaaa ataaagttat acgaagaaaa 101 ttgtattata tttataagat ctagataaaa tggtccatcc cacCCAATta 151 aataccccta agataaaatc acaatagaca aaaaaaattt aaaaagaaaa 201 GAAAAAGGAA ATTCAACCAC AACCTTCGTC TTCTCTTGAA ACTCTCCTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00288 Mean Expected Number 0.006 +strand -70 : -65 TGGTCC AC RSP00860 Mean Expected Number 0.010 +strand -146 : -138 AGAAAGAAA AC RSP01205 Mean Expected Number 0.004 +strand -179 : -170 CCCTTTTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ACR3 |LOCUS: AT1G76990 |PROD: ACT domain containing protein |28937056..28940444 |SUPPORT | 8 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +1225 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.31 C - 0.15 1 atggagagta taggacacgc gctataaaga acgtgtgtgg gagtgggaat 51 agttcatatt aataccacca ctaactataa tgttcgcttc gtcatatctg 101 actaattact cattaattta taaggttttt atttagttTC AATtaaatta 151 taaaaaggtt tgtcgtacta ttccactaga ttcctattaa aacctctgac 201 ACAGAAAGAA GGGTTTCAAT CTCATTAAAG AGAAAAGAAA CGATTAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.005 -strand -158 : -164 CTCCCAC AC RSP00523 Mean Expected Number 0.003 +strand -186 : -180 ACACGCG AC RSP00941 Mean Expected Number 0.007 +strand +14 : +21 TTTCAATC AC RSP01559 Mean Expected Number 0.009 +strand -184 : -179 ACGCGC AC RSP01594 Mean Expected Number 0.007 -strand +21 : +14 GATTGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: F-box family protein |LOCUS: AT1G77000 |PROD: the same as GENE |28945726..28947490 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.41 C - 0.17 1 tcaaaattaa gcactaatta tggggttttg tttattaatg tcctaaaaaa 51 gagttacaca tagagagaca ttaatgcttg cagtttagtt taaagagttt 101 taagaccata tctcacTCAA Tccttatttc cttacatttg tcgtcttttg 151 atgtcataga ctcagagata tttatttatc ttctttctct ctcatttctc 201 ATTCTCATAT TTACTTTTGA TCTCGTGGTG TTAGAATCAA AGAAACCGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.005 +strand -50 : -41 AtGTCATAGA AC RSP00445 Mean Expected Number 0.004 +strand -156 : -147 AAAAAAGAGt AC RSP00653 Mean Expected Number 0.005 +strand -16 : -6 TTCTCTCTCaT AC RSP01091 Mean Expected Number 0.005 +strand +31 : +41 tTAGAATCAAA AC RSP01167 Mean Expected Number 0.006 -strand -27 : -35 TAAATATCT AC RSP01209 Mean Expected Number 0.002 -strand -150 : -159 CTTTTTTAGG Totally 6 motifs of 6 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: mutase family protein |LOCUS: AT1G77060 |PROD: the same as GENE |complement(28956579..28958374) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.18 1 tgacataaag gcccatttct atgatgagct taagctaacc aaattataca 51 tttattgtta gattgcctct aacattttca caataccttg tggtttgagt 101 ctttgagata ctgttaccat aagataagac cgagatataa taaccacgtg 151 ctctctatta aaatcccaag cgtgtgggtc agagtctaac tcgattagag 201 AGAAGAAAAA ACTTGTTCGA GGCTTCGAAG AATGTCGATG TTAATGGCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 +strand -80 : -72 AAGATAAGA AC RSP00421 Mean Expected Number 0.009 +strand -72 : -66 ACCGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: MAF1 |LOCUS: AT1G77080 |PROD: |28960531..28964991 |SUPPORT | 7 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.25 C - 0.17 1 ggtctaaccg actggattaa aaagtcttta acaacgacaa gcttaaaaat 51 ttgcctctta gtggcttcaa aacgcaatcg tttcgcttaa tactattatt 101 ttctctatct cgtttaacca aaaaaaaaaa cgagttggag gaaaaaaaaa 151 accaagaaaa aagaataaaa agcaaaaagc attgagcgtc tccggagatt 201 AGGATTAAAT TAGGGCATAA CCCTTATCGG AGATTTGAAG CCATGGGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00024 Mean Expected Number 0.009 +strand -107 : -100 TATTATTT AC RSP00734 Mean Expected Number 0.005 +strand -133 : -126 CAAAACGC AC RSP01767 Mean Expected Number 0.010 +strand -157 : -149 TAAAAATTT Totally 3 motifs of 3 different REs have been found Description of REs found 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: L-ascorbate peroxidase, thylakoid-bound (tAPX) |LOCUS: AT1G77490 |PROD: the same as GENE |29122504..29125109 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.28 C - 0.25 1 ttagcgtgta aagcacgcgc caaccaggat tgactcaaag gcctaacgat 51 cttcaaatgt acagggccca atatactcgg cccataaact ctaaaactat 101 tcaaatgtta ggcgcgtgac gttcacctgt gaatcagctg atagaaatca 151 ttatccaata tccagttatg agtgggtgac tccaaataga tccaactggc 201 AACGCATTAT TGACACGTGT CTTTTCATTT CTCTTCTTCC GGCGTTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.004 +strand -60 : -50 ATAGAAATCAt AC RSP00143 Mean Expected Number 0.004 +strand +12 : +21 GACaCGTGTC AC RSP00143 Mean Expected Number 0.005 -strand +21 : +12 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand +12 : +21 GACACGTGtC AC RSP00204 Mean Expected Number 0.003 -strand +21 : +12 GACACGTGtC AC RSP00405 Mean Expected Number 0.007 -strand -15 : -22 TTTGGAGT AC RSP01256 Mean Expected Number 0.003 +strand +13 : +20 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand +20 : +13 ACACGTGT Totally 8 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: O-methyltransferase family 2 protein |LOCUS: AT1G77520 |PROD: the same as GENE |29135297..29137074 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.35 C - 0.15 1 tgtgtatatc gtatttgaca gaattaatag ctttcgctga tgacatgtat 51 aattttttct aatcatcgga aaattttgga ttgaagtgta gacatatact 101 gatcagtgca tgttaaaaat catatatttt gaatatgtaa agtgttcacc 151 ataatcaggc atatatagtt gcaatcgtaa agaagtactt gaacccatcc 201 CAACAATTCA TGATATGTAT CTTTCATTTA TTTCACGAAT TCCCAAGGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.006 -strand -89 : -95 CATGCAC AC RSP00460 Mean Expected Number 0.004 -strand -152 : -161 tACATGTCAT AC RSP00869 Mean Expected Number 0.002 +strand -65 : -57 TGTAAAGTG AC RSP00879 Mean Expected Number 0.006 -strand -165 : -171 CGAAAGC AC RSP00913 Mean Expected Number 0.002 +strand -162 : -153 GATGACATGT AC RSP00933 Mean Expected Number 0.008 +strand -155 : -143 TgTATAATTTTTT AC RSP00997 Mean Expected Number 0.002 +strand -162 : -153 GATGACATGT Totally 7 motifs of 7 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, similar to GB:AAD41433 |LOCUS: AT1G77540 |PROD: the same as GENE |complement(29142570..29143103) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.30 C - 0.18 1 taagttatgc acaatgagag ttttgcttta ttagctacat tgtggaaaat 51 tgaaatccta atgtacgttt attagctaca tttagccaat gaagctttcg 101 ttattttaaa atcttaaaag tcctcctaaa aattattcat aacagaacac 151 cgcggttaat aggcccatta ataggcccga taagaatcag ataaagaaac 201 ATTCCTTCGA TTTACGTTTA TTGACAAATG ACGAACACGG CGGCGACAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.006 +strand +39 : +44 GGCGGC AC RSP00807 Mean Expected Number 0.006 -strand +44 : +39 GCCGCC AC RSP00879 Mean Expected Number 0.006 -strand -101 : -107 CGAAAGC AC RSP01071 Mean Expected Number 0.006 -strand -130 : -139 tAAACGTACA AC RSP01086 Mean Expected Number 0.006 +strand +11 : +20 TTTACGTTTa Totally 5 motifs of 5 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G77655 |PROD: the same as GENE |complement(29187502..29188066) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.21 1 aacgcctctt ttttcccaga aacaaatatg tccggcccat aaaagttttt 51 cttcaaatgt ttgtaattgg tggatatata tttaaggccc aatatgagaa 101 accgacttaa tgtatatagc ccgattacat taaatcccta atgtaaccaa 151 atcgtcgctg ccttttgaat aagtttgatg tatagtagaa gacatacttt 201 ACAGGACCCC GATCGACTCT CTGATACGAT TCAAAGCGAC ATGCATACAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.010 -strand -125 : -131 TATCCAC AC RSP01017 Mean Expected Number 0.010 +strand -183 : -176 AGAAACAA Totally 2 motifs of 2 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: aminotransferase class I and II family protein |LOCUS: AT1G77670 |PROD: the same as GENE |complement(29193795..29195869) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.31 C - 0.17 1 aattcgtatt tttttatttt actttttgcc gtatgttttg ttatattatt 51 agaaaattga taaagaaaag gtttaacaac aaaactaaaa cttggcatcg 101 tcaacttcag ggcggcatgg tatggcccat gaagcatcat gagttgtgtt 151 gtaaaagccc acttgacgtc aaaagttgca acttgttgcg acaaaaggca 201 AAAATTCCTA AATTTCGAAC GAATCAAAAA CCCTAAAAAG CTTACCGAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -174 : -185 AAAAAGTAAAAt AC RSP00114 Mean Expected Number 0.004 +strand -39 : -30 CTTGaCGTCA AC RSP00163 Mean Expected Number 0.002 -strand -3 : -13 CCTTTTGTCgC AC RSP00202 Mean Expected Number 0.000 -strand -82 : -90 CATGCCGCC AC RSP00279 Mean Expected Number 0.002 -strand +36 : +28 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +28 : +36 AAACCCTAA AC RSP00438 Mean Expected Number 0.006 +strand -90 : -85 GGCGGC AC RSP00522 Mean Expected Number 0.007 +strand -42 : -36 CCACTTG AC RSP00807 Mean Expected Number 0.006 -strand -85 : -90 GCCGCC AC RSP00297 Mean Expected Number 0.000 +strand -77 : +35 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand +27 : +36 aAAACCCTAA Totally 11 motifs of 11 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 195. Group TF: ABF /AC: RSP00202//OS: Zea mays /GENE: rab28/RE: ABRE GRA /TF: ABF 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: protein kinase family protein |LOCUS: AT1G77720 |PROD: the same as GENE |29215415..29218973 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.29 C - 0.17 1 cattgatttg acaaaattag ccgttgcatt agtattactg atttgtaatt 51 ttgtaaacca agccaagaaa agagcagtac tatgtgatgg gccaattagc 101 ccaaaaacgc acatagcgaa ggcCCAATgg accttaaatc tggtatcgga 151 ttgaattcta agaaagaagg agaagcggca ataaggagtt cgaatctcaa 201 ACAAATTTCT GGGTTTTTTC TTTCCTCCAA AATTTTTAAA CAATTTCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.010 -strand -129 : -138 CTTTTCTTGG AC RSP01767 Mean Expected Number 0.007 -strand +38 : +30 TAAAAATTT Totally 2 motifs of 2 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G77890 |PROD: the same as GENE |29297017..29301054 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +374 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.19 T - 0.25 C - 0.13 1 attgatacag acttgtttta tatcagccaa acatatcaat tcagtcaagt 51 gagttaacaa tgtatgtcaa caagggggaa ttgagcaatt taaagagtta 101 aaagaccatt aactaaacag acaaagagtt taggagcaaa aagtaataaa 151 gtaataataa aaggtcaaaa agtgtaagaa aaaaagaaaa gaagaggaag 201 GTTCTGTGCA CGTAACTTGA ATTCGTAAAA GTCCATTGCT CCTTCTTCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.005 -strand -25 : -35 TACACTTTTtG AC RSP00894 Mean Expected Number 0.005 -strand +23 : +16 AATTCAAG Totally 2 motifs of 2 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G77930 |PROD: the same as GENE |29305894..29308464 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +184 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.33 C - 0.12 1 ggttgaaact ttgtaatata tttagataca acaaataagt ttgaaatctg 51 agcaatttga taatatgtgt actgaatgta tatttaatgt attattaagg 101 gactaatgtg aaacTCAATa aatcaaaggg tactattgta attttcccat 151 cgttgcgctt cagtcgtcca caaaaaaact tccgttggaa ttttctgagg 201 AAAATGAGAA AATTCAATTG AAGAAAAGAG TAAAGAAGAA GTCTCTTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01250 Mean Expected Number 0.003 +strand +9 : +18 AAAATTCAAT Totally 1 motifs of 1 different REs have been found Description of REs found 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: senescence-associated protein-related |LOCUS: AT1G78020 |PROD: the same as GENE |29343587..29344649 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.13 T - 0.35 C - 0.24 1 atcacgaatt ctattattgc atattgcaaa gtacaaacag aattaatgca 51 aaaatgttct ttttaaaata aatgtcaaga atcatgacgt ggcataatcg 101 tgacgataac ataactttga tcagaaatac tcaacggtct agATTGAgtc 151 ctgagtttat ggttcttctt tatcttccat gtctcttctc cttcctcact 201 CCCCTCTTCC CTCTCTTTAT CTCTCTCAAG ATTTGCTCTG TCCAGAGCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.009 +strand -25 : -16 TCCAtGTCTC AC RSP00113 Mean Expected Number 0.000 +strand -116 : -108 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 +strand -116 : -109 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -109 : -116 CCACGTCA AC RSP00248 Mean Expected Number 0.001 -strand -108 : -117 GCCACGTCAt AC RSP00249 Mean Expected Number 0.001 -strand -61 : -69 AGACCGTTG AC RSP00301 Mean Expected Number 0.008 +strand -176 : -170 TGCAAAG AC RSP00819 Mean Expected Number 0.001 -strand -108 : -117 GCCACGTCaT AC RSP00821 Mean Expected Number 0.000 -strand -108 : -117 GCCACGTCaT AC RSP01034 Mean Expected Number 0.003 +strand -114 : -108 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -106 : -116 AtGCCACGTCA AC RSP01275 Mean Expected Number 0.001 -strand -108 : -117 gCCACGTCAT Totally 12 motifs of 12 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G78040 |PROD: the same as GENE |29350732..29352001 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.30 C - 0.27 1 gacatgtgat caccgacaga gagagtaact acaagtctac cattatccag 51 ctgcaatcac gcaaacgcac cgcctttttc tctctttgcc aactcgttta 101 tttCCAATca taaaatgcca cgttaacaca ctcttgcagt taattgacgg 151 aaatacccct cttcacatac tacaattacg atattaatgt gttaaaaatt 201 AACGGTGTGG GCTAATCTCA CGCGCTTTCA TCATCTTCTT CCTAGATTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01023 Mean Expected Number 0.003 +strand -195 : -188 GTGATCAC AC RSP01023 Mean Expected Number 0.003 -strand -188 : -195 GTGATCAC AC RSP01034 Mean Expected Number 0.008 -strand -78 : -84 ACGTGGC Totally 3 motifs of 2 different REs have been found Description of REs found 948. Group RE: PI /AC: RSP01023//OS: Arabidopsis thaliana /GENE: GapB/RE: PI /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: methyltransferase-related |LOCUS: AT1G78140 |PROD: the same as GENE |complement(29406378..29408839) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.34 C - 0.20 1 ttaattcgaa gctttatgtt gttgttgaca agaaaatgaa gaaaccacta 51 ggcccaaaac ctagacccaa accaattata ttgaacaatg tttgggcctt 101 tatttgagga tccatcaaag accataataa aggcttctct ttcacaaatt 151 ccaaaattgt taagttttac cattttaaaa cttgtttcca cgcattttgt 201 GTGATTTCTT TCTTTGCCTT TAATAAAGCT TCGTGCTCAA TAGGCTGCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.005 -strand +13 : +5 AGAAAGAAA AC RSP00889 Mean Expected Number 0.005 +strand -13 : -7 CCACGCA AC RSP01014 Mean Expected Number 0.006 +strand -168 : -159 aAAATGAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: GRF2 |LOCUS: AT1G78300 |PROD: 14-3-3 protein GF14 omega (GRF2) |29466564..29468278 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +212 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.34 C - 0.20 1 agacccaaaa ttttataatt ccttaaggtg cctatactaa tagtagcaaa 51 atcacattac caattatttt gttaattgac caaattttat ccaataatca 101 cattaCCAAT ttttctaaaa gtgtatttat gttgttctta atttgaggtg 151 aaaaaaaatc cccctttaaa aagcaggacc ggccacaaat ccaacggccc 201 AGATTAGATC TTGGTTCCAA ATTTCACTCT TTTCCTCTAA AACGCATTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 -strand -76 : -86 TACACTTTTaG AC RSP00467 Mean Expected Number 0.003 -strand -119 : -128 TGGTCAATTA AC RSP00468 Mean Expected Number 0.001 -strand -118 : -128 TTGGTCAATTa AC RSP00870 Mean Expected Number 0.007 +strand -87 : -78 TcTAAAAGTG AC RSP00874 Mean Expected Number 0.002 -strand -30 : -40 TTTTAAAGGGG AC RSP01094 Mean Expected Number 0.006 -strand -104 : -115 TtATTGGATAAA AC RSP01482 Mean Expected Number 0.001 +strand -128 : -118 tAATTGACCAA AC RSP01497 Mean Expected Number 0.001 -strand -3 : -12 GCCGTtGGAT AC RSP01621 Mean Expected Number 0.007 -strand -76 : -85 TACACTTTTa AC RSP01741 Mean Expected Number 0.000 +strand -128 : -116 TaATTGACCAAAT Totally 10 motifs of 10 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: VQ motif-containing protein |LOCUS: AT1G78310 |PROD: the same as GENE |complement(29468549..29469946) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.35 C - 0.15 1 catataaaca cgcattaatt atttaattaa tcagagcatt atatggaaga 51 gaatccatag ataaacatac agacaaatta tttccttttc atcttattct 101 agaaaaatCC AATtaaagct acttattata gtcgtatagc ctatagttta 151 tataaaacca aaattgtttt taacttataa aatatcttta aaataaaata 201 AAAAGAGAAA AAAAAAGCCA TTTTCATTTT TTCATCATCT TCGTCTTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00535 Mean Expected Number 0.001 +strand -62 : -47 GCCT-- +6 bp --TATATA AC RSP01711 Mean Expected Number 0.008 -strand -99 : -108 CTAGAATAAG Totally 2 motifs of 2 different REs have been found Description of REs found 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ATGSTU23 |LOCUS: AT1G78320 |PROD: glutathione S-transferase, putative |complement(29472333..29473267) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.37 C - 0.16 1 atcataagcc taaatttgat caaaattttt gtccaataat tgttcgtttt 51 attgtggcta taggcaattt gcctttttcc aaagcatgtc cacttattct 101 aatcttttgt aaaaaaagat aatgaaaatg gagaattaga ttcgaaactc 151 ttctttattt tggctctata tagtgagtag ttaccactct ctcttctttc 201 ACACCGACAG CTAAAAATGG AGGAAGAGAT TATCCTATTG GATTATTGGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.008 +strand -89 : -80 AAAAAAGAtA AC RSP01013 Mean Expected Number 0.004 +strand -76 : -67 aAAATGGAGA AC RSP01060 Mean Expected Number 0.006 +strand -167 : -159 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand -159 : -167 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -167 : -159 CAATAATTG AC RSP01437 Mean Expected Number 0.004 -strand +39 : +31 AATAGGATA Totally 6 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: bile acid:sodium symporter family protein |LOCUS: AT1G78560 |PROD: the same as GENE |complement(29551498..29553717) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.32 C - 0.14 1 agtgaatgat taactaaaat atttgtaatt gatttgattt tcctaatttc 51 tttgatcatt aacatctaaa gacgccttgg atgatttgtg tgaaaaatag 101 tttaacgggg gtagagtaga gaaacaaatt taattcaggg accattttag 151 caaacaacgt gtttaattga caaaaggcac gtgagaccac gtgagtactt 201 GTTTTGGTTT CTTCTTCATC GGTCCGATCA GAGAGAGAGA ATCGCCGGTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00640 Mean Expected Number 0.001 -strand -7 : -14 TCACGTGG AC RSP00864 Mean Expected Number 0.002 +strand +30 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +32 : +40 AGAGAGAGA AC RSP00966 Mean Expected Number 0.001 +strand -25 : -16 GGCACGTGAg AC RSP01017 Mean Expected Number 0.008 +strand -81 : -74 AGAAACAA AC RSP01032 Mean Expected Number 0.009 -strand +7 : -3 CCAAAACAAG AC RSP01152 Mean Expected Number 0.002 -strand -16 : -25 CtCACGTGCC AC RSP01209 Mean Expected Number 0.008 +strand -3 : +7 CTTGTTTTGG Totally 8 motifs of 7 different REs have been found Description of REs found 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: zinc finger (B-box type) family protein |LOCUS: AT1G78600 |PROD: the same as GENE |29572104..29573752 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.09 T - 0.31 C - 0.18 1 gagaccctct cttttttttt tgataagaaa tcttcctaaa attaccacta 51 tttattattt tactaatata aatgatattt tccaacaacg acttatctag 101 aaatccaaat gattcaacta attttattta gtcagaaatt ataaataatc 151 acattttccg atgacaaata aaaatcaaag aagttgacaa caacaacaaa 201 AAATCCAAAG AGAAAACGTA TGAGTTGCTT AAACCATAAA CCTCAAGCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 -strand -184 : -193 AAAAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: integral membrane family protein |LOCUS: AT1G78620 |PROD: the same as GENE |complement(29577764..29580687) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.33 C - 0.20 1 ttgtttttct ctcttctgca aatttcttct gctctttccg atttctcgga 51 taagattggg ttctcagtaa atagtagtag tggcaacacc gtaaataatc 101 tgatgaatac gaccgaaaaa taaacacaac acgggttaag gatccgggtt 151 tttttcggag ctccggattc aacccgaaat actgtttttt ttttctcaat 201 AGGAGAGAAA GGTCTTCTTC GGAAGCAAGC TAAGTCATGG CAACGATTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.003 +strand -194 : -184 TTCTCTCTtCT AC RSP00701 Mean Expected Number 0.001 -strand -53 : -60 CCCGGATC Totally 2 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 667. Group RE: Oct (d) /AC: RSP00701//OS: Triticum aestivum /GENE: H3/RE: Oct (d) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: EMB1473 |LOCUS: AT1G78630 |PROD: ribosomal protein L13 family protein |29580849..29582551 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.27 C - 0.20 1 catgacttag cttgcttccg aagaagacct ttctctccta ttgagaaaaa 51 aaaaacagta tttcgggttg aatccggagc tccgaaaaaa acccggatcc 101 ttaacccgtg ttgtgtttat ttttcggtcg tattcatcag attatttacg 151 gtgttgccac tactactatt tactgagaac ccaatcttat ccgagaaatc 201 GGAAAGAGCA GAAGAAATTT GCAGAAGAGA GAAAAACAAA AATGGCGGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.003 -strand +33 : +23 TTCTCTCTtCT AC RSP00701 Mean Expected Number 0.001 +strand -109 : -102 CCCGGATC Totally 2 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 667. Group RE: Oct (d) /AC: RSP00701//OS: Triticum aestivum /GENE: H3/RE: Oct (d) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G78650 |PROD: the same as GENE |29587822..29590534 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.18 C - 0.28 1 ctagacccca aaatactatt cgaagaatgt acaagcccac taagaacaaa 51 taatagcaat aagaagatgg ctctcgcggc ccaacccaaa caaaatcgcg 101 tcatcacgtg agtggcacgg gcctacaGCA ATtccacaac cacatcgaat 151 cgatgacatt tccatttgct ttaagaacat ccgccgcgcg agaactggcg 201 GGAAAATTCA GCCATCGCCT CGAAGAAAAA ACCTCCCAAA TCTGAGAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.004 -strand +5 : -3 TTTCCCGC AC RSP00142 Mean Expected Number 0.010 +strand -19 : -13 CGCCGCG AC RSP00460 Mean Expected Number 0.003 -strand -39 : -48 GAaATGTCAT AC RSP00916 Mean Expected Number 0.004 -strand -96 : -105 GATGACGCGA AC RSP01013 Mean Expected Number 0.001 -strand -33 : -42 CAAATGGAaA AC RSP01605 Mean Expected Number 0.008 +strand -187 : -181 TACTATT Totally 6 motifs of 6 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1426. Group TF: SPF1 /AC: RSP01605//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8b /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: gamma-glutamyl hydrolase |LOCUS: AT1G78670 |PROD: the same as GENE |29595848..29598392 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.24 T - 0.28 C - 0.16 1 gaaattgttt tacgacgcca acgggcatag gtgatggcac ggacccgttt 51 taatgacaaa tgttggactg ggctcagtca aagcccaata taaagttaaa 101 ccactctgag aggcgcgagt gggctcagtt aatgacaaac gttttttttt 151 tctgttttat ataattttta aatgatggtg gacgttgggg atgatgtcac 201 TTGACAAGAC AGATCCTGCA GAATGATTGA TATGAAAACA AAAAAGCTAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: similar to ubiquitin-conjugating enzyme |LOCUS: AT1G78870 |PROD: the same as GENE |29655348..29657410 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.21 T - 0.26 C - 0.12 1 atatgggcct cacatataaa tggctttgat ggaccaataa gcccggaaat 51 ctgagaaaat ctatgtaata ttcgaaaact gttgggaaaa atcaataaat 101 aagtagaact ttagggaggg ttaGCAATaa acaaaggttg cgggaaaata 151 cgtaaaataa aagctaatat attatttgat tcgtccagag ttgaatttta 201 AAGATAGAGA AAGGAAATCG AATTAAAATC TTCGTCAGAT TCGAGAGACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.004 -strand -54 : -61 TTTCCCGC Totally 1 motifs of 1 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G78890 |PROD: the same as GENE |29661470..29662958 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.28 C - 0.16 1 tgtatgattg tgtctcatgt tgttttatac tcagaaaata tttgcatgat 51 gtacctgttt tgaaaaaaga cagttcttat cggagaaagt aaattttcag 101 atagggcaga aaaaggatta aaaaaggaaa ttccgataaa caagattaat 151 gctctttttc tccttatccg ttaaaaagac tagaaaaagg gaacaaccaa 201 ACCAAACCAA AAAAAAAAGG AACCATCTTT CTCCTAAATC TCTACAATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.009 -strand -153 : -159 CATGCAA AC RSP00379 Mean Expected Number 0.001 +strand -103 : -94 CaGATAGGGC AC RSP01711 Mean Expected Number 0.009 +strand -21 : -12 CTAGAAAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G78895 |PROD: the same as GENE |complement(29663009..29664869) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.23 T - 0.31 C - 0.19 1 agagttggag aagttttgat ctgattgacg aaatcgtgga gtgatccggt 51 acatgactac acacgatacg cgcgtagatc tggactttgt cgttaatagc 101 cacgtgacag tttatttatt gggctttata atatatactt acggcCCAAT 151 aagtgggtcc gtttagtcaa caaagacatg cggcttgaga atctctctct 201 CTCTCTGATC AAGCCGGAAA ATTCACAAAA GTGATCAGTT TTGTTTTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.003 +strand -102 : -93 GCCACGTGaC AC RSP00073 Mean Expected Number 0.003 -strand -93 : -102 GtCACGTGGC AC RSP00175 Mean Expected Number 0.002 -strand -95 : -102 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -93 : -102 GtCACGTGGC AC RSP00640 Mean Expected Number 0.002 -strand -94 : -101 TCACGTGG AC RSP00864 Mean Expected Number 0.001 -strand +6 : -3 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +4 : -5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +2 : -7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -1 : -9 AGAGAGAGA AC RSP00949 Mean Expected Number 0.004 +strand -37 : -30 TAGTCAAC AC RSP01034 Mean Expected Number 0.007 -strand -96 : -102 ACGTGGC AC RSP01735 Mean Expected Number 0.001 -strand -7 : -15 AGATTCTCA Totally 12 motifs of 8 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: VHA-A |LOCUS: AT1G78900 |PROD: similar to ATP synthase beta chain 2 |29665079..29669843 |SUPPORT | 21 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +277 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.31 C - 0.27 1 ttctcaagcc gcatgtcttt gttgactaaa cggacccact tattgggccg 51 taagtatata ttataaagcc caataaataa actgtcacgt ggctattaac 101 gacaaagtcc agatctacgc gcgtatcgtg tgtagtcatg taccggatca 151 ctccacgatt tcgtcaatca gatcaaaact tctccaactc tttcaatatc 201 TATCTACGTG CATCCACCTC TCTCTTCTTC TTCTTGTGAC CACTCTTCCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -117 : -108 GtCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -108 : -117 GCCACGTGaC AC RSP00175 Mean Expected Number 0.001 +strand -115 : -108 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -117 : -108 GtCACGTGGC AC RSP00280 Mean Expected Number 0.005 -strand +12 : +3 TgCACGTAGA AC RSP00640 Mean Expected Number 0.002 +strand -116 : -109 TCACGTGG AC RSP00949 Mean Expected Number 0.003 -strand -173 : -180 TAGTCAAC AC RSP01034 Mean Expected Number 0.005 +strand -114 : -108 ACGTGGC Totally 8 motifs of 7 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G78995 |PROD: the same as GENE |complement(29719972..29721004) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.25 T - 0.23 C - 0.16 1 gttactgtga ttgagaagaa ggtttagaga gacgaatctt aatgccacgt 51 aagcaggaga ttctgataag tatctaactg ggcgtttggt ggagtttgag 101 aagtatctaa attccaagcc accagaaacg gacacgtgtc taaacaagga 151 tagagtgtag aacgagaacc acttagctta agcaagacag agagtctgat 201 GAGAAAACTG CACAAGAAAA TCAGCAAGAG TAATGATAAT ACACTGTCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -150 : -157 TACGTGGC AC RSP00143 Mean Expected Number 0.003 +strand -70 : -61 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -61 : -70 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -70 : -61 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -61 : -70 GACACGTGtC AC RSP00247 Mean Expected Number 0.006 +strand -157 : -148 GCCACGTAAG AC RSP00248 Mean Expected Number 0.003 +strand -157 : -148 GCCACGTaAG AC RSP00524 Mean Expected Number 0.007 -strand -62 : -68 ACACGTG AC RSP01034 Mean Expected Number 0.005 -strand -151 : -157 ACGTGGC AC RSP01035 Mean Expected Number 0.007 +strand -67 : -61 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -69 : -62 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -62 : -69 ACACGTGT AC RSP01602 Mean Expected Number 0.009 -strand -185 : -192 TCTCAATC AC RSP01761 Mean Expected Number 0.001 -strand -174 : -185 CtAAACCTTCTT Totally 14 motifs of 11 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: photosystem II 10 kDa polypeptide |LOCUS: AT1G79040 |PROD: the same as GENE |29740911..29741831 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.25 C - 0.22 1 gaatatccta cgtggcattt gtttttttca tctcctacgt ggcattacga 51 aatgaagaaa aaactgatct gacggatctg cttaaccagt tgaagataac 101 gttagtaagg aagatatcca gaccaaagcc acacaacatt agccacgtgt 151 cataaccaca atcacttacc ggatcttctc tccctcgtat ttgaagccac 201 ACAACATGAA CATTAGGGTG AGAAGAGATC GAGAGAAGAA TAGTTTGATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -51 : -59 ACACGTGGC AC RSP00043 Mean Expected Number 0.002 +strand -192 : -185 TACGTGGC AC RSP00043 Mean Expected Number 0.002 +strand -165 : -158 TACGTGGC AC RSP00056 Mean Expected Number 0.004 +strand -59 : -50 GCCACgTGTC AC RSP00073 Mean Expected Number 0.002 +strand -59 : -50 GCCACGTGtC AC RSP00073 Mean Expected Number 0.002 -strand -50 : -59 GaCACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -52 : -59 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -50 : -59 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -49 : -60 TGACACGTGGCt AC RSP00247 Mean Expected Number 0.003 -strand -158 : -167 GCCACGTAgG AC RSP00247 Mean Expected Number 0.003 -strand -185 : -194 GCCACGTAgG AC RSP00340 Mean Expected Number 0.004 +strand -59 : -50 gCCACGTGTC AC RSP00524 Mean Expected Number 0.009 -strand -51 : -57 ACACGTG AC RSP00936 Mean Expected Number 0.000 +strand -60 : -49 aGCCACGTGTCA AC RSP01034 Mean Expected Number 0.007 +strand -191 : -185 ACGTGGC AC RSP01034 Mean Expected Number 0.007 +strand -164 : -158 ACGTGGC AC RSP01034 Mean Expected Number 0.008 -strand -53 : -59 ACGTGGC AC RSP01035 Mean Expected Number 0.009 +strand -56 : -50 ACGTGTC AC RSP01255 Mean Expected Number 0.002 -strand -51 : -58 ACACGTGG AC RSP01259 Mean Expected Number 0.002 +strand -193 : -186 CTACGTGG AC RSP01259 Mean Expected Number 0.002 +strand -166 : -159 CTACGTGG Totally 21 motifs of 15 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein, 11408 (cDNA not full-length) |LOCUS: AT1G79090 |PROD: the same as GENE |complement(29754006..29758166) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +328 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.47 C - 0.13 1 tttgacaaaa atagtcttaa ttttcagatt attagttgga tatgcatagt 51 ttattcaact tttctcttaa tatttttatt acatgatttt ttttattttt 101 ggagatttat cagttttttt tgttttaata atagttttta gataatttgg 151 aaaagcaatg atctctgcat catcaatcat aaaaattaaa aaaataaggc 201 CTCGTCGCTA TATCTTCTCT CTAGGGTTCG CTGTTGCTTT TTCATCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.003 +strand -132 : -121 AATATTTTTATT Totally 1 motifs of 1 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G79110 |PROD: the same as GENE |29764079..29765597 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.28 C - 0.17 1 aaaatttcca gtatgtaaat aaaaatagat ttacctttga acaaattaaa 51 gatatgaaaa ttccaaaaaa tgggtaatta atactatttg tttgtcccta 101 aaaataaaat ctctcttcac gttagtcgca tcgatgtgta taaataggaa 151 acaaccattt ggttgaggtt cgtttcgatt tggtcttccc tcaccaaata 201 AAAAAGAAAA GAGAAAAAAA AAGCAAAGCC ATCCTTCACG CACATCAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00858 Mean Expected Number 0.007 +strand -128 : -121 GGTAATTA Totally 1 motifs of 1 different REs have been found Description of REs found 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G79220 |PROD: the same as GENE |29803828..29805418 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +292 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.29 C - 0.28 1 aaggtttctt gcacaaaggg tgagagtctg acgccagaaa acgagagaaa 51 caaaaaaacc aaaacggcgg cgttttaaca acttcacagt tactgtatct 101 tacataatag tCCAATattt tatatctctt ttcagtttga accacattat 151 ttatttacta cccctagtcc cctactctct ctcgcttcca cgcccgactc 201 GGACTCAAAC CTGGTCCGAA TTGGCTGTGT CTCTCTCCAT CGCCTCCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00865 Mean Expected Number 0.003 -strand +38 : +30 GGAGAGAGA AC RSP01017 Mean Expected Number 0.004 +strand -155 : -148 AGAAACAA AC RSP01640 Mean Expected Number 0.008 +strand +25 : +34 CTgTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: ST1 |LOCUS: AT1G79230 |PROD: mercaptopyruvate sulfurtransferase (MST1) (RDH1) |29805586..29808832 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.28 C - 0.19 1 cagctttatc aatggatact tttgaatcgg ttcatgtttt ggtttagatc 51 agattagtta aaccggaata gaaaaatatc aaaacacaaa acgcgaagaa 101 gcacgtttgg tgaaacgaaa cgccaaagac gccctagacg tgtctctctt 151 ccagacccgt tcgtggcggc agtgacaaaa tcctctttat tgataaaaac 201 GTTTGCAAAG TTGCAACCTT TTTGGGTTTA GTACTTGAAG AGAATCAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00075 Mean Expected Number 0.003 +strand -42 : -33 GTtCGTGGCG AC RSP00442 Mean Expected Number 0.009 -strand +13 : +4 cAACTTTGCA AC RSP00734 Mean Expected Number 0.004 +strand -114 : -107 CAAAACGC AC RSP01033 Mean Expected Number 0.004 +strand +17 : +26 CCTTTTTGGG AC RSP01035 Mean Expected Number 0.010 +strand -63 : -57 ACGTGTC AC RSP01134 Mean Expected Number 0.004 +strand -53 : -44 cTTCCAGACC AC RSP01214 Mean Expected Number 0.002 +strand +17 : +26 CCTTTTTGGG Totally 7 motifs of 7 different REs have been found Description of REs found 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: inosine-5'-monophosphate dehydrogenase |LOCUS: AT1G79470 |PROD: the same as GENE |complement(29899491..29901650) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.15 T - 0.23 C - 0.15 1 tttttaaacc agaatggaac aaaaaaatcg aatatatgaa aaagtggtaa 51 actcaaaatc ggcaaaaaaa taaaaacaga aaaaaggtga gaaaatagga 101 aaaaggtaaa aaagtaaaaa aaaaaaaaaa aggaagaacc cttccgattt 151 gatttgattg ggactatata aagggaactc tataacatca tctctctcac 201 AAGTCGCAAC GCTCCAACGA CTTCAATTCA ATTTACTTTC GATTTTGTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 +strand -92 : -81 AAAAAGTAAAAA AC RSP00231 Mean Expected Number 0.005 -strand -40 : -46 CCAATCA Totally 2 motifs of 2 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: RAD23 |LOCUS: AT1G79650 |PROD: DNA repair protein RAD23, putative |complement(29977003..29980174) |SUPPORT | 12 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.25 T - 0.31 C - 0.20 1 actaaccaga actgttttgt gttagtctaa tttaatgtca tttaaagggc 51 gtagcccact aacatagggc cttactgggc tattaatatt tctttggtgc 101 atgtagaatt gtgaccagct gggccgaATT GGagatgcat gtgtcacgtg 151 gattgcacat ggcgatctct tgccgcgttt gaaatccaaa acgctctgtt 201 GCTAGAGAGA GAGACTGTTT TAGCTACGGT CAGCTTTTCT CTAGCGTCGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.007 -strand -193 : -199 TGGTTAG AC RSP00340 Mean Expected Number 0.005 -strand -49 : -58 TCCACGTGaC AC RSP00385 Mean Expected Number 0.008 -strand -16 : -23 ATTTCAAA AC RSP00640 Mean Expected Number 0.004 +strand -57 : -50 TCACGTGG AC RSP00682 Mean Expected Number 0.003 +strand -58 : -49 GtCACGTGGA AC RSP00734 Mean Expected Number 0.001 +strand -14 : -7 CAAAACGC AC RSP00864 Mean Expected Number 0.001 +strand +4 : +12 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +6 : +14 AGAGAGAGA AC RSP01598 Mean Expected Number 0.009 +strand -165 : -158 TGTCATTT Totally 9 motifs of 8 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: aspartyl protease family protein |LOCUS: AT1G79720 |PROD: the same as GENE |complement(30002020..30003938) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.36 C - 0.25 1 attttatttt tgtaacaaaa gaaaattaac atatactaaa aaaacaacca 51 aaagacattg caagttttta gtaatttggt aacaaaattg cagtaattca 101 cgtgaatccC CAATaatttg atctcatgca cacatagtgg ggtccaatct 151 tttttgttca tttgccactt ctcgccagcc tctcctcttt tgttctcttc 201 ACTACCTCCA AACTTCCCAA GAATCTCTCT TTCTCTCCTC TCTTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.005 +strand -37 : -28 GCCACTTcTC AC RSP00861 Mean Expected Number 0.008 -strand +34 : +26 AGAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: TED3 |LOCUS: AT1G79810 |PROD: |30024637..30027655 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.22 T - 0.30 C - 0.12 1 taactaagag taatgttaag agatcatcaa taaggataat tttatgtcgt 51 tagtactaat agaaccgggc cctagagttt gtaacagata tgggcctttt 101 tATTGCtatg ggcctatttt tggtgatatg ggtctttaat accatatgag 151 ccttttaaga caaaataata atctgataaa agtggtgaat caagaagact 201 AAACAATTTT GAAAGAAGAA GAAGAAAGGA GGAGACATGG ATGAATCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.007 -strand +41 : +32 TCCAtGTCTC AC RSP00192 Mean Expected Number 0.003 -strand -117 : -128 TtACAAACTCTA AC RSP00332 Mean Expected Number 0.005 -strand -56 : -63 ATGGTATT AC RSP00914 Mean Expected Number 0.009 +strand -79 : -70 GGTGATATGG AC RSP01209 Mean Expected Number 0.004 +strand -87 : -78 CTATTTTTGG AC RSP01470 Mean Expected Number 0.009 -strand +44 : +35 TCATcCATGT Totally 6 motifs of 6 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: oxidoreductase family protein |LOCUS: AT1G79870 |PROD: the same as GENE |30049639..30050920 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.24 C - 0.19 1 cctacaacaa tttgcatgaa tatcatcaaa cgtgcaatgt tgtctttaaa 51 cataagtcat gatttcggaa ccaagaggaa aacttgaaaa gggtcattta 101 gtggcccata aaaagcggat aataTCAATt atgggcccaa aaataggccc 151 atctttatcg tcaacctccg ataaattata cacagacctc tcactgactc 201 AATCATTTGC AGAAGAAAAA TAAAAAAAAA AAACAGAGAA AAGGAGATAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.007 -strand -183 : -189 CATGCAA AC RSP00918 Mean Expected Number 0.008 -strand -36 : -45 GTTGACGATA AC RSP01205 Mean Expected Number 0.009 -strand -109 : -118 CCTTTTCAAG Totally 3 motifs of 3 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G80130 |PROD: the same as GENE |complement(30145855..30147538) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.35 C - 0.18 1 attttctgtg aggatactaa actactatgt aatgatgtcg acaaaagagt 51 gaaaggtggg tcccgcattt gcccatgtgg ttatggtcaa cgtgtcaaag 101 tactagcggc tgtgttttaa tccgatcttt ttctaTCAAT ccatggtccc 151 gtagaataat ttcactattt tttcacttgg ctggtgtcaa cttagagacc 201 AATAATATAT ACACTTATCT TTTACAGTCT AAATTTAATT ATGCGGCTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.010 -strand +26 : +19 TGTAAAAG AC RSP00068 Mean Expected Number 0.007 -strand -105 : -114 GACACGTtGA AC RSP00188 Mean Expected Number 0.004 +strand -114 : -105 TCAACGTGTC AC RSP00340 Mean Expected Number 0.004 +strand -114 : -105 TCaACGTGTC AC RSP00683 Mean Expected Number 0.004 -strand -20 : -29 GCCAAGTGaA AC RSP01035 Mean Expected Number 0.010 +strand -111 : -105 ACGTGTC Totally 6 motifs of 6 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G80160 |PROD: the same as GENE |30155895..30157082 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 tcaattccaa aaggatgaat gatacaactc atatatacaa gattatagta 51 aaaagaaggg atgcatataa agaaacatag acatcatcgc catccatcct 101 cagatcagtt ccgtagttta ctggatcacg acacacacac atatacacgt 151 gtacatataa gccattctta tcaaaatgac caccttcctc ctgaattctc 201 ATTCATTATA TAGGCGTATA TTTCGGAATT CTAAGTTTTG TTGCTACGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.008 +strand -56 : -50 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -49 : -55 ACACGTG AC RSP00707 Mean Expected Number 0.000 +strand -57 : -48 TACACGTGTA AC RSP00707 Mean Expected Number 0.000 -strand -48 : -57 TACACGTGTA AC RSP00974 Mean Expected Number 0.002 +strand -57 : -48 TACACGTGtA AC RSP00974 Mean Expected Number 0.001 -strand -48 : -57 TACACGTGtA AC RSP01256 Mean Expected Number 0.002 +strand -56 : -49 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -49 : -56 ACACGTGT Totally 8 motifs of 4 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 673. Group TF: G-box binding TF /AC: RSP00707//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 2 /TF: G-box binding TF 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G80180 |PROD: the same as GENE |complement(30161718..30162476) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.15 T - 0.22 C - 0.14 1 ctcccgttta aaatacgtaa caaataaaat acaatgatta cgcatctaaa 51 catgataatc gcgattatat ttggttggat aattcgagaa ccagaagaaa 101 aaaaacatat aaaATTGAaa taataagacg acaaaagaaa attaattaga 151 aaagacacaa gtgccttcta ataaagagat aagaaagagg aggaagaaat 201 GAACTAGTCT GAAACACAAT GATGAACCAC TTTTAGCAAC ACACATCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00874 Mean Expected Number 0.009 -strand +37 : +27 GCTaAAAGTGG AC RSP01230 Mean Expected Number 0.008 +strand -197 : -192 CCGTTT Totally 2 motifs of 2 different REs have been found Description of REs found 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1135. Group RE: A-box (1) /AC: RSP01230//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (1) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: cytochrome c oxidase family protein |LOCUS: AT1G80230 |PROD: the same as GENE |complement(30174352..30175988) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.36 C - 0.16 1 gatcatatgc gttaattaat ttttaagaaa atatatatcc tacaaaaatt 51 tatttaatca tcgacagaag tttttacttt aatcttgtta catattgatt 101 ttgatttttg tttcaaatta gataatgggt caacaagtcg catgatccag 151 gcccaacagg ccgtcgccaa aaagtcgaag tcttgttcaa tcttcaattt 201 ATTCAATTCA TTTCCGTTTG AAGGAGGTAG TCGGAGACTG AGAATCATCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.009 -strand -168 : -178 TATTTtCTTAA AC RSP00838 Mean Expected Number 0.010 +strand -40 : -35 CCGTCG Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: glycosyltransferase family protein 47 |LOCUS: AT1G80290 |PROD: the same as GENE |30193213..30194618 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +264 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.37 C - 0.19 1 ttgttagtta aatgtttttc ttttacgcca taagccgtaa cataccaaga 51 aagatgtatg ggctacgttt gtttttcaaa ctctattggg ctttgcttgt 101 atttcaaact atATTGGgct tagttacata attcttatag ggctttatta 151 gtgaaaaccc acccacttgc atttatgatt cactttagct tcatgtgact 201 ATGTGAGCCG TTAATTAGCC TCTAACCGCC GAAGATGATG GTCAACTCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.004 +strand +39 : +48 TGGTCAACTC AC RSP00654 Mean Expected Number 0.004 +strand -41 : -32 CACCCACTTg AC RSP00679 Mean Expected Number 0.000 -strand +48 : +34 GAgTTGACCATCATC AC RSP00979 Mean Expected Number 0.009 -strand -140 : -149 CCATACAtCT Totally 4 motifs of 4 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 648. Group RE: O2S /AC: RSP00679//OS: Hordeum vulgare /GENE: Amy32b/RE: O2S /TF: unknown 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G80310 |PROD: the same as GENE |30199510..30201446 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +333 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.36 C - 0.16 1 tccttacatt cttttcagtt caatgtggtt tcacgttcta agtttcttcc 51 ttgtgtgtat cgttgaagtc aaaaagataa tagatttagt tcttctactc 101 tcaaactcat cagagtaaga atgagtgaag ttgggtatcg ttgagACAAT 151 tgctttattt cttctgatta acatcaatcg aatcgaggag tctttgaaaa 201 GAGTTATAAA CAATACAAAC ACTGAGTGCT GCTGAGTGAG TCTCTCTATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.008 -strand -2 : -9 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: phosphoribulokinase/uridine kinase-related |LOCUS: AT1G80380 |PROD: the same as GENE |30222157..30224863 |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.34 C - 0.18 1 tacatttttc ccccggttta ttcaaggcaa tatctggtct gcttcgaata 51 ttttatcttt ttattacagt tgacagagag acaaagcatt aattacacat 101 tatccaacgg agaaATTGTg actcacatag tatgtggcaa gaattgcttt 151 ttcgttttac gaaaaaccaa taataaaaaa ttatcaagtt ggtcttcttc 201 TTCCTCGTTG CTGATGTGTC GCTCTGCTTG AGAGAGTCAG AGAGTCAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand -31 : -23 ATAATAAAA AC RSP00039 Mean Expected Number 0.010 +strand -90 : -80 aGAAATTGTGA AC RSP00064 Mean Expected Number 0.003 +strand -72 : -63 AGTAtGTGGC AC RSP00366 Mean Expected Number 0.000 -strand +47 : +36 TGACTcTCTGAC AC RSP00550 Mean Expected Number 0.002 -strand -95 : -105 TGGATaATGTG AC RSP00933 Mean Expected Number 0.001 -strand -14 : -26 TTgATAATTTTTT AC RSP01061 Mean Expected Number 0.000 -strand -75 : -83 GTGAGTCAC AC RSP01073 Mean Expected Number 0.001 -strand +30 : +22 CAAGCAGAG AC RSP01640 Mean Expected Number 0.004 -strand -115 : -124 CTtTGTCTCT Totally 9 motifs of 9 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 351. Group RE: ERE /Group TF: TDBA12 /AC: RSP00366//OS: Nicotiana tabacum /GENE: CHN50/RE: ERE /TF: TDBA12 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: 3-isopropylmalate dehydrogenase, chloroplast |LOCUS: AT1G80560 |PROD: the same as GENE |30292682..30295189 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.31 C - 0.14 1 tgtgaggtgc tgctaataaa tggatatata tatatatata tatatatata 51 tatatatgtt gtatgtggta atgtaaggtg tccatttaca aaattaaaaa 101 ctttggggTC AATtctgaaa ataaaacaat gtgcaaaaaa ggacccataa 151 atgcaaagaa gtaaagtctg agtgtactag tagtatccat ttgacttgcg 201 GTTTCAAAAT CCGAAAAAGA CCAATCAATC CTTTCTCCCT GAAATGGCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.010 +strand +21 : +27 CCAATCA AC RSP00438 Mean Expected Number 0.005 +strand +46 : +51 GGCGGC AC RSP00467 Mean Expected Number 0.003 +strand -95 : -86 gGGTCAATTC AC RSP00492 Mean Expected Number 0.000 +strand -185 : -144 ATAaATggATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -183 : -142 AaATggATATATATATATATATATATATATATATATATATgT AC RSP00492 Mean Expected Number 0.000 -strand -142 : -183 AcATATATATATATATATATATATATATATATATATccATtT AC RSP00492 Mean Expected Number 0.000 -strand -144 : -185 ATATATATATATATATATATATATATATATATATccATtTAT AC RSP00807 Mean Expected Number 0.005 -strand +51 : +46 GCCGCC AC RSP01013 Mean Expected Number 0.003 -strand -8 : -17 CAAATGGAtA Totally 9 motifs of 6 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 468. Group RE: Zc2 A/T-2 /AC: RSP00492//OS: Zea mays /GENE: Zc2/RE: Zc2 A/T-2 /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: acetylornithine aminotransferase, mitochondrial |LOCUS: AT1G80600 |PROD: the same as GENE |complement(30303410..30305445) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.32 C - 0.18 1 gatggactaa aaaatatctg cagtcttgca ttctttttca tcgttataaa 51 taatttagaa atttcaaacc attaatacta aaaacacgta attacggaaa 101 aagtaagata ctaatcagat tctttattaa gctcagctaa accagtagta 151 gtaaaattat cactggcctt aaaaccctag aaatagaatt aatctcagct 201 ATTTTGTCTT AACGACTCTT TATTGTCCCG ACACACGAAA ATGGCGTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01072 Mean Expected Number 0.001 -strand -109 : -118 ATTACGTGTT AC RSP01261 Mean Expected Number 0.006 -strand -110 : -117 TTACGTGT AC RSP01702 Mean Expected Number 0.009 +strand -118 : -109 AACACGTAaT AC RSP01711 Mean Expected Number 0.007 +strand -24 : -15 CTAGAAATAG Totally 4 motifs of 4 different REs have been found Description of REs found 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: leucine-rich repeat family protein |LOCUS: AT1G80630 |PROD: the same as GENE |complement(30313588..30315548) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.31 C - 0.16 1 caagcccagt tttgaaattt tgaaatgaat cagtcgttag gcccaatatc 51 tgttggaaaa acaaatatag ttattgggcc attaaggaat aaaaagccac 101 aacaagccca gtttcgaaat tttaaaATTG Gataaggtta aaagccagct 151 gccagcgaaa ttgaaggatg atatatagtt agttacatac tgtgtttgtt 201 GTTAGTTTGA TTTGAGCTAA TCTTCATCAA ATCCATCATC CATGGATTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.004 +strand -69 : -58 AtAAGGTTAAAA AC RSP00943 Mean Expected Number 0.006 -strand -173 : -183 TCATTTCAaAA AC RSP01596 Mean Expected Number 0.006 +strand -183 : -173 TTtTGAAATGA Totally 3 motifs of 3 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G80670 |PROD: the same as GENE |complement(30325468..30328640) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +205 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.32 C - 0.27 1 ctgccgggtt tgtttaggat ccgtttaacc acccgacccg aaccgaattc 51 ctttccaatt aaagtcaaca ttgggccata ataaggccca aatattaggc 101 ccgataatgt ttttcctttt ttcggtatga aaatgtttta atcccagcgt 151 ctgataaacg ctgcgccgga cgtcaatgtg acgcagagag acctttataa 201 GTACTTCGTC GCATTCTCTC TCTTCCGACT CAATTCGTTT TCCCTCCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.003 -strand -14 : -23 TCTgCGTCAC AC RSP00653 Mean Expected Number 0.009 +strand +14 : +24 TTCTCTCTCtT AC RSP00864 Mean Expected Number 0.004 -strand +23 : +15 AGAGAGAGA AC RSP00918 Mean Expected Number 0.005 -strand -132 : -141 GTTGACTTTA AC RSP01032 Mean Expected Number 0.004 +strand -125 : -116 CCAtAATAAG AC RSP01205 Mean Expected Number 0.008 +strand -9 : +1 CCTTTaTAAG AC RSP01209 Mean Expected Number 0.010 +strand -85 : -76 CTTTTTTCGG AC RSP01221 Mean Expected Number 0.005 +strand -175 : -168 TAACCACC Totally 8 motifs of 8 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G80690 |PROD: the same as GENE |complement(30333961..30335695) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +279 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.32 C - 0.10 1 agattcataa atagttttaa ggaaattgta aaatggattc ataaatatat 51 ggaagtagat ttatttattg aagattcaaa actagtaata aaagctaagc 101 aagaagtctc atttctgttg ctaaaggctt tttaatcgaa aagaggaaac 151 ataattggca tcggaaatct caaaagacaa gtctcgttgg cattttgtgt 201 AATTTTAATA ATCTTGAATT TAGAGAAAAA GGGTAAAGCT TGTCATCAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.002 +strand +39 : +48 CTTGTCaTCA AC RSP00894 Mean Expected Number 0.008 -strand +20 : +13 AATTCAAG Totally 2 motifs of 2 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G80720 |PROD: the same as GENE |30341030..30342450 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.26 C - 0.21 1 taggcggcag aataacaact gccgccaaaa aaataaaaaa acgaaaatat 51 ataattacac atttacacca aagtgtgatc taaattgaac ggtgcagatt 101 agtttaacat ttatcccaaa ttttaagaac cgtacgatgg agcatcttaa 151 tgacttaaac cctaaaagaa gaaaaacccc aatcgagctc tgtcaatggc 201 TCGCTTCGTC AGATGTCTGA GAAGAACACT CTTTTCTAAT TCGTCTCCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand -36 : -44 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand -44 : -36 AAACCCTAA AC RSP00438 Mean Expected Number 0.006 +strand -198 : -193 GGCGGC AC RSP00807 Mean Expected Number 0.006 -strand -193 : -198 GCCGCC AC RSP00988 Mean Expected Number 0.001 +strand -182 : -171 CTgCCGCCAAAA AC RSP01303 Mean Expected Number 0.008 +strand -45 : -36 TAAACCCTAA AC RSP01304 Mean Expected Number 0.005 +strand -45 : -36 TaAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: NRAMP1 |LOCUS: AT1G80830 |PROD: NRAMP metal ion transporter 1 (NRAMP1) |complement(30377771..30380588) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.31 C - 0.15 1 tcactctgtt tttattttcc tcagagtccg aggtacgtac aaaaaaacag 51 aaccaccatt tttttttttt tattatttat ctaagaagaa tcttcaataa 101 aatgcaccta taaattaact tatccccgag taagaagaat aaaagaaaaa 151 aaaaataact tatcgaaaaa gtcgcatcca ttatatgtat atatatcgtt 201 GTGGAGTTGT TGTATACTAA ACAAGAAAGA GATTAGGAAG AGAGAGACGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.010 -strand -125 : -133 ATAATAAAA AC RSP00861 Mean Expected Number 0.003 +strand +24 : +32 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +39 : +47 AGAGAGAGA AC RSP01031 Mean Expected Number 0.010 +strand -114 : -107 AGAATCTT Totally 4 motifs of 4 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G80900 |PROD: the same as GENE |complement(30403042..30405232) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +470 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.31 C - 0.16 1 tgaatactaa ttgaattgat gcattaaatt attgaacaaa cattaatgaa 51 atagatagct agagcatttt ataatgaaag ttgcgttaaa ccggtaaatt 101 tgagtctcaa CCAATataaa ttagttaaga atcggtttgc attactcact 151 acatgtaatt tgatttcgtc tacaaagtac caaaacgcaa aaaaggttct 201 AACTTTTGCT TCTTCTTCGC ATTCACTCAA ACCAAACTAG AAGACGGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.003 +strand -20 : -13 CAAAACGC Totally 1 motifs of 1 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: expressed protein |LOCUS: AT1G80940 |PROD: the same as GENE |30415638..30417181 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +213 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.26 C - 0.12 1 agtcaataaa tcgtttaatg agttatttcc caaaaggaaa aaaaaaaaca 51 gtttagaaaa ggattaaaga tgaattcata aaaaaataaa gaaggttaaa 101 ggttgcatga aaatttagca aaggaataaa gagggaaaag gtcccaacct 151 aaagaatacg ataagacaac tattttcgac ttctgatttt ttttcttttt 201 GTAAGAATAA AAAACATTTT CACAAGCCTC TGTAGCTGAA GCACAAAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.007 -strand -92 : -98 CATGCAA AC RSP00735 Mean Expected Number 0.006 -strand -10 : -17 AAAAATCA Totally 2 motifs of 2 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 ------------------------------------------------------------ > A.thaliana, Chr 1: GENE: |LOCUS: AT1G80950 |PROD: the same as GENE |complement(30417436..30420005) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.31 C - 0.18 1 tctcattgat attatctgga aaataaaaaa ttccaatcgt gtggtccgtc 51 ttttgttccg actgatctat ctgacggtta agatagaaga gcgtatatta 101 aagttaccat ggaccttgat ccacaggatt aaaacacttg ttttagtttc 151 atgtttacct tttacggcga atctacgtgt gcgcgaaagc tgaaatcttc 201 ACGGGGAAAT CTAGAGACGA CGAGGAAAAA AGGATGACAC TTTCTTCAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.005 -strand -20 : -29 cACACGTAGA AC RSP00331 Mean Expected Number 0.007 +strand -98 : -90 GTTACCATG AC RSP00441 Mean Expected Number 0.008 -strand +46 : +37 AAgAAAGTGT AC RSP00879 Mean Expected Number 0.010 +strand -17 : -11 CGAAAGC AC RSP01260 Mean Expected Number 0.003 +strand -28 : -21 CTACGTGT Totally 5 motifs of 5 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: myb family transcription factor |LOCUS: AT2G01060 |PROD: the same as GENE |complement(73258..75386) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +484 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.29 T - 0.23 C - 0.20 1 acgaggatct ctgaggctaa ctaacaggaa ggaagcggga gaagagcagc 51 tgcagagtcg ctcttgttct agctgctgct gactttggtg gaccaaccaa 101 cttaatataa tggtttgggc cttagaatgg tttgggccta taccgagagg 151 cccggcttac ccagaaagaa atgcagcaat agtcaatgcc actgcctgga 201 ATTCGTCGAT CGAGCGATAA GAAGAAGACT GGAATTTTTT TGAGGAGGAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.003 +strand -38 : -30 AGAAAGAAA AC RSP00934 Mean Expected Number 0.009 -strand -93 : -102 ATATTaAGTT AC RSP01454 Mean Expected Number 0.009 +strand -109 : -103 ACCAACC Totally 3 motifs of 3 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: APG2 |LOCUS: AT2G01110 |PROD: |complement(83260..85229) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.26 C - 0.18 1 aactgacaag ccaagcgagc cctctgtgtg aactgtgaag tgaacaccca 51 tcatcactac tagtataaac ttactctatg ggccgtagta atgggcctta 101 taaagcaata aaaggcCCAA Taaagctcct ttgctttctc ctaataacga 151 cgtcgtttac attgtgttag caagtttgtg atggaagaag gtttaacgga 201 GAAAAAAAAA AGGATTGGGT TGTTTTGGAA AATATCAAAT GTGGGCAACG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: fructose-bisphosphate aldolase, putative |LOCUS: AT2G01140 |PROD: the same as GENE |complement(94810..96634) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +144 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.27 T - 0.27 C - 0.12 1 ggcaatggta ggagaaggat agtttgggta gacgaaacgg tagagttttg 51 gttattctca gattcttgtt gttgagagac tgatgaacta ctagaaaaaa 101 ttaccagtat ctccctcaag gttaaaagcg tcatttacgg taaATTGGgg 151 aataaaatgg taaagagaag gaggcttttt ggtggtggga gtaggtgatg 201 CCAAAGTAGA CGACTACTAA TAGTAGTAAA CAAAACCTTT GGCTTTAACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01202 Mean Expected Number 0.002 -strand +42 : +35 CCAAAGGT Totally 1 motifs of 1 different REs have been found Description of REs found 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATPAP1 |LOCUS: AT2G01180 |PROD: |complement(106899..108785) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +231 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.23 C - 0.21 1 actggatcat ctgacaaaac gagcagggaa ggcccataat aaggcctaat 51 aagtaaggta agcccacaga gaaatatact tacgggcttg gatttccgaa 101 ccttcctaaa aagtgggacc tacgcggctg agaagaaaga cgaaggccat 151 atcagaccgg cgataactga aaagtcaaaa gtcaaaattc aagaggaaga 201 GGAGTTTCTA ATCATGTCTC TCTCTGTTTT CTTCTTATTC TTCTATCAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.000 -strand +25 : +17 AGAGAGAGA AC RSP00894 Mean Expected Number 0.008 +strand -15 : -8 AATTCAAG AC RSP01641 Mean Expected Number 0.002 +strand +12 : +21 TCATGTCTCT AC RSP01651 Mean Expected Number 0.002 -strand -178 : -186 CTCGTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G01190 |PROD: the same as GENE |114974..117639 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.12 T - 0.28 C - 0.13 1 aatgtcatta taaaaaaaaa aaaactgaaa gaaattggac tgaaagagaa 51 ataaatttaa ccataattgt ttggtaaaaa tagtaaaata tgccaaaaat 101 gagatttaag aggaaaataa aaagaagaaa aaaaaaacag ctgtagtcta 151 catttacata caagtcgtgg actaacagct atactactac taagtactaa 201 CTCTTTCTCT CTCTAAATAT CAAATTCAAT TTAATTTTTC TTCTGCAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.005 -strand -32 : -37 CACGAC AC RSP00864 Mean Expected Number 0.000 -strand +14 : +6 AGAGAGAGA AC RSP01003 Mean Expected Number 0.007 -strand -131 : -140 ACAATTAtGG Totally 3 motifs of 3 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G01220 |PROD: the same as GENE |123275..126426 |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.27 T - 0.27 C - 0.15 1 gactaacggc gacgactccg aggctacata ctagtaaatc aaacaacttg 51 ggttttagtg caatataaaa ttattttggg cataaattgt aattatggaa 101 acgtttgggc atgaattgtt attacggaaa ctgttgggga taaATTGAaa 151 ttacggaaac tttggggggc ttaatttggc tttttgctgg cacggcaatg 201 GGAGGAGACG AAACCGAGAG AAACAATGGG AGACGCTGCG ATCCGTACCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.000 -strand -125 : -138 AAATaATTTTATAT AC RSP01017 Mean Expected Number 0.009 +strand +19 : +26 AGAAACAA AC RSP01032 Mean Expected Number 0.006 -strand -22 : -31 CCAAATTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L7 (RPL7B) |LOCUS: AT2G01250 |PROD: the same as GENE |complement(132696..134424) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +161 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.37 C - 0.15 1 ttaattattt aatctagaaa gaaataatat ttttgaaaat gtgtttatat 51 ttcggatatt tttgatacgt agccattcga tttcagtttt tcgattatag 101 aatttagtat ccttgggctt tagaaaccat gggcttttta agtaaacggg 151 ctcctgaggc ccataggtta tttagttaac ctaatttgag aagcatatat 201 ATAAAACTCA CATCGCCGCT GATAATTCCG CCTCTGAGAA ATTGCGTTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 +strand -78 : -70 GAAACCATG AC RSP00450 Mean Expected Number 0.003 -strand -136 : -147 TCAAAAATATcC AC RSP00488 Mean Expected Number 0.002 +strand -136 : -127 aTACGTAGCC AC RSP00860 Mean Expected Number 0.002 +strand -185 : -177 AGAAAGAAA Totally 4 motifs of 4 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G01260 |PROD: the same as GENE |complement(135243..137802) |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +299 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.35 C - 0.21 1 ttgcattacc gtatgattaa cttgtttata agtaagcgta taactgaatt 51 acaaagaagt ttcgggtaaa actgtaatca atcatcaaaa tgaaaaggac 101 caaaatgtaa aaacactaac ttatgaggga ttcatgtgtt atTCAATggt 151 ttttgtctct ccccctccaa ttactaacca atcgtctttc tctcttcatt 201 GACCCCTTTT TTTGAAATTA CCAAATCTCT CTCCATTTCA GCGAATCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -99 : -88 AAAAtGTAAAAA AC RSP00254 Mean Expected Number 0.005 -strand -103 : -109 CCTTTTC AC RSP00865 Mean Expected Number 0.001 -strand +34 : +26 GGAGAGAGA AC RSP01013 Mean Expected Number 0.010 -strand +39 : +30 gAAATGGAGA AC RSP01033 Mean Expected Number 0.006 +strand +5 : +14 CCTTTTTTTG AC RSP01475 Mean Expected Number 0.002 +strand -101 : -93 CCAAAATGT AC RSP01641 Mean Expected Number 0.008 +strand -50 : -41 TtTTGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G01350 |PROD: the same as GENE |complement(165145..167252) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.35 C - 0.15 1 atatgttttg agttagaact ccgtacttgt tacatgtttg agtgttatgt 51 tttatgttga atttaactaa aatgcagacg ttagtatgga atgggcttca 101 caaataaaag cCCAATagta tgtttttttg gtagggagcc caatagtatg 151 ttggttcacc caaatatcat ttctttctct gagagctgtt tattatattc 201 ACACAAAGAA GACCAACAAG AAACAGAGTT GAATCAGTTC TACAATGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00296 Mean Expected Number 0.000 +strand -109 : -87 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -87 : -109 TGGGCT-- ** bp --AGCCCA AC RSP00860 Mean Expected Number 0.003 -strand -23 : -31 AGAAAGAAA Totally 3 motifs of 2 different REs have been found Description of REs found 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G01400 |PROD: the same as GENE |174270..175616 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.38 C - 0.16 1 tttccgagaa aatgttcatg ttgaagacaa aatatgtgat cttctctttg 51 ctacaaatct gttgtaatct ggttgcaggt gaaagtcaac atgtacatgt 101 ttaatctagg cccattaaat atgaggccta tactgttttt aagcccatta 151 ctcatcattt tttattatta tatttaattt aatttcttca ttttattgac 201 ATTTCTGATA GATTAGCGGT TGCTACTGAC GCCGGAGAAG AGAGATGGCG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: phytanoyl-CoA dioxygenase (PhyH) family protein |LOCUS: AT2G01490 |PROD: the same as GENE |221251..223406 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.32 C - 0.18 1 agaatcacct tcctagttta tttctatgcg ctacttaagc gcgtgagaaa 51 gtacgatcca cgtggaacta gcttctttcg ccaacacaac acagagtttg 101 gctcacgaaa aagtgtgcgc gtggggaaga aaagggtctc atatataatt 151 ggagtgtaaa atgtttgacc tttttgtttg ggtttatctc ttttagactc 201 AACAACAGAT AAATTTGTTG GTTTCAAGTA TTATCAATTT CCCGGCGAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.007 -strand -174 : -184 ATAGAAATaAA AC RSP00280 Mean Expected Number 0.005 +strand -144 : -135 TCCACGTgGA AC RSP00280 Mean Expected Number 0.007 -strand -135 : -144 TCCACGTgGA AC RSP00682 Mean Expected Number 0.002 +strand -144 : -135 tCCACGTGGA AC RSP00682 Mean Expected Number 0.002 -strand -135 : -144 tCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -143 : -136 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -136 : -143 CCACGTGG AC RSP01734 Mean Expected Number 0.009 +strand -144 : -138 TCCACGT Totally 8 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PFS2 |LOCUS: AT2G01500 |PROD: |complement(224155..226191) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +195 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.35 C - 0.19 1 atgtttactc atttcctttt gatcttgcaa attatacgca taataataca 51 tgttatttct attgtcaagc aagtacaaga gtgtaagtgt atatctctct 101 ctatatatac atatatgtca catgtgcata aagattttgg tttatctata 151 aaacaggaca aaaggcaaag tatagtagac ccgaaaaaca atctcttggt 201 AGCCTTTTCA TCTCTCTTGC ATCACAAGTA AACCTCTCAT CATTCATTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 +strand -42 : -36 CAAAAGG AC RSP00572 Mean Expected Number 0.009 +strand -88 : -81 ATATGTCA AC RSP00727 Mean Expected Number 0.006 -strand -131 : -137 GCTTGAC AC RSP00864 Mean Expected Number 0.002 -strand -99 : -107 AGAGAGAGA AC RSP01237 Mean Expected Number 0.002 +strand -102 : -93 CTCTATATAT AC RSP01469 Mean Expected Number 0.008 +strand -83 : -74 TCACATGTGc Totally 6 motifs of 6 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: major latex protein-related / MLP-related |LOCUS: AT2G01520 |PROD: the same as GENE |235928..237130 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.31 C - 0.15 1 atgtttcgag ttcaagttat aaatcatatc aatagtaatc caaatctttt 51 tttttgtgat acgaacttgg taaacgtgaa tcacattttg taataatgca 101 agatgacaga atcgtggtaa gaaaaagtaa ctaatgtaac ttatttttac 151 gttttaaccg ttatattctc tatataaacg aaggagaaat gaaagtattc 201 ATCAAGTAAA GAAACAAACA AACAAACAAA AAACACACTT CACTCGCTAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -46 : -57 AAAAcGTAAAAA AC RSP00749 Mean Expected Number 0.005 +strand -116 : -105 ATTTTGTAATaA AC RSP01086 Mean Expected Number 0.004 +strand -55 : -46 TTTACGTTTt Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G01600 |PROD: the same as GENE |268817..272609 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.40 C - 0.18 1 cgcaaaacgc agtaaccatt cgaattaaag cataaagaca attcaaattt 51 ggtattttca tatcattttt atttttgact cgttttatat acaattgttt 101 tttgtctgaa caaATTGAct tttaaatgaa gaaaattagg agaaataaaa 151 tgaaacggaa cgagtcatca tcataaacct cgcgtccctt tttttttttt 201 GCTTCCTTCA CTTTCTTCTT CTCTGTTTCT CGTGAATTTT CCCGTGAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.001 +strand -189 : -179 GTAACCATTcG AC RSP00734 Mean Expected Number 0.001 +strand -198 : -191 CAAAACGC AC RSP01014 Mean Expected Number 0.004 +strand -78 : -69 tAAATGAAGA AC RSP01639 Mean Expected Number 0.007 -strand -158 : -167 AATTGTCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G01620 |PROD: the same as GENE |278126..279295 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 1 aaatagaagg atttaaatct atgagtaaaa gaacatgcat catttgtagt 51 tattgtcatt cttcagttta cagaatttat gtatgggctt taggcccaac 101 gtgttataat ccacaaggga atttgggctc aaagcaaagc agcccaaata 151 gctttcgacg agtcaaatta ttcaaacatt tggcttcttc gtaagataat 201 GCGAGTGGCA TTGATTCATC TGATCAATGA CAAAGGATAA GAAAAACTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00296 Mean Expected Number 0.000 +strand -77 : -55 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -55 : -77 TGGGCT-- ** bp --AGCCCA AC RSP00447 Mean Expected Number 0.010 +strand -68 : -59 AGCAAAGCAg AC RSP00778 Mean Expected Number 0.003 -strand +18 : +9 TGAATCAATG AC RSP00879 Mean Expected Number 0.006 -strand -44 : -50 CGAAAGC AC RSP01093 Mean Expected Number 0.004 +strand -72 : -62 TCaAAGCAAAG AC RSP01470 Mean Expected Number 0.010 -strand -159 : -168 TgATGCATGT Totally 7 motifs of 6 different REs have been found Description of REs found 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pux2 |LOCUS: AT2G01650 |PROD: zinc finger (C2H2 type) family protein |complement(284671..286492) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.27 C - 0.18 1 aaagatgtat atctaagcgc attgaatata caatgatttg gcccaaaagg 51 accattaatc aaaattatgg cgcactgaat atacaatgat ttggcccaaa 101 aggcccatta atcaaaatta ttgcgcaacg aggTCAATtt tttttttggc 151 ttaattgcga agagaagcaa aacagaacaa acacaaaagt cttcgacgac 201 CAAAGAACAA GATCATCCTC TGATTTTTCA GACACATATT TGTAATTTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.006 -strand +28 : +21 AAAAATCA Totally 1 motifs of 1 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 33 kDa secretory protein-related |LOCUS: AT2G01660 |PROD: the same as GENE |complement(290602..292589) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.11 T - 0.29 C - 0.16 1 attagtgtga tgatgtgtca ctcatatgaa gaaagttagc caactttcat 51 atatatgatt accaaataaa taattttgac atatagtata tcgattacca 101 aaccatataa ctgataaaca gatgataaaa atACAATata atcaaagtgt 151 ttcataatca tatagtaacg caccaatcat taaaaaaaaa aaaaagttaa 201 ACACCAAGCA TAAAAAAAAG TCGCGACGTT CTCATTCTTT CTCGAATCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00508 Mean Expected Number 0.003 -strand -67 : -78 GtATTTTTATCA AC RSP00572 Mean Expected Number 0.009 -strand -117 : -124 ATATGTCA AC RSP00915 Mean Expected Number 0.000 +strand -192 : -183 GATGATGTGT AC RSP00997 Mean Expected Number 0.001 +strand -192 : -183 GATGATGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ankyrin repeat family protein |LOCUS: AT2G01680 |PROD: the same as GENE |306384..308629 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +212 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.31 C - 0.14 1 gaaataatgt tgctgtctcg tcaaaattgg aaaaaaaata cattttaaaa 51 tacagagaaa cgaattattg agaggagaaa tttagagacc attcaggttt 101 tgATTGAaga aaaaaaagat tcccatttta tcatcttttt agtttttagt 151 gtcaactctc caacaaaagc aaaaacctta aagaattttg ttcttttttt 201 AAAGCAAAAG AACCAAACAT GGTTTCACAT GAATCCCAAT TTCATTGCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.005 -strand +26 : +18 GAAACCATG Totally 1 motifs of 1 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G01710 |PROD: the same as GENE |315725..316992 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.33 C - 0.14 1 ttgcaatatt ataaatatgg cgaaatagga aacgaattgt aagtaggtaa 51 cattataaaa gggtgaaaaa taataacata aaataaaatt gtgaaaaata 101 ataacataaa aatgaagaaa tgattttatt actaaataaa tttggtaaca 151 aataaagttt tagtttccgt ttactccaat gttactattt tttttccccc 201 GACCATTTTT ACACACAGCC AATCAGAGCC TTGTTTCATC GTCTCTTGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01056 Mean Expected Number 0.004 +strand -23 : -13 AATGTTACTaT Totally 1 motifs of 1 different REs have been found Description of REs found 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ARR14 |LOCUS: AT2G01760 |PROD: |332966..334695 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.35 C - 0.23 1 gcattctgat attgtagtgc atgaggaccg tgactttgtc tatagataag 51 attttaaagg actcgtgtat gtttacaaat aagggtagta ccaattggat 101 taattacaac agagtgccac tacagctatt accagtcgct ttcgttgcct 151 ctctcttcaa accagtggct acttactcaa cactgtacgt cttcaatcat 201 TTCTTCTTCT TTCTTCTCCA ACCAAAATCT CTTTCTCAGT TCTCTAGGGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.008 -strand -178 : -184 CATGCAC AC RSP00681 Mean Expected Number 0.003 -strand -95 : -103 TAATTAATC AC RSP00722 Mean Expected Number 0.010 +strand -156 : -150 GATAAGA AC RSP00861 Mean Expected Number 0.006 -strand +36 : +28 AGAAAGAGA AC RSP01003 Mean Expected Number 0.007 +strand -126 : -117 ACAAaTAAGG Totally 5 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G01870 |PROD: the same as GENE |complement(389469..390376) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.30 C - 0.15 1 agtattctaa ttataaaaat acttgatatg aaatataata cattttttgg 51 gactaaaatt gggcctttaa agccttatac ttggaattat cacattaaaa 101 atgggcCCAA Ttttgaatgt ctggtgatat aagactttta tgtaaaaaca 151 actccctaag aagtaaagtt atctacaact ttgccatcaa caatgtccac 201 ACAGAAAAAA ATATCATCTT CCAGAGTGGT GTAGCAGAAG AAACAGAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00358 Mean Expected Number 0.001 +strand -52 : -45 CAACTCCC AC RSP01632 Mean Expected Number 0.002 +strand -136 : -126 CTTTAAAGCCT Totally 2 motifs of 2 different REs have been found Description of REs found 343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: NADH-ubiquinone oxidoreductase B18 subunit |LOCUS: AT2G02050 |PROD: the same as GENE |489983..491993 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.27 C - 0.16 1 caacattgct gtgtactttt cctttcaatt tcaaaagttt aagtcgcatt 51 tgcaatatta taaacaattc agggttcgaa tactaaattg agagaaattg 101 tccataggct tagtaaatca aatgggcttt tggcccatat caaacgggca 151 caaatatgac ccggagaaga agaatgttcc gggtcaataa aatcgaagaa 201 GAAGAAGAGA GTATCGTTGT GAGGTTTGGG GATCGCGAAA ATGGAGGTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01103 Mean Expected Number 0.006 -strand +27 : +20 AAACCTCA AC RSP01639 Mean Expected Number 0.008 +strand -105 : -96 AATTGTCCAT Totally 2 motifs of 2 different REs have been found Description of REs found 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: TOM3 |LOCUS: AT2G02180 |PROD: tobamovirus multiplication protein 3 (TOM3) |560863..563232 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.36 C - 0.20 1 ataatatttg aattctcttt gtgtggatca agccagcttt ggtttgctct 51 ttatccacat gtgccacgtg gagcagcgtg tcagtcaact ttcaacaact 101 acttgactct cccgacgata attaccggct atctccggtt ctcgtttccg 151 acgtcggccg tttctttttc atttttgtcg ttttttttcc aaattttttt 201 ATTTCGGGAA AATAACAAAA AAAGAAAGAA ATAAAAAGAG GTGATTCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -138 : -129 GCCACGTGGa AC RSP00073 Mean Expected Number 0.001 -strand -129 : -138 tCCACGTGGC AC RSP00153 Mean Expected Number 0.001 -strand -130 : -139 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 -strand -131 : -138 CACGTGGC AC RSP00189 Mean Expected Number 0.002 -strand -129 : -138 TCCACGTgGC AC RSP00340 Mean Expected Number 0.002 -strand -129 : -138 TCCACGTGgC AC RSP00444 Mean Expected Number 0.000 +strand +18 : +31 AAaAAAGAAAGAAA AC RSP00445 Mean Expected Number 0.003 +strand +18 : +27 AAAAAAGAaA AC RSP00682 Mean Expected Number 0.001 +strand -138 : -129 GCCACGTGGA AC RSP00683 Mean Expected Number 0.002 +strand -138 : -129 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -137 : -130 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -130 : -137 CCACGTGG AC RSP00784 Mean Expected Number 0.000 -strand -129 : -138 TCCACGTGGC AC RSP00858 Mean Expected Number 0.008 -strand -75 : -82 GGTAATTA AC RSP00860 Mean Expected Number 0.001 +strand +23 : +31 AGAAAGAAA AC RSP00938 Mean Expected Number 0.000 +strand -139 : -128 TGCCACGTGGAg AC RSP01034 Mean Expected Number 0.006 -strand -132 : -138 ACGTGGC AC RSP01591 Mean Expected Number 0.000 -strand -129 : -141 TCCACGTGGCACa AC RSP01734 Mean Expected Number 0.007 -strand -129 : -135 TCCACGT Totally 19 motifs of 17 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1414. Group TF: GBF /AC: RSP01591//OS: Glycine max /GENE: SRS-4/RE: G box /TF: GBF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G02590 |PROD: the same as GENE |704936..706667 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.34 C - 0.15 1 atttttatct tgaattatat aatctttgat ttagatttta ggaaaccatg 51 aatatattca aacatgtttt atcaattaaa tgttaaacca agtattacag 101 agagtttcat agtctttact ctaaaaccac gtatgagcaa accaaATTGA 151 acgaccaaac aatttcaggc atttttgctg cttctggaaa taatatatct 201 ATTGAGTCAA CAAAGATCAG ATCAAAGCTG AACTATAAAA ATGGCGATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.003 -strand -63 : -72 GCtCATACGT AC RSP00331 Mean Expected Number 0.005 +strand -159 : -151 GAAACCATG AC RSP00894 Mean Expected Number 0.009 -strand -185 : -192 AATTCAAG AC RSP01139 Mean Expected Number 0.001 -strand -69 : -77 ACGTGGTTT Totally 4 motifs of 4 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: UDP-galactose/UDP-glucose transporter |LOCUS: AT2G02810 |PROD: the same as GENE |801529..803435 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.29 C - 0.23 1 gtttttacga ttagaaaacg gcgtgtagtt tatatttata attcaaacac 51 ggaaaccatt tcacgagctg cactccaaaa gtacacgcgt catcgttaaC 101 CAATcagaaa cgtcaagtga gatcatcagt ccagtgatta gcttccacgt 151 ggaacatcga cgtatctatt ttcgcgcctt tgtaacagct tcatcttccc 201 AAATCCAAAA CAAACATTTT TAGTTTGCGA TTCTCGGATT CGATCAGTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 -strand -110 : -119 GACGCGTGTa AC RSP00280 Mean Expected Number 0.007 +strand -57 : -48 TCCACGTgGA AC RSP00280 Mean Expected Number 0.005 -strand -48 : -57 TCCACGTgGA AC RSP00405 Mean Expected Number 0.007 -strand -122 : -129 TTTGGAGT AC RSP00523 Mean Expected Number 0.008 +strand -118 : -112 ACACGCG AC RSP00682 Mean Expected Number 0.002 +strand -57 : -48 tCCACGTGGA AC RSP00682 Mean Expected Number 0.002 -strand -48 : -57 tCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -56 : -49 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -49 : -56 CCACGTGG AC RSP00938 Mean Expected Number 0.000 +strand -58 : -47 TtCCACGTGGAA AC RSP00938 Mean Expected Number 0.000 -strand -47 : -58 TtCCACGTGGAA AC RSP01086 Mean Expected Number 0.007 -strand -85 : -94 TTgACGTTTC AC RSP01274 Mean Expected Number 0.005 +strand -44 : -35 TCgACGTATC AC RSP01509 Mean Expected Number 0.001 +strand -102 : -94 ACCAATCAG AC RSP01692 Mean Expected Number 0.005 +strand +39 : +46 TTCGATCA AC RSP01734 Mean Expected Number 0.008 -strand -48 : -54 TCCACGT Totally 16 motifs of 12 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ARPN |LOCUS: AT2G02850 |PROD: |complement(826542..827785) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.36 C - 0.20 1 tcaaaaccaa actcttatct tcaataatga gacaaaagaa accgaagtta 51 agtctataat caatttctac atagacaatg tggccaaaaa taataaatga 101 acatatatca tgggttgttg agacacCCAA Tttaataaaa taaaaacatt 151 gaatgtctta ttttcttctt ctttaaaaac cctttgtaca tttactcttc 201 AATTCATCCT CATTTACTCT CTATAGTTTC TCTCTCTTTC TCTAAACTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00145 Mean Expected Number 0.007 -strand -85 : -90 AACCCA AC RSP00163 Mean Expected Number 0.000 -strand -162 : -172 tCTTTTGTCTC AC RSP00227 Mean Expected Number 0.007 -strand -180 : -188 AAGATAAGA AC RSP00596 Mean Expected Number 0.004 -strand -117 : -122 GCCACA AC RSP00653 Mean Expected Number 0.005 +strand +28 : +38 TTCTCTCTCtT AC RSP00716 Mean Expected Number 0.004 +strand -199 : -191 CAAAACCAA AC RSP00861 Mean Expected Number 0.004 -strand +41 : +33 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +37 : +29 AGAGAGAGA AC RSP00881 Mean Expected Number 0.001 -strand -79 : -88 cTCAACAACC AC RSP00950 Mean Expected Number 0.000 -strand -79 : -89 CTCAaCAACCC Totally 10 motifs of 10 different REs have been found Description of REs found 141. Group TF: SEF3 /AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 2 /TF: SEF3 ||Identical REs AC: RSP00338 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RNS1 |LOCUS: AT2G02990 |PROD: ribonuclease 1 (RNS1) |873505..874810 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +208 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.25 C - 0.20 1 ggcttgctta aaaacataaa tataaaatat tattgggccg ttacgtgcat 51 acaaaacgaa ccttctaaca aacaagtgtg aacgttacga cttcaaaatt 101 aaaaaaaaac acaacaacta tgtccacacg taatctcata tgattcagat 151 tccaaggaga acaaaattaa aaacaaatct cgtaaacata catacacttc 201 ACATAAAACA AAAGGTACAG TATATACCAT AAATCTCCGA GATTCTTTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01087 Mean Expected Number 0.002 -strand +20 : +13 CTGTACCT Totally 1 motifs of 1 different REs have been found Description of REs found 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: signal peptide peptidase family protein |LOCUS: AT2G03120 |PROD: the same as GENE |937419..940310 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.37 C - 0.19 1 attgactaac cataaaagaa aacagatatg catgtgtgat gtggtgatga 51 atgcaataat caaccaatta aaatgcgaac gtaatgtcat agacacgtga 101 gcgttaCCAA Tgaaataagt ctgtcacgta attaggtcac agtcccgtaa 151 ctttcgtggt cttcgagtat cttaattttc tttccttaac tcttctcttt 201 CTCTTCTTCT TCTTCTTCAT CTTTTTTTTT TTAACAGATC TGGTGGAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 -strand -100 : -109 CtCACGTGTC AC RSP00232 Mean Expected Number 0.007 +strand -117 : -108 AtGTCATAGA AC RSP00524 Mean Expected Number 0.007 +strand -108 : -102 ACACGTG AC RSP00861 Mean Expected Number 0.004 -strand +2 : -7 AGAAAGAGA AC RSP01035 Mean Expected Number 0.007 -strand -103 : -109 ACGTGTC Totally 5 motifs of 5 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G03350 |PROD: the same as GENE |complement(1019576..1021183) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.32 C - 0.16 1 aaagaaaaat ggaaacttga attttagtaa tttcaaaatt cattagacgg 51 ttagagagtc ttcatcattg tttaaacatt tccttaattt gacatttagc 101 catcaaaacg gaaatttagt tggaaaataa agtaaatgac gaagttacgt 151 aaatgccccc ggttctttca tatttcttca aaacagtttt tggccaatgg 201 AGAAAGAAAA ATTGAGAGTC GCCACAGCTA TCACTCTGCT CTGTCACTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.006 -strand -162 : -173 ATTTTGaAATTA AC RSP00860 Mean Expected Number 0.004 +strand +1 : +9 AGAAAGAAA AC RSP00894 Mean Expected Number 0.008 -strand -178 : -185 AATTCAAG AC RSP01013 Mean Expected Number 0.007 +strand -7 : +3 CcAATGGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATUPS1 |LOCUS: AT2G03590 |PROD: expressed protein |1094754..1096915 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +372 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.35 C - 0.17 1 tacttcacct ttttgttttg aatttttttt tttataatga ttttaagaca 51 agattgtgtc agccgttgac ttatgatcaa ctaggaacct aatcggaacg 101 caactcgaga ttcattttat ttattttata ctacaaaatt atcttgaaaa 151 atatatcgag gaaggtgtca tatctcatgg aatccgaatc tgccaataat 201 ATGAGAGCCA CTAGCAATTA TTCTGAATCT CCCCAAAGGG AAGAATCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 -strand -17 : -25 GATTCCATG Totally 1 motifs of 1 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: sulfotransferase family protein |LOCUS: AT2G03750 |PROD: the same as GENE |complement(1147804..1149058) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.32 C - 0.19 1 cacatgcact agccactaga cactagtaca cgactaaact acaattccaa 51 agagtcaaaa tctatcaagt attttttttt tttcaagata agatttctta 101 tcgtaatata ggaaatgtgt ggcttaagat ccacgcatga ttaaaacaaa 151 tccctaaaca ctttgtctat gaaatataac catctgcttg taaggtcaaa 201 TTGTTCAAAG CATCAAATAA GTAAATAAAA ACTCTTTTAT GTTCACCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.009 +strand -198 : -192 CATGCAC AC RSP00227 Mean Expected Number 0.003 +strand -116 : -108 AAGATAAGA AC RSP00234 Mean Expected Number 0.001 +strand -15 : -6 GCTTGTAAGG AC RSP00441 Mean Expected Number 0.010 -strand -34 : -43 gACAAAGTGT AC RSP00596 Mean Expected Number 0.008 -strand -78 : -83 GCCACA AC RSP00889 Mean Expected Number 0.005 +strand -70 : -64 CCACGCA AC RSP01076 Mean Expected Number 0.001 -strand -62 : -71 CATGCGTGGa Totally 7 motifs of 7 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: eukaryotic translation initiation factor 1A |LOCUS: AT2G04520 |PROD: the same as GENE |complement(1574589..1575856) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +620 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.31 C - 0.17 1 actgtttttt ttcttttttt taagaaaggt tttacggtct tagatccaaa 51 attgatataa tactcaaacc gaactaacga tttttcaatc caaccaaata 101 gaaaatcgaa aaactaaacc aaaccaaatg tcagatactc agATTGAatg 151 agtggtaagg ttccgtaata aaacctaaaa ctaagggcaa caatcaaaac 201 ACGTTTACTT TTATTATAAA CAGATTTCTG GAGATATCGA GAACATTTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.009 -strand +17 : +9 ATAATAAAA AC RSP00445 Mean Expected Number 0.009 -strand -182 : -191 AAAAAAGAAA AC RSP00941 Mean Expected Number 0.009 +strand -118 : -111 TTTCAATC AC RSP01046 Mean Expected Number 0.001 +strand -115 : -107 CAATCCAAC AC RSP01594 Mean Expected Number 0.009 -strand -111 : -118 GATTGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G04700 |PROD: the same as GENE |1646805..1648554 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.31 C - 0.20 1 gaaccaaact aatttcacca actcgaaccg aaaccaaaac tcgatttttt 51 cattcataat tctactcaaa ttctttatct aaaccgaatt gaaccgaaag 101 ttttgaagca aagtttgaac cgattcgatg gtcgaattcc ggttatttcc 151 ggtttgagga taagctttat cattctctga gagtctctct ctctgtgagt 201 GGCGAGCATT GGTTTCTGGA AAATGAACAC AAAAAAATAT CTGAAAATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.003 -strand -36 : -45 GCTTATCCTC AC RSP00864 Mean Expected Number 0.001 -strand -7 : -15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -9 : -17 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G04845 |PROD: the same as GENE |complement(1702220..1704000) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.31 C - 0.13 1 tattatgatt tttcattgaa gtctttgctt tgaagctaag tgaaactcaa 51 acactctcca caacacagtt ggttggttgt gtaatatttg gacatctttt 101 taattatgat aaaatatgac gtggataaaa tatgccagct cggataacag 151 taaacgacgt cgtttcttat ttctgattga ttctctgtag agaagaggaa 201 GAGAAGAAGA ATGGTGACAA GAATGGCGAC GAAGGTGAGT TTGGAAGGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.003 +strand -84 : -77 TGACGTGG AC RSP00215 Mean Expected Number 0.003 -strand -77 : -84 CCACGTCA AC RSP00748 Mean Expected Number 0.001 +strand +9 : +20 GAATGGTgACAA AC RSP01080 Mean Expected Number 0.001 -strand +40 : +29 ACTCACCTTCGT AC RSP01093 Mean Expected Number 0.002 -strand -168 : -178 TCaAAGCAAAG AC RSP01275 Mean Expected Number 0.005 -strand -76 : -85 TCCACGTCAT AC RSP01631 Mean Expected Number 0.001 -strand -166 : -176 CTTCAAAGCAA AC RSP01634 Mean Expected Number 0.001 -strand -166 : -176 CTTCAAAGCAA AC RSP01635 Mean Expected Number 0.001 -strand -166 : -176 CTTCAAAGCAA AC RSP01638 Mean Expected Number 0.002 -strand -166 : -176 CTTCAAAGCAA Totally 10 motifs of 10 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1 998. Group TF: DcMYB1 /AC: RSP01080//OS: Daucus carota /GENE: DcPAL1/RE: box-L2 /TF: DcMYB1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1454. Group RE: TERE /AC: RSP01634//OS: Arabidopsis thaliana /GENE: At3g62160/RE: TERE /TF: unknown 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G04900 |PROD: the same as GENE |1722478..1723828 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.25 C - 0.17 1 cttgtgtagg ttaagaagtg atctttcggt ggaagtcgat aagggatttg 51 gttttgcaag tgagagatcc aaccaaagct cgcagctgaa gcaaaaggaa 101 gaatcttttt agttgctgta gtgaagaaaa taacacatca catacgacgt 151 cgttttaggc ttaaaccgaa taagacccga tcaccgactt gacacatctc 201 GCTTAAAGTC TCTGGTCAAA TGGGAAATAG TGTAAGAAGC AATCTAAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.001 -strand -145 : -153 CAAAACCAA AC RSP01031 Mean Expected Number 0.006 +strand -101 : -94 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: scramblase-related |LOCUS: AT2G04940 |PROD: the same as GENE |complement(1736482..1740385) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.33 C - 0.18 1 tcttgactgg aactcaaaca taagagtggt actactaatt ttttattttc 51 gaatagtggc ataagaggtg agccttcaca ttttatgttg attttgacca 101 tttttccgat aactttcaaA TTGCctaaga tagtttgtaa ctacaaaatt 151 taattgtaaa cattgcctaa catattcacg taattacgaa attgcacttt 201 AGAACTTCCA AATTGTAAAA CTTCGGCTCC CACAGGGGAA ACAAAGCGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.002 -strand -7 : -17 CAATTTCGTAA AC RSP00122 Mean Expected Number 0.006 +strand +27 : +33 CTCCCAC AC RSP00211 Mean Expected Number 0.009 +strand -166 : -156 CTAATTtTTTA AC RSP00749 Mean Expected Number 0.005 -strand -9 : -20 ATTTcGTAATTA AC RSP00749 Mean Expected Number 0.005 -strand -52 : -63 ATTTTGTAgTTA AC RSP01743 Mean Expected Number 0.000 +strand -110 : -98 aTTTTGACCATTT Totally 6 motifs of 5 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATVPS11 |LOCUS: AT2G05170 |PROD: |1869882..1873809 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.40 C - 0.13 1 ggattaggat ctaatatgca ataaaaccta atttttcctt tatacgatta 51 actttataaa atctcagttt ataagttaaa ttaaattttg taaatttaaa 101 aATTGTttat aaattcctat gaattgccaa attttatttt aaactaaaat 151 ttcacatgtt aatatagaaa aaaacattaa tttttgtatt tgttttcatc 201 AAATGCAAAT ACAAGATTTC TCCATTGAGA CCTTTTCGAC CGTAAACCGA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: lipase class 3 family protein |LOCUS: AT2G05260 |PROD: the same as GENE |1918332..1920039 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +395 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.28 C - 0.20 1 ttttgaacaa aatcttttta tttttccaaa caacccaaac accacataaa 51 aatgttaagc gcttgccgac aaaaaaaaaa caaagaaacg cttttacgaa 101 acgtgtcaaa tttaattagt ctaaaacgcc gtcgtttctg tataaccatc 151 caacagatcc ttgtgcttct ttttcattac aaggaagact ttttcattac 201 AAGGAAGATC GATCACGGAC AAAATTTGCA GAGACATTGT AGACAAAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.009 +strand -165 : -158 CAAACACC AC RSP01035 Mean Expected Number 0.006 +strand -100 : -94 ACGTGTC AC RSP01078 Mean Expected Number 0.002 +strand -59 : -48 ATAACCATCCAA AC RSP01640 Mean Expected Number 0.006 -strand +39 : +30 CaATGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G05310 |PROD: the same as GENE |complement(1933271..1934174) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.27 C - 0.17 1 aaaaaggcct ggtttacaca ttctctcttt tattaaattg attcggttta 51 gttcaaatgt tccactgcaa atggagtgtc taatacaaaa aatcagaaca 101 caaagagagg taagaagagg ataaggtttt agtctacaag tttgccaaat 151 gtcactacaa atgccacata tatctccaac taatatatac aaaaaaaatc 201 ATATACAAAA ACAAAACGTT TAGTTGTTGG AAATGGCAGC AAAACTCTGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.004 -strand -168 : -177 AtAAAAGAGA AC RSP01013 Mean Expected Number 0.009 +strand -133 : -124 CAAATGGAGt Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: integral membrane family protein |LOCUS: AT2G05755 |PROD: the same as GENE |2170890..2173757 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.37 C - 0.16 1 tttttgtgtt atcctttttt gtacttggtt tggtttgatt taaatgaatg 51 aaaataagtt gttttaaaaa aaaaaaaaaa aaaaaatgaa aagtcattga 101 agttaacgtc gcatttaacg gcaaacgtta aaACAATcta ttttgaaacg 151 tcgtcgtctt ttgactcttc gttatctttc cgtttcgtct gttagattct 201 GTTTTCGTAG CCATGGCTTC TTCGTCTCCG GAGACCAGAA TCGCCGACGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.009 +strand +43 : +48 GCCGAC AC RSP00628 Mean Expected Number 0.006 +strand -69 : -62 AACAATCT AC RSP00779 Mean Expected Number 0.000 +strand -114 : -101 TGAAAAGTCATTGA Totally 3 motifs of 3 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 734. Group RE: Box IV /AC: RSP00779//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box IV /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G06005 |PROD: the same as GENE |2332544..2336153 |SUPPORT | 14 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.31 C - 0.20 1 ggttccgatt cggataatcg attcgggtgt tttttgccca gccttactac 51 cgctttcttg aacaccggag tttttgcata ataattaatt aacaatatat 101 cagacaaaca aaataaaata aaaatatgtt tccggccggt gtaatttgtc 151 tgcaatcgac ttctctgatc aaaatgttga cataaatctc aaatcgaatc 201 AATTACTTTA GAGATTTCCC AAATTCCGTC TCGAAGATGT CAACGGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.003 -strand -73 : -84 cATATTTTTATT AC RSP00521 Mean Expected Number 0.004 -strand -171 : -177 ACACCCG Totally 2 motifs of 2 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: membrane protein, putative |LOCUS: AT2G06520 |PROD: the same as GENE |complement(2587781..2588355) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.27 C - 0.25 1 tctgagagat ttgagaacca aaattgttag aatcgaaccg aaactatgca 51 cctctcaatt cggttatgtc aattatcgaa ccggactcga agtacgatat 101 tttttttcac gcCCAATagc aaccacagta atcgcaaatg aagataacgt 151 tatctatcca atgagccatt aggaagctca gaagctgcca cgtaagattc 201 ATATCTCACA TCTCCAATCT CTGAACATCA CTAACCTCAA ATCTCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -7 : -14 TACGTGGC AC RSP00247 Mean Expected Number 0.004 +strand -14 : -5 GCCACGTAAG AC RSP00248 Mean Expected Number 0.003 +strand -14 : -5 GCCACGTaAG AC RSP01013 Mean Expected Number 0.005 +strand -66 : -57 CAAATGaAGA AC RSP01014 Mean Expected Number 0.008 +strand -66 : -57 CAAATGAAGA AC RSP01034 Mean Expected Number 0.007 -strand -8 : -14 ACGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 40S ribosomal protein S16 (RPS16A) |LOCUS: AT2G09990 |PROD: the same as GENE |3788411..3789132 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.22 T - 0.34 C - 0.09 1 aaaaaaaagt attgttttgg aaatatatga ggaagagaaa atgagagaag 51 aagtagtgca ggcgaaggag aagcaatgtt tggtgtttta taagagagac 101 gatagtagta actagtgacg tggaatATTG Attttaattt tttagtttta 151 ttttatttat tgaacatttt atcaaaacgc cgcgtattag agaggatgcc 201 CTAGTTTAAT GTCTTGGTAT AAAAGCCTAT ATTTTGCATT TTTCATCCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.006 -strand -77 : -86 TCCACGTCaC AC RSP00142 Mean Expected Number 0.000 +strand -23 : -17 CGCCGCG AC RSP00214 Mean Expected Number 0.002 +strand -85 : -78 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -78 : -85 CCACGTCA AC RSP00233 Mean Expected Number 0.009 -strand -77 : -86 TCcACGTCAC AC RSP00483 Mean Expected Number 0.009 +strand -22 : -18 GCCGC AC RSP00734 Mean Expected Number 0.001 +strand -28 : -21 CAAAACGC AC RSP01275 Mean Expected Number 0.004 -strand -77 : -86 TCCACGTCAc AC RSP01733 Mean Expected Number 0.003 +strand -21 : -16 CCGCGT Totally 9 motifs of 9 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G10940 |PROD: the same as GENE |complement(4317494..4319185) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.33 C - 0.19 1 acacgttgtt aaaagttgta gttaacccaa gaacaagagg cacttagaaa 51 aaaaaaagtg aaaaaagtgt ggtcgacatg tgatgatata tagcgatggg 101 tcatcaagga aatcttgtat tcttatgata ATTGCcaacc atgcttattt 151 tggggcgtct cttcttattg cagaagtagc ccccatcttc acgtgaattc 201 TTCTTCTCAT TTTCCCTCTA TATATTCATA TACTCTTTCG TATAGTTACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -148 : -137 AAAAAGTgAAAA AC RSP00441 Mean Expected Number 0.008 +strand -140 : -131 AAaAAAGTGT AC RSP00445 Mean Expected Number 0.010 +strand -149 : -140 AAAAAAGtGA AC RSP01032 Mean Expected Number 0.009 -strand -48 : -57 CCAAAATAAG AC RSP01209 Mean Expected Number 0.008 +strand -57 : -48 CTTATTTTGG AC RSP01237 Mean Expected Number 0.001 +strand +16 : +25 CTCTATATAT AC RSP01237 Mean Expected Number 0.009 -strand -106 : -115 CgCTATATAT AC RSP01601 Mean Expected Number 0.007 -strand -138 : -145 TTTCACTT Totally 8 motifs of 7 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: BSD domain-containing protein |LOCUS: AT2G10950 |PROD: the same as GENE |complement(4322495..4324944) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 agtttacata taaaatgacc attcttaaaa acatcacgta taaaacgata 51 ttttcccgtt ttaaaaagta ggttttgttt ccgtttattt tgtataatta 101 ttgttcgttt atttcacgtt tgggaaggta tcaaaacgaa caaacaacaa 151 acggtgcgtt ttggaaaggt attaaaacgt accgtttctt ctctcttgct 201 ATTCGTAACC CCGTGCAAAA AAAACTGAAA ACCCCAAATC CAACCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.002 -strand -38 : -45 CAAAACGC Totally 1 motifs of 1 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G10970 |PROD: the same as GENE |complement(4339921..4340661) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.37 C - 0.17 1 acaatgaatt tttgtttttt tctctctttt tcgatacact cttttattat 51 tagcgttgac aagtttattt ttcctctatc gttcattcca aacctataaa 101 taacatatca tgtttaaaac ttgtggaact aaACAATgga caatttaaac 151 cattgacaca acaaaagtta atatatgtac aaacttcaat ctactatttc 201 ATTTAAACCT ATAGTCAAAG AACAAGCTTT GTTGAACATA TAAAACGATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01639 Mean Expected Number 0.009 -strand -56 : -65 AATTGTCCAT Totally 1 motifs of 1 different REs have been found Description of REs found 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ABC transporter family protein |LOCUS: AT2G13610 |PROD: the same as GENE |complement(5680770..5682913) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.33 C - 0.21 1 gcccgtgacc aaactcaaaa atttcaactc tcttcactta aatccaatac 51 aagttacaga aatctagctg tcttcttact tcttagtctt ttgaaccatt 101 tatgaCCAAT ccaatactaa ttcaaagttt cttataacaa taacacattt 151 agtacaagac atatataatt ggttttgttc tattacttgt cctttttctt 201 ACGCCACTAT AGCATTGGAA AAGAAAGAAA GAGAGAGAAC AAAGCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand +21 : +34 AAGAAAGAAAGAgA AC RSP00653 Mean Expected Number 0.000 -strand +39 : +29 TTCTCTCTCtT AC RSP00716 Mean Expected Number 0.000 -strand -24 : -32 CAAAACCAA AC RSP00860 Mean Expected Number 0.002 +strand +22 : +30 AGAAAGAAA AC RSP00861 Mean Expected Number 0.001 +strand +26 : +34 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +30 : +38 AGAGAGAGA AC RSP01030 Mean Expected Number 0.008 -strand -69 : -76 AGAAACTT Totally 7 motifs of 7 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PRLI-interacting factor, putative |LOCUS: AT2G13690 |PROD: the same as GENE |complement(5713589..5716039) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.26 C - 0.16 1 tttttgaaga aaaattgaat taggttggta ttcaatttta aatcatgaca 51 gcaatgtatc cacacatgtt caaaaaaaaa tgaatctagg gaattgtgtc 101 aattaaccat gtatgattTC AATatctaaa atctaacaat gatgaaagta 151 aaaagaaaaa aacaagtttg cataaaaaga agaaacagaa atagaaagcc 201 AACACAAAAC AGTAATCTCT CAGACTACAA CTTTACTCAC TTCACCAGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00999 Mean Expected Number 0.006 +strand -82 : -72 TCAaTATCTAA AC RSP01454 Mean Expected Number 0.001 -strand -172 : -178 ACCAACC Totally 2 motifs of 2 different REs have been found Description of REs found 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G13820 |PROD: the same as GENE |complement(5781253..5783371) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.29 C - 0.18 1 ttcatagaaa tattctacca atctggaaga acgaccgatt ttagacaaat 51 ataatttatt ccataaagca ttttacacac tgagaaagta atgattcatg 101 tcttctcttt cggcgaaaaa tataaaaaaa taaACAATaa taatatatga 151 aaaaggcaat tccatttatt tagcatgcta gagagcacca aaagagactc 201 ATCATTCACA ATGGCATATG CAACTATTCT CATGATCTTC TCGGTGGTGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.004 -strand +45 : +39 ACCGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: dynamin-like protein 2b (ADL2b) |LOCUS: AT2G14120 |PROD: the same as GENE |complement(5960278..5967205) |SUPPORT | 20 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.33 C - 0.17 1 acatttttac aaaaggttat tagaataagg atagttttgc aaatctccca 51 tctcccttaa aaaaatagtg caatctacat ctcaaataag atgatatatt 101 atcctttaaa aaataacata aaattacata atttctcaaa aagaaataac 151 tccgaaaatt acacaaatat ttagagatat tattaactct gatttacttt 201 AATCGGCGCG TGATCGAGAA AGATCTTCTT TAACCTCTTT GCAACAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.010 -strand +43 : +37 TGCAAAG AC RSP01559 Mean Expected Number 0.002 -strand +11 : +6 ACGCGC Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: UNC-50 family protein |LOCUS: AT2G15240 |PROD: the same as GENE |complement(6622607..6626045) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.20 T - 0.22 C - 0.16 1 ttttaattag tgtgtggttg cttaaaaaaa atatgattca ctttttaaaa 51 ggaacggttt acgacaaaaa aaaaaaacaa aggaacggtt tagtataatt 101 tgtaccgaac gcagaccgca actgcaaaaa agaagcgtct gggtgcgatt 151 gcggtataag cgaacaatcc ctaaacccga aaataaccaa aaggaaaaac 201 GCAGAGAATT CGAACCAGAG AGATCTTTCG AATCAAAACG ATCTGAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01084 Mean Expected Number 0.001 +strand -86 : -78 ACCGCAACT Totally 1 motifs of 1 different REs have been found Description of REs found 1002. Group RE: DRE1 /Group TF: HaDREB2 /AC: RSP01084//OS: Helianthus annuus /GENE: sHSP/RE: DRE1 /TF: HaDREB2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RBP36A |LOCUS: AT2G15430 |PROD: |6740648..6742757 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.32 C - 0.18 1 tttgacaaaa aaaaaaagaa aaaagaaaaa ggaaaaggta taaaaaaaaa 51 catttgagtt gggcttatat gggcctgttt gaaatttggt gacattactt 101 ttcgccaaaa gaattaaaaa ggcccatata ggcccaactt taaacattac 151 tctaatattt atatctttct cacttttgct ttattctgat ttcttctcct 201 ATCTCCTTCT CCGGCGAAGA AATTGAAAAT TCATTATCCC TAAAACCCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +51 : +43 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +43 : +51 AAACCCTAA AC RSP00574 Mean Expected Number 0.007 -strand -13 : -20 CAGAATAA AC RSP00297 Mean Expected Number 0.000 +strand -80 : +50 GGCCCA-- ** bp --ACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -70 : +50 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.006 +strand +42 : +51 aAAACCCTAA Totally 6 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G16460 |PROD: the same as GENE |complement(7140474..7142734) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +169 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.18 T - 0.25 C - 0.15 1 gtattttcat cgaaatccct tgctaattta ataatctcgt tgaagattag 51 agaaagaaat actaaaagct ggaagagaag aactttgcag gcacgtaact 101 aaattaaATT GCgaattagt ataagaaact ggtaaagggt aaatatgtaa 151 ttaaacacca aaaccattga gaaaagaaaa aatgaatcaa agccagaagt 201 AGAAGAAGAA GAACCCTTTC GTCGTCAAGG TCTAGCTTTC TCAAATCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.007 -strand -112 : -118 TGCAAAG AC RSP00442 Mean Expected Number 0.005 +strand -121 : -112 gAACTTTGCA Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: hesB-like domain-containing protein |LOCUS: AT2G16710 |PROD: the same as GENE |7255255..7257367 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.38 C - 0.12 1 aatttatttg tctgtttttt gtttgctccg taacttatac ggcaaattcg 51 aaaatagttt aaatattcaa cactgatagt actaaaaaaa taatattttg 101 gtatataaac gagacgagtC CAATttagtt ttagtatatt tatatatcta 151 aatataattt gaagatattt gtatttcttt aagcaaaaga aaacagactt 201 GTTCATTTTC CAACTTCGGT TTAGAAAAAA AAAAGGAGAC GTCGTCGTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00071 Mean Expected Number 0.009 +strand +38 : +43 GACGTC AC RSP00071 Mean Expected Number 0.009 -strand +43 : +38 GACGTC Totally 2 motifs of 1 different REs have been found Description of REs found 70. Group RE: C-box /Group TF: RITA-1 /AC: RSP00071//OS: Oryza sativa /GENE: rifa-7-P-glucuronidase transgene/RE: C-box /TF: RITA-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ubiquitin-conjugating enzyme, putative |LOCUS: AT2G16740 |PROD: the same as GENE |7274804..7276024 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.28 C - 0.21 1 cccattatag accgttcaat agatatggta tattacagta agcatgtacg 51 taagaccatc cacttcaagg cacgtctctc tttcagaatc agaacaaaag 101 aatggatctt tctccattac ctttatgggc aaagcgggcg gctaaaaaga 151 gactttacaa tggtaaatct ttacttaaac aatgataaat gcaatagtgc 201 AAGCATTCCT GTTTGCAAGA GAATCACAAA TCTTTGCTTA CGGTTCACGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00019 Mean Expected Number 0.001 +strand -178 : -167 AtATGGTATATT AC RSP00030 Mean Expected Number 0.003 -strand -58 : -64 AGCCGCC AC RSP00080 Mean Expected Number 0.003 +strand -84 : -69 TTACCTTTATgGGCAA AC RSP00080 Mean Expected Number 0.003 -strand -69 : -84 TTGCCcATAAAGGTAA AC RSP00438 Mean Expected Number 0.010 +strand -64 : -59 GGCGGC AC RSP00495 Mean Expected Number 0.009 -strand -42 : -49 TGTAAAGT AC RSP00642 Mean Expected Number 0.009 +strand -15 : -8 TAAATGCA AC RSP00654 Mean Expected Number 0.006 +strand -144 : -135 CAtCCACTTC AC RSP00807 Mean Expected Number 0.010 -strand -59 : -64 GCCGCC AC RSP01214 Mean Expected Number 0.002 +strand -81 : -72 CCTTTATGGG Totally 10 motifs of 9 different REs have been found Description of REs found 18. Group TF: GT-1 /AC: RSP00019//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box5 /TF: GT-1 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G16760 |PROD: the same as GENE |7282783..7284314 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.34 C - 0.25 1 acaaacaaaa acgtttgaat tggaatttaa agctcccact actatatgtt 51 aaagtggttt aaagtacact tcctgggccc aataatacat ttaacgggcc 101 accaaatact agttttcact acgtgcgcat caccaaatct ttaacgttcg 151 ctcaccaact tttttcccca taagttttgg tcttcgtcgt acccaattta 201 TTTCTCTCTA CCCGTTTTTT CTCTTATTTC AAAAAAAAAT GTCTCCCTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.003 -strand +20 : +9 AAAAAACGGgTA AC RSP00870 Mean Expected Number 0.004 +strand -154 : -145 TGTtAAAGTG AC RSP00874 Mean Expected Number 0.005 +strand -154 : -144 TGTTAAAGTGG AC RSP01476 Mean Expected Number 0.009 +strand -143 : -136 TTTAAAGT AC RSP01642 Mean Expected Number 0.007 +strand +37 : +46 AAATGTCTCC Totally 5 motifs of 5 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: shikimate kinase family protein |LOCUS: AT2G16790 |PROD: the same as GENE |complement(7291039..7292319) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +336 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.37 C - 0.18 1 ttacattcaa aaaaaaaaaa aaaattgtca ataattgtgt atttttataa 51 tcattttcca tctttggtcc tacctctctt gcaaagtcac gtctcaccac 101 ctaatcagtt tattattatt ttattagatt tttatcaatt ctaatCCAAT 151 tcacctaatc tagcgaattt tgtgaatttc gtctttgatc aagaaaacgt 201 ATCCAATTGC TTCACCATTG GTGGTGTTGT GGAGAGTCAA GAAACACAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.008 +strand -121 : -115 TGCAAAG AC RSP00442 Mean Expected Number 0.008 -strand -112 : -121 TgACTTTGCA AC RSP00613 Mean Expected Number 0.008 +strand -13 : -6 ATCAAGAA AC RSP00711 Mean Expected Number 0.000 +strand -109 : -98 TCTCACCAcCTA AC RSP00847 Mean Expected Number 0.004 +strand -104 : -95 CCACCTaATC AC RSP00888 Mean Expected Number 0.008 -strand -68 : -76 AAAAATCTA AC RSP01060 Mean Expected Number 0.007 +strand -172 : -164 CAATAATTG AC RSP01060 Mean Expected Number 0.007 -strand -164 : -172 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -172 : -164 CAATAATTG Totally 9 motifs of 8 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 677. Group RE: Box 1 homolog /AC: RSP00711//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: high-affinity nickel-transport family protein |LOCUS: AT2G16800 |PROD: the same as GENE |7292820..7294447 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.09 T - 0.35 C - 0.16 1 taaaaaagta aaaactatac aacaaaaata ttcttcacca aaactgaaca 51 tgaataatag tattatattt taatactttt ttttatataa gatcaacatt 101 tactttagtt aatttccatt cctataatta actaatattt tattgATTGA 151 taaggaagca acaaaatata tttttagaaa aaaaaagttt tatcctcacc 201 GATTGAGAGC AAAGTCTCAC TCTCTTCCTT AAGCTCTGAG AAACCTCCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -198 : -187 AAAAAGTAAAAA AC RSP00996 Mean Expected Number 0.006 -strand -104 : -113 GTTGATCTTA AC RSP01104 Mean Expected Number 0.003 +strand +41 : +48 AAACCTCC AC RSP01602 Mean Expected Number 0.001 -strand +8 : +1 TCTCAATC AC RSP01678 Mean Expected Number 0.000 -strand -56 : -67 CAATAAAATATT Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT2G16940 |PROD: the same as GENE |complement(7349723..7354490) |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +356 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.27 C - 0.15 1 attaaatttg attttgacat ctccagattg aacgatgaaa actttgatta 51 tatagtaaaa caataggaag tagagaaaat attatatagt aaaacacagt 101 aacatattat aatataaaaa ataaaataaa aacttggATT GGgcctttgg 151 acccgaaaga gggttttagg ctgaatctgg gcaagtgggt aagtaaacct 201 ACAGAGAGTT AGCGACCACC TCACAAGCTT CTTCGTCTCC TTCACAGAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.010 -strand -13 : -19 CCACTTG AC RSP00669 Mean Expected Number 0.001 +strand -94 : -81 TtATAATATAAAAA AC RSP00868 Mean Expected Number 0.007 +strand -96 : -85 TATTATAaTATA AC RSP01091 Mean Expected Number 0.004 -strand -148 : -158 ATAtAATCAAA Totally 4 motifs of 4 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: F-box family protein (FBL10) |LOCUS: AT2G17020 |PROD: the same as GENE |complement(7403419..7405920) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.25 C - 0.24 1 cccgacccga cccgaatcta ataccgagcc gagccataat tttatcaaac 51 cgaatcaaat ttaactataa ccgaaccaaa tctaactgaa caaaccgaaa 101 taaaccgtta ccgttttgtc tgataTCAAT attttaatgt ccatgaaaaa 151 tggatctaaa aattcggact ttttaaagat gagattcgga cacaacccga 201 GATCGCCACA ATTTCCGCAA TTTACTTGAT CAGGAAAGAG AGACTCCGTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01210 Mean Expected Number 0.005 +strand -32 : -23 CTTTTTAAAG AC RSP01678 Mean Expected Number 0.001 -strand -62 : -73 CAtTAAAATATT Totally 2 motifs of 2 different REs have been found Description of REs found 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protein kinase, putative |LOCUS: AT2G17220 |PROD: the same as GENE |complement(7494736..7497258) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +399 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.40 C - 0.20 1 aatccaaccg tatagagact tgttgaaaag taaaataaag ttttcaaatg 51 aagaaaatac agaggataat tgtaggggcc ttgattgttt tctctttatt 101 tggtggtctc atgtaaatta tttttcttta tagttgactt tgacctttaa 151 aacctctata attctctctt tccttattct tcctcaaatc tttgcaccac 201 CATTCTTTTA TGACTCAGTC TTCTCTCTCT CTTCTCTCAA TGCCCATGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.004 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +30 : +22 AGAGAGAGA AC RSP01013 Mean Expected Number 0.002 +strand -156 : -147 CAAATGaAGA AC RSP01014 Mean Expected Number 0.003 +strand -156 : -147 CAAATGAAGA AC RSP01019 Mean Expected Number 0.009 +strand -153 : -147 ATGAAGA Totally 5 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G17240 |PROD: the same as GENE |7505214..7506288 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.21 T - 0.24 C - 0.19 1 aaacgtaagt cagaagaaga ttttcaaaac aataatggtg aaggaaagtg 51 attagaaaga atgaacaagg tggttagtca taggccctag ctattgtccg 101 caaagcttag tatttatggg ccacCCAATa aaagccttta aaagcccact 151 atcaaaacgc aaacgcagca gcataaaact ttcttagaac ctgtcacgat 201 AATTCTTGGT TGGTGGATAA TAGATTTAGC TCCGTCCCGG AGAACCATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.003 -strand -56 : -65 GCTTTTAAAG AC RSP00304 Mean Expected Number 0.006 -strand -5 : -12 TGACAGGT AC RSP00734 Mean Expected Number 0.006 +strand -48 : -41 CAAAACGC AC RSP00739 Mean Expected Number 0.001 -strand +19 : +8 TATCcACCAACC AC RSP00871 Mean Expected Number 0.005 +strand -129 : -120 GGTtAGTCAT AC RSP01109 Mean Expected Number 0.007 +strand -2 : +6 ATAATTCT AC RSP01221 Mean Expected Number 0.002 -strand -125 : -132 TAACCACC AC RSP01454 Mean Expected Number 0.007 -strand +14 : +8 ACCAACC Totally 8 motifs of 8 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 701. Group RE: Box 1 homolog (2) /AC: RSP00739//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog (2) /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 40S ribosomal protein S4 (RPS4A) |LOCUS: AT2G17360 |PROD: the same as GENE |7553567..7555395 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.21 T - 0.34 C - 0.19 1 ttccgatctt ttctcgttga agcttgcgtg agaactgagg aagaaaggga 51 cagagacatt cacgaccttt tgtttttttt tccgctttct aatcttcttc 101 agagtgggaa aaataaataa aagcgggctc ttattgggcc tatATTGGgc 151 ctgtacttaa cataagtcac acgtgtggca gcggattttt ggattacaca 201 TGTTAAAAAC TTAAAATTAG GGCTTTGTGT TTCGCTTCTT CTCAAACCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.009 +strand -32 : -26 ACACGTG AC RSP01256 Mean Expected Number 0.003 +strand -32 : -25 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -25 : -32 ACACGTGT AC RSP01469 Mean Expected Number 0.007 -strand +5 : -5 TaACATGTGT AC RSP01727 Mean Expected Number 0.000 +strand -34 : -23 TCACACGTGTGg AC RSP01727 Mean Expected Number 0.000 -strand -23 : -34 cCACACGTGTGA Totally 6 motifs of 4 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1535. Group TF: STF1/HY5 /AC: RSP01727//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (2) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AP19 |LOCUS: AT2G17380 |PROD: clathrin assembly protein AP19 |7560084..7562127 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.24 C - 0.22 1 tttttaatct gtaaaaatgc aatccgatta agtcggaccg tcagatcagt 51 cctcatcttg tttgtttaac ggtccagatt taaaacacta ccccagtaaa 101 tacaaaacca actgaagaaa aataaataaa aagtaaattt ttaaagagtc 151 cgacccgggt ccctcaaaaa aaaaaaactc cgacccggga caagatccgt 201 ATCCAACAAA CTTATATGTG TATCGGACAC AGAAGAATAC TTTCCACGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.005 -strand -135 : -141 AACAAAC AC RSP00097 Mean Expected Number 0.002 +strand -132 : -125 ACGGTCCA AC RSP00716 Mean Expected Number 0.009 +strand -98 : -90 CAAAACCAA AC RSP00742 Mean Expected Number 0.000 -strand -126 : -137 GgACCGTTAAAC AC RSP00870 Mean Expected Number 0.008 +strand -191 : -182 TGTAAAAaTG AC RSP01458 Mean Expected Number 0.001 -strand -55 : -67 cTTTAAAAATTTA AC RSP01767 Mean Expected Number 0.005 -strand -58 : -66 TAAAAATTT Totally 7 motifs of 7 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 704. Group TF: GT-1 /AC: RSP00742//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 2r /TF: GT-1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: HMGB4 |LOCUS: AT2G17560 |PROD: |complement(7649247..7650749) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +199 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.30 C - 0.24 1 aattaagggc gagatctgca agctcaggta cacgtgtcaa atggacggtc 51 aggatttgaa gagcacaatc cattattccg tccgttgctc ttctttccca 101 tacgtgtcaa attatttcgc tccttcacga aaaaatcccg ccacagtgca 151 aaatttcaag tcgcctttat tttaaaaata gatattattt tattattata 201 ATATCGCATC TAAAGCCCCC CCAAAAAAAA AATCCTATTA CTCACTCATA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.005 -strand -5 : -13 ATAATAAAA AC RSP00070 Mean Expected Number 0.002 +strand -100 : -93 TACGTGTC AC RSP00284 Mean Expected Number 0.007 -strand -153 : -158 CCGTCC AC RSP00340 Mean Expected Number 0.005 +strand -172 : -163 TaCACGTGTC AC RSP00524 Mean Expected Number 0.008 +strand -171 : -165 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -164 : -170 ACACGTG AC RSP01035 Mean Expected Number 0.008 +strand -169 : -163 ACGTGTC AC RSP01035 Mean Expected Number 0.008 +strand -99 : -93 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -171 : -164 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -164 : -171 ACACGTGT AC RSP01288 Mean Expected Number 0.003 +strand -101 : -94 ATACGTGT AC RSP01717 Mean Expected Number 0.000 +strand -173 : -162 GTACACGTGTcA Totally 12 motifs of 9 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT2G17670 |PROD: the same as GENE |7681433..7683239 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.24 C - 0.30 1 caacagacta ccatgcgccg tcctctgtcc attttcaaca caacagacaa 51 aatgcatctt cacccacact ttgggccgat attaacaagc ccaataggcC 101 CAATgtcttg ccacggtttc tctcatttgc taacgtaagc aactagagta 151 cacgagtgta actactatac gccgtcctct gtccattttc aacacaacag 201 AGTCACAAAA ACCTCTGCAA GAACCCTAAA GCTAAAACCT TTTTGCGATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.008 +strand -6 : +4 cAACAGAGTC AC RSP00297 Mean Expected Number 0.000 +strand -104 : +28 GGCCCA-- ** bp --ACCCTAA AC RSP01304 Mean Expected Number 0.007 +strand +20 : +29 aGAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G17710 |PROD: the same as GENE |7700678..7701828 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +260 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.38 C - 0.12 1 agaacaaaaa ccaatagtgt tagtttaatg gaggacgtca tttgaaaatg 51 acgttttggt gatattgatt gtgatggcca tttatgattc aacggctgtg 101 ATTGAatgat gtaacattag ttgcttcaag accatatatt ttatattatc 151 catacactac ctaattgctt aaaatattgt tgatgttgat gaagattgga 201 AGTTACATCT ACTTGTCTAC TTGTCGTTTC TTGTATAGTT GGAGTTTATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.004 -strand +25 : +16 GACAaGTAGA AC RSP00068 Mean Expected Number 0.004 -strand +17 : +8 GACAaGTAGA AC RSP01654 Mean Expected Number 0.007 +strand -154 : -145 AATGACGTTT AC RSP01654 Mean Expected Number 0.003 -strand -159 : -168 AATGACGTCC Totally 4 motifs of 2 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: oxidoreductase |LOCUS: AT2G17720 |PROD: the same as GENE |7704418..7706636 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.13 T - 0.22 C - 0.18 1 tcacttgatc gataaaatta catcatacag tacatctttt ctaaattaaa 51 acaaatctaa aacatggtta acaaaacaaa cgggttaaat gtgaataaac 101 aaaaagtatc gggtgcaaaa cataaaaaga caaaaataaa agactgagtc 151 caaaattcca aaaagtcaaa gccaccttcc taacttgtct gcatagacga 201 AGAAGACAAA GAAGAAGAGA TTCGATCACA CAAGAAAAAT TACAATTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01692 Mean Expected Number 0.002 +strand +21 : +28 TTCGATCA Totally 1 motifs of 1 different REs have been found Description of REs found 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: DNAJ heat shock protein, putative |LOCUS: AT2G17880 |PROD: the same as GENE |complement(7774047..7775013) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +273 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.34 C - 0.17 1 cttagggata acatttaatc gaatgtttta agtttcatga gtaccaaaac 51 aagaaaacaa ataataacaa tgtgaataat aatgttatca agttttgtta 101 tatgatacca aaaatagaaa aatttggtag atgACAATaa taacttcatt 151 gccactctca agttcgttcg ttcgttgaat cttatctcac ttctcccatt 201 ATTTACAACT GTGGATAAGC CTTTTAGTCT GACTCAGCTT TCTCAAGATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.002 -strand +20 : +11 GCTTATCCAC AC RSP00085 Mean Expected Number 0.007 +strand -96 : -81 aTACCAAAAATAGAAA AC RSP00085 Mean Expected Number 0.007 -strand -81 : -96 TTTCTATTTTTGGTAt AC RSP00093 Mean Expected Number 0.009 -strand +17 : +11 TATCCAC AC RSP00593 Mean Expected Number 0.003 +strand -24 : -16 GAATCTTAT AC RSP01032 Mean Expected Number 0.009 +strand -157 : -148 CCAAAACAAG AC RSP01209 Mean Expected Number 0.008 -strand -84 : -93 CTATTTTTGG AC RSP01209 Mean Expected Number 0.008 -strand -148 : -157 CTTGTTTTGG Totally 8 motifs of 6 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G17940 |PROD: the same as GENE |7809907..7811029 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.31 C - 0.14 1 caagaggcct gtgtgcattt tattttattt taggagaggt gttgttatca 51 agatggtcac atttagctaa cgaatattaa ttagacagga gcaaaagcca 101 tcattataat ttttattaac caaattcaag tgtagtgaac gccaagaatc 151 taacaccctc caaattactg tataagacac aaaaagtaac actaattctt 201 GTGTGATGTA ATATTGATGG AAGGTATACG CATAATTAAT TAAGCAGATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00206 Mean Expected Number 0.001 +strand +3 : +14 GTGAtGTAATAT AC RSP00595 Mean Expected Number 0.003 -strand +45 : +37 GCTTAATTA AC RSP00887 Mean Expected Number 0.004 +strand -57 : -49 AAGAATCTA AC RSP01056 Mean Expected Number 0.006 -strand -8 : -18 AgTGTTACTTT Totally 4 motifs of 4 different REs have been found Description of REs found 199. Group TF: GT-1 /AC: RSP00206//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II* /TF: GT-1 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G17972 |PROD: the same as GENE |7828667..7829403 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.19 1 cggtacactt gtaaattcta gtattaacca aacaagggta atatcggtat 51 ttaagcagcc aattaaagct cttgggccgt ttaaaattct taaaagccca 101 ttaatttcga aacgccacct gtcgagacat aATTGGgtca gaggatttta 151 acggtggaag atgaagaagc ttatcttttt gcaaaatcgt ttcttccttc 201 ATTCATCATA GCTTCAAAAT CTTAAAAACA ACAACAAAAA TGAAAAGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 +strand -87 : -78 GCCACcTGTC AC RSP01033 Mean Expected Number 0.007 -strand -164 : -173 CCTTGTTTGG AC RSP01166 Mean Expected Number 0.000 +strand -28 : -13 ATCTTTTTGCAAAaTC Totally 3 motifs of 3 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1078. Group RE: CCAAT box /Group TF: HMG proteins /AC: RSP01166//OS: Zea mays /GENE: pMS1/RE: CCAAT box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PIN1AT |LOCUS: AT2G18040 |PROD: |7849260..7850952 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.27 C - 0.19 1 aaaaatcaaa agttccaggg ttatttcata aataccgaaa gatccgaggc 51 ggtttcatca tatactgggc gatccgtggt ggtttcgaat ataccgaaag 101 atccgggagc attttgaatc tgctgaaaga tctggggcga tttcgtagat 151 accaaaatat ctgtggtgat ttcgtctcac agtttcaatc gtcgataatc 201 ATTAGGGTAA AGCAAAAATA GTGAAGCAGA GCCGCAAAAA CACTTTTCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.006 -strand -14 : -24 TGAAAcTGTGA AC RSP00212 Mean Expected Number 0.006 -strand +4 : -5 TAATGATTA AC RSP00701 Mean Expected Number 0.002 -strand -94 : -101 CCCGGATC AC RSP00836 Mean Expected Number 0.002 -strand -123 : -130 CACGGATC AC RSP00842 Mean Expected Number 0.003 -strand -153 : -160 CTCGGATC AC RSP00941 Mean Expected Number 0.005 +strand -18 : -11 TTTCAATC AC RSP01507 Mean Expected Number 0.002 +strand -130 : -123 GATCCGTG AC RSP01594 Mean Expected Number 0.005 -strand -11 : -18 GATTGAAA Totally 8 motifs of 8 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 667. Group RE: Oct (d) /AC: RSP00701//OS: Triticum aestivum /GENE: H3/RE: Oct (d) /TF: unknown 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: elongation factor 1-beta, putative / EF-1-beta |LOCUS: AT2G18110 |PROD: the same as GENE |7879333..7880990 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +385 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.31 C - 0.23 1 taggtaaaat aggttcttaa tatgtaacat gtacattttt gcatatttct 51 aattcggtgt catccataca aaaaacaaat ggcaaaaatc agaatggata 101 gagaattaat ccgctaaaat gtaaatgtta ggcccaaatt cggcccatta 151 cacaaaaatc tcagagggtt aaatacatca ccttctcgac gctaattcct 201 CCACTACGTC TCTCTCTCTT GCTCTCCCTC TTCAAGTCGG CTCCTTTATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00454 Mean Expected Number 0.003 +strand -180 : -170 TAtGTAACATG AC RSP00864 Mean Expected Number 0.002 -strand +19 : +11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +17 : +9 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G18230 |PROD: the same as GENE |complement(7939009..7941411) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +769 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.25 C - 0.23 1 aaaaggtaca ctaactattt ttttaagaaa gatattaaaa tcttgaaaaa 51 ccatggccgt cagatccatt aacctttcaa attcaacgga cacgattcat 101 cgtacgATTG Acgatgaaca ataaccgagg aaaaagtgac gtcagcgtct 151 tcttcctcct ccaacgtccc ataaagaagc gccacacaca cagtcacacg 201 AAAACTCTAC TGTAACTGCA AAATCTTGTT GTTTTCTTAA ACGAAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00892 Mean Expected Number 0.004 -strand -163 : -171 TTAATATCT AC RSP01497 Mean Expected Number 0.002 +strand -145 : -136 GCCGTCaGAT AC RSP01654 Mean Expected Number 0.004 +strand -66 : -57 AGTGACGTCA Totally 3 motifs of 3 different REs have been found Description of REs found 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: anaphase-promoting complex |LOCUS: AT2G18290 |PROD: the same as GENE |complement(7955417..7957235) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.31 C - 0.18 1 attgaatcgt taatgacttg tgtaggtgaa actattctaa ttccaagtgt 51 ttgtcacttt tattcagaaa gtaaagtaat tgccgtttct gttttaacaa 101 aacaagtatc aggccgttcc aagcgttcac taacgacacg acgtttgttt 151 atgaaccaaa aagacgaatt tttcaaaacc tcgtcggaga ggtttaggct 201 TAAAGAAACA AATTGTTGGA ATCTCAATTC TCGAATCTGA CATCTCGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01017 Mean Expected Number 0.009 +strand +4 : +11 AGAAACAA Totally 1 motifs of 1 different REs have been found Description of REs found 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G18350 |PROD: the same as GENE |complement(7978099..7979163) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +171 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.42 C - 0.14 1 ttttctcttt ctccattagt aacgacctaa actttatttt cttttcttga 51 tctcttctta aatggggtta gataagtttt cccctttaat ttagttgctt 101 gtagacttga gattagtcta gtaggttttg gtgggctatc actaatacaa 151 aagtcaaagt caaaattttt aaaaaggttt caactttgga agagatattt 201 ATCATCTTCA TTTTCTCTAT AGGTTTATGA GAAGCTAAAG CTATGATGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 -strand -189 : -197 AGAAAGAGA AC RSP01013 Mean Expected Number 0.009 -strand -182 : -191 CtAATGGAGA AC RSP01167 Mean Expected Number 0.007 -strand +1 : -8 TAAATATCT Totally 3 motifs of 3 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ribosomal protein L6 family protein |LOCUS: AT2G18400 |PROD: the same as GENE |complement(7996561..7997668) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +613 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.25 C - 0.18 1 tgaaaatcga ttccgccatt gttgagagat tctagagctc tccggtcaaa 51 agagcggcga ggaaacaaaa catcgaaaag ttaaaaaggg cttttgggct 101 ttatgatgta gcccactggg ctttgttcaa agaaacactc gttggaggaa 151 taaacatcgt gccgtttttt taacatggat aaaacgtcaa ccactttgta 201 TGCTTCTCAA AGAAACGAAA TTAAGAGAAG GAGAAGGTTT TACGCCGGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00918 Mean Expected Number 0.004 -strand -10 : -19 GTTGACGTTT Totally 1 motifs of 1 different REs have been found Description of REs found 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: small nuclear ribonucleoprotein E |LOCUS: AT2G18740 |PROD: the same as GENE |8130303..8132086 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.19 T - 0.28 C - 0.12 1 gagcctttta tgttgtaaca ctgagcctca gtatattaaa aataaatctt 51 tctctgaaaa aaaaaaaaaa aaagttaaaa acctacgcta aaaaattcta 101 ggtcttggaa aagagtattt gggccaaatg atcacattaa ttagttatgg 151 gctgaaataa cattctgaag ttttatgagg accgagagaa ctaagtttaa 201 GAAAAATGTT GAAAAAAGCG TATTAGCAGA GGGACAAACG CTTTTTAGGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 +strand -66 : -57 CATTAATTAG AC RSP00421 Mean Expected Number 0.009 +strand -20 : -14 ACCGAGA AC RSP00559 Mean Expected Number 0.006 -strand -39 : -49 TGTtATTTCAG Totally 3 motifs of 3 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G18770 |PROD: the same as GENE |8141726..8143642 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +340 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.30 C - 0.24 1 tacaagtaat caatcgaatt actgtaaatc tgaaccaatc gatttcggtt 51 caagttggta ggtataaatt accaatttag aaccgtactc aattcaatgc 101 gttgttgact catcataact tattaacttg tgcatatctg acgaaaatac 151 ccttgtctaa ttccaaaata tacaagaaac ccttatcagt cccaattctc 201 ACAAATAACA ACAACAATTT CGCCGGCGTC GTCGTCGTCG TCTCTCCATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.003 -strand -137 : -146 TACCTACCAA AC RSP00651 Mean Expected Number 0.000 -strand -138 : -148 ACCTACCAACt AC RSP00749 Mean Expected Number 0.005 -strand -32 : -43 ATTTTGgAATTA AC RSP01453 Mean Expected Number 0.002 -strand -138 : -144 ACCTACC Totally 4 motifs of 4 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: integral membrane Yip1 family protein |LOCUS: AT2G18840 |PROD: the same as GENE |8165280..8167166 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.30 C - 0.23 1 aataaacgtt tgaacgtctt tttgcatcag aacgtgaaat taatgtcaaa 51 cgcaaacgca tgtacaaatc ctgaacaaac ataccgctta ggtgatggat 101 ggttgcgtaa gaacaaaaca ccttaaacgg cagcgttttg taggagcacc 151 gcttcgcacg tttcttccat atctctgatc acgtgatagt cgtcttcttc 201 AGATCTTTTA TCACTTTCTT CTTCCCGGAG AAAATTTGGC CCTAAATCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.004 +strand -46 : -37 CGCACGTtTC AC RSP00734 Mean Expected Number 0.003 -strand -61 : -68 CAAAACGC AC RSP00752 Mean Expected Number 0.000 +strand -23 : -14 ATCACGTGAT AC RSP00752 Mean Expected Number 0.000 -strand -14 : -23 ATCACGTGAT AC RSP00978 Mean Expected Number 0.003 +strand -23 : -14 ATCACGTGaT AC RSP00978 Mean Expected Number 0.003 -strand -14 : -23 ATCACGTGaT Totally 6 motifs of 4 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 714. Group TF: G-box binding TF /AC: RSP00752//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 4 /TF: G-box binding TF 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT2G18910 |PROD: the same as GENE |complement(8199790..8201420) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +207 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.18 T - 0.27 C - 0.11 1 attgaaatca aaattattgt gtttagggtt tagatctttt ctccacggat 51 catataataa ttgttttttt ttttgaagaa ttattaagaa aaaaaaggac 101 caaaaaaaag aaaagaaaga ttcgtcggaa aaagcaggaa aaaaaaaaga 151 atgcaagaaa tgtgaagtgt gtttgactct ttcattggtc agtgtgaaaa 201 GTAAAGTACA TTTACACTTG CAAGAAAAAA AACACAGAGA CGAACCAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -178 : -170 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -170 : -178 AAACCCTAA AC RSP00836 Mean Expected Number 0.001 +strand -157 : -150 CACGGATC AC RSP00953 Mean Expected Number 0.009 -strand -138 : -146 CAATTATTA AC RSP01015 Mean Expected Number 0.002 -strand -13 : -22 CcAATGAAAG AC RSP01303 Mean Expected Number 0.003 -strand -169 : -178 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -169 : -178 TAAACCCTAA AC RSP01507 Mean Expected Number 0.001 -strand -150 : -157 GATCCGTG Totally 8 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G19310 |PROD: the same as GENE |complement(8376876..8377488) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.28 C - 0.20 1 catcaatcta ctacacactt tgaacattgt cggattccgg gaataagaag 51 aaaaaaaaga aaaaggcctt ttctattggg ctttatgctt ccacgctagg 101 cccagttact gtgcttcata atcatcacaa acgtcactct caagaaaact 151 ctagaattct cttgagtaag aagatcaaga tttataactc agcttctgtt 201 ACTTTCTAAG AATAGAGAAG AAGAAGATGT CGATGATTCC GATCAGCAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.005 -strand +1 : -7 TAACAGAA AC RSP01127 Mean Expected Number 0.008 -strand -90 : -107 CAGT-- ** bp --AGCG AC RSP01654 Mean Expected Number 0.008 -strand -63 : -72 AGTGACGTTT Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G19385 |PROD: the same as GENE |8394117..8395794 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.33 C - 0.24 1 gtttactcga tttggttcgg tttataccaa aattaaatgc cttgaattcc 51 cctggatgca ttgctaattg caataccagc tctacaaaca tcatgccgtc 101 tcatttctaa aaactaagaa accttgtcgt ttttagcgtt ccaaaacagc 151 gcgttgtctg atacttgaat aaacaaactc tacattgaat tagttcttct 201 GGAAGGCTTT TAAAACCCTA GCTGGTACCA ATCTTAAACC CCTCTCCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.002 +strand -30 : -19 aAACAAACTCTA AC RSP00894 Mean Expected Number 0.008 -strand -153 : -160 AATTCAAG Totally 2 motifs of 2 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: casein kinase, putative |LOCUS: AT2G19470 |PROD: the same as GENE |complement(8440697..8443625) |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +248 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.33 C - 0.13 1 tggttatttg tttaaatgtt aaaagatata tgaatttgta aacttaagag 51 atttatggaa tttaggaaaa tataaaaaca aaatccttat tcttattata 101 aagtttctaa gaaatatact gtatattttt ttcaccgaat aaagatattt 151 aataaattga gaaaaggaat agaaaagacc aaaagcaaca ggctaagcga 201 GACACACACA CACGCGCAGT CTTCTTCATC TTGCTTGCTT CTGGTTGCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.002 +strand +10 : +16 ACACGCG AC RSP01030 Mean Expected Number 0.009 -strand -93 : -100 AGAAACTT AC RSP01128 Mean Expected Number 0.006 +strand +17 : +34 CAGT-- ** bp --TGCT AC RSP01233 Mean Expected Number 0.007 -strand +35 : +29 AGCAAGA AC RSP01559 Mean Expected Number 0.005 +strand +12 : +17 ACGCGC Totally 5 motifs of 5 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CDA1 |LOCUS: AT2G19570 |PROD: cytidine deaminase (CDD) / cytidine aminohydrolase |complement(8477460..8478726) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.38 C - 0.18 1 gttttcttaa ttagaccacg attttaacat tacgttacac taatactcta 51 ttgcattttt ggtagttttc ataacaatga ttccatgcgg cttagtcaaa 101 ccgaaatcat attatttgta aatTCAATtc tgatataatt tttctatttt 151 gtaccaaacg taaaccgaaa cataaccgaa accgaaccaa aacttcattt 201 GCGTAATGTA GTTTCCTACG TTGTTGTATC TATAAATAGT TTGTTTGTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.005 +strand -122 : -114 GATTCCATG AC RSP01071 Mean Expected Number 0.007 +strand -46 : -37 CAAACGTAaA AC RSP01086 Mean Expected Number 0.005 -strand -37 : -46 TTTACGTTTg AC RSP01296 Mean Expected Number 0.008 +strand +30 : +38 CTATAAATA Totally 4 motifs of 4 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G19790 |PROD: the same as GENE |8534313..8535605 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.17 T - 0.27 C - 0.13 1 tataagccca gtattaactg aaaataaaat tagttttttt catattacca 51 tgcatgtttt tttcggccca tataagccca atattaccgt gcaagttttt 101 tcttattttt taaattttat ctgaaagtaa aATTGAacag agtaccgatg 151 acgtgtccta actcccaagt agaagaagaa gaagaagtaa aaaaaaaaaa 201 AAAAAGATCT GAAAGAAATA AAAAACGAAT CGGAAGAGAG AGAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.002 +strand -152 : -145 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -145 : -152 CATGCATG AC RSP00460 Mean Expected Number 0.004 -strand -44 : -53 GACAcGTCAT AC RSP00864 Mean Expected Number 0.003 +strand +35 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +37 : +45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +39 : +47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +41 : +49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +43 : +51 AGAGAGAGA AC RSP00916 Mean Expected Number 0.003 +strand -54 : -45 GATGACGTGT AC RSP00997 Mean Expected Number 0.002 +strand -54 : -45 GATGACGTGT AC RSP01035 Mean Expected Number 0.004 +strand -50 : -44 ACGTGTC AC RSP01258 Mean Expected Number 0.001 +strand -52 : -45 TGACGTGT AC RSP01470 Mean Expected Number 0.005 +strand -153 : -144 cCATGCATGT AC RSP01654 Mean Expected Number 0.005 +strand -54 : -45 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 +strand -54 : -43 GATGACGTGTCC Totally 15 motifs of 10 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ribosomal protein L4 family protein |LOCUS: AT2G20060 |PROD: the same as GENE |8666124..8668562 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +341 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.26 C - 0.26 1 cctgactaaa cgaagataat gaaataagcc cacaaggccc aaataattaa 51 tatcttttat tctttttggc aaaatgaaaa atctgactta tgggcttttt 101 aacatttaca catttaactt catgacCCAA Tgaagacccg acccgtctgg 151 taatgacccg atccaacaca tgagtaaacc ttcactgaaa cctcgaaact 201 CCTCCAGAAG CCTAAAACCT TCACCACCAA ATCGGTGCCT CCTTGAATAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00709 Mean Expected Number 0.007 -strand -152 : -160 TAATTATTT AC RSP00892 Mean Expected Number 0.003 +strand -154 : -146 TTAATATCT AC RSP01014 Mean Expected Number 0.009 +strand -74 : -65 CcAATGAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: LCV1 |LOCUS: AT2G20130 |PROD: expressed protein, contains Pfam domain |complement(8697449..8699501) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.39 C - 0.17 1 acttagtggg ccttaggtat cgcaaatttt tttaaaactg attcaaccta 51 agctattatc tggtttagtt caataactcg gtttaattat ctttaatttc 101 ggtttaagtt ttgtaaaagT CAATtcgttg gtttggtagt tggtacggtc 151 aatcggtaca ggtaaggaac ttttcttttg ccatttgggg aaatcgaatc 201 AAAAATCAAT TTCATCGTCT TCTCTATCTG TCATTCATCA TCATCACAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.006 +strand -89 : -82 TGTAAAAG AC RSP00230 Mean Expected Number 0.005 +strand -156 : -147 AACCTAAgCT AC RSP00735 Mean Expected Number 0.006 +strand +1 : +8 AAAAATCA AC RSP01091 Mean Expected Number 0.004 +strand -8 : +3 ATcGAATCAAA Totally 4 motifs of 4 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 26S protease regulatory complex subunit 4 |LOCUS: AT2G20140 |PROD: the same as GENE |8699781..8702160 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.26 C - 0.20 1 gacttttaca aaacttaaac cgaaattaaa gataattaaa ccgagttatt 51 gaactaaacc agataatagc ttaggttgaa tcagttttaa aaaaatttgc 101 gatacctaag gcccactaag tttttcacat cgtaaaaagg cctaaaataa 151 taagcccact ttaatcatct cctcccgtta tcagattaaa agatttgttt 201 CTCCGAGAGC AAGAAACCTC AGAGAGACGA AGCACAATGG GTCAAGGACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.007 -strand -191 : -198 TGTAAAAG AC RSP00230 Mean Expected Number 0.004 -strand -124 : -133 AACCTAAgCT AC RSP01017 Mean Expected Number 0.002 -strand +2 : -6 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: photosystem I reaction center subunit IV |LOCUS: AT2G20260 |PROD: the same as GENE |8743818..8744843 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.30 C - 0.24 1 cggagaagat gagaaatgaa ttttggcggc aaaatcaatc aacccttatt 51 acagattctt tgctctaatt atatatttca ttttctaagg ttgccacgtc 101 atcacattat ccagacgata ctgatatgtg atcacacgtg tcatatcaca 151 agtggtttaa aacgattcct tttaacccca aacaatctaa agctttgtcc 201 ACCTTTTCGG ATCACTCACA CAACTTCCAA CGATCACACA CAAATGGCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 +strand -68 : -59 CaCACGTGTC AC RSP00113 Mean Expected Number 0.000 -strand -100 : -108 TGACGTGGC AC RSP00166 Mean Expected Number 0.001 -strand -168 : -175 TTTGCCGC AC RSP00214 Mean Expected Number 0.003 -strand -100 : -107 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -107 : -100 CCACGTCA AC RSP00248 Mean Expected Number 0.003 +strand -108 : -99 GCCACGTCAt AC RSP00438 Mean Expected Number 0.006 +strand -176 : -171 GGCGGC AC RSP00522 Mean Expected Number 0.005 -strand -46 : -52 CCACTTG AC RSP00524 Mean Expected Number 0.009 +strand -67 : -61 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -60 : -66 ACACGTG AC RSP00550 Mean Expected Number 0.007 -strand -88 : -98 TGGATaATGTG AC RSP00746 Mean Expected Number 0.002 -strand -20 : -31 tTGGGGTTAAAA AC RSP00807 Mean Expected Number 0.006 -strand -171 : -176 GCCGCC AC RSP00819 Mean Expected Number 0.003 +strand -108 : -99 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 +strand -108 : -99 GCCACGTCaT AC RSP00913 Mean Expected Number 0.005 -strand -98 : -107 GATGACGTGG AC RSP00915 Mean Expected Number 0.007 -strand -98 : -107 GATGACGTGG AC RSP00916 Mean Expected Number 0.005 -strand -98 : -107 GATGACGTGG AC RSP00943 Mean Expected Number 0.008 +strand -60 : -50 TCATaTCACAA AC RSP00997 Mean Expected Number 0.006 -strand -98 : -107 GATGACGTGG AC RSP01023 Mean Expected Number 0.003 +strand -73 : -66 GTGATCAC AC RSP01023 Mean Expected Number 0.003 -strand -66 : -73 GTGATCAC AC RSP01034 Mean Expected Number 0.006 -strand -102 : -108 ACGTGGC AC RSP01035 Mean Expected Number 0.008 +strand -65 : -59 ACGTGTC AC RSP01152 Mean Expected Number 0.002 +strand -68 : -59 CACACGTGtC AC RSP01256 Mean Expected Number 0.003 +strand -67 : -60 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -60 : -67 ACACGTGT AC RSP01275 Mean Expected Number 0.005 +strand -108 : -99 gCCACGTCAT AC RSP01280 Mean Expected Number 0.001 -strand -98 : -108 GaTGACGTGGC AC RSP01469 Mean Expected Number 0.008 +strand -69 : -60 TCACAcGTGT AC RSP01596 Mean Expected Number 0.008 -strand -50 : -60 TTGTGAtATGA AC RSP01658 Mean Expected Number 0.000 -strand -98 : -109 GATGACGTGgCA AC RSP01727 Mean Expected Number 0.000 +strand -69 : -58 TCACACGTGTcA AC RSP01727 Mean Expected Number 0.000 -strand -58 : -69 TgACACGTGTGA Totally 34 motifs of 30 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 948. Group RE: PI /AC: RSP01023//OS: Arabidopsis thaliana /GENE: GapB/RE: PI /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 1535. Group TF: STF1/HY5 /AC: RSP01727//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (2) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20390 |PROD: the same as GENE |complement(8803364..8805299) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.35 C - 0.14 1 tttaaggtac aaaatgtttt ataatgttta gtaaaattat attgaagatt 51 aaaatgctgt taaatgacac gttaaacatt aaaggttaaa aatgttattt 101 ttcgggtttt ttaaacatac tATTGTtttt cttttaatct atatttattt 151 caacgaaaaa agtaaaaata ataaaatcta aataagaagt tgcaaaaccc 201 AGAACCCTAC AGATCATCCC CTACCTCGCT GCTTCGGGTC GAATCAGCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -44 : -33 AAAAAGTAAAAA AC RSP00188 Mean Expected Number 0.002 -strand -126 : -135 TtAACGTGTC AC RSP00741 Mean Expected Number 0.005 +strand -121 : -110 tAAAGGTTAAAA AC RSP01035 Mean Expected Number 0.004 -strand -129 : -135 ACGTGTC Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: succinyl-CoA ligase (GDP-forming) beta-chain |LOCUS: AT2G20420 |PROD: the same as GENE |8812537..8815187 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.37 C - 0.09 1 agcattttta ttgaaaaatt gtattgctta gtttttttat tgttatattg 51 ttagtgaatt aaaatggtac tttggtattt tcatatatag actttttgaa 101 aataaaatct tagatttttt ctaacaagag ttaccaaaaa tattttggaa 151 ttaaatgagc cggcgacata gaagaataga gagggttaaa ttgaaaattc 201 ATAAAGTAGG AAAAAATTAG GGTTAGACTC GATCATTCAT AGCTGCGACT 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L14 (RPL14A) |LOCUS: AT2G20450 |PROD: the same as GENE |8820947..8822332 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.35 C - 0.24 1 agcagagtac tttccttttt aaccgaacca agccgatttt attagctccg 51 atttcaaaca ttaaaccgat cggtttcggt attcttaaac gacgtcatgt 101 aatctctcca catttaatgg gcctttaaaA TTGTtagtgg gcttctatat 151 gcttatgtgc ctaattcttt tatatcaaaa accctaataa tctcttgggc 201 ACATAAAAAT CTCTTCGCCG CACAATTGCT CCAATCTGTT TCTTCTAGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -14 : -22 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -22 : -14 AAACCCTAA AC RSP01303 Mean Expected Number 0.005 +strand -23 : -14 aAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: NOP10 |LOCUS: AT2G20490 |PROD: nucleolar RNA-binding Nop10p family protein |8838797..8839997 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.31 C - 0.23 1 gccggcgaat cgaaatatcg gaaatttcac ttttagggga tttagtggcg 51 attttcacac gtgacggaac cactcacgtg cattagttgg gctctgaata 101 tagtaggccc attgATTGGg gttacaattt tttatatcaa aaaagcccat 151 tttgttttct cttctagaac tttatataca cattgacgag ggtcgccgta 201 AAACCTCTGC TACTTCTGCT CCAGAAAAAC CCTAATCAGC TTCTCGTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +35 : +27 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +27 : +35 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -95 : +34 GGCCCA-- ** bp --ACCCTAA AC RSP01152 Mean Expected Number 0.003 +strand -145 : -136 CACACGTGaC AC RSP01218 Mean Expected Number 0.000 +strand -92 : -81 CCATTGATTGGG AC RSP01303 Mean Expected Number 0.003 +strand +26 : +35 aAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20515 |PROD: the same as GENE |complement(8845935..8846768) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.28 C - 0.18 1 ataaaaagaa tacgtattta gcagcagatt cagacaaact catgtgcgtt 51 tcaaaaatga cgtttatatc cccctaataa ttatattcac tctatccact 101 ttgacaaaaa gatcacgtta atttgaattc taagggtaaa agcgtcaaag 151 tatgtctctt tttccgaggt aatagcaata ggcaactaga ggagaccgat 201 AACTCAAGCA AACTCAGATT CTTGATAGCG ATTTAATGAA GACCCAAGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 -strand -37 : -46 gAAAAAGAGA AC RSP00613 Mean Expected Number 0.005 -strand +26 : +19 ATCAAGAA AC RSP01640 Mean Expected Number 0.003 +strand -51 : -42 gTATGTCTCT AC RSP01654 Mean Expected Number 0.005 +strand -145 : -136 AATGACGTTT AC RSP01702 Mean Expected Number 0.009 +strand -192 : -183 AAtACGTATT AC RSP01702 Mean Expected Number 0.007 -strand -183 : -192 AAtACGTATT Totally 6 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: DNAJ heat shock family protein |LOCUS: AT2G20560 |PROD: the same as GENE |complement(8855211..8857051) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.25 C - 0.22 1 gtagaataat aaaaagctca ctttgagtcc aatgttgtaa aatgggcttt 51 agcattttaa actccacagc ttaacgggct agagagttac ggtaacgaag 101 aaaagcctgt gatgcaaaca cgcgtcaccc aaACAATcag aggttttcag 151 agatttctcg aacgttccac agaattctcc acaactctga gaagaaacat 201 CATGAATCCG TCGTTTTTAA GACCAAAACT CATCTAATCT TCAACAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 -strand -75 : -84 GACGCGTGTt AC RSP00523 Mean Expected Number 0.010 +strand -83 : -77 ACACGCG AC RSP01165 Mean Expected Number 0.000 -strand -16 : -29 GtTGTGGAGAATTC Totally 3 motifs of 3 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1077. Group RE: HSE(2) /AC: RSP01165//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: HSE(2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20585 |PROD: the same as GENE |8872179..8873848 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.19 1 tgccaaaacc aatattgact cagtttaaaa aataacgatc cataaaattt 51 tccaattact ttgatcacat aaaaaaagtg aagaaatgtt agccacttgc 101 atagtgccgt tcaaagacgc acaaatgaaA TTGGgctttc ctttggccca 151 aaagtgttgc gatcgcgttt ataacaaaag actaaggttt cgtccaaact 201 AAGATCGCGT TTATAGGGTT TATCATCATT TCCCGTAATC GTAATCGGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -43 : -53 aACACTTTTGG AC RSP00522 Mean Expected Number 0.009 +strand -108 : -102 CCACTTG AC RSP00716 Mean Expected Number 0.003 +strand -197 : -189 CAAAACCAA Totally 3 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: lumazine-binding family protein |LOCUS: AT2G20690 |PROD: the same as GENE |8930386..8932052 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.37 C - 0.19 1 catataacca aactcaaaac ctttatataa gagatagtaa atttaacctt 51 cccattttgc ttttttctca aaaagcttga agctttgagt caaagtaacc 101 gattttcaaa tttttgtatt ttgatcctct aacttcgtat ttattCCAAT 151 tttgccccgt tcatttgttc acaacctaaa atctctaaag tttggttctt 201 GAGAAACTGT GAGGCCAAAA AGTTTGGTTC TTGAGAAATG ATGGCGGCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 -strand +49 : +43 AGCCGCC AC RSP00438 Mean Expected Number 0.004 +strand +43 : +48 GGCGGC AC RSP00807 Mean Expected Number 0.004 -strand +48 : +43 GCCGCC AC RSP00943 Mean Expected Number 0.004 -strand +41 : +31 TCATTTCtCAA AC RSP00985 Mean Expected Number 0.008 +strand -12 : -3 AGTTtGGTTC AC RSP00985 Mean Expected Number 0.008 +strand +21 : +30 AGTTtGGTTC AC RSP01011 Mean Expected Number 0.000 -strand +49 : +41 AGCCGCCAT AC RSP01596 Mean Expected Number 0.004 +strand +31 : +41 TTGaGAAATGA Totally 8 motifs of 7 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATEXPB1 |LOCUS: AT2G20750 |PROD: beta-expansin, putative (EXPB1) |8948202..8949768 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.13 T - 0.36 C - 0.27 1 tgctaaatca aggcccctaa ctgtcagtag gtcccatccc cccctcataa 51 aatggcacac tacgtaaata agaagaatgg ctctaggaca ttatcgtcat 101 tttcttatct gatgcaaaag acttgacttt tcctttttgc agacttaacc 151 attcctcctc cttccctctc tatttaacca acttaaccaa caattctttc 201 TCACTTCTCC ACTTTTTTTC TCGGTTAGTG TCAGTTTTTT TGTTGGCTAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00635 Mean Expected Number 0.002 +strand -171 : -164 GGTCCCAT AC RSP00961 Mean Expected Number 0.001 +strand -88 : -81 TGCAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20760 |PROD: the same as GENE |complement(8949844..8952304) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.32 C - 0.22 1 ttcacgaaat caggcatcac gttatcgaag aaccgacccg ccattgtcgt 51 ctctttccgt taaagctcaa aatcgatttt gtgttctaga agaaagacta 101 aacgacatca tttttagacg accggttcgg tgagttggtt acacgttttt 151 ggtcaacgtg gcatttttat aatgaaatca tcagatctac gcaaaacttt 201 GAAAGACGAC AGCGTTTAAT AATCTCCTTC TCTTGTCTTG CTTCCTTGTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.004 +strand -48 : -39 TCAACGTGgC AC RSP00357 Mean Expected Number 0.003 -strand -64 : -71 CAACTCAC AC RSP00508 Mean Expected Number 0.001 +strand -40 : -29 GCATTTTTATaA AC RSP00682 Mean Expected Number 0.002 -strand -39 : -48 GCCACGTtGA AC RSP01034 Mean Expected Number 0.007 +strand -45 : -39 ACGTGGC AC RSP01600 Mean Expected Number 0.007 -strand +4 : -4 TTTCAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: cell wall protein precursor, putative |LOCUS: AT2G20870 |PROD: the same as GENE |complement(8989071..8989793) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.28 C - 0.26 1 gacagaatta tatttaaaag gcaacaacaa aagtacgtat acgttgttac 51 caccaaactt tggaggctcg ctaataataa ccacactacc catttgttac 101 acacccttta ttttcaacca tatcatctca ccttcgttaa atgttcccac 151 aattagctca gtattttact atatacatac acacacattc cctccacagg 201 ATCAAACAAA CACACGAGCT TTCTCCTCTA CAACAAAATA AAATAAAATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00631 Mean Expected Number 0.003 -strand -116 : -128 TGTGGTTATTaTT AC RSP00913 Mean Expected Number 0.006 -strand -74 : -83 GATGATATGG AC RSP00914 Mean Expected Number 0.001 -strand -74 : -83 GATGATATGG AC RSP01080 Mean Expected Number 0.001 +strand -75 : -64 tCTCACCTTCGT AC RSP01109 Mean Expected Number 0.009 -strand -190 : -197 ATAATTCT Totally 5 motifs of 5 different REs have been found Description of REs found 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 998. Group TF: DcMYB1 /AC: RSP01080//OS: Daucus carota /GENE: DcPAL1/RE: box-L2 /TF: DcMYB1 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: THF1 |LOCUS: AT2G20890 |PROD: expressed protein |8994749..8996494 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.25 C - 0.22 1 aattgataat gaaacagaga gcaacattat gtacatgtga tatatgctgc 51 atttatttat gggcttttat tagatggacc gagctctagc aaaatccaaa 101 gtaaatgggc ctaatcctaa cgtggacaga caagggacac gtgtcacact 151 accgacatct cgtggagttg gataagccac tcgaaagtcg aaactcagaa 201 GATCCAACCA GAGCCATCAT CATCCTTCCA ATGGCTATTA CTTGAGAACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 +strand -65 : -56 GACaCGTGTC AC RSP00143 Mean Expected Number 0.004 -strand -56 : -65 GACaCGTGTC AC RSP00204 Mean Expected Number 0.003 +strand -65 : -56 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -56 : -65 GACACGTGtC AC RSP00524 Mean Expected Number 0.010 -strand -57 : -63 ACACGTG AC RSP00642 Mean Expected Number 0.004 -strand -146 : -153 TAAATGCA AC RSP01009 Mean Expected Number 0.001 +strand -51 : -43 TACCGACAT AC RSP01010 Mean Expected Number 0.002 +strand -51 : -43 TACCGACAT AC RSP01035 Mean Expected Number 0.010 +strand -62 : -56 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -64 : -57 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -57 : -64 ACACGTGT Totally 11 motifs of 8 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 934. Group TF: DREB1A; DREB2A /AC: RSP01009//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB1A/DREB2A BS /TF: DREB1A; DREB2A ||Identical REs AC: RSP01610 RSP01763 RSP01771 RSP01779 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20930 |PROD: the same as GENE |complement(9007700..9008818) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.31 C - 0.13 1 cttgagatga atttttgaca tgataccaag tacttgtcta tgttggggac 51 atctgataaa ttaggaaatt agtgtatgtc cttataaaga aataaggaat 101 tcgggatcag tttgaaacat attaaagtta ggattacatg tgactaaaaa 151 gccaatagtt attgataata aagcccagcc cataaaacga cgactcttga 201 GTCTAGACGG TTTTTGGAAT CTGAAGTGAA TCGTCGGAAA AATTTATCAG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G20940 |PROD: the same as GENE |complement(9009113..9009782) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.28 C - 0.20 1 attaacattt acacgaccat aaacgtcata acgaatcaat ccttcggcta 51 ctaaaaaggt gacaacttta ttttttaata ggcgcaaatg tagacaatta 101 ttgtttataa gaatactaac gggctttgaa atggaccgaa ataggcccaa 151 gaggggttta aatgaagata aaccctaagc tgaacaaacc ttctttcctc 201 ATGTGCGTCG GCTTCGCTTC TGGAAGATTC TGAAAATCAC CGATTTCGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -23 : -31 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -31 : -23 AAACCCTAA AC RSP01013 Mean Expected Number 0.007 +strand -116 : -107 CAAATGtAGA AC RSP01031 Mean Expected Number 0.008 -strand +31 : +24 AGAATCTT AC RSP01060 Mean Expected Number 0.005 +strand -106 : -98 CAATTATTG AC RSP01060 Mean Expected Number 0.005 -strand -98 : -106 CAATAATTG AC RSP01077 Mean Expected Number 0.002 -strand -98 : -106 CAATAATTG AC RSP01303 Mean Expected Number 0.005 +strand -32 : -23 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -32 : -23 TaAACCCTAA AC RSP01600 Mean Expected Number 0.008 -strand -70 : -77 TTTCAAAG AC RSP01761 Mean Expected Number 0.000 +strand -17 : -6 aCAAACCTTCTT Totally 11 motifs of 10 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: C2 domain-containing protein (sytA) |LOCUS: AT2G20990 |PROD: the same as GENE |9021643..9025177 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +265 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.32 C - 0.11 1 attgatgtat gtagaaagtt atgaaaaagg aataagattt tcattaatta 51 atttattata gtatcatcag aaagcaatgt tattattcga agagagaata 101 aaaattaaaa aaattaaatt aaATTGCtga tattttttat ttttaaaagt 151 aaaagacaaa aaaagaacaa taaaataaat tggtccgtgt ctttagcagc 201 GAAGCGCACA CAAAGTTTGC TTGCCTTCTG GGCTTCACGA TTCTCACGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.009 +strand +45 : +50 CACGAC AC RSP00288 Mean Expected Number 0.008 +strand -20 : -15 TGGTCC Totally 2 motifs of 2 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G21185 |PROD: the same as GENE |complement(9083518..9084129) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.31 C - 0.19 1 tttgtaattt gtcctaagaa aaacgcaaaa taaatatgat gaaaccaaat 51 acttaatcag cttagtatca atacgaatat cccttgaaat tagagaaact 101 atggtctgac taatccacaa aacacatatg taaattacca cataaattcc 151 ttcgttaccc cactagctag tacttatgtt tttttctaaa aacagtgagt 201 GGTATCATCA TCGACCATAA TAATATCATT TATAGTGTAC CTAACAAACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00503 Mean Expected Number 0.002 +strand -38 : -31 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -31 : -38 CTAGCTAG Totally 2 motifs of 1 different REs have been found Description of REs found 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ER lumen protein retaining receptor family protein |LOCUS: AT2G21190 |PROD: the same as GENE |9087946..9089963 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.16 T - 0.28 C - 0.12 1 aaaaattagt ttggtatttt tatgatatat aaaaagaaat cctaattaaa 51 aaatggtaat tcaagaaata tttattccaa caaaaaaaaa acagataaat 101 actttcttat agggcctaaa acggtttttg tgacccggcc catttaatgt 151 gagtcacaaa tggagttatc ttatagttta cctgtaaaaa aaaaactttt 201 GTCGTCACTT AACCGAGAAA GCAAAAGAGA AGAAGAAGAA GGAATCGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.001 +strand -3 : +7 tTTGTCGTCA AC RSP00421 Mean Expected Number 0.008 +strand +12 : +18 ACCGAGA AC RSP00969 Mean Expected Number 0.000 -strand +8 : -2 gTGACGACAA AC RSP01061 Mean Expected Number 0.000 +strand -52 : -44 GTGAGTCAC Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G21195 |PROD: the same as GENE |9090246..9090990 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.30 C - 0.22 1 cgttgcaagc cgcataattt gcaaagaacc tgtaactaca aagaccacaa 51 agaatttggt ttgctgctag tcttaagatt ttacccgaaa cactactgtt 101 cactgATTGG gctaaattta tgtctgtata cgtaaatagg ccggttaatt 151 acgaataggc ccaatgctta tataatctga accgttctct tatttttttt 201 GTTATCGACA CTATTACACC AAAGAGATGG AACCGCCGGC CACCGCATCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.007 +strand +40 : +49 CCACCgCATC Totally 1 motifs of 1 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: mannose 6-phosphate reductase (NADPH-dependent) |LOCUS: AT2G21260 |PROD: the same as GENE |complement(9112666..9114461) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.28 C - 0.22 1 cagacacaac ccaagtaaag atgcaaactt tgaggacctg tgataacgtt 51 gcttgtatat atatataccc atacggtgcg tattgattca tgtctttgta 101 aaacagtttg ggcttcacaa aaaacggtac tagcccATTG Ggcctcgaat 151 agtgaggaat catgaccact ttatattgac gtgtgcgtta ccaacttacc 201 ATACTGGGAA ACTCTCAATT CTGAGCAGAT ATCTACCCAA TCACGGATTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.002 -strand -16 : -23 CACACGTC AC RSP01258 Mean Expected Number 0.003 +strand -24 : -17 TGACGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: enhanced disease susceptibility protein |LOCUS: AT2G21340 |PROD: the same as GENE |9139638..9143524 |SUPPORT | 14 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.37 C - 0.21 1 cctttgtctc caacatgaaa acaacgcttt tacagtcaca cattgcctta 51 ccaattttcc cactttctgt ttcttaatta ttttggttct ctttgctttt 101 aaaatctcaa tttgactaac cggttaggtg taCCAATcat tagaccgaat 151 gcttacatga gtaaatgagt tcacaggaaa cttgagttgt gttgttttct 201 ATCAGTTAAT CAACGCAACG CCGAGAAGCT TTTTCAGGGG TTTGGTGCGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00709 Mean Expected Number 0.010 +strand -126 : -118 TAATTATTT Totally 1 motifs of 1 different REs have been found Description of REs found 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G21780 |PROD: the same as GENE |9298116..9298749 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.35 C - 0.19 1 ccctctctct ttaaacaaaa ttaaataata tcagaagaca cgttcttctt 51 cttacgaaac cgactttgta gtttcttctt tttttccatt acacaaaaac 101 gaaaaaacga caacacaaaa acaaataaca aaatctttta aataaaaaat 151 aaatcgactc tcgtgtttgt ttaacttctt gtttattttt cttagaggtt 201 AATTAATTTC TTCTCTACAT GAACGATCCA ATGGGAGAAA CAGGATTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01035 Mean Expected Number 0.004 -strand -158 : -164 ACGTGTC Totally 1 motifs of 1 different REs have been found Description of REs found 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: violaxanthin de-epoxidase-related |LOCUS: AT2G21860 |PROD: the same as GENE |complement(9325338..9327082) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.29 C - 0.21 1 attcgaaaca aaagcgtggc aagcaaaatc aacccgagaa actattatag 51 ttttgtattt agtagaccaa attcgaacca aatctaaccg aaatgggatc 101 tggagtatca tacattctag atgaattaaa CCAATcatat cgaacacgtg 151 gcttgtctgt gaacaattat aatgggtttg tctgagagac gttaacaact 201 GTTTTCTTCG CCATGGCGGC GATTCCTCTC AAAGCTCCTT CTCTTCCTGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -57 : -49 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -56 : -49 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -58 : -49 aACACGTGGC AC RSP00819 Mean Expected Number 0.003 -strand -49 : -58 GCCACGTgTT AC RSP01034 Mean Expected Number 0.006 +strand -55 : -49 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -57 : -50 ACACGTGG Totally 6 motifs of 6 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: Ras-related GTP-binding protein, putative |LOCUS: AT2G21880 |PROD: the same as GENE |complement(9331713..9333401) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.35 C - 0.18 1 aaaacaagaa gaaataaata ctgacgtcta tttttttttg tcaataacaa 51 ttgaattaaa aaagggactt ggatttttag attcgtattc gtattcgctg 101 gcttggccaa actatttgct tttagttggc aaaggattca catggtttct 151 cttcacatca accaatatca taataacacg tgataacttc ttcttctttt 201 GTCCTTTTCC TTTTTTTCCT CCCAGAAGAC AGAAGAAGAA GCAAGATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00203 Mean Expected Number 0.005 -strand -171 : -180 TAgACGTCAG AC RSP00331 Mean Expected Number 0.006 -strand -52 : -60 GAAACCATG AC RSP00445 Mean Expected Number 0.009 +strand -143 : -134 AAAAAAGgGA AC RSP00524 Mean Expected Number 0.006 +strand -25 : -19 ACACGTG AC RSP00917 Mean Expected Number 0.003 -strand -39 : -48 GTTGATGTGA AC RSP00978 Mean Expected Number 0.002 -strand -17 : -26 ATCACGTGTT AC RSP00996 Mean Expected Number 0.005 -strand -39 : -48 GTTGATGTGA AC RSP01233 Mean Expected Number 0.010 +strand +40 : +46 AGCAAGA Totally 8 motifs of 8 different REs have been found Description of REs found 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SEP2 |LOCUS: AT2G21970 |PROD: stress enhanced protein 2 (SEP2) |complement(9364063..9364996) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.31 C - 0.22 1 ggttcattca gctttcgaat ggataaaagc aaaacgacac gtagttcaaa 51 cgtatttttc taaatttcat tttttgtttg aaaagcaagt tactgaggga 101 aaacggagcc acgtcgaACA ATatcttgac acctcacaat aaacgacacg 151 acgtgtacac tttcgtcacc atgtagattt ctctttttgt tttccccctc 201 AAATTCTCAC TTTACTCAAA AGATTCCTCG GATCATCAGA AAATGGCTAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.005 +strand -165 : -156 GACACGTAGt AC RSP00070 Mean Expected Number 0.003 -strand -158 : -165 TACGTGTC AC RSP00682 Mean Expected Number 0.001 +strand -93 : -84 GCCACGTcGA AC RSP00842 Mean Expected Number 0.002 +strand +27 : +34 CTCGGATC AC RSP00879 Mean Expected Number 0.009 -strand -184 : -190 CGAAAGC AC RSP00986 Mean Expected Number 0.001 +strand -92 : -85 CCACGTCG AC RSP01034 Mean Expected Number 0.006 -strand -87 : -93 ACGTGGC AC RSP01035 Mean Expected Number 0.009 -strand -159 : -165 ACGTGTC AC RSP01260 Mean Expected Number 0.003 -strand -157 : -164 CTACGTGT AC RSP01621 Mean Expected Number 0.010 +strand -45 : -36 TACACTTTcG Totally 10 motifs of 10 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: UBP1 interacting protein 1a (UBA1a) |LOCUS: AT2G22090 |PROD: the same as GENE |complement(9395358..9397587) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.51 G - 0.10 T - 0.23 C - 0.15 1 taaagcaaat atttaaaaat atgtaaaata ataaaaatat tcaaaataaa 51 ccaatccaaa aataatctaa atatttgaaa atatattcaa agcaaaatac 101 tcgaataaaa aaaaaattaa actgaaaaaa tcggaaaaac gacatctcga 151 ggataaagta aatcgaactc ttgacccgag gggaaacagg aaactgaaat 201 CAAAAATCAA AAATCAAAAT CCCTAAAAGC TTCTTGACTC GTTTATCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.003 -strand -160 : -171 AATATTTTTATT AC RSP00234 Mean Expected Number 0.004 -strand +30 : +21 GCTTTTAGGG AC RSP00377 Mean Expected Number 0.006 +strand -152 : -143 AACCAATCCa Totally 3 motifs of 3 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT2G22100 |PROD: the same as GENE |complement(9399290..9400642) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.23 T - 0.29 C - 0.19 1 tgttgcaaaa aaaaaagcat gtctgagccc gggttcgaac cggggacctc 51 tagtgtgtga gactagcgtg ataaccgact acaccaccca gacgtttttg 101 ttagactctt tactttatta taaatatact taaataatct agtgttctct 151 ggtgcaccct attttagagg agttactcta ttcagagtgt tttttttggt 201 AGCCACTGCC GTCAACAATG GCGAAAGAAG GAGAAGAACG TAAGAAGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01006 Mean Expected Number 0.005 +strand -118 : -112 ACCACCC Totally 1 motifs of 1 different REs have been found Description of REs found 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: lipid-associated family protein |LOCUS: AT2G22170 |PROD: the same as GENE |complement(9433929..9434891) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.34 C - 0.24 1 aaatatgcaa tttttttcga aatctgacaa cccatgccga cctgtccgcc 51 gagttaacga cgtgcttata ggatccttaa gtatttttat tcttatttct 101 tactcattcc aacggaccaa aaacgaccac gtcatcttca tacgcaactc 151 ccaaaacaga cgataattaa atcattgaaa tctaaactct catatacttt 201 AGCATTTTCA ACATTTCTAT TAATATTTCC ATAGACTAGA TCTCTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.005 +strand -121 : -110 AgTATTTTTATT AC RSP00140 Mean Expected Number 0.002 +strand -122 : -110 AAgTATTTTTATT AC RSP00214 Mean Expected Number 0.003 -strand -67 : -74 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -74 : -67 CCACGTCA AC RSP00358 Mean Expected Number 0.007 +strand -56 : -49 CAACTCCC AC RSP00423 Mean Expected Number 0.007 +strand -142 : -137 GACGTG AC RSP00424 Mean Expected Number 0.007 -strand -137 : -142 CACGTC AC RSP00861 Mean Expected Number 0.005 -strand +51 : +43 AGAAAGAGA AC RSP00913 Mean Expected Number 0.006 -strand -65 : -74 GATGACGTGG AC RSP00915 Mean Expected Number 0.010 -strand -65 : -74 GATGACGTGG AC RSP00916 Mean Expected Number 0.006 -strand -65 : -74 GATGACGTGG AC RSP00997 Mean Expected Number 0.006 -strand -65 : -74 GATGACGTGG AC RSP01275 Mean Expected Number 0.006 +strand -75 : -66 aCCACGTCAT Totally 13 motifs of 13 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: DNAJ heat shock family protein |LOCUS: AT2G22360 |PROD: the same as GENE |9504675..9507695 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +567 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.39 C - 0.20 1 tggtcgacta attttatttt atttttccct ttcactaggg tttcctgact 51 tgttaaacaa gctttagctc tccgattaac agctaacagc tcttttacca 101 ctcagaccct ttattttttt atcccggcca cctattattt attttgcttg 151 attttatttc attaataaaa tttataggaa aaaagaaaaa atttaaaaat 201 AAGAAACAAG AGGTAGGCTC TTCTAGCGAA CTCCTTTCAT ACGTTTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.004 +strand -22 : -13 AAAAAAGAaA AC RSP01017 Mean Expected Number 0.003 +strand +2 : +9 AGAAACAA Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: peroxidase 17 (PER17) (P17) |LOCUS: AT2G22420 |PROD: the same as GENE |9520299..9521615 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.06 T - 0.33 C - 0.23 1 cttcagattc atcattcaat aatttcacaa acccataatt ttaccaaatt 51 actacactaa tcccccattg gcaccaattc tataattaga aaatttattt 101 ctttatttat ttatttattt atttctattt attaaagaaa taaattatag 151 aaattggaat gcccaccacc accagagacc acacttgcac aaattccatc 201 TATAAACACA AAAGCCTTTA GTATCATTCT CGAAAACCAC CAAAAACCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.007 +strand -124 : -109 aTTCTATAATTAGAAA AC RSP00085 Mean Expected Number 0.007 -strand -109 : -124 TTTCTAATTATAGAAt AC RSP00115 Mean Expected Number 0.008 -strand -73 : -83 ATAGAAATaAA AC RSP00843 Mean Expected Number 0.008 -strand -129 : -134 GCCAAT AC RSP01463 Mean Expected Number 0.007 +strand -96 : -84 ATTTATtTATTTA AC RSP01463 Mean Expected Number 0.007 +strand -92 : -80 ATTTATtTATTTA Totally 6 motifs of 4 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 788. Group RE: CAT /AC: RSP00843//OS: Zea mays /GENE: H3C4/RE: CAT /TF: Uunknown TF 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: mitochondrial substrate carrier family protein |LOCUS: AT2G22500 |PROD: the same as GENE |complement(9570304..9571831) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +279 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.31 C - 0.24 1 aattaccaaa tatttagtca aaaaataatt tagtgaatat atcaaaaata 51 aaaaataaag gaaagtcgga cgatactaac aaaattatta aaggaagatg 101 aatttctctt tccttgtgcg caaaatagca acaagtctcc gcgtttcctc 151 tctttctctc tttcccttat ttaaacacac ttcgtcttct acctctaaac 201 AATCTCACCT TCTCTCTCCC TCTCTATAAC AAACATTAAT ACACACACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.006 +strand -120 : -109 AaAATTATTAAA AC RSP00653 Mean Expected Number 0.005 +strand -97 : -87 TTCTCTtTCCT AC RSP00653 Mean Expected Number 0.005 +strand +10 : +20 TTCTCTCTCCc AC RSP00861 Mean Expected Number 0.003 -strand -44 : -52 AGAAAGAGA AC RSP00863 Mean Expected Number 0.002 -strand -48 : -56 AGAGAGGAA AC RSP00865 Mean Expected Number 0.002 -strand +19 : +11 GGAGAGAGA AC RSP01733 Mean Expected Number 0.007 +strand -62 : -57 CCGCGT Totally 7 motifs of 6 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: isochorismatase hydrolase family protein |LOCUS: AT2G22570 |PROD: the same as GENE |complement(9596518..9597959) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.35 C - 0.20 1 ccccgtgcct ctcgcatgcg aaacgagcgc tctaccatat gagctacacc 51 cccaattggt aacaatacta attttattta ttatatcgaa atacttaaaa 101 cagaaattta tattatctga aaattatctg actaagcaaa acatgatcca 151 gtttttgatc atgtttactc tatattaatt actttacaaa tttttgatcc 201 AGTTTTCTCA ATTTTTTCTA GACTCGTATC GATATGGCGA ATCATGAAAC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: BRK1 |LOCUS: AT2G22640 |PROD: BRICK1, putative |9630148..9631298 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +215 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.07 T - 0.32 C - 0.21 1 tgctcaattt ttaattgata gtgacatttg aatagaacga aaaagattga 51 acactaacta agcaatctac caaaatatta aaccaaacca cataatatca 101 aatatcttaa attataaaat agcccctata tttcctcttt atctcataaa 151 acacccgttt cttcttctaa tcttaacttc ttcttcatca atcacacatc 201 ATCTAAAAGA AAAACAACCT ACGATAAAAT TCAGAAACTT TTTCTCTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00521 Mean Expected Number 0.005 +strand -50 : -44 ACACCCG AC RSP00915 Mean Expected Number 0.009 -strand +3 : -7 GATGATGTGT AC RSP00997 Mean Expected Number 0.006 -strand +3 : -7 GATGATGTGT AC RSP01030 Mean Expected Number 0.009 +strand +33 : +40 AGAAACTT Totally 4 motifs of 4 different REs have been found Description of REs found 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G22690 |PROD: the same as GENE |complement(9656770..9658519) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +474 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.21 1 agagccgaga gacctagctt cttcatatat acatttcgtt aacttggaga 51 ggacacctca aactgtcgca tttaatttta attaactagg cccacgtaaa 101 aatattctcg gcccaaatag ttacATTGTt gaaaagaaac cgatcaaatc 151 caacggctgt gattcattca tcttcaagat cagagagatt gattatttca 201 AAGAAACTGA AGAAGAAATC TGCAAATTCA TCTTCTCTTC TTCCTCCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.002 +strand -64 : -53 AAACCGATcAAA AC RSP01497 Mean Expected Number 0.002 -strand -44 : -53 GCCGTtGGAT AC RSP01600 Mean Expected Number 0.008 +strand -5 : +3 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: casein kinase II alpha chain, putative |LOCUS: AT2G23080 |PROD: the same as GENE |9834201..9836617 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.19 G - 0.20 T - 0.41 C - 0.20 1 aatttgcttt atttctctcc tttctttttc tttggcttct cttcgaaacg 51 atgtcgttta aacaattcgg tccggttata gtgtgattga aatcgatccg 101 ATTGGgtttg tttcggttcg agtgtggttg aatcggttcg atttggttta 151 ggtggttttt gggtatcaga gattcttctt caaccttttt ctaatcctgc 201 ACAACGCACT TCTTCTGTTG TCATCATCAT CGTCCACTTG AAACAAACCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.002 +strand +42 : +48 AACAAAC AC RSP00120 Mean Expected Number 0.000 -strand -142 : -155 AAACGACAtCGTTT AC RSP00211 Mean Expected Number 0.001 -strand -132 : -142 CgAATTGTTTA AC RSP00941 Mean Expected Number 0.002 -strand -109 : -116 TTTCAATC AC RSP01594 Mean Expected Number 0.002 +strand -116 : -109 GATTGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G23090 |PROD: the same as GENE |complement(9836530..9837490) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.32 C - 0.14 1 tgttggtcaa ctgatttatt cagaccaaaa aaaaaaaaaa aacctcagtc 51 gtttaaacgt taaaggttct tgttttaacg ggccttaaat ggataataag 101 tccgaaggcc cattatgttg aattatctag aatccaaaat aactttaggt 151 gattggtgag taggcgaatt aaatgtaagt ggacattaca gaaaaagaat 201 CAAGTGGCAT CGTTTTTTTC TTTCTCATAT AAATCTTTTC ACATTAGAGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.008 -strand +7 : +1 CCACTTG AC RSP00860 Mean Expected Number 0.002 -strand +25 : +17 AGAAAGAAA AC RSP01103 Mean Expected Number 0.004 +strand -161 : -154 AAACCTCA Totally 3 motifs of 3 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AGP17 |LOCUS: AT2G23130 |PROD: arabinogalactan-protein (AGP17) |9851379..9852465 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.24 C - 0.27 1 tatgccaact ctccagctgt ttatccgtct agcaaacaaa aacaaaaaat 51 gccgtagaaa accaaaatta ggaaacaacc aaagatattg ggcccaatgc 101 cagactgggc ctagctcaaa tattacaaca accacacata atttttatac 151 tctgctccaa cggctactaa tcaccgtagg tcccttcaac ggtccagatc 201 TCTCAAATAT TTTCTCCTAT ATACAACATG CAAAGATACA TACACTCGAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.003 +strand -12 : -5 ACGGTCCA AC RSP00442 Mean Expected Number 0.006 -strand +38 : +29 TAtCTTTGCA AC RSP01223 Mean Expected Number 0.001 -strand -38 : -46 CCGTTGGAG Totally 3 motifs of 3 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 1129. Group TF: C-myb /AC: RSP01223//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: C-myb motif /TF: C-myb ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATRER1C |LOCUS: AT2G23310 |PROD: RER1C protein |9924600..9926298 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.30 C - 0.21 1 ttggagactt ggagttggct cccatatact taaatcttca aacataagtt 51 aatgtgttat actatatttt caaccagtag accaatcata taaatcgttt 101 aataatttct gaaccactaa acccgcaagt aaaccgatag ATTGAtcgta 151 taatttcaac cggttcggat agtaaatagt agatcttccg taaaccggat 201 ATGATCTGAT CTGATCTCCC AAAAAGTCCC AAATCCAAAT CTACGAATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 -strand -188 : -197 TCCAaGTCTC Totally 1 motifs of 1 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ICK1 |LOCUS: AT2G23430 |PROD: |complement(9983826..9985040) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.27 C - 0.31 1 ataagtaact ccataacatc caaataacgg cgcctccagt ttccccgtta 51 aagattcccc gtcactgtaa cgggaccact aaaacacgcc atttctctat 101 cacacacagc acaaaacTCA ATcctgaccg ttcaaaacca aattcatcat 151 ctttctttct tcttcttcct catcctctca atcatatctc tctctctcac 201 AGAGATTGTG ACTTCACGCA CACGTAACCT AAATCGAAGA TGGTGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.003 -strand +47 : +42 CTCACC AC RSP00716 Mean Expected Number 0.007 +strand -68 : -60 CAAAACCAA AC RSP00860 Mean Expected Number 0.002 -strand -41 : -49 AGAAAGAAA AC RSP00864 Mean Expected Number 0.003 -strand -4 : -12 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -6 : -14 AGAGAGAGA AC RSP00895 Mean Expected Number 0.001 -strand -122 : -129 GTGGTCCC AC RSP01261 Mean Expected Number 0.007 -strand +27 : +20 TTACGTGT Totally 7 motifs of 6 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT2G23600 |PROD: the same as GENE |complement(10049279..10050753) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.19 T - 0.29 C - 0.10 1 tttaataagt gtaaagtttc ttatccgcag agccaaaatg tcgcttttaa 51 aaagaaaaat tccaaagtta tttctttatg caagaaaaaa ttcgaaattt 101 taattatcac gtaaaatcat aaaagaatct caaaggaaag cgACAATttt 151 ggaaaattca acgataagct ttataatttt tctacttatg agtggatgtg 201 TGAAGAGTAG GGAAAAAGTA CGAAAGGAAA ATATGAGTGA GGAGAAGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00722 Mean Expected Number 0.007 -strand -176 : -182 GATAAGA AC RSP00933 Mean Expected Number 0.002 +strand -31 : -19 TTTATAATTTTTc AC RSP01030 Mean Expected Number 0.006 -strand -180 : -187 AGAAACTT AC RSP01475 Mean Expected Number 0.001 +strand -168 : -160 CCAAAATGT AC RSP01699 Mean Expected Number 0.007 -strand -89 : -95 ACGTGAT Totally 5 motifs of 5 different REs have been found Description of REs found 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G23670 |PROD: the same as GENE |complement(10070235..10070943) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.42 C - 0.12 1 tattttgctg agttttgggg ctgaaagtgg attgaaaata aataaaataa 51 attggattta acgtacaaaa tgttttatta ttctttaatt ataatctttt 101 ttatacccat ttatcaaaga atcTCAATgg agatgacgtg tcacgtcaat 151 tgacaatgaa attattttgt tatcttatat attatcaaaa cttttcgtat 201 TTTCTATTTC ACATCTGAGA GCTTTTTTCG TTTCTTGTGA GATCATCTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00423 Mean Expected Number 0.008 -strand -54 : -59 GACGTG AC RSP00424 Mean Expected Number 0.008 +strand -59 : -54 CACGTC AC RSP00460 Mean Expected Number 0.004 -strand -59 : -68 GACAcGTCAT AC RSP00525 Mean Expected Number 0.009 +strand +11 : +17 ACATCTG AC RSP00916 Mean Expected Number 0.001 +strand -69 : -60 GATGACGTGT AC RSP00941 Mean Expected Number 0.009 -strand -164 : -171 TTTCAATC AC RSP00997 Mean Expected Number 0.002 +strand -69 : -60 GATGACGTGT AC RSP01035 Mean Expected Number 0.004 +strand -65 : -59 ACGTGTC AC RSP01068 Mean Expected Number 0.004 -strand -56 : -64 CGTGACACG AC RSP01258 Mean Expected Number 0.002 +strand -67 : -60 TGACGTGT AC RSP01594 Mean Expected Number 0.009 +strand -171 : -164 GATTGAAA AC RSP01654 Mean Expected Number 0.004 +strand -69 : -60 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 +strand -69 : -58 GATGACGTGTCA Totally 13 motifs of 13 different REs have been found Description of REs found 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G23780 |PROD: the same as GENE |complement(10130386..10131716) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +402 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.31 C - 0.18 1 ttcctttaaa ttttataatc cttcgggaat ctagtttacg tttaaaacga 51 gcttttggca tcattttatc taccaaaatg tgttgttgta gctaatcagg 101 cCCAATatca gtttagaaat taatataatc ggcccaataa ttaatcaaaa 151 cttccaaaga aaatatatgg aaaaaaaacg agaaaaacca aaagtcagat 201 ATAGCCTGGA ACTTTCTTTC CCAACAACAG TAAGACTCTG TTTTTTCCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.007 -strand +43 : +34 aAACAGAGTC AC RSP00681 Mean Expected Number 0.008 +strand -63 : -55 TAATTAATC AC RSP01086 Mean Expected Number 0.006 +strand -166 : -157 TTTACGTTTA AC RSP01475 Mean Expected Number 0.002 +strand -128 : -120 CCAAAATGT Totally 4 motifs of 4 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: cinnamoyl-CoA reductase-related |LOCUS: AT2G23910 |PROD: the same as GENE |10184914..10187144 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.35 C - 0.23 1 aaaaaaagaa ttacgttttt caatcaatta tttattattc tgtttttttt 51 tccaccggtc aatggattaa ccaacaacac aaagccatat agtaaaacaa 101 gaagatgagt aggttgggag cgtgcaACAA Tgaaatagtt cacccacctt 151 tctcctattt attactactt ccttctcctc acgtctctcc tctacatagt 201 AAGACCCAAC TAAATATCTT CTTTTCTCTC CATACACTTT TTCCAGATAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00574 Mean Expected Number 0.010 -strand -159 : -166 CAGAATAA AC RSP00934 Mean Expected Number 0.002 -strand +17 : +8 ATATTTAGTT AC RSP00962 Mean Expected Number 0.004 +strand -95 : -89 TGAGTAG AC RSP01167 Mean Expected Number 0.008 +strand +11 : +19 TAAATATCT Totally 4 motifs of 4 different REs have been found Description of REs found 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G23940 |PROD: the same as GENE |10191202..10192397 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.29 C - 0.20 1 atcatgaggt atatatggtt aaagtgtttt tgcattgaga attcgggata 51 ttcattattt gcagcttctt gttaaggatc cctcaaaaca actttccgtg 101 gattgtcaag aacgcagatc cgaaagctca ATTGGgccta tttacaggct 151 taggcccata tactactaga ttcatcggaa gcgaaacagt gagcgtcgtt 201 GTCTTTTTCA ATAACCTCTG CTTCGCCGGA AAAACAAACA GACGACGACT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00295 Mean Expected Number 0.000 +strand -68 : -43 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -43 : -68 TGGGCC-- ** bp --GGCCCA Totally 2 motifs of 1 different REs have been found Description of REs found 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G24140 |PROD: the same as GENE |complement(10269634..10271113) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +380 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.39 C - 0.18 1 atggcccaac ttaagaaact ttctactttt aatgatatag acaaagcata 51 atgatgatat ttttggtcaa gcgtggcttg tgtgaatgaa actatttccc 101 tttttttgct ttttccattt attaggtcta attttgtcga attttaacat 151 tttagtttcc aatgtgtcct ttaatacaca aaacttttcc ccacaaaagt 201 GTTTTTTGAC ATCTTTCTGA GCCAAATTTG GGGACTAGCT CGTCGACAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00534 Mean Expected Number 0.001 +strand -153 : -141 ATAATGATGATAt AC RSP00727 Mean Expected Number 0.005 -strand -129 : -135 GCTTGAC AC RSP00741 Mean Expected Number 0.007 -strand -48 : -59 AAAAtGTTAAAA AC RSP01030 Mean Expected Number 0.006 +strand -187 : -180 AGAAACTT AC RSP01033 Mean Expected Number 0.010 +strand -102 : -93 CCTTTTTTTG AC RSP01076 Mean Expected Number 0.001 +strand -133 : -124 CAaGCGTGGC AC RSP01621 Mean Expected Number 0.005 -strand +3 : -7 aACACTTTTG Totally 7 motifs of 7 different REs have been found Description of REs found 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: kelch repeat-containing F-box family protein |LOCUS: AT2G24540 |PROD: the same as GENE |10433422..10434674 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.33 C - 0.24 1 acagtaactg caattataac tatcttgaaa attgtctcta catagataca 51 cacgtaatct gagaattgtt ggctccaaat aaccacaaac gtggactcat 101 gtgtaaccac tagttttctc gagactctca accatccacc gtcccatgtc 151 gtaattatgc gaatgtgacc ttttatcaat caagatccaa ctacattcat 201 GGATTTGATT TCTTTTCCCA AACTTTAACA TTTTATATCT AAAACCATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.008 -strand +15 : +5 AaAGAAATCAA AC RSP00998 Mean Expected Number 0.001 +strand +20 : +33 AAACTTTAaCATTT AC RSP01261 Mean Expected Number 0.005 -strand -144 : -151 TTACGTGT AC RSP01734 Mean Expected Number 0.003 -strand -106 : -112 TCCACGT Totally 4 motifs of 4 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: zinc finger (B-box type) family protein |LOCUS: AT2G24790 |PROD: the same as GENE |10573977..10575224 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.25 C - 0.31 1 tgaacccaag ttaatacacc ttcacatgat tagccccact tctcctaaat 51 gtctcgtaaa ctccaactat tcggctaaga ttcactaacg tgtcatctct 101 ctattcgcta ttcccagatc tccatgaccc acttcactcc ctgcgcgtcc 151 ggtacaatcg ccacttccat aacaccaaga gtcaatacaa aaaaaaagcc 201 GACTCCATTA TTATCCCTCT CTCTACAAAA AAAACAGTAG AGAGAGATAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.000 +strand +39 : +47 AGAGAGAGA AC RSP01035 Mean Expected Number 0.006 +strand -113 : -107 ACGTGTC AC RSP01559 Mean Expected Number 0.009 -strand -53 : -58 ACGCGC AC RSP01642 Mean Expected Number 0.007 +strand -154 : -145 AAATGTCTCg Totally 4 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: Rieske (2Fe-2S) domain-containing protein |LOCUS: AT2G24820 |PROD: the same as GENE |10582058..10584553 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.16 T - 0.28 C - 0.13 1 ttttttcatc actatgaaat gtattaaagc aaaaaagact aatgttaaaa 51 cttaaaagat taaaaataaa ataaaaagaa gttaaaatga catttaaata 101 acgtaaaaat aaacgacgtc gtttagccaa agtttctact atctatgtat 151 gtggtggaac gaggtccaat ggttgaacaa gcaaccttat gatatatttt 201 ATGAGAAGAG GCAAACAACA CCTAACATTG GATTCGAGCT CTCTAGTGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.009 -strand -1 : -9 AAAATATAT AC RSP01030 Mean Expected Number 0.006 -strand -64 : -71 AGAAACTT Totally 2 motifs of 2 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: TAT3 |LOCUS: AT2G24850 |PROD: aminotransferase, putative |complement(10589909..10592295) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.36 C - 0.16 1 ttttcttgtt ttttgtgcaa gtctgtaatc agactaaaat atcattaatt 51 tcatcgtatg ttcttaaagt attaaaatat tgatcgtagc atgtggaaaa 101 tgttgattat tattcttatt ttaaggtctt cattttttgt agtcttgcga 151 cgacccttga ctttaaatcc tttataaagg cctcgactaa aatgagatgt 201 ACCAACAACA CAAAACTTGT ACTCACAACT AAAAGAAGAA CTCAAACGCA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: chaperone protein dnaJ-related |LOCUS: AT2G24860 |PROD: the same as GENE |complement(10593854..10595408) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.29 C - 0.17 1 acaagcaatc tggattttgt tttgactgta ggaagaatcc aaggaattgt 51 agaggagata atgagttggt ttaaatcatt gaatcaatca ttttagcaaa 101 caaaaagatc caactttaat gggcccaggg tCCAATaacc caattgggtt 151 attcctagac ttttctcctc ctcctgttgt cttccaattt ggtatgcgag 201 AAAAATAAAA TAAAATAAAA ATAAGCCAAA GACAAATTTA AACCTCCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00778 Mean Expected Number 0.004 -strand -115 : -124 TGATTCAATG AC RSP01104 Mean Expected Number 0.003 +strand +40 : +47 AAACCTCC AC RSP01190 Mean Expected Number 0.001 +strand -76 : -67 CCAGGGTCCA AC RSP01192 Mean Expected Number 0.001 +strand -76 : -67 CCAGGGTCCA Totally 4 motifs of 4 different REs have been found Description of REs found 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G24970 |PROD: the same as GENE |complement(10627198..10628386) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.27 C - 0.19 1 ttgagattta aatgacattt cgaaagttca tgtattttcg tcataagttt 51 gaaagttacc tattttttcg acatcccccc tccccatcca aaataacatt 101 aacacacatc atgttgttat ttaagttaag gcaagaactc cctgccgttt 151 aggcccctcg cttctttggg tagaaaagag gcgggaaaaa tagataaacc 201 CTAAAAGAGT GAGAGCAAGA AGTAAAATTG AGAGAGCGAG AGCGAGCTAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.003 -strand -13 : -20 TTTCCCGC AC RSP00279 Mean Expected Number 0.002 -strand +4 : -5 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -5 : +4 AAACCCTAA AC RSP00460 Mean Expected Number 0.005 -strand -180 : -189 GAaATGTCAT AC RSP01303 Mean Expected Number 0.004 +strand -6 : +4 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -6 : +4 TaAACCCTAA AC RSP01435 Mean Expected Number 0.002 +strand -120 : -111 TCCCCAtCCA Totally 7 motifs of 7 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25010 |PROD: the same as GENE |10638649..10640736 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.23 C - 0.20 1 ttaacttcca ttagagaaga atgtgatgcc attacagaca taaaagaaac 51 agagaaaccc ggaaacagag taaaaccacg aaaaacagag tcggtttaag 101 agaaccaaac caaaataacc ggtacagcta taaaaagcca agaagaaaaa 151 ttatgaaccg agtccaaatt aggttacggt tagcttccaa tcccaacttc 201 TTCTTCTTCT TCATCTGTGT TTAGTCCCAA ATTGAAGAAT CAAAAGTTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00431 Mean Expected Number 0.009 +strand -29 : -18 GGTtACGGTTAG AC RSP01014 Mean Expected Number 0.002 -strand +17 : +8 CAgATGAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: MIR domain-containing protein |LOCUS: AT2G25110 |PROD: the same as GENE |10691214..10693164 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +293 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.24 C - 0.20 1 atcaaactaa agtgtgaatt caaaagaaca acaaaaaaaa accattaaaa 51 ttagtttagc tttgattgtg cctcaatgca acctgataca ccactgataa 101 gacgacatgt catcaaaatg acacgtgtta aaatatcatt cgctatctaa 151 acgtacacct gcgtgtcaac ataaactgag gaagttaatg aacttttttt 201 ACACTGCACG AAGAAGACCC TCTCAAAAGC ACGAGGAAGG ATCAAATCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.004 +strand -97 : -88 GACATGTCAT AC RSP00524 Mean Expected Number 0.010 +strand -80 : -74 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -73 : -79 ACACGTG AC RSP00913 Mean Expected Number 0.002 -strand -87 : -96 GATGACATGT AC RSP00997 Mean Expected Number 0.004 -strand -87 : -96 GATGACATGT AC RSP00999 Mean Expected Number 0.005 +strand -61 : -51 TCgCTATCTAA AC RSP01035 Mean Expected Number 0.010 -strand -75 : -81 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -80 : -73 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -73 : -80 ACACGTGT Totally 9 motifs of 7 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25190 |PROD: the same as GENE |10741025..10742778 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +241 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.29 C - 0.16 1 tgtttcttct aattatatag atttagttct ataaaaatac aaaacctcta 51 agtaattttc aaatttatta tatttttacc caaaacaacc ctaaaataaa 101 tgcaaATTGA agcgtggcac tgaaaataaa ataaaaatat cttaccatat 151 ttaaaacaaa taaccagatt cagtgaatta acagaaacgg atggtcaagt 201 CGACAAGACA AACAAGTGCT AAAAGAACAC AACATAACTC TTTTGCTTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.001 +strand -9 : +1 TGGTCAAGTC Totally 1 motifs of 1 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25280 |PROD: the same as GENE |complement(10769101..10771819) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.20 T - 0.22 C - 0.21 1 caaatttaca taccagaatt acctgaaaac cgaaagaacc gatccaaacg 51 aaaaaccgaa gcccaggtac ttgttgtcat gcgtatctgt aaagagtgta 101 gtaaggaaaa acagcacgaa tgtttatagg aaaaaataaa cacggcacac 151 agttttgcac tgagtttctt ccccgagttg gcgaagaaac ccagagaagt 201 AACACAACAC AGAAGTAGAA TCTTCTTTAG TCATCTCCCG CAAGTTTAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.003 +strand -131 : -122 CTTGTtGTCA AC RSP01024 Mean Expected Number 0.008 -strand -32 : -38 AGAAACT AC RSP01031 Mean Expected Number 0.005 +strand +17 : +24 AGAATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G25430 |PROD: the same as GENE |10829450..10831995 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +345 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.26 C - 0.32 1 aattacatgt atgacaaaca aaaaaaaagt aaaaaacaaa gtacatcttt 51 accttccgac aagcacacaa ctcccgacag tgccggtaaa aaaagcttta 101 gcatctcctt ctctccaaaa tcaacgactt aaaagtcgcc acgtcatcac 151 ggactccaac tttcctctta aatccatctc tgctctctct ctctctcttc 201 AGCCACCACC ATTCTCTTTT ACTCCTTCGC CGAATCTCAC AACGCCAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -177 : -166 AAAAAGTAAAAA AC RSP00113 Mean Expected Number 0.001 -strand -55 : -63 TGACGTGGC AC RSP00214 Mean Expected Number 0.007 -strand -55 : -62 TGACGTGG AC RSP00215 Mean Expected Number 0.007 +strand -62 : -55 CCACGTCA AC RSP00248 Mean Expected Number 0.003 +strand -63 : -54 GCCACGTCAt AC RSP00819 Mean Expected Number 0.003 +strand -63 : -54 GCCACGTCaT AC RSP00821 Mean Expected Number 0.003 +strand -63 : -54 GCCACGTCaT AC RSP00864 Mean Expected Number 0.003 -strand -3 : -11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -5 : -13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -7 : -15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -9 : -17 AGAGAGAGA AC RSP00913 Mean Expected Number 0.009 -strand -53 : -62 GATGACGTGG AC RSP00916 Mean Expected Number 0.009 -strand -53 : -62 GATGACGTGG AC RSP01034 Mean Expected Number 0.006 -strand -57 : -63 ACGTGGC AC RSP01106 Mean Expected Number 0.001 +strand -65 : -55 tCGCCACGTCA AC RSP01275 Mean Expected Number 0.007 +strand -63 : -54 gCCACGTCAT AC RSP01280 Mean Expected Number 0.001 -strand -53 : -63 GaTGACGTGGC AC RSP01283 Mean Expected Number 0.000 -strand -4 : -20 GAGAGAGAGAGAGAGcA AC RSP01470 Mean Expected Number 0.007 -strand -187 : -196 TCATaCATGT Totally 19 motifs of 16 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25570 |PROD: the same as GENE |complement(10892776..10894999) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.23 T - 0.29 C - 0.16 1 aatgataact tcgtatacat cagaagagca gagaccaaag tgataacaga 51 atcccagttt ggtcggaact tgtgttggtg tttcgttttg acggcgacaa 101 acttgaataa tccgaccgag aacttagcat cgacgctcga ggggaaagtt 151 gtaatttatg ataatgggct ttatatgggc ttgaataaaa tacagtggac 201 TAAAAAGCAA CTTTAGCTAA GCCTAGTTGA AGGTTTCTTT CAAAATTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.009 +strand -157 : -150 TAACAGAA AC RSP00680 Mean Expected Number 0.009 +strand -157 : -148 TAACAGAaTC AC RSP01526 Mean Expected Number 0.000 -strand -136 : -147 CGACCAAACTgG Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1374. Group RE: Box II /AC: RSP01526//OS: Pisum sativum /GENE: PsCHS1/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: H+-transporting two-sector ATPase |LOCUS: AT2G25610 |PROD: the same as GENE |complement(10908369..10909609) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.23 T - 0.24 C - 0.22 1 caacgagatt gtcccggata ttcaaatgag gaacaaggcc caatagtccg 51 atcaaagtgg gctattcgta tcgcttacga ggcctatacg atggtaattg 101 aattcacgcg cattcatcag cgcgtgattt ggagttgcTC AATttcagat 151 cgcacaggct ctgttaatca tctcctcctc cgaaagacag agaaagagac 201 AAATCAAATT CATTCATATC AAAGAGATAG AGAGAAAATG TCCGGTGTGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00247 Mean Expected Number 0.004 -strand -118 : -127 GCCtCGTAAG AC RSP00405 Mean Expected Number 0.003 +strand -73 : -66 TTTGGAGT AC RSP00680 Mean Expected Number 0.006 -strand -35 : -44 TAACAGAGcC AC RSP00861 Mean Expected Number 0.003 +strand -10 : -2 AGAAAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25625 |PROD: the same as GENE |10913532..10914366 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.31 C - 0.10 1 tggacctaac atctccaacg gaccaatgct attgggtcaa gtccatcttt 51 tctaggttaa gttcattctt tgggctttag ttaagtatag agaaagaaca 101 tATTGGaaga aaaatttaga tgtggtttgt attgcatgcg catatgaaat 151 gtaataattt gaggatacat atatagtaag aaaaaatgag tgacccaagt 201 AAGAATGGGT TAGTAGTTAT ATATATGTTG GAGGTGAAAG GAATAAAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01008 Mean Expected Number 0.004 +strand -197 : -191 ACCTAAC AC RSP01223 Mean Expected Number 0.000 -strand -180 : -188 CCGTTGGAG Totally 2 motifs of 2 different REs have been found Description of REs found 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1129. Group TF: C-myb /AC: RSP01223//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: C-myb motif /TF: C-myb ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G25720 |PROD: the same as GENE |complement(10962597..10963130) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.27 C - 0.18 1 aaaaaagagt agaagggtgc gtgcattgaa taaaataaat aaattatttt 51 taaaacacac ataaaacagg ttatcttttc ggcctattaa cagaacgatg 101 gcctaagtgt ccttttaggc CCAATaccag attgatggcc caagtctcct 151 tttcgtcgtt tcagcatttt attagaagta gaaaaaattc caaaagcaac 201 AGAAGTAGAG AGATTTGGAA AAACCTAATC GAGCAATGTC AGACCCTTAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.001 +strand -159 : -147 AATTATTTTTAAA AC RSP00254 Mean Expected Number 0.007 +strand -53 : -47 CCTTTTC Totally 2 motifs of 2 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATCTH |LOCUS: AT2G25900 |PROD: zinc finger (CCCH-type) family protein |11048796..11050249 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.30 C - 0.12 1 taaagctttg aaaacatttt tttttttttt ggggggacaa atatgaagaa 51 aaaaaaaaaa aaaaaaagac gaacatgaag gggaaaaaaa caaaagacga 101 acaaaaATTG Gagatttttt cttacacgtg tcatcatctg cagatttgcg 151 cttattaatt gtttaccgta cggtattgtg gatagggtca agattttcat 201 AACTTTACCG TAGTTAATAT TTGACCCAAC CATGGTTAAA ATAAAGCAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.008 +strand -46 : -36 tTAATTGTTTA AC RSP00340 Mean Expected Number 0.001 +strand -78 : -69 TaCACGTGTC AC RSP00383 Mean Expected Number 0.007 -strand +26 : +20 GGTCAAA AC RSP00524 Mean Expected Number 0.006 +strand -77 : -71 ACACGTG AC RSP00524 Mean Expected Number 0.004 -strand -70 : -76 ACACGTG AC RSP01035 Mean Expected Number 0.004 +strand -75 : -69 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -77 : -70 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -70 : -77 ACACGTGT AC RSP01600 Mean Expected Number 0.009 -strand -188 : -195 TTTCAAAG Totally 9 motifs of 7 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: EMB1345 |LOCUS: AT2G26060 |PROD: |11109379..11112433 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.27 C - 0.24 1 aaactaatta aataaaatta gaaatcaaat tgattttact taaaaacact 51 ttaaagttta aacctctaat ctagctttta tttttgtacc gccattaaaa 101 aataacgaac ccaaaccgaa ctcaaaccca gacccaaacc catgcccata 151 cacaaatcac gaatgcctag gcttacttgt gaccgaaacc gaattgaatc 201 ATATATAGTT TCAGGTCACC TGTTGCACAA TCTCTGCTCA GCCCTAAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00017 Mean Expected Number 0.002 +strand -93 : -59 AACCCA-- ** bp --AACCCA AC RSP00234 Mean Expected Number 0.005 -strand +51 : +42 GCTTTTAGGG AC RSP01476 Mean Expected Number 0.007 +strand -151 : -144 TTTAAAGT Totally 3 motifs of 3 different REs have been found Description of REs found 16. Group TF: SEF3 /AC: RSP00017//OS: Glycine max /GENE: beta-conglycinin/RE: SEF3-BE /TF: SEF3 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PEX10 |LOCUS: AT2G26350 |PROD: |complement(11224570..11227511) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.30 C - 0.13 1 tcgattgact attacaaaat actgcttaat atagacaaat atttgatcat 51 aaaaataatt aaaaagatta taattaataa aatattattg atctcatata 101 taaatggcat cgatacattt gcaaatattt atttttcctt tgaattaaaa 151 aaaaatatca aaggccgaat aaaaaacatc attcggcaag ttcatcgatc 201 CACGAAAAAA AAGAAACGAT GAGGCTTAAT GGGGATTCGG GTCCGGGTCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00140 Mean Expected Number 0.010 -strand -141 : -153 AATTATTTTTATg AC RSP00320 Mean Expected Number 0.001 +strand -11 : -1 GtTCATCGATC AC RSP01065 Mean Expected Number 0.000 -strand +2 : -9 tGGATCGATGA Totally 3 motifs of 3 different REs have been found Description of REs found 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RCY1 |LOCUS: AT2G26430 |PROD: ania-6a type cyclin (RCY1) |complement(11250297..11253107) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +525 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.11 T - 0.37 C - 0.27 1 atttaacatc tatggaagga gcagagacat caccacagtt caaacaatcg 51 atctcttaat tagttaatta catgtatcat cgaatcctaa aaacattttt 101 cttccttcct aagcCCAATa agggcctagt tagagtaggc ccaattattt 151 tattttcttc ctttttgcta atttctcttc ttttttttcc ctcacttctc 201 CAACAAACTC GATTTCCCGA TTTCGTCGCC TCTTCTCGTC TCTCCGCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.000 +strand -87 : -78 CCCAATAAGG AC RSP00285 Mean Expected Number 0.000 +strand -3 : +10 CTCCAACAAACtC AC RSP00930 Mean Expected Number 0.008 -strand -62 : -67 CCTACT AC RSP01185 Mean Expected Number 0.003 +strand -1 : +11 CCAACAAACTCg AC RSP01214 Mean Expected Number 0.001 -strand -78 : -87 CCTTATTGGG Totally 5 motifs of 5 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 276. Group RE: Box P /AC: RSP00285//OS: Petroselinum crispum /GENE: PAL-1/RE: Box P /TF: unknown 859. Group RE: H-box II /AC: RSP00930//OS: French Phaseolus vulgaris /GENE: CHS/RE: H-box II /TF: unknown 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: cytochrome b6f complex subunit (petM), putative |LOCUS: AT2G26500 |PROD: the same as GENE |11277225..11278031 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +223 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.33 C - 0.15 1 atgattcata ttcatatgtc tatatatata acttataaca aattatatat 51 atatgttaac atagataatt attaataaat tttctctcat aatttattta 101 gaaaaagaaa aaagaataga aATTGAgtaa agcgatgaga aacgtgtgtt 151 cagagatatt tgataaaaag aagtaaatcc atctctggcc gtaattggct 201 GTGGCAGCCA CACCCTCCTT ATCCAAAATC TCCTCCTTCC TTAAAAACAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00596 Mean Expected Number 0.007 -strand +5 : -1 GCCACA Totally 1 motifs of 1 different REs have been found Description of REs found 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G26520 |PROD: the same as GENE |11287103..11288018 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +255 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.37 C - 0.18 1 acaacgttgt tttccaattt ccatgtttac gctatagctt cagacagtac 51 ctgaaaaagt tagttcgccc aaagaccaaa actaaacaaa aataaccaaa 101 aagttactct cattttattt attaaattac ggtaaaatat cgatatcctt 151 aattactaag attttgattt tgaaatagtg ttgtcgttct cggtccaaat 201 TTCAAATTTT GACCTGAAGT CTCTTGTTTT TCTGATAGAT TCTCTAGTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.007 -strand -7 : -13 ACCGAGA AC RSP00920 Mean Expected Number 0.001 +strand -146 : -135 AAAAGTTAGTTc Totally 2 motifs of 2 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: uroporphyrinogen-III synthase family protein |LOCUS: AT2G26540 |PROD: the same as GENE |complement(11294476..11297438) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.33 C - 0.12 1 ataataaata ataatattta acaaattttg gtgattcata atttaacttt 51 actaaatttt tattgggccg tagtgtgtaa acaacttgaa tagactaaaa 101 aacactattg ggctgtagtg taacaaaATT GGgctcaaat gaaaaaacaa 151 aaaacaaaaa agagagacat taaaacgcac gtggagatag aattgtattc 201 AACTATTCAT CATCTTCGTT TGGATTTGGT TTCTTTCTGT TTCTGACAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.003 +strand -45 : -36 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.001 -strand +38 : +30 AGAAAGAAA AC RSP00871 Mean Expected Number 0.004 +strand -171 : -162 GGTGAtTCAT AC RSP01734 Mean Expected Number 0.006 -strand -16 : -22 TCCACGT Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glycosyl hydrolase family 17 protein |LOCUS: AT2G26600 |PROD: the same as GENE |11323490..11325561 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +315 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.31 C - 0.20 1 aatgaggtcc atacacgtct gatttagctg taatgttggt acgtccaaag 51 aaactcaccg tccaaccaca tcactactta accactacga aatttccatc 101 ttattattct tctttatcat ttcttattaa atTCAATtta acttcttatt 151 ttaataacca aataaaaaag tttcaacaag aataaaaaaa aagtaaagtg 201 TTATTCATAT ATTCGACAGT GACGAAAACA AGAAACTCCA ATCAAACCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01520 Mean Expected Number 0.008 -strand -193 : -198 ACCTCA Totally 1 motifs of 1 different REs have been found Description of REs found 1371. Group TF: HBP-1a /AC: RSP01520//OS: Triticum aestivum /GENE: H2B (TH 123)/RE: Hex123-a /TF: HBP-1a ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: HY1 |LOCUS: AT2G26670 |PROD: heme oxygenase 1 (HO1) (HY1) |11348762..11350650 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.33 C - 0.24 1 tttgacccat actattaaaa atataactgt cactgaatcg gctctaaatc 51 tcctcgactt tcaactccta cagacattca gacatgtgca acactcaacg 101 cactgtcgat attacataga cccgaaataa aagctccttg tccaaaaact 151 tcattcaccc tctcatcgtt atcttcattt ggaaacaact aaacaatatt 201 CTGTTTTATT AATATTTTCG CCTATTTAAA AATTCAATTA GAATAGTGTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01013 Mean Expected Number 0.009 -strand -20 : -29 CAAATGaAGA AC RSP01014 Mean Expected Number 0.001 -strand -20 : -29 CAAATGAAGA AC RSP01250 Mean Expected Number 0.003 +strand +29 : +38 AAAATTCAAT AC RSP01458 Mean Expected Number 0.004 +strand +24 : +36 ATTTAAAAATTcA Totally 4 motifs of 4 different REs have been found Description of REs found 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G26680 |PROD: the same as GENE |complement(11350879..11352480) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.42 C - 0.18 1 tttgaattcg tataattaat ttttagtttt aaaagtataa ataaaattgt 51 agaaatgaat tttgtgagaa taaatagttt tacttaattg gtgtcattaa 101 ttctagtaat gacacacttt tgtcagtttg tgtctctctg ctcactgaaa 151 ttgctaacct cggatcttct ttctccttgt ttttctttaa caagtcggta 201 CGAATCCATC TTTTCCCACC CAAGATCTCT CCTTCTTGTT TCCCCAGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.002 -strand -111 : -121 CAATTAAGTAA AC RSP00653 Mean Expected Number 0.008 +strand -34 : -24 TTCTtTCTCCT AC RSP00842 Mean Expected Number 0.001 +strand -42 : -35 CTCGGATC AC RSP01004 Mean Expected Number 0.010 +strand -119 : -110 ACTTAAtTGG AC RSP01339 Mean Expected Number 0.000 -strand -1 : -9 TACCGACTT Totally 5 motifs of 5 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1224. Group RE: DR1 /AC: RSP01339//OS: Arabidopsis thaliana /GENE: rd17/RE: DR1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: EMB1187 |LOCUS: AT2G26830 |PROD: choline/ethanolamine kinase family protein |11450639..11454184 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.18 T - 0.24 C - 0.12 1 atacatcgtg agagatagat tcaaacatcc ctaattccaa acttgtacgg 51 tatgtgttaa attaaaaact taaaacgact gatccctaat atcaaaatgc 101 cgacataaaa tataaatgga agcgttgaat tagggaaaaa aaacagaatc 151 aaaattaatt gagatctgat tacaaaaaaa aaaaaagaga atctttattt 201 GTATTTGCAG AAGAAGAAGA GAAAAAGTTT GAAAGAAAAT GGGAGCAGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.006 +strand -102 : -97 GCCGAC AC RSP01010 Mean Expected Number 0.001 +strand -103 : -95 TGCCGACAT AC RSP01031 Mean Expected Number 0.007 +strand -13 : -6 AGAATCTT AC RSP01776 Mean Expected Number 0.002 -strand +2 : -9 ACAAaTAAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: heat shock family protein |LOCUS: AT2G27140 |PROD: the same as GENE |complement(11605457..11606400) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.31 C - 0.14 1 ctatttttaa aatttcattt acttcacttt tttgagaatt ggaaaataaa 51 gttgtaaaaa tgcatataaa aaggaaagaa ctttatagaa aggaatcata 101 atagataggc aaagttaagg aataacCCAA Tatcaaagaa aacaacttag 151 aaaattcatc ttttctttgg tatataatga aatcgcttag atactctctt 201 GTATCAACAT ACACACAAAA TCCTCTTATT CTACATCAAA CCAAGAAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 -strand -168 : -177 AAAAAAGtGA AC RSP00862 Mean Expected Number 0.002 +strand -114 : -106 AGAAAGGAA AC RSP01210 Mean Expected Number 0.009 +strand -174 : -165 CTTTTTTGAG Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G27180 |PROD: the same as GENE |11627311..11628252 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +240 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.08 T - 0.37 C - 0.29 1 gaacatagaa aaacaaatct ctggttatat cttctccgat cttctcggtt 51 ccatttttaa cctctctgat tcagttattc tctctgacca aacgtttcca 101 aaattttctc tcattttctc gggaaaatta caaCCAATcc tagaaaattt 151 acacagctat tttttaactc atccaattca tcccctcctc ccctatttct 201 ACTTTACCAT CCACCAGTTC TTCTCAATCT TTCTCTTCCT GGGATCATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.007 -strand -152 : -158 ACCGAGA AC RSP00621 Mean Expected Number 0.005 +strand -19 : -11 CCCCTCCTC Totally 2 motifs of 2 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G27260 |PROD: the same as GENE |11676733..11677722 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.41 C - 0.18 1 gattctaatt attataattc tacaatttag atccattcga gtattttact 51 attttggttc ggattcgagt tcggttcttt ttactttggt tccaattcga 101 ttctttcggt tcgatttatt atgtccacgc ctagaatatc ttgataataa 151 taccatttac acaaaccgcg ttaagaaaga aaaacacgcg taagaaattt 201 ACATTTCCTT TTAAATTAAA TTGCGTTAAT TTCTCACTTC CCTTTACTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.009 -strand -45 : -52 ATGGTATT AC RSP00523 Mean Expected Number 0.002 +strand -17 : -11 ACACGCG AC RSP00860 Mean Expected Number 0.001 +strand -27 : -19 AGAAAGAAA AC RSP00985 Mean Expected Number 0.007 +strand -133 : -124 AGTTcGGTTC AC RSP01733 Mean Expected Number 0.009 +strand -35 : -30 CCGCGT Totally 5 motifs of 5 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G27285 |PROD: the same as GENE |complement(11683038..11685178) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +203 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.35 C - 0.24 1 ttgggaatga tctctgtgat ccagagcata tgacctcgat cgttttggtg 51 atgcatttta acttgtactc tagaacctca ttatctcggc ccatcaaaat 101 atgaaaacat tgggccgtaa caATTGGgcc gtaatcatct ataccatcta 151 tagttaattg gatcttttta tctcctccct tcctctttca ctttcttcca 201 TGGATTACTA AATTCCTTAA TCCTGGGAAA ATCACACCAA TCAACTTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.001 +strand -84 : -74 GTAACaATTGG Totally 1 motifs of 1 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT2G27330 |PROD: the same as GENE |complement(11702112..11703693) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.29 T - 0.27 C - 0.16 1 gtgtgggaac actcaccgga gatttcagca gctgagaatc cggaagaatg 51 tagcagaatc gacgattagg gttttgctct cagggagcga tgatgttttg 101 tttttttaca gtgtggttag aATTGCtgac gtggacttaa atttggttta 151 ttatatggta aatggaacgg aagaacaaca gcgagaataa agttcataga 201 GTGTGATTTC GCCGGCGGTG AGATCGCGGC AACAGCCACG GCTTCAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.006 +strand -74 : -67 TGACGTGG AC RSP00215 Mean Expected Number 0.006 -strand -67 : -74 CCACGTCA AC RSP00248 Mean Expected Number 0.005 -strand -66 : -75 tCCACGTCAG AC RSP00279 Mean Expected Number 0.002 +strand -135 : -127 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -127 : -135 AAACCCTAA AC RSP01275 Mean Expected Number 0.007 -strand -66 : -75 TCCACGTCAg AC RSP01303 Mean Expected Number 0.006 -strand -126 : -135 aAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: zinc finger (AN1-like) family protein |LOCUS: AT2G27580 |PROD: the same as GENE |complement(11783488..11784539) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +331 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.37 C - 0.21 1 gatttcaata ttattttttt gtcgtctcat gatttcaatt atcaagcaca 51 aaattgttaa aatgaatagt gtaggtgctt ctggaatctt caacgctagc 101 ccaaaagcca aataacacca ttttccacaa attgtCCAAT ttccatctta 151 cggccaacaa aaaaaagagt aaaataacaa tttaattttg tatcgattgc 201 GTCGTCGTTA GTTTTCCCAT TTCCTCATAA TTCTTCATCT CTTTCCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -40 : -31 AAAAAAGAGt AC RSP00862 Mean Expected Number 0.005 -strand +51 : +43 AGAAAGGAA AC RSP01012 Mean Expected Number 0.006 -strand -125 : -131 ACCTACA Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G27590 |PROD: the same as GENE |complement(11784714..11786928) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.25 C - 0.24 1 ttttaggtga taattaacca agtttttcta aaccatagta aaaaaaaaaa 51 aaaaaaaaac cccacatgat aaataccatc cgaaccacta aaaaccggta 101 tttgacccaa aaaaaacact aaaccgagaG CAATagggcc tacgtggcat 151 agtttagggc actcttcagt ctaaagacac actaaacaca aagtcaacgc 201 TTTTCTCTTC TTCCTCGACT GCTCTGCTCT GCTCTATTCT CTGGATTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -60 : -53 TACGTGGC AC RSP00247 Mean Expected Number 0.002 -strand -53 : -62 GCCACGTAgG AC RSP00260 Mean Expected Number 0.004 +strand -48 : -42 TTTAGGG AC RSP01034 Mean Expected Number 0.003 +strand -59 : -53 ACGTGGC AC RSP01259 Mean Expected Number 0.001 +strand -61 : -54 CTACGTGG AC RSP01602 Mean Expected Number 0.002 -strand +51 : +44 TCTCAATC AC RSP01719 Mean Expected Number 0.000 -strand -52 : -63 TGcCACGTAGGC Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1527. Group TF: STF1/HY5 /AC: RSP01719//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: G/A-box (2) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G27600 |PROD: the same as GENE |11788115..11791008 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.09 T - 0.35 C - 0.29 1 caaaccattt aatacaaaat tattggaaaa aataagcata tattaaaaaa 51 cggcaagcgt tttcgttatc attcatcaaa acattgagcc aattcttcac 101 aacttccaaa aacgcctcac cgtttcattc ttctaccaac ctacgctccg 151 ctgttttcaa gaccttttcg tcttcgtcgt caaatctagc ttttttcttc 201 ATCGCTTTGC ATAATCCATT CCTTCTTCTC TCTTCTCCAT CTCCTTCCTC 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G27730 |PROD: the same as GENE |complement(11826906..11828955) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1011 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.32 C - 0.23 1 cataataaaa tagaaactat tttgagcaaa ggcaagattc aaatcctaga 51 aaacttttta atgttcaata gctaaagtgt tcgtgaccac aaatgttcaa 101 cgcgcattca atgggctaaa atgattttag gcCCAATagt ttagtttaag 151 cccattttag ctccttccat atctcacacc ttcctcttca tttcttcttc 201 ACCGAGCCAT TTCTTCTGTA AGCGGATTTC ATCAGCATTC AGCAGCCAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand -199 : -191 ATAATAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G27775 |PROD: the same as GENE |complement(11849344..11850370) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.25 C - 0.18 1 taccaaaagc aaaattttaa ttttaaaaaa tgttaagagc caaggttaac 51 aaccaattgg agatggtcta agtccaaacc aaagaaaacc tttgccgctt 101 atcgaatttg tcccaaATTG Gaactaaacc gagcaattcc ggtttaatta 151 atgaaccggc atatccagtt tttcctaggg agggtttacg gagaggtttt 201 GGTGGATTCG CCAGAAGCAA AGAGGCAGAA TCGGAGAAAA TGGCTGCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.010 +strand -104 : -98 GCTTATC AC RSP00166 Mean Expected Number 0.001 +strand -110 : -103 TTTGCCGC Totally 2 motifs of 2 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: prephenate dehydratase family protein |LOCUS: AT2G27820 |PROD: the same as GENE |11863845..11865365 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.27 C - 0.20 1 tttgagatta ttaaaaaaaa aagtgagact attcaagaaa aatttggatt 51 gaaaaagata tgacatcgtt tgggcttatc tctcttggcc caccattacg 101 caaatggtgg taggtaggtg aagaacggtg agaggcacaa gatcattcca 151 cgctcttcct ctcttctcct ataacaacaa cactcttcac ttactcttaa 201 ACAAAACATT TCCATAACCA AAAAACCTCA AAATAAAAAA ATGAGAACTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.001 -strand -83 : -92 CCtACCTACC AC RSP00489 Mean Expected Number 0.003 -strand -85 : -94 TACCTACCAc AC RSP00651 Mean Expected Number 0.000 -strand -82 : -92 ACCTACCtACC AC RSP00826 Mean Expected Number 0.000 -strand -83 : -93 cCTACCTACCA AC RSP00863 Mean Expected Number 0.001 -strand -37 : -45 AGAGAGGAA AC RSP00941 Mean Expected Number 0.008 -strand -147 : -154 TTTCAATC AC RSP01453 Mean Expected Number 0.003 -strand -82 : -88 ACCTACC AC RSP01453 Mean Expected Number 0.003 -strand -86 : -92 ACCTACC AC RSP01594 Mean Expected Number 0.008 +strand -154 : -147 GATTGAAA Totally 9 motifs of 8 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 772. Group TF: R2R3-type MYB /AC: RSP00826//OS: Arabidopsis thaliana /GENE: F3H/RE: MRE-core (AtF3H) /TF: R2R3-type MYB 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CPN60A |LOCUS: AT2G28000 |PROD: RuBisCO subunit binding-protein alpha subunit |11933543..11936466 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.20 1 tattttaaaa cagagtgagt acattcagta agagaatgga taaaaacgaa 51 tttggaatac acaaactata aaagtttctt gagtactgtt tctattattg 101 ggccataaac agtgagacaa acaggcccat agaagtaggt gaaaaaggct 151 tattaagatc aacggttctc tcgttacgaa tgcaaagaat cttctggatc 201 CTTTTTCTCT CAGCTACTCT CTCCATTTAT CTAATAAACC CTAACCCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +44 : +36 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +36 : +44 AAACCCTAA AC RSP00654 Mean Expected Number 0.002 -strand -60 : -69 CACCtACTTC AC RSP00837 Mean Expected Number 0.003 +strand -45 : -36 AGATCaACGG AC RSP00996 Mean Expected Number 0.006 -strand -38 : -47 GTTGATCTTA AC RSP00297 Mean Expected Number 0.000 +strand -77 : +43 GGCCCA-- ** bp --ACCCTAA AC RSP01013 Mean Expected Number 0.005 -strand +29 : +20 tAAATGGAGA AC RSP01030 Mean Expected Number 0.007 -strand -122 : -129 AGAAACTT AC RSP01031 Mean Expected Number 0.008 +strand -15 : -8 AGAATCTT AC RSP01303 Mean Expected Number 0.006 +strand +35 : +44 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand +35 : +44 TaAACCCTAA Totally 11 motifs of 11 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glycosyltransferase family protein |LOCUS: AT2G28080 |PROD: the same as GENE |complement(11967648..11970370) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.36 C - 0.20 1 aggaacaaat cattaattta tattataaat caaaggagaa aaataaagaa 51 taaggaaaat gcatagaaat gccactaacc atccacttct atggctattt 101 ccgcgaaTCA ATgcaaagtc attcatttat tcccaacttg ccccatatgt 151 tttctttttc ttaatcacag attcttcttt tttattttta atccatagaa 201 CAAAAAAAAT ATAACCTTTA AATTTTCTCT CATTTCTTCA TCTTCCTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.006 +strand -89 : -83 TGCAAAG AC RSP00442 Mean Expected Number 0.006 -strand -80 : -89 TgACTTTGCA AC RSP00654 Mean Expected Number 0.009 +strand -121 : -112 CAtCCACTTC Totally 3 motifs of 3 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G28370 |PROD: the same as GENE |12138651..12140776 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +518 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.36 C - 0.14 1 ttagtaccca tattaatgta aaaagggaaa aaataaaaaa tatatgtggt 51 attgtttctt aaaaaaagat atattttaaa gtataattta ggaaaccaaa 101 aaaaatgtga acaaaagaaa atatagATTG Gtggttatat ttccccttaa 151 gaagtttaat tgacctctaa atttggttta atggttaatc tcttttcgtc 201 AAGCTATATT CTTCCTTTTG ATCAAAACAC CCACACCTCT TCTTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.010 -strand +20 : +14 CAAAAGG AC RSP00114 Mean Expected Number 0.003 +strand -9 : +1 CTTtTCGTCA AC RSP00727 Mean Expected Number 0.004 -strand +4 : -3 GCTTGAC AC RSP01017 Mean Expected Number 0.009 -strand -142 : -149 AGAAACAA AC RSP01221 Mean Expected Number 0.001 -strand -64 : -71 TAACCACC Totally 5 motifs of 5 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: Dof-type zinc finger domain-containing protein |LOCUS: AT2G28510 |PROD: the same as GENE |complement(12206175..12207842) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.37 C - 0.19 1 tttgcaaaaa aatctcgact taaatgtgaa tagtatcgtt ttttttctgt 51 cgtgaatagt atcatattaa tatatgtaaa acaacaacta gctacaaaac 101 aaatagaaaa TCAATttgaa ttataaataa aaatcatatt aaaaaggaca 151 cactttatct atatttgctt tatatattaa gaaccgtgct cttctcctct 201 ATTCATATTT GCTCACCTCA AACTCTCTCT TTCTCTCTCT CTCTCTGGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.005 -strand -147 : -152 CACGAC AC RSP00861 Mean Expected Number 0.004 -strand +34 : +26 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +46 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +44 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +42 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +40 : +32 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +47 : +31 cAGAGAGAGAGAGAGAA Totally 7 motifs of 4 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: beta-ketoacyl-CoA synthase family protein |LOCUS: AT2G28630 |PROD: the same as GENE |complement(12282396..12284322) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.07 T - 0.33 C - 0.26 1 atctcctaag tagaaaaaat caccttaaac ttgttatatc ttaccgtcaa 51 cgaaaattta ttaaaattcc ctttcttcaa aaatactatt aaaactcaat 101 ggttatgtag aacccactgg gaaattcaga gctggcgttt cctcatccat 151 tctcatatat tctcttatat aatccccttt acaatctcca cttcatttcc 201 ATGCATCTTA CTCACTTCAT CATCTCTTCT TAAACCCCAA AACAAACAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00349 Mean Expected Number 0.001 +strand -3 : +6 TCCATGCAT AC RSP00660 Mean Expected Number 0.005 +strand -95 : -89 TGTAGAA AC RSP00916 Mean Expected Number 0.007 -strand +21 : +12 GATGAAGTGA Totally 3 motifs of 3 different REs have been found Description of REs found 334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays, Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1) 632. Group RE: -300 box /AC: RSP00660//OS: Oryza sativa /GENE: Gt3/RE: -300 box /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: histone H2B, putative |LOCUS: AT2G28720 |PROD: the same as GENE |12334055..12334755 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.05 T - 0.29 C - 0.30 1 cataactcca cattagcaat ccgatgcctt ctccaacata aaagaaaaac 51 acttacttat catcatctat cagccgtaga ttaagatatt tagtatcctc 101 aatctaacaa acacaaaatc accacgtcaT CAATccttgt caaattctct 151 catccaatca aatccattac ttcctcctta atatctttca ccgcttcatc 201 ATCTTCTTCA TCATCATCAA TCACAAAAAT CCAAATCCCA AAACTTTCCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.004 -strand -72 : -79 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -79 : -72 CCACGTCA AC RSP00459 Mean Expected Number 0.005 -strand -58 : -67 TTGACAAGGA AC RSP00892 Mean Expected Number 0.007 +strand -23 : -15 TTAATATCT AC RSP00913 Mean Expected Number 0.009 -strand -70 : -79 GATGACGTGG AC RSP00916 Mean Expected Number 0.009 -strand -70 : -79 GATGACGTGG AC RSP01065 Mean Expected Number 0.003 -strand -64 : -74 AGGATtGATGA AC RSP01167 Mean Expected Number 0.001 -strand -109 : -117 TAAATATCT AC RSP01275 Mean Expected Number 0.005 +strand -80 : -71 aCCACGTCAT Totally 9 motifs of 9 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: osmotin-like protein, putative |LOCUS: AT2G28790 |PROD: the same as GENE |complement(12361507..12362508) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.27 C - 0.30 1 cttttgactc atagaaatag aatccaatat tcatctcttt taaactgaca 51 ttaaagccct tcgcctcctt aaacccacat gctaaattca ttgcctaacc 101 acccaaaaca tccaaagggt attttcgtca ctccaaaaaa tgtatgcata 151 tcgaaaaata ctttagctta tatacacaca cgtcgcattg gcacaccttt 201 CACACCAAAA GCTACACAAT GGCTAAAACC TCTCTTCCTC TCGCCGCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.006 +strand -24 : -17 CACACGTC AC RSP01091 Mean Expected Number 0.007 +strand -184 : -174 ATAGAATCcAA AC RSP01092 Mean Expected Number 0.006 +strand -184 : -174 ATAGAATCcAA Totally 3 motifs of 3 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ALB3 |LOCUS: AT2G28800 |PROD: chloroplast membrane protein (ALBINO3) |complement(12363441..12366329) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.27 C - 0.21 1 gagattgatg gattggtaat taagcctatt aagttaagca ggcctgtttc 51 taaaatgggc cctaataagc ccaaactaca aaaagcaccg atatatccca 101 cgttagatac atgtccacgt ggactcctat gactggatgt aatctccacc 151 acgcgcgatc accagcttcg tctctcattt tcattttcca atttattttc 201 AAAAAAAGAT AAATCCAGAA AAAAATTTAC AAAATAAAAA AATAAAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.001 +strand -86 : -77 CCACGTGGaC AC RSP00153 Mean Expected Number 0.001 -strand -79 : -88 CCACGTGGaC AC RSP00280 Mean Expected Number 0.006 +strand -87 : -78 TCCACGTgGA AC RSP00280 Mean Expected Number 0.003 -strand -78 : -87 TCCACGTgGA AC RSP00595 Mean Expected Number 0.003 -strand -176 : -184 GCTTAATTA AC RSP00682 Mean Expected Number 0.001 +strand -87 : -78 tCCACGTGGA AC RSP00682 Mean Expected Number 0.001 -strand -78 : -87 tCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -86 : -79 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -79 : -86 CCACGTGG AC RSP00858 Mean Expected Number 0.005 +strand -186 : -179 GGTAATTA AC RSP01734 Mean Expected Number 0.009 +strand -87 : -81 TCCACGT AC RSP01734 Mean Expected Number 0.006 -strand -78 : -84 TCCACGT Totally 12 motifs of 7 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G28870 |PROD: the same as GENE |complement(12401333..12401992) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.34 C - 0.21 1 agagactaac cattttttac gaaaacctta ctattataat aaagcaatct 51 tacataaagt atagttgttg catcggatcc ttcaacatta attataaacc 101 cgaatgttcg caaataaaat atatttacat aaacACAATt catatttaca 151 cgtacatagt attactatta tataaagcaa attaagccac caaaagccat 201 AAAATTCTCT TTCTCACTCT CTCACTCTCT TTCTCTCTTC CTTCATATAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.008 -strand -46 : -52 GTACGTG AC RSP00428 Mean Expected Number 0.002 -strand -183 : -194 AAAAAAtGGTTA AC RSP00861 Mean Expected Number 0.004 -strand +34 : +26 AGAAAGAGA AC RSP00861 Mean Expected Number 0.004 -strand +14 : +6 AGAAAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G28900 |PROD: the same as GENE |complement(12421191..12422655) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.21 T - 0.32 C - 0.22 1 ttccattatt tacgtcggca agttagagct cacgtcggca agtgtcgttg 51 taaagagatc acgagacttg tgggttggat ttttggcatg gctctagcct 101 aggaggacaa tgtcgtcatt taactggctc attgcTCAAT acatatctcg 151 tcgtgggtcc ttgttaatct cttctccacc gttgaaccat agtttaaaat 201 ATCCACCGTT AAAAGCCCCT TTATATCCCA AGAAATAGGT GAACTTGTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.002 -strand +16 : +7 GCTTTTAACG AC RSP00897 Mean Expected Number 0.000 +strand -92 : -80 AATGtCGTCATTT AC RSP00940 Mean Expected Number 0.005 -strand -15 : -24 TTCaACGGTG AC RSP01704 Mean Expected Number 0.002 +strand -192 : -183 tTTACGTCGG Totally 4 motifs of 4 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 828. Group RE: PAL04 /AC: RSP00897//OS: Bean yellow dwarf virus (Mastrevirus) /GENE: Intergenic Region/RE: PAL04 /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1513. Group RE: ACGT3/DRE3 /AC: RSP01704//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT3/DRE3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CXIP4 |LOCUS: AT2G28910 |PROD: CAX-interacting protein 4 (CAXIP4) |complement(12422857..12424462) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +395 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.25 C - 0.25 1 aaaacacata ttaactactc agccaggccc agcccaaatc cctctcaacg 51 cagccaggcc cagccgaatt atgtgacaaa actaaaaatg atgaaataca 101 caaaatttgg aggatataaa tgtaaaataa caaaagctaa agggcggttc 151 caactatttc ccaatcttta taatataccc tcgagacttt ccaatctttc 201 CTTTTTGCCT CAGAGGCCAT TGGCGAAGAA CAAAGTTTGA ACCTTTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.009 +strand +29 : +38 AACAAAGTtT AC RSP00597 Mean Expected Number 0.005 -strand -186 : -197 GTTAATaTGTGT AC RSP00741 Mean Expected Number 0.001 -strand +47 : +36 AAAAGGTTcAAA Totally 3 motifs of 3 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: tropinone reductase |LOCUS: AT2G29320 |PROD: the same as GENE |12599225..12600763 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.35 C - 0.19 1 ttatcagact tctacttttg gaagacacta aaaagttgtt atctagccat 51 aagaaagttt tggccaaagg ttttgactac aaaatgtcat ttttgccggg 101 gccactaact tagatatttt tgtaatgttc tctcttacgg ctacataata 151 tttccaccac acatacaaaa acatactcca cacttatctg atccatattc 201 ATTGTATATA TAGTTTGTGG CATTTCTGGT ATATGGTCAC TAGAAAAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01202 Mean Expected Number 0.002 +strand -137 : -130 CCAAAGGT Totally 1 motifs of 1 different REs have been found Description of REs found 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SAG13 |LOCUS: AT2G29350 |PROD: tropinone reductase |12607991..12609633 |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.34 C - 0.17 1 ttatataaat tttaactacg ctcatgacac gtaaatggta gaccaatatg 51 tggtgctcta ttaactaagg ggtcttcatt attaattcat aaagactttc 101 tttactatac aagacttgtc aaaaggaaaa gtagtatttt cgtactacgt 151 ctacccctct cacggatatg tgtggtcgag cagtcattat cataatgtgg 201 AATTTTGAAT TGAGCGAGGT TTCAAAGTTC AAAACTATCA CAACTAGTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.004 +strand -175 : -166 GACACGTAaA AC RSP00070 Mean Expected Number 0.002 -strand -168 : -175 TACGTGTC AC RSP00501 Mean Expected Number 0.004 +strand -24 : -18 CGAGCAG AC RSP01035 Mean Expected Number 0.007 -strand -169 : -175 ACGTGTC AC RSP01086 Mean Expected Number 0.007 -strand -166 : -175 TTTACGTgTC AC RSP01261 Mean Expected Number 0.004 -strand -167 : -174 TTACGTGT AC RSP01600 Mean Expected Number 0.009 +strand +20 : +27 TTTCAAAG Totally 7 motifs of 7 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: tropinone reductase |LOCUS: AT2G29360 |PROD: the same as GENE |12610902..12612312 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.31 C - 0.21 1 ctaaaattca ggaaacctac attgctctca aacaatgaac atgtctcgat 51 ctcatgtagt tgggcctaac ccttaatcga ggcccatttg tttgattaac 101 ctaacaaata catgaaaagg cctttcttac actgtcatta tcattcattc 151 attatggatt tttctctacc agacattcag atctccaaga aaagatcttt 201 GGGTTCTGTG GTTCATAATC AGAAATGGCT AAGACAGGGG AAAGCTTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00295 Mean Expected Number 0.000 +strand -140 : -115 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -115 : -140 TGGGCC-- ** bp --GGCCCA AC RSP00778 Mean Expected Number 0.004 -strand -50 : -59 TGAATgAATG AC RSP01209 Mean Expected Number 0.008 -strand -7 : -16 CTTTTCTTGG Totally 4 motifs of 3 different REs have been found Description of REs found 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PCNA2 |LOCUS: AT2G29570 |PROD: proliferating cell nuclear antigen 2 (PCNA2) |complement(12656983..12658780) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.26 C - 0.23 1 tctttaatat tacagctgct gttgggccga atgtttgttt ggcccaattt 51 aaacccatga aataagaaag cttaaagtga tggtggtgta ctgaaataaA 101 CAATacggac tcacacagat gataattcat cgtcacacac aggcgggaac 151 aaaaataccc taaaatcgct aaatggcgcc acaaaatctc agcttataat 201 ATCACTTCCC GCTAACAATT GCAATCTCCT CCCAGAAATT TCAACAGCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.008 -strand -162 : -168 AACAAAC AC RSP00295 Mean Expected Number 0.000 +strand -178 : -155 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -155 : -178 TGGGCC-- ** bp --GGCCCA AC RSP00874 Mean Expected Number 0.009 +strand -131 : -121 GCTTAAAGTGa AC RSP00297 Mean Expected Number 0.000 +strand -160 : -38 GGCCCA-- ** bp --ACCCTAA Totally 5 motifs of 4 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: thioesterase family protein |LOCUS: AT2G29590 |PROD: the same as GENE |complement(12661533..12662525) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.21 T - 0.27 C - 0.10 1 gtgacgttag cagcaacgaa ttatctaact gaaagtgaga atgaatttga 51 tagttgaaaa aaatgctcgt atttatagta cagagaacga cggcgtaacg 101 atttgctaaa atggggcctt taaggcccat aaagtatctg aaatatgaat 151 tgagtaattt atttatttat ccaaaaaata aaaataaaat aagaattgaa 201 AGAAATTAGA AAGACGATGA TGGAGAAAAT TATGGAGTAT CTGCAATTGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00508 Mean Expected Number 0.003 -strand -135 : -146 GCATTTTTtTCA AC RSP00509 Mean Expected Number 0.001 -strand -124 : -135 TATAAATACgAG AC RSP00837 Mean Expected Number 0.004 +strand -117 : -108 AGAaCGACGG AC RSP00838 Mean Expected Number 0.009 -strand -108 : -113 CCGTCG AC RSP01296 Mean Expected Number 0.006 -strand -123 : -131 CTATAAATA AC RSP01301 Mean Expected Number 0.001 -strand -123 : -132 CTATAAATAC AC RSP01463 Mean Expected Number 0.003 +strand -44 : -32 ATTTATtTATTTA Totally 7 motifs of 7 different REs have been found Description of REs found 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: zinc finger (C2H2 type) family protein |LOCUS: AT2G29660 |PROD: the same as GENE |12685967..12687744 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +456 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.32 C - 0.16 1 ataccacaaa agtatgttat gagaagagct tgtggtttag tgacgaacta 51 aggtttcgtc aaaaaaattg tgtgacctaa aactccccta cctagttcaa 101 caccttatag aatgaactaa tttatctact ctcattccag tctaaataaa 151 tgaatttcgg ctccaaagtt tcataatata aaagaaaaaa ttatatatat 201 GGAGGGAAAA GGCATATATA ATAAACATCA TTCGAATTCG TTTTTTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00872 Mean Expected Number 0.006 +strand -132 : -123 TGTGTGACcT Totally 1 motifs of 1 different REs have been found Description of REs found 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATPH1 |LOCUS: AT2G29700 |PROD: |12704497..12705244 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.29 C - 0.22 1 gtaataattt gtttttcaaa aatcctacat acttttactt actttgtaat 51 ctcggtttga tattagtgaa ttcaggtggg gaattttttg actaaaccgg 101 tttaaccata tcggtttaat cttacctact ggacccaaca cctcttacgt 151 gaccccataa aacgcagaga gccagcataa tcgcgaccga cctcactgaa 201 CGAGCGACCA AAACGCAGAG TTTTGACAGC AATTGAGTGG ATACCGAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00247 Mean Expected Number 0.004 -strand -48 : -57 GtCACGTAAG AC RSP00421 Mean Expected Number 0.010 -strand -145 : -151 ACCGAGA AC RSP00734 Mean Expected Number 0.004 +strand +9 : +16 CAAAACGC Totally 3 motifs of 3 different REs have been found Description of REs found 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G29710 |PROD: the same as GENE |12705750..12707420 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.25 T - 0.31 C - 0.16 1 gagatgcagg acagtagctt tgtttggttg tggattttac ctactctatc 51 atctttatct gcctgccatt attggtttac agtcacctca acattaggta 101 ggacttaaga gcaacgtgta tcacatgtgg caaagttaac aggaggaagg 151 ttgctaactc cattctttgg tatgtagatt gatgtttttt atcaacagat 201 AACGAGGCTG TGGAGAAAAG AACCAAAGGT GACTGTTGTT AGAGATGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.008 -strand -63 : -72 TAACTTTGCc AC RSP00917 Mean Expected Number 0.001 -strand -109 : -118 GTTGAGGTGA AC RSP01202 Mean Expected Number 0.003 +strand +23 : +30 CCAAAGGT AC RSP01209 Mean Expected Number 0.010 +strand -183 : -174 CTTTGTTTGG AC RSP01469 Mean Expected Number 0.009 +strand -80 : -71 TCACATGTGg Totally 5 motifs of 5 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: monooxygenase family protein |LOCUS: AT2G29720 |PROD: the same as GENE |complement(12707478..12709418) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.30 C - 0.18 1 ataaaagacc aataggccaa aaattaaagg gcatatacac tttttctgag 51 ttataaattt gtagcctcaa ctcttaagga cccaacattg actcatatgc 101 taaatctaaa tatccccaag atacttttca acgacaactA TTGAtgttca 151 aaaataaaat aaggtctata taagtttagg caattttgtg actacaattt 201 AATATTGATT ATAGAAAAGT GAATCCACTT GACCTCCTCT TGGAACGCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.007 +strand +25 : +31 CCACTTG AC RSP00683 Mean Expected Number 0.002 -strand +33 : +24 GtCAAGTGGA AC RSP00778 Mean Expected Number 0.005 -strand -106 : -115 TGAGTCAATG AC RSP00880 Mean Expected Number 0.004 +strand -72 : -63 CAACGaCAAC AC RSP01621 Mean Expected Number 0.008 +strand -165 : -156 TACACTTTTt AC RSP01733 Mean Expected Number 0.008 -strand +50 : +45 CCGCGT Totally 6 motifs of 6 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G29730 |PROD: the same as GENE |12710614..12712258 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.29 C - 0.22 1 aatatataaa gtgactcagc caaaaacatg ttaactgaaa atcttgtata 51 aaatggagat tctctgataa catgttcaaa taactctcta ataaataatt 101 agaagctttc tttggttgtg gatcccactc taccatcttt atctgccggc 151 cattatcttc cctctcgtgc ttgctaaggg ccacctcaac attaggtaga 201 AGCAACACAT CAGTAATCAT CACATGTGAC AAAAGTCAAC ATTAAGGTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00132 Mean Expected Number 0.002 +strand -21 : -14 GCCACCTC AC RSP00211 Mean Expected Number 0.009 -strand -99 : -109 CTAATTaTTTA AC RSP00709 Mean Expected Number 0.009 -strand -100 : -108 TAATTATTT AC RSP00710 Mean Expected Number 0.002 -strand -100 : -112 TAATTATTTaTTA AC RSP00847 Mean Expected Number 0.008 +strand -20 : -11 CCACCTCAaC AC RSP00881 Mean Expected Number 0.004 -strand -78 : -87 ATCcACAACC AC RSP01013 Mean Expected Number 0.005 +strand -151 : -142 aAAATGGAGA AC RSP01209 Mean Expected Number 0.004 +strand -95 : -86 CTTTCTTTGG AC RSP01237 Mean Expected Number 0.009 -strand -190 : -199 CTtTATATAT AC RSP01469 Mean Expected Number 0.007 +strand +20 : +29 TCACATGTGa AC RSP01469 Mean Expected Number 0.009 -strand +29 : +20 TCACATGTGa Totally 11 motifs of 10 different REs have been found Description of REs found 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CYP5 |LOCUS: AT2G29960 |PROD: |complement(12776134..12777656) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.30 C - 0.18 1 attacctgaa taaattgtat aaagaaagca ttatgatttt gatattttct 51 caccataaaa ccaatactgt aaaaatgata caagttgttc tggataaaag 101 ggtccacatt aaatttaaaa agcccactaa gaagtCCAAT aacaactcca 151 gcgtatgtta gcattggatc gtcaaacata aacatttcct ttcttcaact 201 ACTACTCTGT TTTCACTTTT CGATTTGAGA AAAAAAAAAA CGATCACGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00663 Mean Expected Number 0.000 +strand -196 : -184 CCtGAATAAATTG AC RSP00862 Mean Expected Number 0.001 -strand -7 : -15 AGAAAGGAA AC RSP01601 Mean Expected Number 0.008 +strand +11 : +18 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 635. Group RE: SRD motif /AC: RSP00663//OS: Glycine max /GENE: VspB/RE: SRD motif /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G30000 |PROD: the same as GENE |complement(12810932..12812054) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +603 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.22 T - 0.38 C - 0.18 1 ccgggtctaa attgggtact attgattagg acatggttta attgatttga 51 ctgccggttt ggtttggagc aacttaaact aatctggtcc aataataatg 101 ggcttttact ttgggcttta aagattctgA TTGGacccac tttactaaac 151 tggaatctgg atgcttcgtt atttgtgtag aatccgaccc gattcgtttt 201 ATTGCTCTTT TTGCTTCGTC GTCGATCTTG GCGCTCTGGA AATTTCTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00837 Mean Expected Number 0.006 -strand +28 : +19 AGATCGACGa AC RSP01031 Mean Expected Number 0.005 -strand -73 : -80 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G30050 |PROD: the same as GENE |12831528..12833761 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1089 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.31 C - 0.25 1 taggcccata aagcgcatat tgcagtattt atggcccatg atggatctga 51 acttatagat cacttgcagt agccatggcc cattgatgga tctgaagttc 101 agaacttata gatcactcat ctccctccgg tttTCAATtt gacccacccg 151 gtttagtata cgaactccgg tttatataac tttgacccag atctaatttt 201 ATTTTAACCA GCAAATACAA AAAACTTCCG ATCCCCCTTA GCGTTTCCTT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: mitochondrial substrate carrier family protein |LOCUS: AT2G30160 |PROD: the same as GENE |12884915..12886726 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.29 C - 0.15 1 aacataatct aataagtttt tttggttagg ttcatatcgc ttaaattaaa 51 gtacgattta aaaaaaaaaa aaaagtaaaa aagtacgttt ttgttttggt 101 aaaaaacact aaagaggcaa aaacgtaaaa aggcaaaaaa tatattttta 151 cttggggaaa aagatgttaa agcccacaag acaaggcaga ggtttctccc 201 ATGCTTTGTC TTTAGTTTAA CCGCCGCATC CTCTCTCTCT GGTCGGAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -131 : -120 AAAAAGTAAAAA AC RSP00077 Mean Expected Number 0.001 +strand -176 : -168 GTTAGGTTC AC RSP00230 Mean Expected Number 0.008 -strand -169 : -178 AACCTAACCa AC RSP00864 Mean Expected Number 0.000 -strand +40 : +32 AGAGAGAGA AC RSP00891 Mean Expected Number 0.009 -strand -53 : -61 AAAATATAT AC RSP00985 Mean Expected Number 0.007 +strand -177 : -168 gGTTAGGTTC Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 76. Group RE: AC-III /AC: RSP00077//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-III /TF: unknown 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: KIS |LOCUS: AT2G30410 |PROD: tubulin folding cofactor A (KIESEL) |12966403..12967845 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +486 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.34 C - 0.09 1 gacataataa aacacaaaat atatacttaa attgtacgat ataaaagttt 51 gatttacata ttttatatct ataaaaaagg gtaaataaat gaaataaaac 101 tttttttttt ttttttgtca aagaaatgaa ataaaactca aattacattt 151 ttatgtcgta atgcgagcac acaagtgagt gcatatccag tattaagttt 201 TTTTTTTAAT AATTCAGAAT TGAAAGCAAA GGAAAAAGAA GAAATCGAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.007 +strand +25 : +34 AGCAAAGgAA AC RSP00559 Mean Expected Number 0.007 -strand -54 : -64 TGTAATTTgAG AC RSP01469 Mean Expected Number 0.006 -strand -23 : -32 TCACtTGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: lipase class 3 family protein |LOCUS: AT2G30550 |PROD: the same as GENE |13021925..13024230 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.35 C - 0.18 1 tgcttattgc ctttaagcat tgtgcaatca ctaccaaaca cactcaaaac 51 taaataaata taatttataa cttatcaaat aaaataaata ctatcaagtg 101 tgtatgaaat cgatgACAAT ttatttatta ccttattacc atttgtgtct 151 tgaagtacac gttaagctat ttttatgtgt tataaaggct tcttcgtcaa 201 CCAATTACGA AATCAAGCTT TTGAAGCTTC TCAACAATGG CGGCTATTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 -strand +45 : +39 AGCCGCC AC RSP00438 Mean Expected Number 0.002 +strand +39 : +44 GGCGGC AC RSP00807 Mean Expected Number 0.002 -strand +44 : +39 GCCGCC AC RSP01011 Mean Expected Number 0.000 -strand +45 : +37 AGCCGCCAT Totally 4 motifs of 4 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G30570 |PROD: the same as GENE |complement(13025520..13027271) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.26 T - 0.31 C - 0.12 1 cataggtgtt gttcgttctt tgggttgtta tatattgcaa tctggatgca 51 gtttattatg atgtatcagt agagaagaga gaaaaagatt gtgttggagg 101 gaaagagatg aaatatgaca cgtggagggc gtcgATTGGt ggagtatgga 151 tagaagcata tccaagttag atggcttgtg ttggttcgaa cagatttttt 201 ATCCACCACA TATTTATGTT TGATCCAAAA GCCAACACAA GCAAAGAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.006 +strand -84 : -75 GACACGTgGA AC RSP00093 Mean Expected Number 0.004 +strand -1 : +6 TATCCAC AC RSP00188 Mean Expected Number 0.004 -strand -75 : -84 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -84 : -75 GACACGTGGa AC RSP00314 Mean Expected Number 0.002 -strand -30 : -40 TCtAACTTGGA AC RSP00340 Mean Expected Number 0.005 -strand -75 : -84 TCCACGTGTC AC RSP00447 Mean Expected Number 0.005 +strand +40 : +49 AGCAAAGaAA AC RSP00524 Mean Expected Number 0.007 +strand -83 : -77 ACACGTG AC RSP00653 Mean Expected Number 0.008 -strand -118 : -128 TTCTCTCTtCT AC RSP00682 Mean Expected Number 0.001 +strand -84 : -75 GaCACGTGGA AC RSP00850 Mean Expected Number 0.010 +strand +31 : +36 GCCAAC AC RSP01035 Mean Expected Number 0.007 -strand -78 : -84 ACGTGTC AC RSP01255 Mean Expected Number 0.002 +strand -83 : -76 ACACGTGG AC RSP01274 Mean Expected Number 0.006 -strand -75 : -84 TCCACGTgTC Totally 14 motifs of 14 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: histone H1.2 |LOCUS: AT2G30620 |PROD: the same as GENE |13052008..13053588 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +429 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.06 T - 0.27 C - 0.26 1 ccttaaactc atccgatttc atcaaatcat agttcgttac actccttgat 51 tagtctagtt ttcaacgaac ataaccatta aaaaaaaaac cataagcatt 101 ctccaaaaaa ccaaaaatac cgtaatacta tcaaaacaaa ccatagtttt 151 gaccaacctt gcttcaatcc ccattttctc atcctacaca aaaccatttc 201 AATCGATTAA ACACTCAAAC AAAACCTTAC AGAATTATCT ACACAATGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.008 -strand -47 : -53 GGTCAAA AC RSP00402 Mean Expected Number 0.008 +strand -151 : -145 TTAGTCT AC RSP01109 Mean Expected Number 0.008 -strand +38 : +31 ATAATTCT Totally 3 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 384. Group TF: AP1-like leucine zipper TF /AC: RSP00402//OS: Nicotiana tabacum /GENE: RNP2/RE: AP1 /TF: AP1-like leucine zipper TF 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATCOQ3 |LOCUS: AT2G30920 |PROD: hexaprenyldihydroxybenzoate methyltransferase |complement(13164249..13167009) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.10 T - 0.37 C - 0.23 1 aatagaaacc ctcaactcta aattctcaat cgtgaaaatt agcgtataac 51 tttaacccta aaatctaaat ttctttttct ctaattgttt tactgattat 101 caTCAATcta aatttttaat atgccttact atagtttata ggcccatata 151 gtttaatatg tagcccgtta aaattacatc cttcgagaat tcgtcattcc 201 ACTTTTGCCC TCACTCACTT GTCTTCTTCA ATTTCGCCGA CGACGAATCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.009 +strand +36 : +41 GCCGAC AC RSP01303 Mean Expected Number 0.007 +strand -149 : -140 TtAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -149 : -140 TtAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G30930 |PROD: the same as GENE |13169517..13170473 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.32 C - 0.21 1 tataaaaact aatgatgcta ataaccaaaa tcaagagttg ataaaggaag 51 tcacgtttgg agattctgtc tatagtgttt cgctggaggc gttgaaacag 101 ccctctttaa cagctcactt cgtttcacat tcctaaattc ctcTCAATct 151 tcttcttact taacttatta tataagtctc tgtttctctc tgacaaaaat 201 ATTCCACCAC AAAAAAAAAT GGCTCAATTC TTAGAGAAGG CAACTTCGGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01602 Mean Expected Number 0.008 +strand -59 : -52 TCTCAATC Totally 1 motifs of 1 different REs have been found Description of REs found 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ASP1 |LOCUS: AT2G30970 |PROD: aspartate aminotransferase |13185926..13188984 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.31 C - 0.20 1 taactaccat aaacatgtaa gattctaaaa taaatataaa tgttttatta 51 ctagattcag gtgttggaag actaactaaa agggaaataa atcagacaca 101 tagagccaag caacatttat tactttttat agtatttatc attagagtaa 151 agcttatttt attaaaatca aaccttatct ctcacacaca cacagaccaa 201 GGCCATTTTC TAAGCAACTT GTGCGACTCT CCTTCGTCCT CATCTGCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -73 : -84 AAAAAGTAAtAA AC RSP00068 Mean Expected Number 0.004 +strand -106 : -97 GACACaTAGA AC RSP00109 Mean Expected Number 0.010 -strand -138 : -143 CACCTG AC RSP00792 Mean Expected Number 0.000 +strand -95 : -86 CCAAGCAACA AC RSP01031 Mean Expected Number 0.009 -strand -175 : -182 AGAATCTT AC RSP01080 Mean Expected Number 0.000 +strand +26 : +37 ACTCtCCTTCGT Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 107. Group RE: E-site /AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: E-site /TF: unknown ||Identical REs AC: RSP00309 RSP01147 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 998. Group TF: DcMYB1 /AC: RSP01080//OS: Daucus carota /GENE: DcPAL1/RE: box-L2 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G30980 |PROD: the same as GENE |complement(13189148..13193026) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.33 C - 0.17 1 gtgaatgtag taatctccac aataaattgc attatggtat tattacggag 51 ttatcagact tttcacttca ccaatcactg tgcttattaa ataatgacta 101 cttaataaac agattagtgt ttcATTGGag cgtaagaatc acgcgctaaa 151 cttacgcgtg ggtttcctct ttatctttaa aaattttctc aagtttagac 201 AGAACACCAG GTAATAGAGA GAGAACAAAA TAGTCTTTAC TCTTTCAGTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.009 +strand -167 : -160 ATGGTATT AC RSP00864 Mean Expected Number 0.001 +strand +16 : +24 AGAGAGAGA AC RSP01601 Mean Expected Number 0.010 +strand -140 : -133 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATP synthase protein I -related |LOCUS: AT2G31040 |PROD: the same as GENE |complement(13215983..13218162) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.11 T - 0.48 C - 0.14 1 ttaatttatt tttatttatt tatttatttt ttaattattg taagttaaga 51 ttccattttc gcatcttttt ttttccgaat ttcctttttt gtaacatttt 101 ctcaaatttt taatgaaatg tttgtttttt tggtgggaat atttaatgaa 151 aatatcacga agtccaaaat tgccacaagc tgagattttt attttatttt 201 GCATCATCAT CATCAATATC ATTCATCATC ATCAGACATC AGGTGCGTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00109 Mean Expected Number 0.006 -strand +45 : +40 CACCTG AC RSP00596 Mean Expected Number 0.005 +strand -29 : -24 GCCACA AC RSP00871 Mean Expected Number 0.002 +strand +42 : +51 GGTGcGTCAT Totally 3 motifs of 3 different REs have been found Description of REs found 107. Group RE: E-site /AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: E-site /TF: unknown ||Identical REs AC: RSP00309 RSP01147 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31090 |PROD: the same as GENE |13263215..13263788 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +144 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.34 C - 0.16 1 tctttctttt ttaactcata taaaaatcga tctttatttt acgtgaagaa 51 attattctct gattttatat gataaaaata gaaaaattag attcaatatc 101 tacattactt attctggaat ggtcatagtc ttaagtctta aatgcatgta 151 aataaatata tgaatagcga ttgtctacca aaaaaaaaag aaaaaaaagt 201 AAAACGATAC GGCAGATGCA CCTAACAACA ACGCGTCTCT CTCTTTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.005 +strand -196 : -185 TCTTTTTTAACT AC RSP00574 Mean Expected Number 0.008 -strand -85 : -92 CAGAATAA AC RSP00861 Mean Expected Number 0.001 -strand +48 : +40 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +44 : +36 AGAGAGAGA AC RSP01032 Mean Expected Number 0.004 -strand -84 : -93 CCAGAATAAG Totally 5 motifs of 5 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein, contains Pfam domain |LOCUS: AT2G31190 |PROD: the same as GENE |complement(13298303..13300839) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.32 C - 0.19 1 aagaaaagtc gtgtttcttt ttaagtgggc catatttgtt gccccttaac 51 tagtcgccgc gtatctatca atattgggcc ttaattaagc ccattagtga 101 atagtaacaa aaatcatttg ggcctcagaa gtagaaaagg aacgaagaaa 151 cgacgtcgtt gttaagataa tctctttgat tttgttttta gacggctcta 201 GGCGATTACT GTTGTGGTGG TTCACTCCAA CTCCGGCGAC TCTTAACGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.003 +strand -146 : -140 CGCCGCG AC RSP00176 Mean Expected Number 0.001 -strand +45 : +35 TAAGAGtCGCC AC RSP00595 Mean Expected Number 0.002 -strand -111 : -119 GCTTAATTA AC RSP00735 Mean Expected Number 0.006 +strand -92 : -85 AAAAATCA AC RSP00748 Mean Expected Number 0.001 +strand -102 : -91 GAATaGTAACAA Totally 5 motifs of 5 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ADF6 |LOCUS: AT2G31200 |PROD: actin-depolymerizing factor 6 (ADF6) |13301130..13302487 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.28 C - 0.20 1 ttgttactat tcactaatgg gcttaattaa ggcccaatat tgatagatac 51 gcggcgacta gttaaggggc aacaaatatg gcccacttaa aaagaaacac 101 gacttttctt atcgcgttgt tctaacgcca ccgaccgaac acttcttttt 151 cttctgcaat aaaccaaaaa aagttaaaaa ttcaaaaact taattactaa 201 GCAAAAGTGT GCACGAAGAA CAAAGCGACG CATCCGATTT TATTTGTTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.007 +strand -33 : -22 AAAAAGTtAAAA AC RSP00142 Mean Expected Number 0.001 -strand -145 : -151 CGCCGCG AC RSP00595 Mean Expected Number 0.002 +strand -180 : -172 GCTTAATTA AC RSP00741 Mean Expected Number 0.003 +strand -33 : -22 AAAAaGTTAAAA AC RSP00748 Mean Expected Number 0.001 -strand -189 : -200 GAATaGTAACAA AC RSP01209 Mean Expected Number 0.001 -strand -28 : -37 CTTTTTTTGG Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31305 |PROD: the same as GENE |13357499..13358541 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +487 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.38 C - 0.15 1 ttctatatat tcagttttcg aatcccaaat aagttaacat tatagttttc 51 tcaaaattaa ttacactgta ttagtctttt ttctaatata tatattaaca 101 tttcttagaa aataaatata aaattagacc gaattttttt tttttttttt 151 tttttggttg gagcgactaa atttctccat cggcgaaaga aaaaaaaaac 201 AAAACGAAAA AAAAAAAAAG TTTCTCGATT CAACAAGCGT CCCTTCCTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.007 +strand -177 : -168 CCcAAATAAG Totally 1 motifs of 1 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: endonuclease-related |LOCUS: AT2G31450 |PROD: the same as GENE |complement(13408209..13411254) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.39 C - 0.08 1 attaatatat ctgttttgat taaaatatta atatattttt tttttagaaa 51 ctttccttat ttttattgag gagatggtct taacatttaa aaaaaaaaaa 101 aaaaaaaaaa acgttttgtg gttTCAATtt atgggggaga aaacgatttc 151 aattcatata atttgatgaa gctttaataa taacaatgtt gcaaattaat 201 ATATTTTCGG CAAAATAAAA AACAAATGTT GCAATTTCCT TGAATGATTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31490 |PROD: the same as GENE |13419060..13420323 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.28 C - 0.16 1 aaaggttagt caaaaactgt tggaaaagct aatctttttt taacaaaaat 51 agtaaaatac tcatatacgt aactttgggc ctttcttaaa tggctttggg 101 cctttcgtaa atgggcttat gggcttaagt acttcaaatc tgatagtatt 151 tggtttattg caacaaaaac aataaatgga aatagcgatc tgagctgacc 201 AACCACAGTC GCGGACAGAG CTAAAACCAC CATTTGAAGA AGGAGAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.004 +strand -161 : -146 TTAaCAAAAATAGTAA AC RSP00085 Mean Expected Number 0.004 -strand -146 : -161 TTACTATTTTTGtTAA AC RSP01454 Mean Expected Number 0.008 +strand -3 : +4 ACCAACC Totally 3 motifs of 2 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: Ras-related GTP-binding protein, putative |LOCUS: AT2G31680 |PROD: the same as GENE |complement(13480671..13482129) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.33 C - 0.25 1 aaatactcat tttagaccaa ccgcactcta gaggcctcag ctacttaaac 51 gctgatgaat tatgggctgt tttgggctta atatacaata ttttggccca 101 ttagtttttg acacgacaag aacttataAT TGCaccgaat tacatggcac 151 ataattcaaa acaaataatt aaaaccactt catgcgcatt atgtcttctt 201 CTCTATCATT TCCTTTGCCA GCTCCATCTC TCTCTCTCTC TCTCTAAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.009 -strand -54 : -60 CCATGTA AC RSP00550 Mean Expected Number 0.007 -strand -43 : -53 TGaATTATGTG AC RSP00709 Mean Expected Number 0.006 -strand -30 : -38 TAATTATTT AC RSP00864 Mean Expected Number 0.004 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +35 : +27 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +44 : +28 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +42 : +26 GAGAGAGAGAGAGAGAt Totally 11 motifs of 5 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31710 |PROD: the same as GENE |complement(13488870..13490182) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +210 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.23 T - 0.30 C - 0.18 1 cacgttcatt tactctgcca ggtagtggaa aacaacgtgt agtcggtatg 51 ctctggttag aaaacggcac gtagtttctt cgaacttgaa ccgaataaat 101 ataccggctt atgccggATT GAaatgtggt tttagtatat ctttctggtt 151 taataatggc ttccttgtga ttttgattga caagggaaac tctgtagaga 201 AAAGAAAAAA TCTCGACTTC GCAAATTGCG AGAGACATTG AGTCCAAGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.009 +strand +6 : +13 AAAAATCT AC RSP00941 Mean Expected Number 0.009 -strand -77 : -84 TTTCAATC AC RSP01594 Mean Expected Number 0.009 +strand -84 : -77 GATTGAAA AC RSP01640 Mean Expected Number 0.006 -strand +40 : +31 CaATGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G31725 |PROD: the same as GENE |complement(13493394..13494522) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.26 C - 0.19 1 ggcttcttgt aacaattgat tctaatgcga agtttaacgg accggtcaat 51 gaccggaatt agcttcctgt ttaataaagt ttgaattggt gaaaaagagt 101 taaccggttt agagaaaccc gggaaactta acccgaccca aaATTGTcaa 151 acccgttttg tttgcggcta ttgaaggatc ttctattgaa gagagcagct 201 AGCTAAAACC CTAAAGCCCT AAAATCAAAA TTACGCTAAA CAGAGAAGGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand -119 : -109 TGAATTgGTGA AC RSP00279 Mean Expected Number 0.002 -strand +14 : +6 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +6 : +14 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand +5 : +14 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G31750 |PROD: the same as GENE |13504310..13507763 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.34 C - 0.20 1 aaccctatat ctaaaatagt atccaccact aattttaaga atttacgatc 51 cttaggccat ttgtatgaat accttataat taaccaaatc actaacccac 101 caaccccttt taacttttct atttggtaaa gagacatata gaaacaaatc 151 ttttatatta aagttgccta taactactat tttctacgtt gcatacttgc 201 ATATATCCGA TAAATACTTC CGTCATAACA GAGTAAGAGT TTGTATGTAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00078 Mean Expected Number 0.000 +strand -104 : -93 CCACCAACCCCt AC RSP00079 Mean Expected Number 0.005 +strand -105 : -96 CCCACCaACC AC RSP00651 Mean Expected Number 0.003 +strand -106 : -96 ACCcACCAACC AC RSP00680 Mean Expected Number 0.007 +strand +26 : +35 TAACAGAGTa AC RSP00940 Mean Expected Number 0.002 +strand -19 : -10 TTCTACGtTG AC RSP00950 Mean Expected Number 0.002 +strand -105 : -95 CcCACCAACCC AC RSP01017 Mean Expected Number 0.010 +strand -61 : -54 AGAAACAA AC RSP01640 Mean Expected Number 0.002 -strand -62 : -71 aTATGTCTCT Totally 8 motifs of 8 different REs have been found Description of REs found 77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: integral membrane transporter family protein |LOCUS: AT2G32040 |PROD: the same as GENE |13642187..13644907 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +6 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.29 C - 0.13 1 ctcaaaatta tttaaaatat aaggttcaat acatattttg tcaataaaaa 51 tttaataagc tgctaatata gttcatgaga aaaatcaaaa attaatttaT 101 CAATcgaaaa aaaagacgaa gaaaaattaa tttatctacg tagcgcaaga 151 gacggagtgt tgtttattta aagaaaagaa agaaaaaaaa aagaacgaat 201 ATTAAAATGG CGAGTCGCTC TCTTTTCTCT ATCTCAATCT CACCTTCTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.001 +strand -66 : -57 TCtACGTAGC AC RSP00445 Mean Expected Number 0.005 -strand +28 : +19 AgAAAAGAGA AC RSP00488 Mean Expected Number 0.001 +strand -65 : -56 CTACGTAGCg AC RSP00615 Mean Expected Number 0.010 +strand +39 : +44 CTCACC AC RSP01576 Mean Expected Number 0.009 -strand -43 : -48 ACTCCG AC RSP01602 Mean Expected Number 0.003 +strand +32 : +39 TCTCAATC Totally 6 motifs of 6 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 1405. Group RE: ICEr2 /AC: RSP01576//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr2 /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G32090 |PROD: the same as GENE |13651472..13652906 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.38 C - 0.16 1 ggaccggatg ttttaaaccg gatacattgt ttggtcgggg tccgaacatt 51 tctgattggt cggatattca gattaagcaa cagattaatt tttcttggag 101 taactGCAAT tacgtataat aattcttttt tttaaagttg gttttagttt 151 cactgatagt caaaccgatc ggttcaacct tatggtttga ttaaagatgt 201 GTTATAAGGA GCCGATGCCA CGTACTTTTA CTAATCTCTT TTTTGTCGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand +24 : +17 TACGTGGC AC RSP00051 Mean Expected Number 0.002 +strand +17 : +26 GCCACGTACt AC RSP00055 Mean Expected Number 0.006 -strand -75 : -86 AGAATTATTAtA AC RSP00064 Mean Expected Number 0.002 -strand +26 : +17 AGTACGTGGC AC RSP00072 Mean Expected Number 0.005 -strand +25 : +19 GTACGTG AC RSP00075 Mean Expected Number 0.001 -strand +25 : +16 GTACGTGGCa AC RSP00431 Mean Expected Number 0.010 -strand -90 : -101 AATtGCAGTTAC AC RSP00445 Mean Expected Number 0.003 -strand +44 : +35 AAAAAAGAGA AC RSP00821 Mean Expected Number 0.001 +strand +17 : +26 GCCACGTaCT AC RSP00910 Mean Expected Number 0.000 +strand +14 : +26 GATGCCACGTACt AC RSP01034 Mean Expected Number 0.004 -strand +23 : +17 ACGTGGC AC RSP01276 Mean Expected Number 0.001 -strand +25 : +18 GTACGTGG AC RSP01509 Mean Expected Number 0.002 -strand -141 : -149 ACCAATCAG Totally 13 motifs of 13 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 841. Group RE: A1 /Group TF: HvABI5 /AC: RSP00910//OS: Hordeum vulgare /GENE: HvABI5/RE: A1 /TF: HvABI5 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: membrane-associated zinc metalloprotease, putative |LOCUS: AT2G32480 |PROD: the same as GENE |complement(13795594..13797150) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.28 C - 0.25 1 tatatttggg ccctaaagtt caataacaaa atcgatgctg acattattgt 51 atgtaacaag gcccatagac aataattcaa aaatactcgc aaagagatta 101 gtgttgtgtt gaATTGAatc acatccacat acacccaaaa aaagccaaat 151 cacgactctg tttactcatt attatcttcc tctctatcat caatggctcc 201 AATCGTACCA CTTCACCGTA GTACTCCAAA ATCTCCACTT CTCACGAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.007 +strand +34 : +43 TCCACtTCTC AC RSP00680 Mean Expected Number 0.006 -strand -38 : -47 aAACAGAGTC AC RSP00863 Mean Expected Number 0.002 -strand -16 : -24 AGAGAGGAA AC RSP00940 Mean Expected Number 0.008 -strand +23 : +14 TaCTACGGTG AC RSP01209 Mean Expected Number 0.001 -strand -57 : -66 CTTTTTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: dienelactone hydrolase family protein |LOCUS: AT2G32520 |PROD: the same as GENE |complement(13812596..13814613) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.32 C - 0.22 1 tattatcgtc gtcgcaaata caaatacaaa tacaaaaaag gacttgatta 51 tttgggccta atggcccata tatttttaaa aatataccgg gcccagattc 101 acactcacag atacgtcgtc gtttttgtgt cgtttggggt tgactctgaa 151 gaatttcttt cctcacaaga cacaaaaaca atgttaagta cactagtgtc 201 ATCCTCATCC AGATTCTTCT CTTCTTCAAT CGGAAAAACT TCTTCGCTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.007 -strand -125 : -133 AAAATATAT Totally 1 motifs of 1 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: F-box family protein |LOCUS: AT2G32560 |PROD: the same as GENE |13831871..13834063 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.24 T - 0.24 C - 0.15 1 aagttccaaa acaagagaga gagagagaga gagagagaga gagagagaga 51 gagagagaga gagagagaga gagagagaga gagagagaga gataaagaat 101 attttattgt gtccatgagt tggttaggtg atcctCCAAT tccaattggc 151 tatccatcta tcctcttctt ttatttatac tctcagaaac aagaaatcaa 201 AAAGGCAGCA CAATAATACT GTCTAAATGC TTCTCTACTT TCTCATCACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.001 -strand -51 : -60 GCCAAtTGGA AC RSP00864 Mean Expected Number 0.006 +strand -187 : -179 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -185 : -177 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -183 : -175 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -181 : -173 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -179 : -171 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -177 : -169 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -175 : -167 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -173 : -165 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -171 : -163 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -169 : -161 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -167 : -159 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -165 : -157 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -163 : -155 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -161 : -153 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -159 : -151 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -157 : -149 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -155 : -147 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -153 : -145 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -151 : -143 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -149 : -141 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -147 : -139 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -145 : -137 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -143 : -135 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -141 : -133 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -139 : -131 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -137 : -129 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -135 : -127 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -133 : -125 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -131 : -123 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -129 : -121 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -127 : -119 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -125 : -117 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -123 : -115 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -121 : -113 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -119 : -111 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 +strand -117 : -109 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 +strand -186 : -170 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -184 : -168 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -182 : -166 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -180 : -164 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -178 : -162 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -176 : -160 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -174 : -158 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -172 : -156 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -170 : -154 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -168 : -152 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -166 : -150 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -164 : -148 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -162 : -146 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -160 : -144 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -158 : -142 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -156 : -140 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -154 : -138 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -152 : -136 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -150 : -134 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -148 : -132 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -146 : -130 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -144 : -128 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -142 : -126 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -140 : -124 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -138 : -122 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -136 : -120 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -134 : -118 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -132 : -116 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -130 : -114 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -128 : -112 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -126 : -110 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand -124 : -108 GAGAGAGAGAGAGAGAt AC RSP01283 Mean Expected Number 0.000 +strand -122 : -106 GAGAGAGAGAGAGAtAA AC RSP01480 Mean Expected Number 0.007 +strand -101 : -94 TATTTTAT AC RSP01678 Mean Expected Number 0.002 -strand -92 : -103 CAATAAAATATT Totally 72 motifs of 5 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G32580 |PROD: the same as GENE |13834740..13836386 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 catcgcctaa cgttatctaa taagtagcac ttttgtaacg ctataaggag 51 gatcctcctt agacacatcc tcaatagtca atacataaag tcatagatat 101 gtctctacac agcttcggga ttcaacgtag ttagaaaatt agtatctgta 151 agtcaaaaac atcaccgagt aaaaagagtc cacccattaa ctcaagtctc 201 AACTTACACT TTGTTTTATT GGTCCCATAC CTAAGTATAG AAAACCATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.010 +strand -113 : -104 AaGTCATAGA AC RSP00441 Mean Expected Number 0.008 -strand +15 : +6 AACAAAGTGT AC RSP00635 Mean Expected Number 0.002 +strand +21 : +28 GGTCCCAT AC RSP00773 Mean Expected Number 0.004 -strand -7 : -16 TGAGTTAATG AC RSP01640 Mean Expected Number 0.004 +strand -104 : -95 aTATGTCTCT AC RSP01745 Mean Expected Number 0.000 -strand -117 : -129 GTaTTGACTATTG Totally 6 motifs of 6 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1552. Group TF: WRKY11 /AC: RSP01745//OS: Arabidopsis thaliana /GENE: At4CL4 (At3g21230)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G32650 |PROD: the same as GENE |13858139..13859157 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +485 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.32 C - 0.15 1 aaacagagat aaaacttgtg aagagaaaac tggaaagatt gtgcaatgtg 51 tcagagaatg tgacacgttt acagtcttac aaaacaaaaa cattttgggt 101 tacattaact caaaacaaac ttctgttcta aaattaaaac aaatctaaat 151 gttagtatcg tttctgtaat atttattata tcctcttctt cttttttact 201 GATTCATCAA ATCGGGGATC GGATAAGCCT GACTGCTTCA GGGTTTAAGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.003 -strand -130 : -139 TaAACGTGTC AC RSP00773 Mean Expected Number 0.003 -strand -89 : -98 TGAGTTAATG AC RSP01035 Mean Expected Number 0.007 -strand -133 : -139 ACGTGTC AC RSP01068 Mean Expected Number 0.009 +strand -142 : -134 TGTGACACG AC RSP01475 Mean Expected Number 0.001 -strand -103 : -111 CCAAAATGT Totally 5 motifs of 5 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: small ubiquitin-like modifier 5 (SUMO) |LOCUS: AT2G32765 |PROD: the same as GENE |13901939..13902659 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.31 C - 0.20 1 aatgagcctg ttgttgagtc agtacaattt tcaacgtact gttggaatac 51 gaaacgtgtg aactgtggag tgatgatgat tcaaaggcga gaaaacaaaa 101 gaccaccacc aagggtaaaa tgggaaacTC AATaagtaaa aatggaccaa 151 taggagtgtt tgacgaggat tgtactttaa tgttcgttca aagctctttt 201 AACTTTTCCC ATCATCTCTT TCTCACCTCC TCCTCTCTCT TTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -70 : -59 AAtAAGTAAAAA AC RSP00459 Mean Expected Number 0.005 +strand -41 : -32 TTGACGAGGA AC RSP00653 Mean Expected Number 0.002 +strand +41 : +51 TTCTCTCTCtT AC RSP00861 Mean Expected Number 0.002 -strand +44 : +36 AGAAAGAGA AC RSP00861 Mean Expected Number 0.002 -strand +23 : +15 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +50 : +42 AGAGAGAGA Totally 6 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protein kinase family protein |LOCUS: AT2G32850 |PROD: the same as GENE |complement(13942263..13945905) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +851 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.34 C - 0.20 1 tcatctctat atttgcaaca gaaattacct aaatgtatct cataacgttt 51 aaaatacaaa ctttatgata aaatgtacaa atgcgtcaac aaatgtgaaa 101 taatcaaata aaaataggtA TTGGgagggt cacggtccac gttcaggttc 151 acgtcttaat tttacggctt attatacaaa accataacca aaatgttctt 201 ATCTCACTTT CCTTTCTATT CCCGGATTTG CCGCTTTCTT CTTCTTCATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 +strand -69 : -62 ACGGTCCA AC RSP00166 Mean Expected Number 0.001 +strand +27 : +34 TTTGCCGC AC RSP00862 Mean Expected Number 0.003 -strand +17 : +9 AGAAAGGAA AC RSP01469 Mean Expected Number 0.007 -strand -103 : -112 TCACATtTGT AC RSP01475 Mean Expected Number 0.002 +strand -13 : -5 CCAAAATGT AC RSP01734 Mean Expected Number 0.010 +strand -65 : -59 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATP synthase gamma chain, mitochondrial (ATPC) |LOCUS: AT2G33040 |PROD: the same as GENE |complement(14025857..14028257) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.24 T - 0.25 C - 0.16 1 gaaagaagaa gtcatggtca aaactcaaaa atgtaaaagg aaacaagacg 51 tgtatgacga cgtgattgat aatctgagga gatacctttg ggccttataa 101 gatgggccga aaaagtaata gtattagcct ctattcggcc cgattaattt 151 caggggaaat tttggtaata aagtggaaac gacgtcgtga caaaactact 201 GTGTAGACTG AGAAATAAAG AAGCCCTTGA TTTTGCCCAT TGCAGTCATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01202 Mean Expected Number 0.002 -strand -110 : -117 CCAAAGGT AC RSP01604 Mean Expected Number 0.004 +strand -3 : +5 ACTGTGTA Totally 2 motifs of 2 different REs have been found Description of REs found 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SAR1 |LOCUS: AT2G33120 |PROD: |complement(14050536..14052620) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.37 C - 0.21 1 ctagcttatc caaattcatt ttcgctgata aaaatacgtt gaaactatca 51 aataacaaaa taccattaca ccaacatcac caacttttta aaaccccaca 101 agttgattat ttgaatttgc ttttaggtcc tcaagttcaa gATTGTttca 151 atttgcacaa tctgcataaa tctttctgaa atataacttt tttgccctct 201 AAAACTCAAG GGTTTGATTT TTCTTCTTCA ACTACGTTAA GATTTCTCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00354 Mean Expected Number 0.005 -strand +39 : +32 TAACGTAG AC RSP00508 Mean Expected Number 0.001 -strand -164 : -175 GtATTTTTATCA AC RSP00628 Mean Expected Number 0.004 -strand -54 : -61 AACAATCT Totally 3 motifs of 3 different REs have been found Description of REs found 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: IAA13 |LOCUS: AT2G33310 |PROD: |complement(14121358..14123164) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +330 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.29 C - 0.13 1 aatatagttt aataagatat gtttgttttg tttatcatat ttttttataa 51 acacaggaga aaacaataag gtaaacggga gcacgacaag tttgataatg 101 tcgggaagaa aagttaaaaa gaatttcttt gttaataata aaattaggga 151 ataaaaaaag ggtaaaagag aagaagaaag aatggcattg ttgttggtat 201 GGCCACTACC AGACATATGG GTCCTACTCT TCTCATCACT CTCTCCACCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.009 +strand -45 : -34 AAAAGGgTAAAA AC RSP01162 Mean Expected Number 0.001 +strand -86 : -74 TAaAAAGAATTTC Totally 2 motifs of 2 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 33 kDa secretory protein-related |LOCUS: AT2G33330 |PROD: the same as GENE |complement(14129967..14132214) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.05 T - 0.24 C - 0.28 1 atccacagcc tcttacaaaa tctctctctt tcaccattaa caccaaattc 51 agaaaactca gaagaagcaa aataaagagc ttttactgat ccaccaaaca 101 cagaatttca taaactccca aaaaagttaa attccaaaca agccccacaa 151 caacaacaac aacaaaaaag attttaatct ttctcattta cccatatcct 201 CAAAATTCCC ACAAAAATCT TTCCTCCAAT AACATAACAA AACAACTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand -172 : -180 AGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L23 (RPL23B) |LOCUS: AT2G33370 |PROD: the same as GENE |complement(14150646..14151797) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.36 C - 0.15 1 ctttcgtctt gttattcagt ttggggattt gtataattaa tgtgtttgta 51 aactatgttt caaagttata taaataagag aagatgttac aaaaaaaaaa 101 aaaagactaa taagaagaat ttggtATTGT tcatttcatg attaaaatgg 151 ttcatgggct atcatgggcc taaaaggcct tttccatagg tttaaaccct 201 AATCCTTTCT TCTCCTTCAT TTTTCTACTT CGATCAGACG CCAAACATCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +2 : -7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -7 : +2 AAACCCTAA AC RSP00442 Mean Expected Number 0.010 -strand -133 : -142 TAACTTTGaA AC RSP01303 Mean Expected Number 0.003 +strand -8 : +2 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -8 : +2 TaAACCCTAA AC RSP01600 Mean Expected Number 0.010 +strand -143 : -136 TTTCAAAG AC RSP01692 Mean Expected Number 0.005 +strand +29 : +36 TTCGATCA Totally 7 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: plastid developmental protein DAG, putative |LOCUS: AT2G33430 |PROD: the same as GENE |14169766..14172118 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.33 C - 0.18 1 ggaaaatatt cgttaattct ttaattagat gtgttcagaa atagaaagtc 51 tttatttgtt taagaaattg taacaagttc ttgcgatgat gaaaagaatg 101 agatttaatg ggctttgagc ccaactcatg taaagccttt atagtatata 151 agaagataaa aattcgaaga taaaaaccaa aaccctatcc actttactct 201 AAACCTCCAT TACCTTCGTC TTTCTTCCTC AGTCGCCCTA CAATGGCTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.010 +strand -148 : -138 TATTTGtTTAA AC RSP00535 Mean Expected Number 0.002 +strand -66 : -51 GCCT-- +6 bp --TATATA AC RSP01104 Mean Expected Number 0.003 +strand +1 : +8 AAACCTCC AC RSP01776 Mean Expected Number 0.010 -strand -142 : -152 ACAAaTAAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glycolipid transfer protein-related |LOCUS: AT2G33470 |PROD: the same as GENE |complement(14183492..14185640) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +614 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.33 C - 0.17 1 ataaagcctt gtttggtttc aaattttatc cacttgagaa tctcatatat 51 caagatgaaa cacctacaac aacaaatgta acttcatatg tcaggaccgg 101 tccgcaggac aagcatgtaa taaaactgtg tgttttctac attttctatg 151 aaatgggtgt aattgaaaga tactaaatgt tagggctttt cagaaacttc 201 CGTTACGTTT TAGGCGTTTA ACACAATTAT TATTTTCTAA AACGAGAGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.007 +strand -171 : -165 CCACTTG AC RSP00572 Mean Expected Number 0.009 +strand -115 : -108 ATATGTCA AC RSP00654 Mean Expected Number 0.003 -strand -42 : -51 CACCCAtTTC AC RSP00953 Mean Expected Number 0.006 +strand +24 : +32 CAATTATTA AC RSP01030 Mean Expected Number 0.009 +strand -9 : -2 AGAAACTT AC RSP01033 Mean Expected Number 0.005 +strand -194 : -185 CCTTGTTTGG AC RSP01735 Mean Expected Number 0.002 -strand -158 : -166 AGATTCTCA Totally 7 motifs of 7 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: spindle checkpoint protein-related |LOCUS: AT2G33560 |PROD: the same as GENE |complement(14220680..14223075) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.36 C - 0.20 1 atgaagtgta ttctgtcatt tcttttacta ttttactttc gctcattgtc 51 atttttcttc tcttatcgat tatttgtagt aggagtatac acaattcggt 101 ttagatggcc acttaatggg tttaagaaat caaatcatgg cccatctaag 151 ttaggcccat caaaagcgtc tatacgctcc gagtatgcgt acatcaaagc 201 AAAAAGTTGC GAAGCTCTCT CATTGAGTAA ACTAACGGCT ATATTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.003 +strand -8 : +2 AtCAAAGCAA AC RSP00857 Mean Expected Number 0.005 -strand -93 : -102 CCATCTaAAC Totally 2 motifs of 2 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G33570 |PROD: the same as GENE |14224299..14226324 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.27 C - 0.30 1 ttacgccaac ttgcccaaag gaccatgtgt ccccaccatg ctgccaattg 51 ggagccagca atacataaaa cagacttgat ccaacttttt acaagttaga 101 tgcagtgtct ttttcgtaaa tcataataga tccaagccca ttctcgtata 151 acctccacca catcactcct catatcatat gtgagacagc cacgagtctt 201 CTAATTTCTA CACGCCGTGT CGGCAAAGCC TCTCGTCACT TCTCTCTGAC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: cinnamoyl-CoA reductase family |LOCUS: AT2G33590 |PROD: the same as GENE |14231344..14233678 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +354 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.21 T - 0.30 C - 0.16 1 tgatgtttgg gattgacaca tcatgcggct gttgtttctc cacgtaacat 51 ttggagaccc gctcaaatat attgtgggcc ggagaacatt gttttaccat 101 atagggccca tagactttga atatgtgtag gtaaataaaa tACAATctgt 151 ggaacaaaaa tggcaaaaat atttgaagtc agcaggattg gttaacaatt 201 TGAGCACAGA AATACATTTG GTAACATCTG AGCATATCAT TCATATCATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.010 -strand -138 : -143 AGCGGG AC RSP00189 Mean Expected Number 0.002 +strand -162 : -153 TCCACGTAaC AC RSP00377 Mean Expected Number 0.004 -strand -8 : -17 AACCAATCCt AC RSP01017 Mean Expected Number 0.006 -strand -162 : -169 AGAAACAA AC RSP01274 Mean Expected Number 0.002 +strand -162 : -153 TCCACGTAaC AC RSP01734 Mean Expected Number 0.006 +strand -162 : -156 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G33735 |PROD: the same as GENE |complement(14275345..14276517) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.24 T - 0.29 C - 0.16 1 tccgtcgaga tccgattacc gccgataatc tagtggtgag agacgaagcc 51 atcactgtgt atctcagccg tctctaaatg tttctggaag ctgcgaaatg 101 tcctttaact gtaataatgt aatagtttag gggtctaaaa cgaaATTGCa 151 taataataat aaaattttat ctgaagaagc ccacagtgac gagaggagga 201 AAATCGTAAA TTTGAGGAAG CTTGGAATCG TTTGTTTGCT CTGGAGAATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand -45 : -37 ATAATAAAA AC RSP01016 Mean Expected Number 0.006 -strand -116 : -123 AGAAACAT AC RSP01597 Mean Expected Number 0.001 -strand -17 : -27 GTGGGCtTCTT AC RSP01604 Mean Expected Number 0.005 +strand -147 : -140 ACTGTGTA Totally 4 motifs of 4 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ribosomal protein S5 family protein |LOCUS: AT2G33800 |PROD: the same as GENE |complement(14307848..14309506) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.33 C - 0.16 1 tttgatgtgg attactacta gttacttttg tatgggcttg aagaaacttc 51 attgggccac aaagagggag gagtgagcga agagcccaaa ttcaaacaaa 101 aggatatgag ggttcaaatg ttattataaa atatattgtg gCCAATttgt 151 aaagaaactt gataattact ttaaaagccc caacacaatt atctttacag 201 TTTTTACGAT CTGGTGCTGG ATAAGCCTTT TGCTTCATTC TCACTTCCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.002 -strand -23 : -32 GCTTTTAAAG AC RSP00891 Mean Expected Number 0.008 +strand -73 : -65 AAAATATAT AC RSP01030 Mean Expected Number 0.008 +strand -159 : -152 AGAAACTT AC RSP01030 Mean Expected Number 0.008 +strand -48 : -41 AGAAACTT AC RSP01465 Mean Expected Number 0.000 +strand -150 : -140 ATTGGGCCACA Totally 5 motifs of 4 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SPL3 |LOCUS: AT2G33810 |PROD: squamosa promoter-binding protein-like 3 (SPL3) |14312077..14313148 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +341 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.32 C - 0.23 1 aaacattaca caatgtaaat ttactgttca gtcttgcttt tccaatcact 51 acattagcac atattcttca catgtatttt ccactaatct cgcgacaaaa 101 tgttcacagt gtttctcagt ttctctctcT CAATattttc ttgtcaaaca 151 acatgcatat ttgaacccgc atggtgaaat agcatcggca ttaacatgat 201 CAACCACAAA ATAAACCGGG GTGGTGTCAT AGCATCGACA TTAACTTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand -71 : -79 AGAGAGAGA AC RSP01006 Mean Expected Number 0.001 -strand +25 : +19 ACCACCC AC RSP01469 Mean Expected Number 0.008 +strand -133 : -124 TCACATGTaT AC RSP01678 Mean Expected Number 0.004 -strand -58 : -69 CAAgAAAATATT Totally 4 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: DNA-binding protein-related |LOCUS: AT2G33845 |PROD: the same as GENE |14324771..14326465 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.34 C - 0.14 1 tccgtataaa aaatatgtaa aattgttttt aaatcttgtc gatatatgct 51 actaaaatgt attttttggt ttactttggt cttagattga cgtggctgcc 101 tcaaactgcc ttcattttcg ttcttttttt ttttagaaaa aaacaagaat 151 aaaaatagta ataatcccac taaaaagaat catcagaaga aaaaagactc 201 ATAAATCTAG GGCTTTCTTC TAGAGATCGA AGAAGAAGAG TTCACATAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -113 : -105 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 +strand -113 : -106 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -106 : -113 CCACGTCA AC RSP00248 Mean Expected Number 0.001 -strand -105 : -114 GCCACGTCAa AC RSP01034 Mean Expected Number 0.002 +strand -111 : -105 ACGTGGC Totally 5 motifs of 5 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: apoptosis inhibitory 5 (API5) family protein |LOCUS: AT2G34040 |PROD: the same as GENE |complement(14384817..14389548) |SUPPORT | 17 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +223 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.30 C - 0.19 1 tcctttccaa atcgataact gatgtcaagg tgaagaattc gaacaggtat 51 tttcctccaa aaacaaacat cgggggtgaa attttgaaga aacgtcaagt 101 tcagtggcat ttctaaagtt tcatatacat gaaccggcgt cgttttataa 151 gatttttgtc aaggacaata gattaagctc acggtcttct tcttcaagct 201 AAGGAAGGTC GTGAGAAAAG AAAAACACTT CTCAATCTTT CTACAGTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.008 +strand -124 : -114 TGAAATTtTGA AC RSP01086 Mean Expected Number 0.009 -strand -103 : -112 TTgACGTTTC AC RSP01602 Mean Expected Number 0.005 +strand +30 : +37 TCTCAATC Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G34050 |PROD: the same as GENE |complement(14389763..14391358) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.21 T - 0.30 C - 0.19 1 atatatgtaa atactaaaca gtactaggtg aagtccattg aacattggtt 51 tagtttagaa gtcaggtcga gtaatccgga aattttagac tctggaccag 101 cccattattA TTGGttcaga aaaagcgaaa ttactaaaat ccggtttgga 151 ccgtcgaacc aagttaccca cgaaatctcg agccggcttc gtttccggtt 201 AGGGTTCTAA ATCTGAGATT TCCAGAGAAC TGTGCATATC TTCATAGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.002 -strand -47 : -54 ACGGTCCA AC RSP01304 Mean Expected Number 0.003 -strand +8 : -2 aGAACCCTAA Totally 2 motifs of 2 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G34070 |PROD: the same as GENE |complement(14394505..14397309) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.35 C - 0.16 1 tacattaaat ttatctataa agattaattt attttttatt tctatttagg 51 acatttaatt tacatgtcct aaacaattgt tatttaggaa ccgtaaatgg 101 acagcctaaa tattcttgga tttcctaatg aatgatattt ttaacaaaaa 151 ttgaacccat ataaggccaa gaagctcttc acactacttt acctatgtat 201 ATATAAACTC GAATCCATCA CAAAGCCTAT TCAAGTTAAG AGAAAAGAAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G34160 |PROD: the same as GENE |14433282..14434462 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.27 C - 0.24 1 tctctaggcc caaaccaaac ccattgaaag cccataagct caacatcact 51 gatctatttc ttagtattgg gctaatatag tcatatgtca ccaaagtcca 101 aacaaagaaa aatcttcaag ccgacaaccc gatttccata accggataga 151 ccggattgtg ggtaaggagt ttatgcgggt tgacccgatt tcacaagcgt 201 ATCTGTCTTG TTTAATTTCG TTACTCGTCG TCGTCCCTTA ACTCGAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00572 Mean Expected Number 0.006 +strand -118 : -111 ATATGTCA AC RSP01209 Mean Expected Number 0.009 -strand -94 : -103 CTTTGTTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G34260 |PROD: the same as GENE |14472928..14475604 |SUPPORT | 14 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.25 C - 0.18 1 tggtgaagta acgtggatat cagaataggc aagaaaaaac caattataac 51 ttaataagaa aaagggtcct aatagcaaaa ttagaaaata gaggagccca 101 aaaccctagt caaaatagat ccgagggtct taATTGCaaa attaaaaaac 151 agaggatctc tcgaaaaacc ttaaacccta ctctcaagtc tcaattcggc 201 GCGACGGACT CTTTGTTCAC TTTTGTAATT AAGATTCTCT TGTAGTGTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.004 -strand +17 : +8 AACAAAGaGT AC RSP00459 Mean Expected Number 0.004 -strand -88 : -97 TTGACTAGGG AC RSP00749 Mean Expected Number 0.002 +strand +20 : +31 cTTTTGTAATTA AC RSP00749 Mean Expected Number 0.006 -strand -59 : -70 ATTTTGcAATTA AC RSP00842 Mean Expected Number 0.002 -strand -76 : -83 CTCGGATC AC RSP01031 Mean Expected Number 0.008 -strand +38 : +31 AGAATCTT AC RSP01621 Mean Expected Number 0.004 +strand +16 : +25 TtCACTTTTG AC RSP01734 Mean Expected Number 0.010 -strand -184 : -190 TCCACGT Totally 8 motifs of 7 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G34310 |PROD: the same as GENE |complement(14484820..14487041) |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.24 C - 0.19 1 tgggaatttt caatctaata ttagaagcct ataaatctag tgatgaacaa 51 aaaaaagttg taatgaaaaa aaaaacaata gtgatgaaca gtggattttt 101 ggaggcagac cgacacgttt aataaatggg ctcagcctta tctctaggct 151 tttgtgactg ttagtgtgac atttgatttt ccccaaaaca taaagacaaa 201 AAGGAGAGAA ACAACTCCAC CCACATCACA CAAACCAACA AACCCACAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.003 -strand -80 : -89 TaAACGTGTC AC RSP00654 Mean Expected Number 0.004 +strand +18 : +27 CACCCACaTC AC RSP00872 Mean Expected Number 0.004 +strand -38 : -29 aGTGTGACAT AC RSP00941 Mean Expected Number 0.005 +strand -193 : -186 TTTCAATC AC RSP01035 Mean Expected Number 0.010 -strand -83 : -89 ACGTGTC AC RSP01185 Mean Expected Number 0.002 +strand +35 : +46 CCAACAAACCCa AC RSP01594 Mean Expected Number 0.005 -strand -186 : -193 GATTGAAA Totally 7 motifs of 7 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G34340 |PROD: the same as GENE |complement(14495865..14496681) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.31 C - 0.23 1 gacacatata gataagatat gtccacatat cataaagtaa ttttgcttta 51 gcaaaccttc attattatat aatactaatc caagtgtaaa agtgtacaga 101 tatagaaagt aagcggggtc cgcacTCAAT gccatgatca tgatgacatc 151 atctgatctc ataaaacagt acaacacaaa accccaaaac aacttcttgt 201 GACTCTCTAC GTTTCCTTCG TCTTCTTCTT CTTCTCTCTT CCCTATATAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.005 +strand -116 : -109 TGTAAAAG AC RSP00068 Mean Expected Number 0.005 -strand +15 : +6 GAaACGTAGA AC RSP00127 Mean Expected Number 0.004 +strand -89 : -84 AGCGGG AC RSP00868 Mean Expected Number 0.009 +strand -138 : -127 TATTATATaATA AC RSP00868 Mean Expected Number 0.010 -strand -127 : -138 TATTATATaATA AC RSP00870 Mean Expected Number 0.006 +strand -116 : -107 TGTAAAAGTG AC RSP01053 Mean Expected Number 0.002 +strand -190 : -182 GATAAGATA AC RSP01086 Mean Expected Number 0.008 +strand +6 : +15 TcTACGTTTC AC RSP01621 Mean Expected Number 0.007 -strand -105 : -114 TACACTTTTa Totally 9 motifs of 8 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: high mobility group (HMG1/2) family protein |LOCUS: AT2G34450 |PROD: the same as GENE |complement(14534815..14536571) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.25 C - 0.18 1 aggaagactg agagaagaag acagctgagg aatgtctgag aagcaaagat 51 gttgccatcg atgtgtaacc tctctgccac aaacgttaac ttttgttaaa 101 ttgtaaattt ttgatctttg ccttttttgt tgattagatt acgccacgtg 151 gcaaaggtct ccgacaatct gtttcagtac gcaattacgg aaaaacccca 201 AAGAGGCAGC GAACGAAAGT TCGATTCCGA GAAAGTGAGA GAAAATGACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.002 +strand -58 : -49 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.002 -strand -49 : -58 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -58 : -49 GCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -49 : -58 GCCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -57 : -48 CCACGTGGCa AC RSP00153 Mean Expected Number 0.003 -strand -50 : -59 CCACGTGGCg AC RSP00175 Mean Expected Number 0.002 +strand -56 : -49 CACGTGGC AC RSP00175 Mean Expected Number 0.002 -strand -51 : -58 CACGTGGC AC RSP00204 Mean Expected Number 0.003 +strand -58 : -49 GcCACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -49 : -58 GcCACGTGGC AC RSP00682 Mean Expected Number 0.003 +strand -58 : -49 GCCACGTGGc AC RSP00682 Mean Expected Number 0.002 -strand -49 : -58 GCCACGTGGc AC RSP00718 Mean Expected Number 0.002 +strand -57 : -50 CCACGTGG AC RSP00718 Mean Expected Number 0.002 -strand -50 : -57 CCACGTGG AC RSP01034 Mean Expected Number 0.009 +strand -55 : -49 ACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -52 : -58 ACGTGGC AC RSP01214 Mean Expected Number 0.005 -strand +6 : -4 CCTCTTTGGG Totally 17 motifs of 9 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: UREG |LOCUS: AT2G34470 |PROD: urease accessory protein (UREG) |complement(14537814..14539584) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.20 1 aacaaccatc gcttctttaa agtgaaagat tttaagtctt ggactgtgat 51 accaacttgg tgtcagttaa aatacgtttc ctctactgta attttgcctt 101 caaacactta acatatgaca ggggtattac agtcatttta tgctcccgac 151 agagaaagca tctcctttca cttaggatag aaaaatatag aaagattctt 201 ACATTAAAAA CTGTGCTTAA TGATCCCAGA ATCCCAGTAG TAGCTCTACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01031 Mean Expected Number 0.008 -strand -2 : -9 AGAATCTT AC RSP01601 Mean Expected Number 0.007 -strand -174 : -181 TTTCACTT Totally 2 motifs of 2 different REs have been found Description of REs found 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CYP710A2 |LOCUS: AT2G34490 |PROD: cytochrome P450 family protein |complement(14542724..14544511) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.31 C - 0.16 1 acatcaagtt ggttacacca accatatata ttttcacgta tgtatcagac 51 aaattactaa ttacagtgga aactgtatta acaatcatag cttttatata 101 tatagccttt atgtaatttt tggttttcat gttaaaataa gccaggccct 151 aagagagtgt cataccctta tatattgttt actgcatatt cacaaaactc 201 AAATACAGAG CAGAAACCTT TAAGAGAAGA TCTAATAAGA AAGAAGAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01454 Mean Expected Number 0.009 +strand -184 : -178 ACCAACC Totally 1 motifs of 1 different REs have been found Description of REs found 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: katanin, putative |LOCUS: AT2G34560 |PROD: the same as GENE |14567242..14569924 |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.32 C - 0.16 1 tagaaaaatt acaaaattaa atttaaaaaa aaacgagaca tttttcatgt 51 gaatccatac aaaaaacaag aatccatgga tctgatttgg aaatgtgttt 101 cctaGCAATt agaaataata ataataatta cagatttgtt tcttgattaa 151 caaatagttg tccaactgtg tagcacgtgc ctgttggttg atgtatgtaa 201 GCGAGAGAGC TGTTGTTGTT CAACTCTCGC CATCCATCAG ACATCTCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 +strand -131 : -123 GAATCCATG AC RSP00613 Mean Expected Number 0.007 -strand -54 : -61 ATCAAGAA AC RSP00749 Mean Expected Number 0.006 -strand -184 : -195 ATTTTGTAATTt AC RSP00966 Mean Expected Number 0.001 -strand -20 : -29 GGCACGTGcT AC RSP01017 Mean Expected Number 0.007 -strand -58 : -65 AGAAACAA AC RSP01604 Mean Expected Number 0.004 +strand -36 : -29 ACTGTGTA AC RSP01642 Mean Expected Number 0.005 -strand -158 : -167 AAATGTCTCg Totally 7 motifs of 7 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G34585 |PROD: the same as GENE |complement(14575126..14575716) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.31 C - 0.18 1 atattttcta tagataataa cttccatatt cacatacact actttttttc 51 ttcagaaaat gatcgtatta caacattgta caaaaccaaa aaccttctgg 101 aacattatta gttgataata acaaatcgta atagcggttt caccacttac 151 tcattttaca tcagaagaac ataaatcaat aaaaatacta atcattaggt 201 AACAAAATTG TCATAATTCG TGCCGACGAA AAAAGAATAT ACTCAAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.005 +strand +22 : +27 GCCGAC AC RSP00716 Mean Expected Number 0.007 +strand -120 : -112 CAAAACCAA Totally 2 motifs of 2 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: transketolase family protein |LOCUS: AT2G34590 |PROD: the same as GENE |complement(14575890..14578048) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.33 C - 0.23 1 ctttacagta ttactaattg ggccgagcag ttttgggctc ttgatcatgt 51 ctagtaatct taaacagacg ataaagttaa ctgcaattta gttggttcag 101 gtgagctacc aaatccaaaa atacgcagat taggttcacc gtaccggaac 151 aaaccggatt tatcaaaatc cttaagttat acgaaatcac gcttttcctt 201 CGATTTCTCC GCTCTTCTCC ACTCTTCTTC TCTGTTCTAT CGCAGACATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.005 -strand -65 : -74 AACCTAAtCT AC RSP00501 Mean Expected Number 0.004 +strand -177 : -171 CGAGCAG AC RSP01642 Mean Expected Number 0.004 -strand +51 : +42 AAATGTCTgC Totally 3 motifs of 3 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G35020 |PROD: the same as GENE |14763790..14767768 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.23 T - 0.29 C - 0.16 1 agaaaacaaa aatgtggtgt aatgagagga ggatacggta tgtggaaact 51 tgatttactt aatttcaaag gagacctacg gagtcaaaga gagagttaga 101 ccaactaatt gtccagaggg attgagATTG Gaggaagggt attatggtac 151 tttacgaata ctattacgtt gattaatttg gatactttgt cttcttcttc 201 GTCTCTCTCC CCTCGCGCAT CTTCGGTGCT ATAAAACAAA CTCACGACTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.010 +strand -139 : -132 ATTTCAAA AC RSP00865 Mean Expected Number 0.000 -strand +10 : +2 GGAGAGAGA AC RSP01600 Mean Expected Number 0.007 +strand -138 : -131 TTTCAAAG AC RSP01602 Mean Expected Number 0.008 -strand -74 : -81 TCTCAATC Totally 4 motifs of 4 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: phosphate-responsive 1 family protein |LOCUS: AT2G35150 |PROD: the same as GENE |complement(14824126..14825290) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.37 C - 0.20 1 ttacatttct ttatgtcatt tctagtcatt ttgatgcaaa ttgtaccatt 51 tatggattat cttcacaaat ttttaagttg gtgaaaactt tttggtgggt 101 agttaaaact tgaaatagaa atttacttta ccaaaataaa ctaatgaaaa 151 gtaatcactc cactccctat aataagattt ccaacgttcc cactaagcaa 201 ATCATAAACC CACCGAGACG ATGTCTCTCA TCATCGTCTT CTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.004 +strand +12 : +18 ACCGAGA AC RSP00489 Mean Expected Number 0.003 -strand -100 : -109 TACCcACCAA AC RSP01640 Mean Expected Number 0.008 +strand +19 : +28 CgATGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G35210 |PROD: the same as GENE |14843141..14845228 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +144 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.27 C - 0.20 1 aaaaccaata accagataca aaagggttaa ttacggagga aagaaaatta 51 cctctcgtag ttggggtaaa tgtaaaactg ggtcgttggg taataaacta 101 accacctctc gttaccgtta caaaataaaa cgcgcgagag aagagtaaaa 151 aggttataat agtcagttca tataccaacc tcaccttacg gctggatctt 201 AAGCAACCTC ATTTATAAAC CCCTCGATTT CTTGCGTTGT TTTCGAATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.003 -strand -176 : -186 CCTTTTGTaTC AC RSP00741 Mean Expected Number 0.003 +strand -53 : -42 AAAAGGTTAtAA AC RSP01221 Mean Expected Number 0.004 +strand -102 : -95 TAACCACC Totally 3 motifs of 3 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: GDCH |LOCUS: AT2G35370 |PROD: glycine cleavage system H protein 1 |14898181..14899297 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.29 C - 0.19 1 atgacggaga gtcgacttga gttttcaata ttttcatatc tgtccttaca 51 tatgttttta attccacttt taaccccaaa ggtttcagag agtataaaaa 101 actccaaaac ATTGGaaaag caattgtaag agcttctgcg tcaaaaagaa 151 ggtttgggtt acacttttca tacacaccat atgcatagga tgaggccttc 201 AATTTCTGCC TTACATATCA AAAGATAGAA CACACACACA AATAAAGCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.009 -strand -93 : -100 TTTGGAGT AC RSP00746 Mean Expected Number 0.001 -strand -122 : -133 tTGGGGTTAAAA AC RSP01202 Mean Expected Number 0.003 +strand -125 : -118 CCAAAGGT AC RSP01208 Mean Expected Number 0.001 -strand -86 : -97 CCAATGTTTTGG AC RSP01621 Mean Expected Number 0.007 +strand -41 : -32 TACACTTTTc AC RSP01761 Mean Expected Number 0.000 -strand -44 : -55 CCAAACCTTCTT Totally 6 motifs of 6 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G35470 |PROD: the same as GENE |complement(14916005..14916881) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.43 C - 0.16 1 cctctttctt ttaaatattt atatacatct ctcttttttt gtgaattttt 51 ttactagatt ccaaagtaaa tgagtagcga atacgacaac tctcgttatt 101 agacagagat atataataat cgcgtaataa ttatttccta tttaaatatg 151 ataaactcat gtgtgtgcat atttactttt tatttactta tgggatactc 201 ACCAATATTT ATTTGATACG AACCATAACC TTCACTAAGT TTTCTTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.007 -strand -162 : -171 AAAAAAGAGA AC RSP00710 Mean Expected Number 0.010 +strand -73 : -61 TAATTATTTCcTA AC RSP00747 Mean Expected Number 0.002 -strand -9 : -20 CATaAGTAAATA AC RSP00962 Mean Expected Number 0.005 +strand -130 : -124 TGAGTAG AC RSP01312 Mean Expected Number 0.000 +strand -73 : -59 TAATTATTTCCTAtT Totally 5 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 887. Group RE: GLM1 /AC: RSP00962//OS: Hordeum vulgare /GENE: ITR1/RE: GLM1 /TF: unknown 1205. Group RE: Regulatory Motif 2 /AC: RSP01312//OS: Glycine max /GENE: 11S A2B1a/RE: Regulatory Motif 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: plastid-lipid associated protein PAP, putative |LOCUS: AT2G35490 |PROD: the same as GENE |complement(14919223..14920956) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.34 C - 0.15 1 agttgaagat tatagccaaa ccagaagcaa aagcagccat tgatgattga 51 tttcaaactc actcactcag acaaagtatc actacgggga taagggaaag 101 agacgaatac aaatcgttat aatgggcctg ggtcaggccc attagtttaa 151 agtttttttt tttttgaagt tttaaaattg cgttttttct ggggtcatct 201 AAATTTCGTG TGATTTTCTA AGACTTGAGT AATCTTGTTT TCCGAAATTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: defender against cell death 2 (DAD2) |LOCUS: AT2G35520 |PROD: the same as GENE |14928572..14929920 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.21 T - 0.21 C - 0.21 1 tattgagccc tcgagtaacg tctaaagatt tttcgaacaa gctcgagtgg 51 tagtccattt acaaactgtg gaaaacataa tttagaaaat atctcataac 101 aaaacggcga cgtttcgaag ttcagactta aaaaggcttg ggcccaaagg 151 ccccaaacaa tgacagcccg ttttaatcag caaatcctga aacaacgtca 201 TTTCAGCGAG AGCACCAGAC TCGTGAAGAA GAGAAAAAGA AGAAGCAGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.003 -strand -168 : -175 AAAAATCT AC RSP01205 Mean Expected Number 0.009 -strand -65 : -74 CCTTTTTAAG Totally 2 motifs of 2 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SWIB complex BAF60b domain-containing protein |LOCUS: AT2G35605 |PROD: the same as GENE |14953143..14954355 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.29 C - 0.16 1 ttggatgaca tgatagaccg atgaatgcca ttgctttctt ttgacattta 51 taggcttcga attgttgttt tgtttatcaa ataaatccaa aaaggcccag 101 aatcttggtG CAATaggagg cccaaaacag gcccaaacta agaagagcta 151 aaccacagac cttcattaat ttttaaaggg ctgagagaaa gagagagact 201 GGGAAACGTT TCAGTTTTCA AAGTCTGTGA GTTTGATCTA GGGTTTTAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.003 +strand -15 : -7 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -11 : -3 AGAGAGAGA AC RSP00913 Mean Expected Number 0.005 +strand -197 : -188 GATGACATGa AC RSP00916 Mean Expected Number 0.005 +strand -197 : -188 GATGACaTGA AC RSP01031 Mean Expected Number 0.007 +strand -102 : -95 AGAATCTT AC RSP01032 Mean Expected Number 0.008 +strand -68 : -59 CCAAACTAAG AC RSP01033 Mean Expected Number 0.007 -strand -70 : -79 CCTGTTTTGG AC RSP01499 Mean Expected Number 0.008 -strand +5 : -5 TTCCCaGTCT AC RSP01600 Mean Expected Number 0.007 +strand +16 : +23 TTTCAAAG Totally 9 motifs of 9 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATCSLA07 |LOCUS: AT2G35650 |PROD: glycosyl transferase family 2 protein |14992567..14995436 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.29 C - 0.14 1 tgtcgtttct acagtttcta acgtggttca tgtcaagtag ttatcagttt 51 tttttttttt tttgccataa ccataattag atgatggata ccaccaacga 101 atcatttata ataataataa tttaaatgac aacaaagaat ttgaaaaata 151 ataaaataaa atagaaatga caacaaagaa ataagcccca cttggccgat 201 TGAAAGAAAA TATCCAGTTG ACTCCAAATA GACTAGAAAG AGAAAGAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.000 +strand -13 : -4 CCACtTGGCC AC RSP00307 Mean Expected Number 0.009 -strand -5 : -10 GCCAAG AC RSP00405 Mean Expected Number 0.006 -strand +28 : +21 TTTGGAGT AC RSP00522 Mean Expected Number 0.003 +strand -13 : -7 CCACTTG AC RSP00683 Mean Expected Number 0.001 -strand -5 : -14 GCCAAGTGGg AC RSP00861 Mean Expected Number 0.004 +strand +35 : +43 AGAAAGAGA Totally 6 motifs of 6 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SCPL26 |LOCUS: AT2G35780 |PROD: serine carboxypeptidase S10 family protein |complement(15044741..15047195) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.34 C - 0.24 1 ggtttcttat tggctcttcg aatcaaaaat agatgatgat acaatgtaac 51 ataggcaagg acaaagtcat cgttgtaaat aaagtcaatg atgtaagaaa 101 tacaaatata accgccattt attaatctca cttactctgt ccccaccatc 151 actcactgat tttattatca tcaaaaacat tgagatcttc acccttatca 201 TTTGATCCAA CCATGGCTCG ACTCCTTCTC CTCTTCTTCT TCTTCCTTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00627 Mean Expected Number 0.004 -strand +1 : -8 ATGATAAGG Totally 1 motifs of 1 different REs have been found Description of REs found 603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G35820 |PROD: the same as GENE |15057991..15059318 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.33 C - 0.19 1 ctagaatccc gaaaaggcaa aaaggtccct tgttttctct cttttttcat 51 gttaaacaca tactttttaa attaacaaga aagcccagat atttttggtg 101 ttttcttact gaatctagac ttgaagagaa ttttaggaaa actccaaaaa 151 gctcgtacgc taattcttat cttcacttcc atttttcctg tggtgatggt 201 GAGAGTTCAA GTGTTCCAAC GATGGCGAAA TCCCCGGTAG AGGTGAAACT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 -strand -28 : -36 AAGATAAGA AC RSP00405 Mean Expected Number 0.004 -strand -53 : -60 TTTGGAGT AC RSP00445 Mean Expected Number 0.001 -strand -154 : -163 AAAAAAGAGA AC RSP01168 Mean Expected Number 0.001 +strand -179 : -171 AAGGTCCCT AC RSP01214 Mean Expected Number 0.002 -strand -184 : -193 CCTTTTCGGG Totally 5 motifs of 5 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1080. Group RE: GC element /AC: RSP01168//OS: Vicia faba /GENE: LeB4/RE: GC element /TF: Uunknown TF 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: NHL12 |LOCUS: AT2G35960 |PROD: |15114019..15114966 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +210 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.38 C - 0.18 1 tttaagaata ctgatttatg tccactcctt tgtttcccct acaaatcata 51 tccatacata atgtatgcta catttgttac ataattgagt gaaaagttaa 101 aaactcattc atccgtatac atttactttc tccatgtaac tttttgaatg 151 caaactatca aattagaaat tgatcaacaa tcaaattaga aaatcacata 201 TTTGTGAAGT ATTGATTCAT TATTTTCTTA CGCCTAAGCT AACTGTAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.002 -strand -114 : -124 CAATTATGTAA AC RSP00431 Mean Expected Number 0.010 -strand +50 : +39 AATtACAGTTAG AC RSP00442 Mean Expected Number 0.007 -strand -102 : -111 TAACTTTtCA Totally 3 motifs of 3 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G36000 |PROD: the same as GENE |15124154..15125776 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.29 C - 0.22 1 accaatcatt ttccaagcat tgagacttcc attcttaaaa taagaatatg 51 aggcccaatg ggcttggcaa gaaagttaaa caaaaaaaag aagaagacaa 101 ttttacaatt ttgtcaagtt tTCAATtgaa ataaaccggt taaatcccaa 151 tttaaaccgg atcaatcaag atatggtaat ccccttctcc ttctccaaaa 201 ATCACAACTC TGTTCCAAGT CTTATCCTTT CATCATCATC ATCACTTACC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: abscisic acid-responsive HVA22 family protein |LOCUS: AT2G36020 |PROD: the same as GENE |complement(15130233..15132667) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +448 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.38 C - 0.18 1 tttttttgta aattcatatg aagcgtcgaa caatgttaaa taacgaggat 51 aatgagacaa cggtcaaacg gtcaaacggt aaacccgttc ctcttacccc 101 caaattcaag tagcttttgt ggcaagaaac cgtttacttt ttgtaatttt 151 tttgtttgtt tattgacgtt tatatatttc taaaaaaact aaaccctgat 201 GTATTCCAAT TTTAGAACTT ACGCGTCTTC ATAATCTTCC TCTTTTTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.009 +strand -139 : -133 GGTCAAA AC RSP00383 Mean Expected Number 0.009 +strand -131 : -125 GGTCAAA AC RSP00894 Mean Expected Number 0.007 +strand -98 : -91 AATTCAAG AC RSP00933 Mean Expected Number 0.010 +strand -61 : -49 TTTgTAATTTTTT Totally 4 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ubiquitin-conjugating enzyme family protein |LOCUS: AT2G36060 |PROD: the same as GENE |complement(15149876..15151261) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +184 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.26 C - 0.22 1 aacactctgc catgttttgc cagaggacat ggggttcttc cataaaccag 51 actcctcttg gcccatcaac atatccatgg cccatacaga gccttatcat 101 gtgaatgata aaataggttt ggggttattc ttgaaaatat cttaaattca 151 tggaaatata tgagagaaaa caaaaatatg ggtagcggaa aataaatagt 201 AGCCCACTCC AATTCTCGTC GCACCAATAG AGTAATTCAA CTGCCCCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00627 Mean Expected Number 0.001 -strand -101 : -109 ATGATAAGG AC RSP00683 Mean Expected Number 0.004 -strand -139 : -148 GCCAAGaGGA Totally 2 motifs of 2 different REs have been found Description of REs found 603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G36145 |PROD: the same as GENE |15175620..15176585 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 1 actgatccct tgatactatt gtagactggt ttttgtctaa gtcttgactc 51 tactttgatg gaaaaaaatg attgaaatac gttaaatcac tctctatttc 101 tttttgtaat ttgcctcgtt cataTCAATt caacggctta aaaaagaaca 151 cgtcatcaag attttcatgt ttcaactcat atcctctaaa aagctatctc 201 TCACTATGTG AAGGACGCGA CAGTAGGAAA ATGGCTTTCG CAGCGACGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.010 -strand +40 : +34 CGAAAGC AC RSP00916 Mean Expected Number 0.004 -strand -44 : -53 GATGACGTGT AC RSP00941 Mean Expected Number 0.006 -strand -124 : -131 TTTCAATC AC RSP00997 Mean Expected Number 0.004 -strand -44 : -53 GATGACGTGT AC RSP01210 Mean Expected Number 0.009 -strand -55 : -64 CTTTTTTAAG AC RSP01258 Mean Expected Number 0.003 -strand -46 : -53 TGACGTGT AC RSP01594 Mean Expected Number 0.006 +strand -131 : -124 GATTGAAA AC RSP01654 Mean Expected Number 0.007 -strand -44 : -53 GATGACGTGT AC RSP01757 Mean Expected Number 0.003 -strand -153 : -160 GTCAAGAC Totally 9 motifs of 9 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: BBM II II |LOCUS: AT2G36230 |PROD: |complement(15200779..15202617) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.29 C - 0.22 1 acggtggcgt aatcggcgcc ggaagatgat gagactttga gacgagactg 51 ataacgttct tcttgttcca tcgcatcact ctctgtttgt caaacgaatc 101 gataaatgtt gggcattttt atcgatttCC AATtttaaac caaaccggaa 151 taaaccgata tctaaaccct agaatatcta gaaccagata cgtcactggt 201 GCTTACTGAT TACAGTTTCA GTTCCAAAGA TGAGAACTTT GAGCTCCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00508 Mean Expected Number 0.001 +strand -88 : -77 GCATTTTTATCg AC RSP00751 Mean Expected Number 0.001 -strand -73 : -84 AAAtCGATAAAA AC RSP01000 Mean Expected Number 0.004 -strand -85 : -94 ATGCCCaACA Totally 3 motifs of 3 different REs have been found Description of REs found 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: integral membrane Yip1 family protein |LOCUS: AT2G36300 |PROD: the same as GENE |complement(15220139..15221351) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +143 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.25 C - 0.20 1 actactgggc cgaacagacc cattgggcca atttcgttta taaaagaggg 51 tataacggta atatcatcag aagatatacg tcaccatgcc agtttcgaag 101 aagcctATTG Gttatatttc gtcattaact agacggaatg acgaaactac 151 cctcagatgc cttcttctaa agttgtctct tcactgtcaa gaagaagaag 201 AGAACAAAAA AAAGAAAGGA ATTTTCTCTG AAACGTCACG AACGTGTGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00203 Mean Expected Number 0.005 +strand -126 : -117 TATACGTCAc AC RSP00233 Mean Expected Number 0.005 +strand -126 : -117 TaTACGTCAC AC RSP00319 Mean Expected Number 0.003 +strand -133 : -125 CAGAAGATA AC RSP00862 Mean Expected Number 0.004 +strand +13 : +21 AGAAAGGAA Totally 4 motifs of 4 different REs have been found Description of REs found 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G36310 |PROD: the same as GENE |complement(15231576..15233951) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +239 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.36 C - 0.12 1 tataaaaagc ctagtaatca attccttatt tctaaggaaa atttgtagat 51 aattcaattt aagaaagggt ttatcgtgaa agataatttt agcatgattg 101 gttaacttat aaatgtggct taaaataagg ttagattatt tttatatata 151 catctgtcat cgcaaaaaga gggaaaacaa aaaataagaa aattgtggct 201 GGACGACTCA GCAATTCGTC GTCTTCTTTC CATATATCTT GTTTATTATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00525 Mean Expected Number 0.009 +strand -51 : -45 ACATCTG Totally 1 motifs of 1 different REs have been found Description of REs found 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G36410 |PROD: the same as GENE |15285848..15287767 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +272 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.33 C - 0.14 1 tgccaaaaaa ttctttattt tatgcaatgg cacattttct gcttttcctt 51 tacaggcaaa aactctttct ttcctaaaga tgcattattt ttccatttga 101 taaaataaaa aaaacttgac ggtacaaaaa tacacagaag ACAATcgaat 151 taagtaatga ctaagtatta agattaggtg aaatggtgta attaaaccga 201 TGGGAATAAT ATAATTATTA TTTAAATACA GAAACAGAGC TTGCTTTACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.005 +strand -157 : -142 TTTCCTTTAcAGGCAA AC RSP00080 Mean Expected Number 0.005 -strand -142 : -157 TTGCCTgTAAAGGAAA AC RSP00669 Mean Expected Number 0.002 +strand -103 : -90 TGATAAaATAAAAA AC RSP01013 Mean Expected Number 0.004 -strand -102 : -111 CAAATGGAaA Totally 4 motifs of 3 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G36470 |PROD: the same as GENE |complement(15306441..15308069) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +622 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.31 C - 0.13 1 aaagtggtct aactgtctaa gtaatatttt tggccgatcg ataaatatga 51 ttcaattata aaatgaattt taaaaacaca tcatttctag atagtttcac 101 attaaacaaa ATTGActatc aagcattgta tcagcaaaag aaagatatca 151 aggggaagag aagagtttaa aattcataaa tgttgataat gcaaggaaca 201 TGGTACAAAA TATCTAAATT TCATTTCTGC AAATCTCTTG TCGTTAGCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.002 +strand +37 : +46 CTTGTCGTtA Totally 1 motifs of 1 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pyruvate kinase, putative |LOCUS: AT2G36580 |PROD: the same as GENE |15346201..15350332 |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.31 C - 0.18 1 ttctaaaaat taacaaaatc atttaaaccg acaaaaaaaa ctttaaaaga 51 tcagcgtatt ataaaccaac gggggatagt ttgcattagg tattggacat 101 ctggggggta aatagagcga aacaaaagtt gaggcttgtt tttcaacatt 151 ttcattttat tgtgtgctat ttaaactgcg tcgtatttgg aggcatattc 201 GCCGGTCAAG CGTATCAAAT ACCCAATCAC GCGAACTTTT CTCCGCCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00633 Mean Expected Number 0.001 -strand -131 : -143 GTTGGTTtATAAT AC RSP00727 Mean Expected Number 0.009 -strand +11 : +5 GCTTGAC AC RSP00751 Mean Expected Number 0.002 +strand -176 : -165 AAACCGAcAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 609. Group TF: S2F /AC: RSP00633//OS: Spinacia oleracea /GENE: RPL21/RE: CV /TF: S2F 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ProT3 |LOCUS: AT2G36590 |PROD: proline transporter, putative |complement(15349758..15352416) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +170 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.41 C - 0.17 1 cagccacata catttcagag ttgatgtttt ttttgttttg gattgttttg 51 tgataagtct aacactatca tttgtacaat ttgttcatat attatcccaa 101 ttttgcagta aatgattgtg tctagatctg aaccacTCAA Ttccaaagaa 151 atttcttcat tcaccacatt ttaattgtgc ttgcttcgta attcgtatat 201 AATGAAAGAA ACTGTTCAAC AACTTCTGAT TTCTAAAATC TTTTAAAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.001 +strand -198 : -189 GCCACaTACA Totally 1 motifs of 1 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L24 (RPL24A) |LOCUS: AT2G36620 |PROD: the same as GENE |complement(15357486..15358944) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.33 C - 0.18 1 ttggtcctat taagactgta ctaactatca ttttttattt attagaggcc 51 atcaaatctt tgtgtaatgg gtttttaact aaaacatttc tttcatgggc 101 caagacattt aatttcggct aaaaggccca ttaaactcct ccaaaactag 151 ggctcaggcg aattcatctg ccttaaatag attcgtaatt ctagaaaaca 201 GATTTTTTAG GGTTTCAAGT GAAAAGAGTA ATAGCGCGGC GGAGCCATGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.002 -strand +41 : +35 CGCCGCG AC RSP00279 Mean Expected Number 0.002 +strand +7 : +15 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +15 : +7 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 -strand +16 : +7 gAAACCCTAA AC RSP01601 Mean Expected Number 0.008 -strand +24 : +17 TTTCACTT Totally 5 motifs of 5 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: GAMMA-TIP |LOCUS: AT2G36830 |PROD: |15452505..15453653 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.29 C - 0.25 1 atccgccacg tagattggtc ggttccgctt cgctggaatt atagcgatgt 51 acttgtttag cctgttttca aaattattta aatctctaac cgctccaatc 101 aaataatttc tccaccaaat attaataata tatcatccgg taaccggtca 151 ccaaaatggc gccacctcag atataagtaa gagcacatag tagaccagaa 201 AAAATCATCA AATCCATCTC CCACTCTTCT AGCATCTTGA AGCTTAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -189 : -196 TACGTGGC AC RSP00048 Mean Expected Number 0.000 -strand -187 : -198 tCTACGTGGCGG AC RSP00051 Mean Expected Number 0.006 +strand -196 : -187 GCCACGTAgA AC RSP00068 Mean Expected Number 0.005 +strand -196 : -187 GcCACGTAGA AC RSP00075 Mean Expected Number 0.005 -strand -188 : -197 cTACGTGGCG AC RSP00132 Mean Expected Number 0.003 +strand -40 : -33 GCCACCTC AC RSP00210 Mean Expected Number 0.000 +strand -40 : -29 GCCACCTCAGaT AC RSP00248 Mean Expected Number 0.003 +strand -40 : -31 GCCACcTCAG AC RSP00280 Mean Expected Number 0.007 +strand -196 : -187 gCCACGTAGA AC RSP00682 Mean Expected Number 0.001 +strand -196 : -187 GCCACGTaGA AC RSP01034 Mean Expected Number 0.007 -strand -190 : -196 ACGTGGC AC RSP01259 Mean Expected Number 0.002 -strand -188 : -195 CTACGTGG AC RSP01577 Mean Expected Number 0.008 -strand -140 : -149 GCTAAACAAg Totally 13 motifs of 13 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 47. Group RE: ABRE A2; ABRE2 /AC: RSP00048//OS: Hordeum vulgare /GENE: HVA1 gene/RE: ABRE A2; ABRE2 /TF: unknown 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 203. Group TF: MAT2 (ROM2) /AC: RSP00210//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,B /TF: MAT2 (ROM2) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ACT domain-containing protein |LOCUS: AT2G36840 |PROD: the same as GENE |complement(15458652..15460793) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.16 T - 0.24 C - 0.13 1 aaaaaaagaa aaaaaaaact agtaaccaac caccattgtt tatttagact 51 tgcttttaaa aaatttgtta gttaaaaata taaaatggaa ttagacaatt 101 agtgggttct atgtacctct aaaacgagaa aaaataaatc agataccaaa 151 gagagaagat taataagata gttttgagga agaaatcaca attagagctt 201 AAAGCATAGG AGGAACAACA CAAACATGGG TTCAAGTACA ACAACACGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00808 Mean Expected Number 0.009 +strand -134 : -128 GTTAGTT AC RSP01454 Mean Expected Number 0.007 +strand -176 : -170 ACCAACC AC RSP01755 Mean Expected Number 0.001 +strand -174 : -167 CAACCACC Totally 3 motifs of 3 different REs have been found Description of REs found 761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC: RSP00810 RSP00812 RSP00813 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G36885 |PROD: the same as GENE |complement(15489083..15490790) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.27 C - 0.26 1 cgattggtat actaactgtt gaaagcctct aaaggaatta gagagtttca 51 tattttaagg ctcacgtgag agtcacgtgg gaatcggagc gtgttgagtc 101 cacgcgaaaa aatgcaaaac ggcagcgttt taacatagag tcgtgtcact 151 ttcttcacct ttctcagact atctcattcc cttcccctac catttccctc 201 ACTTTACCAA CACAAACACT AAGCTCTATC CTCCAATGGC GGCAATCACC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00640 Mean Expected Number 0.002 +strand -128 : -121 TCACGTGG AC RSP00781 Mean Expected Number 0.000 +strand -140 : -131 CTCACGTGAG AC RSP00781 Mean Expected Number 0.000 -strand -131 : -140 CTCACGTGAG AC RSP01435 Mean Expected Number 0.008 +strand -18 : -9 TCCCCtACCA Totally 4 motifs of 3 different REs have been found Description of REs found 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 736. Group TF: G-box binding TF /AC: RSP00781//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 5 /TF: G-box binding TF 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: MEMB11 |LOCUS: AT2G36900 |PROD: |complement(15498514..15499901) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +235 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.31 C - 0.21 1 aaaggagaaa atagtggagg tgtggattcc acatcatctt cacacaaaaa 51 aaatgcttca caaaactctc gttgattaga gaaataagta tagagatcaa 101 tttgtaagcc tgtgttggcc caacttaacc ttcaggccca taaaacattt 151 cgatatgggc ctaacgaagc atttagcgct ttttcttgtt tcctctaact 201 CCGATTAAAT CTCGATCTTT TCTCGTCGTA ACATCTCCGA TTGCGATTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.006 +strand -111 : -101 ATAGAgATCAA AC RSP00847 Mean Expected Number 0.006 +strand -172 : -163 CCACaTCATC AC RSP00914 Mean Expected Number 0.006 -strand -163 : -172 GATGATGTGG AC RSP00915 Mean Expected Number 0.004 -strand -163 : -172 GATGATGTGG Totally 4 motifs of 4 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: heavy-metal-associated domain-containing protein |LOCUS: AT2G36950 |PROD: the same as GENE |15522212..15524010 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.27 C - 0.27 1 ctcgtaccat cacttgtgtc aaaccggcgt caaacgccca ctctcgctga 51 cctcagcccc caacaaatac acacatacgg aaatgaacat gtaatatcaa 101 accatataat attcagtaaa aaatcagtat cgataatata gtaaaataat 151 aaccttcacg cattccttct tcttctataa atacacacat ttgcctccac 201 TTACTCTCGT TCAAACAATT CTTCGTCCTA TTAAATACAA AAAATAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01296 Mean Expected Number 0.010 +strand -26 : -18 CTATAAATA AC RSP01301 Mean Expected Number 0.003 +strand -26 : -17 CTATAAATAC AC RSP01469 Mean Expected Number 0.004 +strand -191 : -182 TCACtTGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G37110 |PROD: the same as GENE |15599636..15601072 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.33 C - 0.16 1 cagatatatt ttccttatat tacataaaaa tggtttaccc ataaattgat 51 gagttttatc aagagacttg caaaatattg tggagatcac gaaaatgcct 101 tgaggcccag atattaatgg gcttttaggc ccatatgtta atgagatcca 151 aatatttcca agttaagtaa ttggtaatga cggtgaaggt gcctttgact 201 ATCTTAACGC GTACGGGACG GTCGATAAAT TTAGTTAAAG TCTCTTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 -strand +49 : +41 AGAAAGAGA AC RSP00892 Mean Expected Number 0.005 -strand -84 : -92 TTAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: peroxidase 21 (PER21) (P21) (PRXR5) |LOCUS: AT2G37130 |PROD: the same as GENE |complement(15605000..15607137) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.27 C - 0.14 1 tagatagcta gtggttttaa atttgagtat taatatgagt ttagaacgat 51 taagaaaccc ccgattattg aaaaataata attaattaat agtgacagca 101 accactatga ctaagaaata aagatgctta attttatcat acacgattag 151 agaggttctc aaactctata taaccctaca ttggaacaca tatagagcca 201 CACACCAATA ATTAATTAGA CAAAAGATAA GAGAGAATAG AGAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.005 +strand -136 : -125 TTATTGaAAAAT AC RSP00864 Mean Expected Number 0.003 +strand +39 : +47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +41 : +49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +43 : +51 AGAGAGAGA Totally 4 motifs of 2 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L12 (RPL12A) |LOCUS: AT2G37190 |PROD: the same as GENE |complement(15626486..15627198) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.26 C - 0.23 1 agacgacgat tcattttcag gaaacggttc aactaaaccg gagaatatta 51 aagtaaaccg aacagaaccg agtagtctaa tttgtacaga ttgggttaca 101 aagcccatag atgatagaag cccataaggg tagatccgta aatgtctctt 151 tcgtaaaccc taattttcac actccttcaa aaaccttgga gctcttcttc 201 AAGCGCCTCC TCGTTTCGGA ACTTCGATCG TAGAAACCTT GAAAATCCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00060 Mean Expected Number 0.000 +strand +1 : +12 AaGCGCCTCCTC AC RSP00279 Mean Expected Number 0.003 -strand -38 : -46 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -46 : -38 AAACCCTAA AC RSP01303 Mean Expected Number 0.006 +strand -47 : -38 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -47 : -38 TaAACCCTAA AC RSP01642 Mean Expected Number 0.005 +strand -61 : -52 AAATGTCTCT Totally 6 motifs of 6 different REs have been found Description of REs found 59. Group TF: ABF /AC: RSP00060//OS: Zea mays /GENE: rab28/RE: CE3 /TF: ABF 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ADK/ATPADK1 |LOCUS: AT2G37250 |PROD: adenylate kinase family protein |15649016..15650797 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.31 C - 0.19 1 agctgaaaat aataataatc ccaatttaaa atcgaaatcg attttctcat 51 accgttggtt aatctcgtgg agttgggtta ttacacgtgt cagatgatgt 101 aaccatgatc tcagagaaaa agtcacatgc cacgtcagtt aactttaggg 151 caaaatggga aaagaatcta aagagcatat gttcgtgcac gttcttgttt 201 AGGGTAAGCT CAAAGCTCAA GCCGCTTCTA TCTCTCTACA TTTCTCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -64 : -72 TGACGTGGC AC RSP00208 Mean Expected Number 0.000 +strand -72 : -61 GCCACGTCAGtT AC RSP00214 Mean Expected Number 0.002 -strand -64 : -71 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -71 : -64 CCACGTCA AC RSP00247 Mean Expected Number 0.004 +strand -72 : -63 GCCACGTcAG AC RSP00248 Mean Expected Number 0.002 +strand -72 : -63 GCCACGTCAG AC RSP00331 Mean Expected Number 0.007 +strand -102 : -94 GTAACCATG AC RSP00340 Mean Expected Number 0.004 +strand -119 : -110 TaCACGTGTC AC RSP00524 Mean Expected Number 0.009 +strand -118 : -112 ACACGTG AC RSP00524 Mean Expected Number 0.009 -strand -111 : -117 ACACGTG AC RSP00861 Mean Expected Number 0.002 -strand +51 : +43 AGAAAGAGA AC RSP00887 Mean Expected Number 0.002 +strand -39 : -31 AAGAATCTA AC RSP01034 Mean Expected Number 0.006 -strand -66 : -72 ACGTGGC AC RSP01035 Mean Expected Number 0.009 +strand -116 : -110 ACGTGTC AC RSP01092 Mean Expected Number 0.007 +strand -40 : -30 AaAGAATCTAA AC RSP01106 Mean Expected Number 0.000 +strand -74 : -64 AtGCCACGTCA AC RSP01256 Mean Expected Number 0.003 +strand -118 : -111 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -111 : -118 ACACGTGT AC RSP01656 Mean Expected Number 0.000 -strand -62 : -73 aCTGACGTGGCA Totally 19 motifs of 17 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: chloroplast lumen common family protein |LOCUS: AT2G37400 |PROD: the same as GENE |complement(15703234..15704481) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.33 C - 0.21 1 aggatcacaa aagcttggtc acaccaacaa tattcggatt aaggaaagag 51 atcagcgttt tgatttgtga tatttacatt tcctcttcta gtcttgggct 101 tataaaggcc caaattcagg gaccaaaaac gacgccgtaa cttgaatcat 151 attcgaactc gaaggctcct tttgatgctt cttcttcctc aaatctcact 201 GTAGGGTTTT TAGGGGTTTT CTCTCTCTTT GCAATCATGG AGTCTCTAGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.004 +strand +19 : +29 TTCTCTCTCtT AC RSP00734 Mean Expected Number 0.005 -strand -139 : -146 CAAAACGC AC RSP00864 Mean Expected Number 0.002 -strand +28 : +20 AGAGAGAGA AC RSP01205 Mean Expected Number 0.005 -strand -93 : -102 CCTTTATAAG Totally 4 motifs of 4 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: arginine biosynthesis protein ArgJ family |LOCUS: AT2G37500 |PROD: the same as GENE |complement(15746418..15749836) |SUPPORT | 17 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.30 C - 0.21 1 cactttaaca aattacaaac gcagattaaa taacaaaaac gctttgcaca 51 caaaacaata aaataataat gaccaaaacg cagcgtttta ggctaatcac 101 agcctttctc tttctctgcc aacgcccaac agtgaatttt ctctgttact 151 gtgactttcc tctagggttt aaggtttgat tttcagacaa aagtataatc 201 AATCATTCTG TAACTTAAGG TTTGATATTC AGACAAAAGT ACAATCAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.005 +strand -127 : -120 CAAAACGC AC RSP00861 Mean Expected Number 0.002 -strand -86 : -94 AGAAAGAGA AC RSP01621 Mean Expected Number 0.009 -strand -4 : -13 TAtACTTTTG AC RSP01678 Mean Expected Number 0.009 +strand -145 : -134 CAATAAAATAaT Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATORC2 |LOCUS: AT2G37560 |PROD: origin recognition complex subunit 2 (ORC2) |15765726..15768287 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +920 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.31 C - 0.17 1 tgtcacagcc atgtgatttt gtgaacatca catatagacc gttggatctg 51 ttgtcatccg tatcatcaca tcggaaccgt ttaattttta tgattgtgaa 101 acgacgacgt aaagttgtta accgggaaag acgaagaaaa acgcgcggga 151 aaattgagag actgcatctt aatcatcgta gggattctct attttttgga 201 ATCTGATTCA TATGTTTGGG GTTTAATAGT CTCAGCTCAA ATAAATCTAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.003 -strand -49 : -56 TTTCCCGC AC RSP00249 Mean Expected Number 0.001 +strand -165 : -157 AGACCGTTG AC RSP00914 Mean Expected Number 0.002 -strand -134 : -143 GATGATAcGG AC RSP00943 Mean Expected Number 0.006 -strand -97 : -107 TCgTTTCACAA AC RSP01252 Mean Expected Number 0.000 -strand -48 : -62 TTTTCCCGCGCgTTT AC RSP01596 Mean Expected Number 0.006 +strand -107 : -97 TTGTGAAAcGA Totally 6 motifs of 6 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1156. Group TF: DcE2F /AC: RSP01252//OS: Daucus carota /GENE: Synthetic OLIGO/RE: DcE2F BS /TF: DcE2F 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G37580 |PROD: the same as GENE |15771806..15772631 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.34 C - 0.22 1 tatcaaatta tacactgaat actacttaat tatcgttaca aataacattt 51 ggaagaccta ttggccggtt ttatttttga atattccact cagtttaaca 101 aatatataat tttgaccttt cgccggagaa aaaacaaacc aaacttactt 151 agtaagaagc actttccatt attattatct ctgttccccc accacatttc 201 ATATTCACAT AATAATAATG TTCAATAATA CAACAACCTC CTTCGGCTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01435 Mean Expected Number 0.006 +strand -16 : -7 TCCCCCACCA Totally 1 motifs of 1 different REs have been found Description of REs found 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G37660 |PROD: the same as GENE |complement(15802392..15804137) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.30 C - 0.16 1 cgttcaaaat attgagttgt atacacagag aaaaatttgt gtagttctcc 51 aaatataaat caaacagtaa aactatgtta cttcaattaa ttagatgttc 101 ttcgatcatt cgtgggagat aggccatggc ccattttaaa atcaggcccg 151 tttaaagcgt aattagaatg aaacaaaaag acaaatataa ttcaaaagat 201 AAGGTGACGT GGCGAAAATC GGAAATTTTG CGATATTTCT CACTCTCTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand +5 : +13 TGACGTGGC AC RSP00122 Mean Expected Number 0.004 -strand -83 : -89 CTCCCAC AC RSP00208 Mean Expected Number 0.000 -strand +13 : +2 GCCACGTCAcCT AC RSP00214 Mean Expected Number 0.001 +strand +5 : +12 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand +12 : +5 CCACGTCA AC RSP00248 Mean Expected Number 0.001 -strand +13 : +4 GCCACGTCAc AC RSP01034 Mean Expected Number 0.004 +strand +7 : +13 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand +15 : +5 tCGCCACGTCA AC RSP01280 Mean Expected Number 0.000 +strand +3 : +13 GGTGACGTGGC AC RSP01692 Mean Expected Number 0.004 +strand -100 : -93 TTCGATCA AC RSP01729 Mean Expected Number 0.000 +strand +3 : +14 GGTGACGTGGCG Totally 11 motifs of 11 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown 1537. Group TF: STF1/HY5 /AC: RSP01729//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: EMB1513 |LOCUS: AT2G37920 |PROD: expressed protein |complement(15876187..15877149) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.33 C - 0.12 1 gggatattca ataacttgtg agtgtaacca accaaaccct atgagaatgg 51 aatgtttttt ggttattgat ttgatatgtg tgtgtgtgca ttcgaatata 101 attaagagag ttgttttgta acattttgtg aaaATTGAgt tgactgaaaa 151 agtcaaccta aaaattgtaa aatcaatttt atattaaaga acaataaaaa 201 AAAAATCTGG AACGGATAAA ATAATTTGCT CGGCTTCCTC AGCTCCAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01454 Mean Expected Number 0.002 +strand -174 : -168 ACCAACC Totally 1 motifs of 1 different REs have been found Description of REs found 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G37975 |PROD: the same as GENE |complement(15898931..15900717) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1503 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.33 C - 0.18 1 cggattataa cttatgatat acatggtttc ttgatcacaa aatcatttgt 51 cccacagaga gccaaaggga actttttaac ttatgttttg ttttcaattt 101 cactgagcca tgtgatcggg tcctgaccgg aatagagtca aaccgggtca 151 acccggttat ggattttttc ttcaatgatg gttaaaaaag tttagaatgt 201 GAAAAACAGA TATCGTTGGC TTCGTCTCTT CAACAAGATC TCAAATCCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.008 -strand -156 : -166 TGAtTTTGTGA AC RSP00331 Mean Expected Number 0.007 -strand -171 : -179 GAAACCATG AC RSP00613 Mean Expected Number 0.010 -strand -166 : -173 ATCAAGAA AC RSP01091 Mean Expected Number 0.006 +strand -69 : -59 ATAGAgTCAAA Totally 4 motifs of 4 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G38310 |PROD: the same as GENE |16057141..16058246 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 aaacccatat tataattcta gtgttgatat acgagaatta tatattggtc 51 acttgcccaa ttaaaaatat cgtgtataga aaacagtcaa gtcaacaact 101 atagcaaggg gcaaaaccgt aatttcacaa caagcaactt gctcggtttt 151 ttcgttatca ccactcacat gaactctgca ttaaaaactc tatctctctc 201 AAATCGAAAG GCACAGCCCA ACTTTTCGCA AGTCGCTGTA AAGTTTGATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.005 +strand +37 : +44 TGTAAAGT AC RSP00917 Mean Expected Number 0.005 -strand -105 : -114 GTTGACTTGA AC RSP00943 Mean Expected Number 0.008 +strand -81 : -71 TaATTTCACAA AC RSP01596 Mean Expected Number 0.008 -strand -71 : -81 TTGTGAAATtA Totally 4 motifs of 4 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G38465 |PROD: the same as GENE |complement(16113341..16113978) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.29 C - 0.21 1 cgtcatggat tttgtgtcgc tttaccgtgc aagttgcaaa ctatgcagtg 51 tttgttgatc cgatgacagt ttctttcttc agcccaaaag cccaaaaggc 101 ccaaagtaaa atagcctctt gctttaatac acgtcggtat ctctacagct 151 aacacgtaaa acagacgtgg caagagttgc ttccagaatc attaatagtt 201 AAAAAAAATC ATCATTGGCA CAAGAAAGTG AGATATTTCC TAGTCTTGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00248 Mean Expected Number 0.003 -strand -30 : -39 GCCACGTCtG AC RSP00530 Mean Expected Number 0.002 -strand +8 : -4 TtTTTTTTAACT AC RSP00550 Mean Expected Number 0.002 +strand -195 : -185 TGGATTtTGTG AC RSP00819 Mean Expected Number 0.003 -strand -30 : -39 GCCACGTCTg AC RSP00860 Mean Expected Number 0.002 -strand -123 : -131 AGAAAGAAA AC RSP00881 Mean Expected Number 0.007 -strand -142 : -151 ATCAACAAaC AC RSP01034 Mean Expected Number 0.006 +strand -36 : -30 ACGTGGC AC RSP01160 Mean Expected Number 0.000 +strand -41 : -30 AaCAGACGTGGC AC RSP01261 Mean Expected Number 0.005 -strand -42 : -49 TTACGTGT Totally 9 motifs of 9 different REs have been found Description of REs found 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1073. Group RE: G-box /Group TF: CG-1 /AC: RSP01160//OS: Nicotiana plumbaginifolia /GENE: CAB/RE: G-box /TF: CG-1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G38550 |PROD: the same as GENE |16139092..16141493 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.36 C - 0.17 1 ttgactcaag gtttattaga acaaaagtca ggtttttagc tcattaaagt 51 caaccggata aagacgaccg gtctaattcg gtttgggatt tagaaagact 101 ctatatcgct cagagggtct aacgcagacg cttttcaact ttcgagatat 151 ttttcttagg tatatatttc caaatgttac ggcgtcgttt tcaaaaacat 201 ATTTTTGTTG TTGCGTAGTA GTCCTTCGGA AATTCTTTGC TTCCTAGTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00918 Mean Expected Number 0.003 -strand -147 : -156 GTTGACTTTA Totally 1 motifs of 1 different REs have been found Description of REs found 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: MVD1 |LOCUS: AT2G38700 |PROD: mevalonate diphosphate decarboxylase (MVD1) |complement(16187774..16191023) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.38 C - 0.13 1 gaggttattt atggttaatt taagagtaca cgcttatttc gtaagaatat 51 tttaaaagtt ggaggttatt tatggttaat ttaagagtac acgcttattt 101 cgtaagaata tttaaaagtt gggggtgttt attttgattt tttcgcatat 151 taaaaaatta agaatcatga atcgcttacg catgtgcagt ttggacgcaa 201 CTGAATCGTA CCAATGAGAT CATCCTCCTT ATTTTAATCT CCCACCTGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.005 -strand -14 : -23 GCACATgCGT AC RSP00122 Mean Expected Number 0.001 +strand +39 : +45 CTCCCAC Totally 2 motifs of 2 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AMMECR1 family |LOCUS: AT2G38710 |PROD: the same as GENE |complement(16191447..16194251) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +409 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.30 C - 0.20 1 cttttaatct tttttacttt tgaaaaaaaa aaatcttttg tgaatctagc 51 tagggcgacg tatatatatg gagaaaaaca aaaactagct gcggccgtaa 101 ctaagctcaa atagtttagt taacaagtct ttgagaaaaa gacacaccaa 151 ccaaaaaaat tgtcactata ctcaaaatca aacaacaaag ctttctaatt 201 AAACAAAACG TAGACACTTC ATCTTCCTCT CTCTCCTGCG CTTTTCTTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -179 : -190 cAAAAGTAAAAA AC RSP00503 Mean Expected Number 0.002 +strand -155 : -148 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -148 : -155 CTAGCTAG AC RSP00653 Mean Expected Number 0.002 +strand +27 : +37 cTCTCTCTCCT AC RSP00863 Mean Expected Number 0.001 -strand +32 : +24 AGAGAGGAA AC RSP00865 Mean Expected Number 0.001 -strand +36 : +28 GGAGAGAGA AC RSP00997 Mean Expected Number 0.005 -strand +23 : +14 GATGAAGTGT Totally 7 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G38740 |PROD: the same as GENE |complement(16201405..16203191) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.37 C - 0.20 1 ttgtaactct atttgaaaga ttctatgtga ccactaaacc gaattacgga 51 ttccaaccga atttcacctc taactaaacc ggttgaatgt tgatgaattc 101 cggtttgaaa tttcggcagt atgtgggtga cacgtggcga agaatagtcc 151 ccgaatcttc ctctgacgac catttgatac ttttttttct tcagtttgtt 201 GGTTTTGTCC TCTTAACAAA ATATTCTTCA AACTCTCTCT GTTGTTTGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -71 : -63 ACACGTGGC AC RSP00056 Mean Expected Number 0.002 -strand -63 : -72 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -72 : -63 GaCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -63 : -72 GCCACGTGtC AC RSP00175 Mean Expected Number 0.001 +strand -70 : -63 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -72 : -63 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -73 : -62 TGACACGTGGCg AC RSP00340 Mean Expected Number 0.002 -strand -63 : -72 gCCACGTGTC AC RSP00524 Mean Expected Number 0.007 +strand -71 : -65 ACACGTG AC RSP00716 Mean Expected Number 0.004 -strand +7 : -2 CAAAACCAA AC RSP00936 Mean Expected Number 0.000 -strand -62 : -73 cGCCACGTGTCA AC RSP01031 Mean Expected Number 0.007 -strand -177 : -184 AGAATCTT AC RSP01034 Mean Expected Number 0.005 +strand -69 : -63 ACGTGGC AC RSP01035 Mean Expected Number 0.007 -strand -66 : -72 ACGTGTC AC RSP01255 Mean Expected Number 0.001 +strand -71 : -64 ACACGTGG AC RSP01589 Mean Expected Number 0.000 -strand -63 : -75 gCCACGTGTCACC AC RSP01599 Mean Expected Number 0.008 -strand -183 : -190 TTTCAAAT Totally 17 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1412. Group TF: GBF /AC: RSP01589//OS: Glycine max /GENE: SRS-1/RE: G box /TF: GBF 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ANNAT3 |LOCUS: AT2G38760 |PROD: annexin 3 (ANN3) |16208090..16209745 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.22 C - 0.22 1 atgctccata gaactcatca atacacacaa ctaatatatg accctaattt 51 taaatgtcct caaaacgaaa aatctcgaca gaaataggct aattgcgtca 101 tattacagtt tcgtcttcgg gggcatttat gtcaaacacc atccccagct 151 acataattac acctcctaag taaataactc cgccttgagg aaaaaaaact 201 AAAACGGCTC TAAATTGAAA ACAAAAGAAG AGAGAGAGAG AGAGAGACGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand +29 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +31 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +33 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +35 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +37 : +45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +39 : +47 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 +strand +30 : +46 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand +32 : +48 GAGAGAGAGAGAGAGAc Totally 8 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: HAP3A |LOCUS: AT2G38880 |PROD: |16245554..16247912 |SUPPORT | 7 exon(s) |Alternative mRNAs: 6 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.34 C - 0.16 1 gataattcat tgaaaaatta aatgaattta tgtttaaatt ctcatctaat 51 tattatacaa tagattgaaa aagtcaccct tagtcaaatt gttcatatag 101 ttttcttaaA TTGTctaatt aattaccaaa ttaatccttg tctgaaaact 151 tttacaaaag ctaatacaga acaaatacaa aaaaacgtgt aatcatatca 201 TATAAACACC AGTCGCAGCG TTTCGTAGAA AAATTCGATT TCTCTAAAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.004 +strand +1 : +12 TATAAAcACCAG AC RSP00790 Mean Expected Number 0.001 +strand -179 : -169 aTGAATTTATG AC RSP00941 Mean Expected Number 0.008 -strand -131 : -138 TTTCAATC AC RSP01594 Mean Expected Number 0.008 +strand -138 : -131 GATTGAAA Totally 4 motifs of 4 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT2G39050 |PROD: the same as GENE |16310481..16312707 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.31 C - 0.22 1 taaagtcttg ktatttactt aagtaagcct aaatttttaa taatgatctt 51 atcttatgta attgattaaa aaatcgtata gtagactatt caacaaaacg 101 tgaatcatag tgttgttacc aaaacccatt agtgtagcga caactgtcct 151 ttcacatcct tatacaaatt ctcttccctc cggtcatctc ggaaacttgt 201 ATCATCGACA AAACATAAAT ACTAATGGAG CACCACCACC AGCATCACCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.008 +strand -189 : -179 TATTTaCTTAA AC RSP00227 Mean Expected Number 0.004 -strand -146 : -154 AAGATAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pseudouridine synthase family protein |LOCUS: AT2G39140 |PROD: the same as GENE |16337261..16340438 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.38 C - 0.18 1 tagttaagaa gttggtttga aggtatagtt ttttctggaa tttaaagttt 51 aactttaaaa tttattaacg atttagtatt agattagttt attaatttgt 101 tgaaaaatct ggtctatttt gttacttttt tcaaaaatat ggtctatttt 151 cataaaaatc cctaaaatat ccgaatttat cggataaacc caaaccccct 201 ATCGGGAAAA CCCAACACAC CGTCTCTCTC TCACTCTCAC TTCCCATCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.002 +strand -70 : -59 TCAAAAATATGg AC RSP00864 Mean Expected Number 0.002 -strand +31 : +23 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L35 (RPL35B) |LOCUS: AT2G39390 |PROD: the same as GENE |complement(16457738..16458956) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.37 C - 0.20 1 aaaaaataac agttcaatcg gcgcgtgtct aattatacaa ctctctattc 51 acttttttag tattttcttg cattaataaa tgattttggt acaagatttc 101 actactagga ttttataatc cctggcccat aagatataaa actcagccca 151 ttagatgtgt gttgggtttt atactcacag tcaaagccca aatataacct 201 AAAATCTGAT TATTAACTCT TAGCCGTCTT CTTCTTCATT TTTCTCTAGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 +strand -181 : -172 GgCGCGTGTC AC RSP00523 Mean Expected Number 0.003 -strand -173 : -179 ACACGCG AC RSP01559 Mean Expected Number 0.008 -strand -175 : -180 ACGCGC Totally 3 motifs of 3 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT2G39410 |PROD: the same as GENE |16462647..16465295 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.35 C - 0.13 1 cctatcttaa attccatgta cacttttcgg aaactacttg tttgatttac 51 taattagtgt tcgagagtta ggaattaatt taaaaaattt cgtaaggtag 101 ggtatatttt gtattatttt gaaagttgaa ggggtgaaat gaaaacaaag 151 aaggggaaag tcatgtatat tattaagttg tcagggtcaa acgatcaagc 201 AGAACTCTAC AATTCTTCTA TATACTTTCT CAACTCTTGT CTCCAAGATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 +strand -182 : -172 TACACTTTTcG AC RSP01234 Mean Expected Number 0.010 +strand -6 : +1 TCAAGCA AC RSP01499 Mean Expected Number 0.003 -strand -43 : -52 TTCCCCtTCT AC RSP01621 Mean Expected Number 0.009 +strand -182 : -173 TACACTTTTc AC RSP01641 Mean Expected Number 0.004 +strand +35 : +44 TCTTGTCTCc Totally 5 motifs of 5 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: photosystem II reaction center PsbP family protein |LOCUS: AT2G39470 |PROD: the same as GENE |16483337..16485319 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.34 C - 0.19 1 gaattcaagt tctatgtttt tgacttatca agattctctt tttaaaactc 51 actaacttat aaactgtaaa catacaaatg cagtatcttc tctaaccagt 101 aaatgatcat aaatcgatct atcaccacat ATTGTttgca tctttcatta 151 tccttttatc cacatgttga tgaatggaga agtccgagaa atgacgaaaa 201 TCAGAAATTT CTTATCCACA TAGAACACTA AGGCAATGTT CATTGATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00280 Mean Expected Number 0.004 +strand +15 : +24 TCCACaTAGA AC RSP00894 Mean Expected Number 0.009 +strand -199 : -192 AATTCAAG AC RSP01031 Mean Expected Number 0.009 -strand -164 : -171 AGAATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RHC2A |LOCUS: AT2G39720 |PROD: |complement(16574287..16575900) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.28 C - 0.18 1 atgggtagtt attatttcag ggtaacaaac agtttcaatt ttcaaaaaaa 51 aaaaaaaaac cgtttaatta aaattaccaa caaggaggaa aaaaaaaaaa 101 agaggaggag gtggtggtga cagcacacga aatggacggt tgggtataag 151 ccaattctgt aatcttcttg ttaacacctc cttcttctcc tccgtttatc 201 CTCAAATTAA AAGTCAATCA TATCAAATCC CAAATCCTCC CAGATGTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.002 -strand -87 : -96 CCACCTCcTC Totally 1 motifs of 1 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RCA |LOCUS: AT2G39730 |PROD: |complement(16577824..16580626) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +203 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.25 C - 0.22 1 aatggcttac ctcaatcctc aaaaaaaaaa aaaaaaacaa tgattttcca 51 aagcatatgt ggtaataaat aatgttataa tcttcacttg aaaaaaaaaa 101 caaatccATT GGcacagatt agccatttga cgacaacctc ataaacatat 151 tccacgtgga ccaatcaaaa tagaatcctc ctaatcatct tcctcgtggc 201 AACTTGGCCA ATCCGCATCG TGTGGCGATC AGAGAGTTAA GCCTTGAAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.007 -strand -64 : -73 gTTGTCGTCA AC RSP00153 Mean Expected Number 0.001 +strand -49 : -40 CCACGTGGaC AC RSP00280 Mean Expected Number 0.007 +strand -50 : -41 TCCACGTgGA AC RSP00280 Mean Expected Number 0.003 -strand -41 : -50 TCCACGTgGA AC RSP00596 Mean Expected Number 0.010 -strand +26 : +21 GCCACA AC RSP00682 Mean Expected Number 0.001 +strand -50 : -41 tCCACGTGGA AC RSP00682 Mean Expected Number 0.001 -strand -41 : -50 tCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -49 : -42 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -42 : -49 CCACGTGG AC RSP00938 Mean Expected Number 0.000 -strand +1 : -11 TGCCACGaGGAA AC RSP00969 Mean Expected Number 0.002 +strand -74 : -65 TTGACGACAA AC RSP01460 Mean Expected Number 0.000 -strand -36 : -46 ATTGGTCCACG AC RSP01465 Mean Expected Number 0.000 -strand -36 : -46 ATTGGTCCACG AC RSP01734 Mean Expected Number 0.009 +strand -50 : -44 TCCACGT AC RSP01734 Mean Expected Number 0.006 -strand -41 : -47 TCCACGT Totally 15 motifs of 11 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1330. Group RE: ERSE-II /AC: RSP01460//OS: Glycine max /GENE: BiP9/RE: ERSE-II /TF: unknown 1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATBPM3 |LOCUS: AT2G39760 |PROD: speckle-type POZ protein-related |16590165..16593330 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.27 C - 0.19 1 agatgaaacg gactaatcgc aaacggattt gtccacctcg actgcgataa 51 ccattcaaac aagattgaaa agaaagagag acaaaggttt aaatgaaatt 101 aagaatgtAC AATaatgttg gcttatggtc gttggacact actttcgagc 151 ccattacatt taatatcctt taaaataaaa aataaagaag gcgaaaacag 201 TTTCCCCCAA ATTCTCATAA TTTTCACAAA CAACCTCTCG TCTTCTAGGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.003 +strand -130 : -122 AGAAAGAGA AC RSP00941 Mean Expected Number 0.009 -strand -131 : -138 TTTCAATC AC RSP01078 Mean Expected Number 0.002 +strand -154 : -143 ATAACCATtCAA AC RSP01594 Mean Expected Number 0.009 +strand -138 : -131 GATTGAAA AC RSP01640 Mean Expected Number 0.008 -strand -115 : -124 CTtTGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G39795 |PROD: the same as GENE |16604065..16605240 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.35 C - 0.19 1 aaaatatttt gaattttaca gattttttgt aatgcaattt gttagatgat 51 aaatttcccc ctaatatttt tggcttgatt tagaatgtta tttggttcgt 101 tgatttgaat taaccatcga accgaaccgg gctgatacgg agcctcaact 151 tcaatcgctg ttaaaacctt aaaacccttg aaactccatt ttcttccttc 201 ACTCACAGAA GAAGAGAGAA TCAATCAAAT CAAATCACCA TGGCTTTAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.001 -strand +20 : +10 TTCTCTCTtCT AC RSP00996 Mean Expected Number 0.004 +strand -102 : -93 GTTGATtTGA AC RSP01473 Mean Expected Number 0.000 -strand -158 : -170 AACAAATTGCATT Totally 3 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1342. Group RE: AACA motif /AC: RSP01473//OS: Oryza sativa /GENE: GluA-3/RE: AACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ProT1 |LOCUS: AT2G39890 |PROD: proline transporter 1 (ProT1) |16662757..16665409 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +343 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.27 C - 0.15 1 actagacaaa aataccagct aacagaaagt aataagaaaa aactcaaata 51 aatggaaaga cattaataag gcagatatat gtttttttat attataaatt 101 gttttttttt atagtataaa aataaaaata tcggcattct tataggatcg 151 atctctcatg caaaacaaca aattcagaca agaaacctca acggctcaga 201 CCCACCAATA CCAATTTTTT AAAGAGATTT CTGTCACAAG TAAGAAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00669 Mean Expected Number 0.000 -strand -104 : -117 TtATAATATAAAAA AC RSP01103 Mean Expected Number 0.009 +strand -18 : -11 AAACCTCA Totally 2 motifs of 2 different REs have been found Description of REs found 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G39910 |PROD: the same as GENE |16667674..16670122 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +8 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.18 1 gtgatactac tacatctata ataaccgagg acttttggct ttgatcttgg 51 tcttttgagc tggaccgaac cggaatgtta gaccggacaa atctctatcg 101 ttactcgtcg ttagtcatct ccggtccggt tcttcactaa agttaaaaat 151 ccagttaaac agaaatcaat taagaaaaca caaaacccaa attgaattgt 201 GTAAAGATAT GAACTTTACA AAAGAAAATT GTCAATTTCG AAAAATGTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.009 -strand +20 : +13 TGTAAAGT Totally 1 motifs of 1 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: acid phosphatase class B family protein |LOCUS: AT2G39920 |PROD: the same as GENE |complement(16670102..16671616) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +233 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.34 C - 0.12 1 tcctttttct tatgtctccg ccaaatttgg aaaataaaat aaactagtgt 51 aagatttttt aaaaaaaaat tgaagagaag agaagtttat ttgatcgagt 101 aaagaagata agctgaggca tatcaacttt ggatctgatg acacacaaaa 151 aaaaaaagtc acgtgtaaat gtattatatg ttctctgttt tcttgtgacc 201 AAAGAGGCAG ATTTTGAACC TTTGGATTTT TTTTCGGATC TTGATCAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.003 -strand -88 : -97 GCTTATCTTC AC RSP00524 Mean Expected Number 0.005 -strand -35 : -41 ACACGTG AC RSP00872 Mean Expected Number 0.006 -strand -54 : -63 TGTGTGtCAT AC RSP01202 Mean Expected Number 0.002 -strand +25 : +18 CCAAAGGT Totally 4 motifs of 4 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: peroxisomal membrane protein (PMP36) |LOCUS: AT2G39970 |PROD: the same as GENE |complement(16690910..16693740) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +270 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.28 C - 0.21 1 ctttatatgc taagctgaat caaataagac cgaacacgca gttcaagaaa 51 aagagtctta tccagctaaa ccaaactagt agtacatgga aggttaggct 101 tccgtaatat cacTCAATta taagggcata tcagtcaatt acatacctcc 151 tacactcctc attcctcaac gtcaacttgc gtgtctttct ttcttcgaat 201 GAACTTCTGA AGCGAAAAAA AGAGAGAATT AAAGTCATTC ATTATTTGGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.005 -strand -101 : -110 AgCCTAACCT AC RSP00444 Mean Expected Number 0.000 -strand -6 : -19 AAGAAAGAAAGAcA AC RSP00445 Mean Expected Number 0.001 +strand +16 : +25 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.002 -strand -7 : -15 AGAAAGAAA AC RSP00880 Mean Expected Number 0.006 +strand -34 : -25 CAACGtCAAC AC RSP00918 Mean Expected Number 0.007 -strand -25 : -34 GTTGACGTTg Totally 6 motifs of 6 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G40020 |PROD: the same as GENE |16718057..16720148 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +441 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.34 C - 0.18 1 catgtttaac attatgaatc tttttcctat tgggctaaaa gctctttcga 51 cccacatctc aagcccaact gagatccatt cattgtaatt catactttat 101 tattttttat agtaaCCAAT aagaaaatgg ttgacttaac agagaaaatg 151 gttgacccaa acaaatacta tattattttt ttaattcgat ttcattcaaa 201 GAAGCATTTT TGGGAGACGA GGAGGCGATC CACGGCTTAT TCTTAAGAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 -strand +23 : +14 TCCtCGTCTC AC RSP00933 Mean Expected Number 0.005 +strand -105 : -93 TTTATtATTTTTT Totally 2 motifs of 2 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G40060 |PROD: the same as GENE |16733562..16735263 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.27 C - 0.16 1 acactaaatt gcaaaacgtt ttgattaaga taagaagaac acgtatggaa 51 cattaattgt aatctaatgg atcggttgga acctaaacca taactaaacc 101 ggaatactca tgatgaATTG Gaagtatttg ggctcgaaaa aagcccatta 151 agaaaaatgg aaataaaaat agtcacaaat ctccgttatt aatttttgcc 201 ATAAGCTTGA GAACACTTGA AAAGACAAGA TTCGCGAGTT CTTCGTTCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.008 -strand -28 : -39 AcTATTTTTATT AC RSP00227 Mean Expected Number 0.007 +strand -174 : -166 AAGATAAGA AC RSP01003 Mean Expected Number 0.008 -strand -141 : -150 ACAATTAAtG AC RSP01288 Mean Expected Number 0.005 -strand -155 : -162 ATACGTGT AC RSP01702 Mean Expected Number 0.008 +strand -163 : -154 AACACGTATg Totally 5 motifs of 5 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATATH9 |LOCUS: AT2G40090 |PROD: ABC1 family protein, contains Pfam domain |complement(16744544..16747448) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.27 C - 0.27 1 accaaaatca taattagtaa tttagcctaa ctctatgaat tcataattcg 51 taaatacaca cactcgtagt tttcaaagaa tagtccaacg ccagacccat 101 tacaagcCCA ATaagtaagg cccacatcaa acaagatccg aatccgcatc 151 ttccgaacaa attgaacgca aatttagcct tgtcggaata aaccacttgt 201 TTTCGCTCGC TCGCTTTCTA TTTCTCCTCC GATCTGCTGA GGCGTGCGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.006 +strand -130 : -123 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: yippee family protein |LOCUS: AT2G40110 |PROD: the same as GENE |16755018..16756621 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +219 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.28 C - 0.13 1 ttatctgatc tcattataca tgtagatact atttgttgct tttacaacaa 51 ttgtagcaat gaaagaaaat tagaaattga agaaaatctt gaaatgaata 101 gacaaaggaa taaagaaagt gtaagaaaGC AATaaaataa acatgaatat 151 agaaaatgca attggcgaag agtacacgtt gttccacttt tctggagaaa 201 AAAGTGAATA ATTGAAGAAA AGACGTTATA CCTTCCCCAT CCACATTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.005 -strand -155 : -162 TGTAAAAG AC RSP01435 Mean Expected Number 0.000 +strand +34 : +43 TCCCCAtCCA Totally 2 motifs of 2 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: transferase family protein |LOCUS: AT2G40230 |PROD: the same as GENE |complement(16810170..16811819) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.50 G - 0.11 T - 0.19 C - 0.20 1 aaccaaaaaa aaaaaaaatt gccacaaaac tcaaatcaat gagaataagg 51 caacacgtac acacaagagt gaagagtaca tttgcacgat acaacacaca 101 acacaagaca caccacgtaa aaaaaaacaa agaacaccca aattacgaaa 151 ttaccctact tgtctcgata ctctatatac gtgagtatac aatcacatat 201 ATTTGTAACA GAAAACAAAG AGAAAAAGCA TATAATATAC ATTTATATAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00100 Mean Expected Number 0.007 +strand -40 : -35 TGTCTC AC RSP00203 Mean Expected Number 0.002 +strand -25 : -16 TATACGTgAG Totally 2 motifs of 2 different REs have been found Description of REs found 98. Group RE: AuxRE /Group TF: ARF /AC: RSP00100//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AuxRE /TF: ARF ||Identical REs AC: RSP00261 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protein kinase family protein |LOCUS: AT2G40270 |PROD: the same as GENE |complement(16829012..16831560) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 aaaagtttct gcagaaaagt ttaattttca taaaaataca aaaagaaaaa 51 cgttgattgg ttgagaaaaa tacgcacact tatttagttc ttcttgacca 101 ataaaataaa ataaaatctc ctaaaagtca agtttccTCA ATcgggcaaa 151 acacggcgga cgcgctttct tcaatcaaaa actcgtctgc taataagtct 201 CTTTTCGTCT TCAGCTTCTT CCGCTTTTTC TGATTGCTTC TCTGATCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.007 -strand -141 : -147 CCAATCA AC RSP01030 Mean Expected Number 0.009 -strand -191 : -198 AGAAACTT Totally 2 motifs of 2 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G40290 |PROD: the same as GENE |complement(16835844..16838132) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.31 C - 0.23 1 ccggtttaaa cgcaattcat gaataagcaa aggaaatcaa tccaaactta 51 cgttgtgaaa gaagttgggc cgaaaatgtc tgaaacccga ataggctttt 101 aacccctaac cccttgaaac tatcttgtgg cCCAATtaaa acctaattgt 151 ttaactgaca cggtgccgtt taacttggca tctttgacgc aagtcgactc 201 ATTTTCCGTT TGTGTTCCTT GCTCATTTCT TATCTCTAGA AACCTGTCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.006 +strand -58 : -48 CTAATTGTTTA AC RSP00447 Mean Expected Number 0.004 +strand -175 : -166 AGCAAAGgAA AC RSP01465 Mean Expected Number 0.000 -strand -65 : -75 ATTGGGCCACA Totally 3 motifs of 3 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G40430 |PROD: the same as GENE |complement(16886297..16889505) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.18 1 aagtgttatt gttgcaaaat gaaaaaaagt agtatataac caagaaaaaa 51 aaacaaaact aaatatatgt ggaaaggaaa atgaatgtac gtacgtcgta 101 ggaattaaaa agtatatggg cccattaaga ggaaatggag aaacgtaagg 151 cccattatgt ttctctctaa gccctacccc tagtgtgtgt cctcttcttc 201 AATCATCATC TTTTCGATAC CGAAGCAGCA ACCTTCGCGC CGCCGAGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00934 Mean Expected Number 0.002 -strand -135 : -144 ATATTTAGTT AC RSP01016 Mean Expected Number 0.003 -strand -37 : -44 AGAAACAT Totally 2 motifs of 2 different REs have been found Description of REs found 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G40470 |PROD: the same as GENE |complement(16909382..16910730) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.11 T - 0.38 C - 0.25 1 tctggctctc gagttaccaa atcctctttt catctccata agaaatttct 51 atcataagcc agctcatcta tcgatgtatg gacattggac acatgcatac 101 actcacacat acaaaataag tatatacatc gtgatcacta aatctttcac 151 ttggtatttt acttgccttt aaagccttcc ttggctatct tccttcgcac 201 CCTCTTTAAG AGTCACTTGA CTTTAATATT TCTCTTTTTG TTTCTTTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.008 -strand +33 : +22 AGAAaTATTAAA AC RSP01023 Mean Expected Number 0.002 +strand -70 : -63 GTGATCAC AC RSP01023 Mean Expected Number 0.002 -strand -63 : -70 GTGATCAC AC RSP01632 Mean Expected Number 0.002 +strand -34 : -24 CTTTAAAGCCT Totally 4 motifs of 3 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 948. Group RE: PI /AC: RSP01023//OS: Arabidopsis thaliana /GENE: GapB/RE: PI /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G40475 |PROD: the same as GENE |complement(16913989..16915206) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +325 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.30 C - 0.18 1 ctatattaaa ctcatttcga aatcaaaatt gatgtgtaaa tagtagtaac 51 aattaagtcg tatacactaa tgaacagtat aacgccccca ctcatttatt 101 atctaaccat tttttggccc tctACAATta ttttcgagta tcttatatat 151 atgtcatatg catccatgtg aaatttacca atacaaaaaa aaaaccccga 201 AAATAATACA GATACTACAA AAAAAATAAG AACAATAGAT TAAAATGCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.001 -strand -86 : -97 AAAAAAtGGTTA AC RSP00572 Mean Expected Number 0.009 +strand -52 : -45 ATATGTCA Totally 2 motifs of 2 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 40S ribosomal protein S26 (RPS26A) |LOCUS: AT2G40510 |PROD: the same as GENE |16925513..16926888 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.23 C - 0.17 1 tttttttttt tttttaattg atgaaagaag aaaaagaaga agaaagtctt 51 ctctagaaac aaaatccaat ttttggtcag aatgaaaaag tcactggcaa 101 tgtttattaa aaaaaaaaaa aaaaaaaata aagcccaagc ccactacatg 151 ttaaagccca agaagtaaca ataaagatca gctctcctct atcagagatt 201 AGACGAATGA GATCGGCAAC AAGAGCGTAA ACCCTAGCAG CAGACACAAC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pre-mRNA splicing factor PRP38 family protein |LOCUS: AT2G40650 |PROD: the same as GENE |complement(16970397..16972830) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.31 C - 0.21 1 gctgtaagaa aacacactgc aatttcttcg atagggtttt tgcttgatgt 51 aactaacggt cctaacggac ttccaactaa cggcgttatc tccatctata 101 atgggcctag atatattagc agcccattaa tatgttctta ctatgggctt 151 taccaccgaa agcaatcatt aataaaataa aataaatgaa ttaacttctc 201 AGATTCTTCA AAGACCTAGA GTGTCTTCGT CTTCGACGAC GGCAAATTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.010 +strand -44 : -38 CGAAAGC AC RSP00960 Mean Expected Number 0.007 +strand -127 : -120 CAACTAAC Totally 2 motifs of 2 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G40765 |PROD: the same as GENE |17019276..17020403 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.30 C - 0.15 1 atcatttgca ttgttacata cttacattaa agagtttaaa cgctaatcaa 51 tgaggcaatg atcttgaatt tttttaagca tatcggaaac aacgactaga 101 aacaacgact agaaacggcg cgttgttcaa gtgttaataa gtagaacggc 151 aggaagtgta aaattgacgt ttgactaggt caagaagctc ttttaatgtc 201 AAAAATTCCG CAGAATTGAT TATCGTCATT TCGTTAAGGA TCTCTGTGGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.006 +strand -30 : -21 TTGACTAGGt AC RSP00894 Mean Expected Number 0.007 -strand -131 : -138 AATTCAAG Totally 2 motifs of 2 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: FL3-27 |LOCUS: AT2G40880 |PROD: cysteine protease inhibitor, putative / cystatin |17064486..17065182 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.31 C - 0.23 1 aatgcatacc gttttcatgt gtttggaacg ctctcaaatt aatataaacc 51 acacacagcg tgccgctttt tgtttttctt atctctttga cctttcagag 101 agaacgaaac gcacagcctc tcaggtgaag acacgtgtca tttgttcctt 151 gacttgtcac tttcatacct taatcgccaa gtaacgtaaa agataccgac 201 ATGGCCAAAA CCTACGAATC TGAAATTTGA AGAAGCATAA GTTTGTCTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.002 +strand -71 : -62 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -62 : -71 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -71 : -62 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -62 : -71 GACACGTGtC AC RSP00524 Mean Expected Number 0.010 +strand -70 : -64 ACACGTG AC RSP01009 Mean Expected Number 0.001 +strand -7 : +2 TACCGACAT AC RSP01010 Mean Expected Number 0.002 +strand -7 : +2 TACCGACAT AC RSP01035 Mean Expected Number 0.010 -strand -65 : -71 ACGTGTC AC RSP01086 Mean Expected Number 0.006 -strand -11 : -20 TTTACGTTaC AC RSP01256 Mean Expected Number 0.003 +strand -70 : -63 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -63 : -70 ACACGTGT AC RSP01598 Mean Expected Number 0.008 +strand -65 : -58 TGTCATTT Totally 12 motifs of 9 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 934. Group TF: DREB1A; DREB2A /AC: RSP01009//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB1A/DREB2A BS /TF: DREB1A; DREB2A ||Identical REs AC: RSP01610 RSP01763 RSP01771 RSP01779 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: WW domain-containing protein |LOCUS: AT2G41020 |PROD: the same as GENE |17124343..17128172 |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.36 C - 0.23 1 cattacttca aactttccac aatagtcttg taaatttatc cccacatgat 51 gtctgttaac aatccattat ttcaaacttt ccacaataat cttataaacc 101 aagatagagc caaactttag cttccatttt tatttcttcg gtttatgatc 151 tctacttgac cagccagtta atatatgggc ttgggcctta tgggcctaat 201 TGCTTATCGC AGAAATTATC TAGGGCTCGG ATTCCGATTC TCTCTGTGAC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: EEL |LOCUS: AT2G41070 |PROD: basic leucine zipper transcription factor (BZIP12) |17137852..17139464 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +475 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.42 C - 0.13 1 tttgattttt tgtaagattc gaatattagg tttattattc gtagggaata 51 aacttacttt caaaagcgtt cataagttaa tactttcata tatgatcata 101 agtacggaca ctATTGTttt ttgtttgttt gtgtttattc taaaagaaag 151 tagcttttaa ttgaaatgtc ctcagaggca cagtttaaag ttcgagtgta 201 ACAGTTTCTA AGGCAAAATA AGCTCTCTTT CTACTATTTC TCTTTCTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.003 -strand +47 : +39 AGAAAGAGA AC RSP00861 Mean Expected Number 0.003 -strand +32 : +24 AGAAAGAGA AC RSP01055 Mean Expected Number 0.001 -strand +5 : -6 ACtGTTACACT Totally 3 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 975. Group TF: GT-3a /AC: RSP01055//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (2) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G41350 |PROD: the same as GENE |17238419..17240632 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.36 C - 0.16 1 tgtcattact atcatttcac aggttaacac ttttaatgct tccaaaccat 51 ttaacaaatg atatgagagc attaaaattt tgagatttgt tgttaattgt 101 tagtcacaaa gaatattatg agaattttaa accaacaaaa aaaactttat 151 gagaaattgg ccttttttga attaactgtt atattcaaaa tccgccaata 201 ACATCGCTCT AATTATCTCT CTTTCCCAAA TCTGGAAAAT TTAGGGTTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.007 +strand +40 : +46 TTTAGGG AC RSP00943 Mean Expected Number 0.009 +strand -189 : -179 TCATTTCACAg AC RSP01304 Mean Expected Number 0.001 -strand +50 : +41 gGAACCCTAA AC RSP01596 Mean Expected Number 0.009 -strand -179 : -189 cTGTGAAATGA Totally 4 motifs of 4 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: calmodulin, putative |LOCUS: AT2G41410 |PROD: the same as GENE |complement(17268806..17269962) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.28 C - 0.14 1 tgaaattatt ttaaaaatgg caaatgtata acaaaaaaaa cggaaataaa 51 tattttaaca aaggaaatga attagtcata ttagtaataa aattccatat 101 aaaataagat agccctaaaa taaaagaaga atgaaaatga atgaatgata 151 gtgttggagg tgtataagta tcaaataaaa caccaaacca cttctctcct 201 AGGAAGCTTC GTGGAAGCTG CCATGGCTTC TCTCTTTCTC TCCCCATTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00778 Mean Expected Number 0.005 +strand -63 : -54 TGAATGAATG AC RSP00861 Mean Expected Number 0.000 -strand +39 : +31 AGAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: GPT |LOCUS: AT2G41490 |PROD: |17308773..17311289 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.21 T - 0.31 C - 0.16 1 atttatgcat ttttttctta aaaaaagaga gttctataag tataatccaa 51 gatatattct tgtacttaat acgaataatt aaagttatga ttaatccata 101 aagttctatt tcgatgacac ggtgtcgtat ttgaagcgac gtggcaaatc 151 cttattggtc tatatgacgc agaacgggaa ttgctctgaa gaatcctttc 201 TCAGGCGAAC GGAGTTTGGA GTCAAAATCC AGAGCGCGGG GAAACGAAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -65 : -56 GCgACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -56 : -65 GCCACGTcGC AC RSP00405 Mean Expected Number 0.006 +strand +15 : +22 TTTGGAGT AC RSP00445 Mean Expected Number 0.001 +strand -180 : -171 AAAAAAGAGA AC RSP00913 Mean Expected Number 0.004 +strand -88 : -79 GATGACACGG AC RSP00986 Mean Expected Number 0.001 -strand -57 : -64 CCACGTCG AC RSP01034 Mean Expected Number 0.005 +strand -62 : -56 ACGTGGC Totally 7 motifs of 6 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 40S ribosomal protein S2 (RPS2C) |LOCUS: AT2G41840 |PROD: the same as GENE |complement(17466879..17468617) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.37 C - 0.16 1 ttcttgagat ttgttgtttt atttgtattc ttacatacta aattgtttat 51 ctaaagttat atgaataaag ggatacattc tttataaggt tatggacctt 101 atggtattat ttgttctgat taacgtgtga cattagaatg tcaggcccat 151 ttaagcccac tttctgttta agttaccaaa acaaacccaa caaggccttt 201 AGAAACCCTA AAAATCCTTA TTGTAGCAGC TGGAGCAATA TATATCCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +11 : +3 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +3 : +11 AAACCCTAA AC RSP00872 Mean Expected Number 0.009 +strand -77 : -68 cGTGTGACAT AC RSP01214 Mean Expected Number 0.001 -strand -6 : -15 CCTTGTTGGG AC RSP01303 Mean Expected Number 0.003 +strand +2 : +11 gAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G42040 |PROD: the same as GENE |17550112..17552308 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +248 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.33 C - 0.15 1 catttccatt gttaccaaat atgtaaataa aaaattaaca gtgcatctaa 51 aaaatggttt tatcgttttg taattctaat caggcacatg ttatcaatta 101 tcacatttTC AATaaaaact ttatattgaa atatcagtca ttcctacgtg 151 agctcttcct ctctcaatat actactactt acttgctttt tgggtgcaac 201 AAAAACAAAA AAAGTTAGAG ATAGAGAGAG ATAAAAAAGA GTTAATAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.006 +strand -189 : -174 TTACCAAATATGtAAA AC RSP00080 Mean Expected Number 0.006 -strand -174 : -189 TTTaCATATTTGGTAA AC RSP00144 Mean Expected Number 0.005 -strand -5 : -10 CACCCA AC RSP00530 Mean Expected Number 0.008 -strand +40 : +29 TCTTTTTTAtCT AC RSP00751 Mean Expected Number 0.001 -strand -132 : -143 AAAaCGATAAAA AC RSP00863 Mean Expected Number 0.001 -strand -37 : -45 AGAGAGGAA AC RSP00864 Mean Expected Number 0.000 +strand +23 : +31 AGAGAGAGA Totally 7 motifs of 6 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein, ; similar to GP|9826|X07453 |LOCUS: AT2G42190 |PROD: the same as GENE |17589947..17591272 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +756 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.26 T - 0.27 C - 0.19 1 gagactagag ttggagagca ccacctaaat cgtaacagta agaagatgat 51 catgtgtggg agggagtgag aaacacgcgc cgatagagag cgtgtggatt 101 agttaggatg agaaaatccg tatcccatct tcaacggggc aaaagaagat 151 ccatcggcca atggacttgg tttataggat ggtggtggta agtgtgtgct 201 ACTCTACTTA TTAGCAAACT ACTCTCTCTT TTTCCTCTTT CTCAGATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.004 -strand +34 : +25 gAAAAAGAGA AC RSP00523 Mean Expected Number 0.009 +strand -128 : -122 ACACGCG Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: rhodanese-like domain-containing protein |LOCUS: AT2G42220 |PROD: the same as GENE |17599167..17600783 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.29 C - 0.19 1 gatttgaaca tgacaagcat aaggaaacaa acatgtaaca tgtataacaa 51 tcagatgata tggatttgga gatctacatg taaaagtaga gtgaatacgt 101 ggcaataact cATTGGctat cttaaatttc cttgtggtat ggctaatcta 151 gtggttcttg tccaagtaac tatcgcatca cagtgacgag tttttttcct 201 AGAGACCTCT GCTGCAATGG CGGGGATCAT AAGCCCTAGC CCTACGGCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 +strand -122 : -115 TGTAAAAG AC RSP00043 Mean Expected Number 0.002 +strand -105 : -98 TACGTGGC AC RSP00064 Mean Expected Number 0.005 +strand -107 : -98 AaTACGTGGC AC RSP00819 Mean Expected Number 0.003 -strand -98 : -107 GCCACGTaTT AC RSP00913 Mean Expected Number 0.004 +strand -147 : -138 GATGATATGG AC RSP00914 Mean Expected Number 0.005 +strand -147 : -138 GATGATATGG AC RSP00915 Mean Expected Number 0.004 +strand -147 : -138 GATGATATGG AC RSP01034 Mean Expected Number 0.008 +strand -104 : -98 ACGTGGC Totally 8 motifs of 8 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: protein kinase C substrate, heavy chain-related |LOCUS: AT2G42390 |PROD: the same as GENE |complement(17658331..17659666) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.32 C - 0.17 1 aaattaattt agtttattaa tcaagaatta aatcaagttt taataataac 51 ctgaattgta gatttttttt cttttcttaa tagtcgaata ctgaacactg 101 tagtattaaa tgaaaactca aagcCCAATa taattcaaag cccatcgaat 151 caaatatctg gccactccac ttattcttaa cttgaaactt aaaagccgaa 201 ATCGTAAAGA GAGAATCTGG TCGGAATAAT CCACTCGAAT CTTAAAACGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00888 Mean Expected Number 0.005 -strand -134 : -142 AAAAATCTA AC RSP01687 Mean Expected Number 0.006 -strand -3 : -9 CGGCTTT Totally 2 motifs of 2 different REs have been found Description of REs found 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: GRF9 |LOCUS: AT2G42590 |PROD: |complement(17738933..17741045) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +192 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.29 C - 0.16 1 ttaattcctt ctaatgttat atagtccatt atttgaataa aatataaaat 51 tgtgctgaga agataaagta caattaaaat gagtggactg gtggatagag 101 agtgatgaca tgtcatgata tggttagaca gagaagaacc aaatggatcc 151 cacgaggaat aatataatga ataaaatcac ttactgacac agaccattga 201 GTAGTAATTA CCCCGTTTAA CCCGCGTTAA TTACGCTTGT GTCCCTACGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.005 +strand -94 : -85 GACATGTCAT AC RSP00460 Mean Expected Number 0.005 -strand -87 : -96 GACATGTCAT AC RSP00858 Mean Expected Number 0.007 -strand +12 : +5 GGTAATTA AC RSP00913 Mean Expected Number 0.004 +strand -97 : -88 GATGACATGT AC RSP00997 Mean Expected Number 0.003 +strand -97 : -88 GATGACATGT Totally 5 motifs of 4 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G42670 |PROD: the same as GENE |complement(17778901..17781481) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +704 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.43 C - 0.15 1 tttgttggta ttagaaaaga gttggtatgt cgtttatttt gcaattttag 51 ttaccaaggg gtgatttagt aaattagtaa atggggtcca agttgagaag 101 aaatatctcg tggcacaaat ggcaacaaaa ttaaaaatAT TGGattctct 151 tttaattttt tactcttttt tactctagag ccttgttgtt cttcttcttc 201 TTCTTTCTTC GTCTTCAACT TCTTCTACCG AGATTGATTC TATTTCTTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.002 -strand -60 : -71 AATATTTTTAAT AC RSP00421 Mean Expected Number 0.003 +strand +27 : +33 ACCGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ethylene-responsive transcriptional coactivator |LOCUS: AT2G42680 |PROD: the same as GENE |17781980..17783387 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.34 C - 0.16 1 atgtacaaag cttaaaattg gtgataaaaa ttcaaaatac aaatttttga 51 tagtactttc cccttgattc tttagataaa aaggtttatg taattttgtt 101 aaaCCAATta ttatcttaga aaaataaaaa aaaaaagtag cgtgaagctc 151 acgcacggct tttgctattt tattcccagt tttctctcat attcttttct 201 AACTTGTCAC CTGCAGAGAA AGAAAGAAGC CCTAGATTTT GTCAAAAGGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00508 Mean Expected Number 0.002 -strand -168 : -179 GaATTTTTATCA AC RSP00530 Mean Expected Number 0.004 +strand -8 : +4 TCTTTTcTAACT AC RSP00860 Mean Expected Number 0.004 +strand +17 : +25 AGAAAGAAA AC RSP00953 Mean Expected Number 0.009 +strand -96 : -88 CAATTATTA AC RSP01201 Mean Expected Number 0.002 +strand -58 : -51 TGAAGCTC AC RSP01687 Mean Expected Number 0.005 +strand -45 : -39 CGGCTTT Totally 6 motifs of 6 different REs have been found Description of REs found 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G42750 |PROD: the same as GENE |17800384..17802757 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.29 C - 0.25 1 tggcgggtag ttgaagcgtg tggagacata taaatccact agctgacacg 51 tgccacggac ggctaagcac gctttcgccg atcgccgatc gccgctagat 101 tcatctcgga ttcctccaaa taagcttccc tggttcttat cttgccacgt 151 cagcatttct ccctcgtacg ccttaaattc ttcacaaaaa taataaaaat 201 ATTAATTCAA ATAAATGTTC ATCTTCTCCT ACGAATGAAA TTGAAATTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.003 +strand -11 : -3 ATAATAAAA AC RSP00049 Mean Expected Number 0.003 -strand -147 : -156 gGCACGTGTC AC RSP00113 Mean Expected Number 0.001 -strand -49 : -57 TGACGTGGC AC RSP00125 Mean Expected Number 0.001 -strand +3 : -9 AATATTTTTATT AC RSP00135 Mean Expected Number 0.001 -strand +3 : -9 AATATTTTTATt AC RSP00204 Mean Expected Number 0.002 +strand -156 : -147 GACACGTGcC AC RSP00208 Mean Expected Number 0.000 +strand -57 : -46 GCCACGTCAGCa AC RSP00214 Mean Expected Number 0.004 -strand -49 : -56 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -56 : -49 CCACGTCA AC RSP00219 Mean Expected Number 0.000 +strand -157 : -146 TGACACGTGcCA AC RSP00227 Mean Expected Number 0.002 -strand -58 : -66 AAGATAAGA AC RSP00247 Mean Expected Number 0.005 +strand -57 : -48 GCCACGTcAG AC RSP00248 Mean Expected Number 0.004 +strand -57 : -48 GCCACGTCAG AC RSP00936 Mean Expected Number 0.000 -strand -146 : -157 TGgCACGTGTCA AC RSP01034 Mean Expected Number 0.010 -strand -51 : -57 ACGTGGC AC RSP01058 Mean Expected Number 0.007 -strand -160 : -167 TAGTGGAT AC RSP01152 Mean Expected Number 0.004 +strand -156 : -147 gACACGTGCC AC RSP01280 Mean Expected Number 0.001 -strand -47 : -57 GcTGACGTGGC AC RSP01642 Mean Expected Number 0.004 -strand -170 : -179 AtATGTCTCC AC RSP01656 Mean Expected Number 0.000 -strand -47 : -58 gCTGACGTGGCA Totally 20 motifs of 20 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G42780 |PROD: the same as GENE |17807590..17809893 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +524 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.27 C - 0.20 1 gttcacgtga aaccggtgaa ggcgcgatca gacaggcgcg gtggttaata 51 aataagttaa taacttactc gttactaggg ccgataatcg tggttttgaa 101 cgcgcgttta cgagaattgc gttagCCAAT tgtattcatc atcatcatcg 151 tcatcatcgt tggggtgagt atacatacga ttaaagaaac ccaaaaactc 201 CGGCGTCTGT TTACCGCTAT CATCATTCTT CCGGGAAGAG GAAAAGGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01221 Mean Expected Number 0.005 -strand -154 : -161 TAACCACC AC RSP01236 Mean Expected Number 0.009 +strand -56 : -47 TCATcGTCAT AC RSP01776 Mean Expected Number 0.004 +strand -24 : -14 ACgATTAAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G42910 |PROD: the same as GENE |17863345..17865674 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.31 C - 0.12 1 atcagatttt tgataccgag atttctcttc tctattgatt tgatagagtt 51 tgggaaggtt ttcaaatatc aaagaatgga aataatgaca acattaatgg 101 aaatacattc agtaaacagt acctaaagtt ttatttttat ttgaaattaa 151 aataaagata aacgtatcat ttacagattt ggggtacaga aataaagtgc 201 AAGGAATCAA AATTGTCAGC CGAACAACAA AAAAAACAAG GGCTTTTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.007 +strand -186 : -180 ACCGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ribosomal protein L3 family protein |LOCUS: AT2G43030 |PROD: the same as GENE |17901913..17902943 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.31 C - 0.15 1 tattttcttt tctcacttgt gctaactaat ataaacacca atcttgaaag 51 aggttaaatt gaatacaata agaagaaaaa atacaaaatg aataaaatca 101 gatttaaagg accgatgttg caaaaggtaa accaccgtgt tttgtaaata 151 tgagtatctt cagcggtata ataataaatt tcataactgg agaagaagat 201 AAGAGTGTGG CACAGAGCTT TATCCTCTCT CAGAGTTTCT TCTCCTCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.006 +strand -5 : +4 AAGATAAGA AC RSP00961 Mean Expected Number 0.006 +strand -82 : -75 TGCAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: aconitase C-terminal domain-containing protein |LOCUS: AT2G43090 |PROD: the same as GENE |17926004..17927506 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.29 C - 0.18 1 acgtaaatca atatgaatgt gttttacatt ttaacctctc caacaaattc 51 taaattactg ttagcatata actgacacag aaaacaatta ctgttacaaa 101 agaattaact atcatttcac cgaaataacg aaggagagtg gcattttggt 151 aaataagaac aaagtctcta tttataatcg cattttggtt gacttgcttc 201 AATCTTGACC ACAGCAAAGA GAAACAAACA ATGGCGGCTT CTCTGCAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 -strand +39 : +33 AGCCGCC AC RSP00438 Mean Expected Number 0.003 +strand +33 : +38 GGCGGC AC RSP00807 Mean Expected Number 0.003 -strand +38 : +33 GCCGCC AC RSP01011 Mean Expected Number 0.000 -strand +39 : +31 AGCCGCCAT AC RSP01080 Mean Expected Number 0.000 -strand -62 : -73 ACTCtCCTTCGT Totally 5 motifs of 5 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP 998. Group TF: DcMYB1 /AC: RSP01080//OS: Daucus carota /GENE: DcPAL1/RE: box-L2 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ribonuclease P family protein |LOCUS: AT2G43190 |PROD: the same as GENE |17963062..17965118 |SUPPORT | 8 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +235 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.26 C - 0.20 1 aaggattcac ttctgttcgg taaaagaaag aaacagaaat tgatcaaaag 51 aaagaagttg gacaaaccga aacaacaaga accagaccga accagattta 101 ataattaaaa aaaaaaaaaa ccatgtcacg tgagcttttt tagggttcac 151 gtgatcatct ctatcgtcga aatacaagcg gcggacttca aaatcataac 201 TTTTTTCTTC GCTCCTCTCT TAGCATCGCC GTGAATCGTT GGTCTCAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.008 +strand -62 : -56 TTTAGGG AC RSP00860 Mean Expected Number 0.007 +strand -176 : -168 AGAAAGAAA AC RSP01209 Mean Expected Number 0.002 +strand -66 : -57 CTTTTTTAGG AC RSP01303 Mean Expected Number 0.002 -strand -52 : -61 TgAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -52 : -61 TGAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATGPX3 |LOCUS: AT2G43350 |PROD: glutathione peroxidase, putative |complement(18015720..18017677) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.32 C - 0.18 1 gatgtctaga tttctcatct gaaagtaaac ttattattct agagtgtcat 51 gaaaattgaa gagaaaagtt gcaattaaat ctctcaaggc tgagatgggc 101 tttaaattag gcgtaaactt atcaactaga ttttggccca tgttaagccc 151 attaaagctt caaacactat ccaagtcaac aagcttgttc tgttctgttc 201 TGACTTCTGA GATCGTCTTG TTCACCAAAG AGAAGAAGAC TAACTGTGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.005 -strand -22 : -31 TTGACTTGGA Totally 1 motifs of 1 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L38 (RPL38A) |LOCUS: AT2G43460 |PROD: the same as GENE |complement(18053081..18054478) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.23 T - 0.33 C - 0.12 1 tttttttcta agaaggattt tgtggttgat cttgttatga ttagggtatg 51 aaaagaaaat atgaggacca aagtgttaag acaaactgta aattgggcaa 101 aactgtgaag ggacattaaa gcgatatatg ATTGGgcctt aaagcccatt 151 gtttgataaa tcgtccagag ggtaaatatg gaatttcagg tttacgaatt 201 AGGGCTTCTT GATACAAAGT TTTTAAGAGA TCTCTTTATA TCCTCGCGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00559 Mean Expected Number 0.006 +strand -22 : -12 TGgAATTTCAG AC RSP00613 Mean Expected Number 0.008 -strand +13 : +6 ATCAAGAA Totally 2 motifs of 2 different REs have been found Description of REs found 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G43540 |PROD: the same as GENE |18079448..18080040 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.20 T - 0.28 C - 0.12 1 ttatcatata gtagatagta aattagtgtg ttctgtcgta aaaaaatatt 51 aaataatgtg ttccaaatga tcataaatca tgtacgacaa aaagaaagtc 101 ataaagcgtc cgattaattt atggctaaat ccaacggtta gaaattaact 151 tcaatttggt gacgtgtgaa caacaagatc aatagattct cggtgagaag 201 AAAATAAAAG AAAAATGGGG ATATCGGGTT CAAAGCGAGT TACGACGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.001 -strand -33 : -40 CACACGTC AC RSP00421 Mean Expected Number 0.003 -strand -7 : -13 ACCGAGA AC RSP00698 Mean Expected Number 0.004 -strand -80 : -90 TaAATTAATCG AC RSP00997 Mean Expected Number 0.003 +strand -43 : -34 GGTGACGTGT AC RSP01183 Mean Expected Number 0.001 -strand -181 : -193 TACTATCTACtAT AC RSP01258 Mean Expected Number 0.002 +strand -41 : -34 TGACGTGT AC RSP01654 Mean Expected Number 0.006 +strand -43 : -34 GGTGACGTGT Totally 7 motifs of 7 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1095. Group RE: TacPyAT module /AC: RSP01183//OS: Petunia hybrida /GENE: chsA/RE: TacPyAT module /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: OASB |LOCUS: AT2G43750 |PROD: cysteine synthase |complement(18136488..18139629) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +230 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.29 C - 0.15 1 tacccagaaa ttaaaagaag gcaaagaaca aaaagagatc cagaaagatt 51 ttatctgacc tttgagagtt tggtagggct gcatgatgaa gaagaacatg 101 tgctctatat tcaccttctt gttggatcag actagtaggt tggtgagatt 151 gtaaaaaaca aaactttact aattcaattt caaagtctct tcttttctcc 201 AGATACTCTG TTTTACCATT CAAGGAAAAA GGATAAATCT TGTAGAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand +13 : +28 TTACCATTcAAGGAAA AC RSP00080 Mean Expected Number 0.004 -strand +28 : +13 TTTCCTTgAATGGTAA AC RSP00286 Mean Expected Number 0.002 -strand -53 : -63 TCTCACCaACC AC RSP00950 Mean Expected Number 0.001 -strand -54 : -64 CTCACCAACCt AC RSP01044 Mean Expected Number 0.000 -strand -53 : -64 TCTCACCAACCt AC RSP01083 Mean Expected Number 0.000 -strand -53 : -64 TCTCACCAACCt AC RSP01454 Mean Expected Number 0.008 -strand -57 : -63 ACCAACC AC RSP01600 Mean Expected Number 0.009 +strand -23 : -16 TTTCAAAG Totally 8 motifs of 7 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G43820 |PROD: the same as GENE |18159304..18160985 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.33 C - 0.16 1 tattaacaca ttttctttcc ttgtcaaaga catgcaaatt ggttttgttt 51 tcttattccc attttttttt tataataaaa agaagaagag taaaacaaaa 101 aaactatcat ttcttcttat cgcaaaactc ttatctaagc aagaaaccga 151 caaaacctat atctacatat attctcatca acatctcttg agacatattc 201 ATTTTGGTTA AAGCAAAAGA TTTTAAGAGA GAAAGGGGGA GAAGTGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.005 -strand -174 : -183 TTGACAAGGA AC RSP00716 Mean Expected Number 0.001 -strand -154 : -162 CAAAACCAA AC RSP00751 Mean Expected Number 0.003 +strand -57 : -46 AAACCGAcAAAA AC RSP01105 Mean Expected Number 0.004 -strand +39 : +34 CCCCCT Totally 4 motifs of 4 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: thiol methyltransferase, putative |LOCUS: AT2G43910 |PROD: the same as GENE |complement(18191557..18194101) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.32 C - 0.16 1 ctacgtgttc caatgagaga acacacaaaa tgagcacaaa gtatagaggt 51 tgaaacacac aataatatag ctttatacaa agtcacttta ttcaattatt 101 gtattttaat tcacaatTCA ATtattgttt tataaattga atatagtaat 151 tcaatttgct atcctctata tagatagata tcatgtgctt atagctttcc 201 ACAACTTCAA GACCCCCAAA AAATATCAAA GTGTCATTAA TAGAAAGACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01060 Mean Expected Number 0.007 +strand -108 : -100 CAATTATTG AC RSP01060 Mean Expected Number 0.007 +strand -82 : -74 CAATTATTG AC RSP01060 Mean Expected Number 0.007 -strand -74 : -82 CAATAATTG AC RSP01060 Mean Expected Number 0.007 -strand -100 : -108 CAATAATTG AC RSP01077 Mean Expected Number 0.003 -strand -74 : -82 CAATAATTG AC RSP01077 Mean Expected Number 0.003 -strand -100 : -108 CAATAATTG AC RSP01094 Mean Expected Number 0.005 -strand -103 : -114 TAATTGaATAAA AC RSP01260 Mean Expected Number 0.001 +strand -200 : -193 CTACGTGT Totally 8 motifs of 4 different REs have been found Description of REs found 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ribosomal protein L2 family protein |LOCUS: AT2G44065 |PROD: the same as GENE |18235549..18238483 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +387 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.19 T - 0.35 C - 0.22 1 aaaatttaat ctcaagtgat tctacaatgg agacgtttat tacatacgtg 51 ctctgttctt cctttctcgc gcctgcacat ggtgtagaaa acactgatag 101 aacgagctgg gcctatctag tgggtttggt gtATTGGgct tgtattaatg 151 aattgggcct gtcttctcga ttttaattaa aacaattagg catttaggct 201 CTCTCTCACA CACCCATAGT CGTCTTCCTC GATCAGTCTC TCTCTCAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.003 -strand -12 : -22 CTAATTGTTTt AC RSP00862 Mean Expected Number 0.004 -strand -134 : -142 AGAAAGGAA AC RSP00864 Mean Expected Number 0.003 -strand +45 : +37 AGAGAGAGA Totally 3 motifs of 3 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATGDI1 |LOCUS: AT2G44100 |PROD: Rab GDP dissociation inhibitor (GDI1) |18248768..18252187 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.34 C - 0.16 1 ttgttttaga aaatgctaat tgaattatta gattgcttca gacagcaaaa 51 acattattgt aaatctattt attacacaca caaaattact tttaagtttt 101 acttggtaat aatatttaga tttatccaaa ttTCAATagc caaataagaa 151 aaaaaaaaga gaaaaagcat ataagaaaga aagcatcttt ggacttgtct 201 GATTTTCTCT ATAGACGCAA TCACCGCCGA TTCTCTCTCT CTCTCTCTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand -48 : -39 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.004 +strand -27 : -19 AGAAAGAAA AC RSP00864 Mean Expected Number 0.001 -strand +48 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +46 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +44 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +42 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +40 : +32 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +49 : +33 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +47 : +31 GAGAGAGAGAGAGAGAA Totally 9 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L7 (RPL7C) |LOCUS: AT2G44120 |PROD: the same as GENE |complement(18256118..18257906) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +291 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.28 C - 0.20 1 gaaaaacagt attggtggaa gaaagtattc agaagggcaa aatcgatgac 51 atgtagatgt agatggacaa ggcctgagta tgtatatgtc atttaaaacc 101 aagcCCAATt taagttaaat aaataggccc actttggaaa aatgactgct 151 gactaaaaaa ttagggttac gaaataaacc ctaaacccag tttcgacttt 201 GTTTGTTTTG TCCTCCTTCT ACGCCGCACA CTATCTCTTC CTCTCTCTCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.007 +strand -153 : -144 GACAtGTAGA AC RSP00211 Mean Expected Number 0.008 -strand -37 : -47 CTAATTtTTTA AC RSP00279 Mean Expected Number 0.002 -strand -17 : -25 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -25 : -17 AAACCCTAA AC RSP00460 Mean Expected Number 0.005 -strand -146 : -155 tACATGTCAT AC RSP00572 Mean Expected Number 0.008 +strand -117 : -110 ATATGTCA AC RSP00863 Mean Expected Number 0.001 -strand +46 : +38 AGAGAGGAA AC RSP00913 Mean Expected Number 0.003 +strand -156 : -147 GATGACATGT AC RSP00997 Mean Expected Number 0.003 +strand -156 : -147 GATGACATGT AC RSP01303 Mean Expected Number 0.005 +strand -26 : -17 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -26 : -17 TaAACCCTAA AC RSP01598 Mean Expected Number 0.005 +strand -114 : -107 TGTCATTT Totally 12 motifs of 12 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: kelch repeat-containing F-box family protein |LOCUS: AT2G44130 |PROD: the same as GENE |18260686..18262130 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.37 C - 0.21 1 aaagggaatg attaagaaat aaatttttag atacgtttgc gttttgcaac 51 atacacgaat cttgattttt ttcatacgct gctaaatcaa gtttataggg 101 gtttttaaaa atttaaacga accgtcgcgt tatttcaacc gcaagcaaac 151 tcatcctcct ctttccctat ttaaaggctc tgccacctct ttgtagcttc 201 ACACTCACTC AAATTTAAAT CGCAACTTTC GTCAGTTTTT GTGTGTTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00132 Mean Expected Number 0.001 +strand -19 : -12 GCCACCTC AC RSP00255 Mean Expected Number 0.002 +strand -52 : -44 ACTCATCCT AC RSP00734 Mean Expected Number 0.003 -strand -155 : -162 CAAAACGC AC RSP01458 Mean Expected Number 0.002 +strand -98 : -86 tTTTAAAAATTTA AC RSP01458 Mean Expected Number 0.003 -strand -169 : -181 ATcTAAAAATTTA AC RSP01767 Mean Expected Number 0.008 +strand -95 : -87 TAAAAATTT Totally 6 motifs of 5 different REs have been found Description of REs found 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G44210 |PROD: the same as GENE |18287699..18289952 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.32 C - 0.14 1 aaggagtaga atgttccagt tcagtaaaat ttcacttttt ctataaaggt 51 gacagtaata aaataagata ctctttttta ttttaaaaaa aaaccttcga 101 atttttccag aaaagaatct gacaaaaata aaatgaacag agaaaagaaa 151 gcaaccaatc ttatgcaata gaatccaaaa attcacttgt ctctattttt 201 TAAAAATGGG TCCTTTTTAT GAAGGTTTTG CCAAAGTGTC ATTAGTGCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 -strand -122 : -131 AAAAAAGAGt AC RSP01601 Mean Expected Number 0.007 +strand -171 : -164 TTTCACTT AC RSP01641 Mean Expected Number 0.002 +strand -16 : -7 aCTTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: calcium-binding EF hand family protein |LOCUS: AT2G44310 |PROD: the same as GENE |18316288..18316902 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.36 C - 0.21 1 aattttctac aatcatagat tcaatttcag cgtctactgc cagccagtct 51 taactcatgc aaatcaaccc aataattttt tgttattcat tcatggacca 101 ttagtatatt ttcaaaggcC CAATaaaatt aaaaccttgg tttctgacgg 151 gcccaatatt tagagattct tatcttcacc gactgaaact tgtttatgcg 201 GTTCCCGATT TATCAATGCG GCAAATCTAT CTTTCTTTAT TTTAATAAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.001 -strand +25 : +18 TTTGCCGC AC RSP00227 Mean Expected Number 0.007 -strand -25 : -33 AAGATAAGA AC RSP01068 Mean Expected Number 0.010 +strand -58 : -50 TCTGACGGG AC RSP01600 Mean Expected Number 0.008 +strand -91 : -84 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ATCS |LOCUS: AT2G44350 |PROD: citrate synthase, mitochondrial, putative |18323354..18328158 |SUPPORT | 20 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +395 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.21 1 aaataaatga tgattatcaa caattgccga aaataaccac accggtacac 51 cgaaattgtt tttgagattc ataaaaccgg aataatacgc ctaaaggtta 101 ttttctCCAA Taccggttta gtttggtttg ccttctcaaa gtactcgaag 151 gtcaaaattg gaatttagta ataaacctgc tccagctata tacaaatgtc 201 ATTTGCTCAC CTTTCGCCGA TTGATTTTGT ACATCACACG CAGACGCAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00745 Mean Expected Number 0.001 +strand -109 : -98 tAAAGGTTATTT AC RSP01598 Mean Expected Number 0.007 +strand -4 : +4 TGTCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G44420 |PROD: the same as GENE |18337549..18339985 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.37 C - 0.13 1 tatcatatct ttgttttttt tttgggaaaa taatttaact tgatatcctg 51 aagtgtttga tttcaacaag tatatttctt atacatctta aacttatggg 101 gttagtttat tagaaggaaa aaatactagg ggtaaattcG CAATttaaaa 151 taagattctc gtcttatgga aaaacgtcac gctgttttac cctagaaact 201 GAAACGGAAC GTAATTATTT ACGTGACTTA TGAAAAGTCA TCGGCGATTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00593 Mean Expected Number 0.003 -strand -43 : -51 GAATCTTAT AC RSP01031 Mean Expected Number 0.010 -strand -42 : -49 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: RAB6 |LOCUS: AT2G44610 |PROD: Ras-related GTP-binding protein, putative |complement(18418507..18421149) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +190 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.28 C - 0.19 1 agagagacac agaagagtca agtagccaaa aggggcaaaa atagttcagg 51 tcatacgaga tgacacgtgc cccctactat aaggctagcc caaatcctta 101 cgtgggctta taaatgctgc ccataatgta gtaaattcct taatcagctt 151 ctaagttttt atatattttg taacttatct caaatagttt ctaatttaac 201 ATAAATGACC CAATTGGGTC ACTCGAGGAA TAAACTGCAA TTTACGAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 -strand -130 : -139 gGCACGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -139 : -130 GACACGTGcC AC RSP00247 Mean Expected Number 0.003 -strand -95 : -104 cCCACGTAAG AC RSP00524 Mean Expected Number 0.010 +strand -138 : -132 ACACGTG AC RSP00891 Mean Expected Number 0.005 -strand -32 : -40 AAAATATAT AC RSP01035 Mean Expected Number 0.010 -strand -133 : -139 ACGTGTC AC RSP01152 Mean Expected Number 0.002 +strand -139 : -130 gACACGTGCC AC RSP01640 Mean Expected Number 0.007 -strand -189 : -198 CTgTGTCTCT Totally 8 motifs of 8 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: WRKY family transcription factor |LOCUS: AT2G44745 |PROD: the same as GENE |complement(18454348..18456084) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +5 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.20 T - 0.25 C - 0.14 1 aatatgtttg gagggtcttt gacacgtgtg gggacataca cacgaagccc 51 taccctttct atacgaaagc aagagaagat aaaccgtcaa agtaacattt 101 aaaacattat taatttatat agaaataaat tagtgtcata cactatttta 151 aattggtaca aaatagtcaa caaaaaggaa caaggagaga ttgagattaa 201 AAACAATGGA AGGAGGAGGG AGAAGAGTAT TCAGTAATTA CGATCTACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 -strand -171 : -180 CaCACGTGTC AC RSP00524 Mean Expected Number 0.008 +strand -179 : -173 ACACGTG AC RSP00524 Mean Expected Number 0.005 -strand -172 : -178 ACACGTG AC RSP00949 Mean Expected Number 0.004 +strand -37 : -30 TAGTCAAC AC RSP01035 Mean Expected Number 0.008 -strand -174 : -180 ACGTGTC AC RSP01039 Mean Expected Number 0.009 -strand -142 : -147 GAAAGG AC RSP01056 Mean Expected Number 0.007 -strand -102 : -112 AATGTTACTTT AC RSP01152 Mean Expected Number 0.001 -strand -171 : -180 CACACGTGtC AC RSP01256 Mean Expected Number 0.002 +strand -179 : -172 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -172 : -179 ACACGTGT AC RSP01602 Mean Expected Number 0.009 -strand -5 : -12 TCTCAATC Totally 11 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 60S ribosomal protein L24, putative |LOCUS: AT2G44860 |PROD: the same as GENE |complement(18507444..18509617) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +414 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.31 C - 0.16 1 ttacatatta tatgaaagga tcgagatact atataatata ataaggaatc 51 caaaattgaa tatttgggcc gtaattaccg cattaatggg cagacaaaac 101 ataacaacta atgggccgga aTCAATgtta ggttatgggc ctcaaattag 151 aaatttatgt taacgtttca taaaccctaa gagatttctt agaagtagtc 201 ATCTTCTTCT CTTTAGACCT TTTTTTCTGC AGGGGGGCTC TAAAGCAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00207 Mean Expected Number 0.001 -strand -120 : -128 GCGGTAATT AC RSP00230 Mean Expected Number 0.009 -strand -67 : -76 AACCTAACaT AC RSP00279 Mean Expected Number 0.002 -strand -21 : -29 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -29 : -21 AAACCCTAA AC RSP00858 Mean Expected Number 0.008 -strand -122 : -129 GGTAATTA AC RSP00868 Mean Expected Number 0.000 -strand -158 : -169 TATTATATTATA AC RSP01086 Mean Expected Number 0.006 +strand -41 : -32 TTaACGTTTC AC RSP01303 Mean Expected Number 0.003 +strand -30 : -21 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -30 : -21 TaAACCCTAA AC RSP01636 Mean Expected Number 0.001 +strand +38 : +48 CTCTAAAGCAA Totally 10 motifs of 10 different REs have been found Description of REs found 200. Group TF: GT-2 /AC: RSP00207//OS: Oryza sativa /GENE: PHYA/RE: GTE /TF: GT-2 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G44870 |PROD: the same as GENE |18510213..18511755 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.35 C - 0.18 1 atatacaaaa gacacacata gaagcatgga acccatctgt tgcaagagaa 51 gaaaccaaca tgatatgtaa tttggtttta tttaatttat ttccggttta 101 atgtcttgtt aaccggttaa gtgatttagg tttTCAATtt gtctctttat 151 agccttacaa gtttaaccaa tcaaaaagaa caattttctc aaacgagccc 201 AGGATCTTCG AGCTGATAAT TCTATTTTCT CAATTCATCT TCTAAGACTT 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G45010 |PROD: the same as GENE |18574985..18576934 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.34 C - 0.18 1 agaagagagg tctgatttta ccataaatat ttgtatcatt gaacactatt 51 gattgactgg tagtttgttg ttgttatccc aagtttcttc taattacttt 101 ttcatcACAA Tgtacaccgc ctaaagaggg taaaacgacg acgtggcgtc 151 tatctttcgg atttgttttc ttaatcatga gaagactttc tcacatggat 201 ATAGACGAGT CACGACGACT CACGCGTATC GAAACAAAAC GTTGTTGTTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.001 +strand +20 : +30 TCACGCGtATC AC RSP00750 Mean Expected Number 0.003 -strand -175 : -186 TTATgGTAAAAT AC RSP00819 Mean Expected Number 0.002 -strand -54 : -63 GCCACGTCgT AC RSP00821 Mean Expected Number 0.002 -strand -54 : -63 GCCACGTCgT AC RSP00986 Mean Expected Number 0.001 -strand -55 : -62 CCACGTCG AC RSP01030 Mean Expected Number 0.009 -strand -113 : -120 AGAAACTT AC RSP01034 Mean Expected Number 0.006 +strand -60 : -54 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -52 : -62 ACGCCACGTCG Totally 8 motifs of 8 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G45060 |PROD: the same as GENE |complement(18591427..18593851) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.33 C - 0.16 1 ttaactttaa aaaaattcaa ttgttgatag cataacacac tcatagtcaa 51 tggtcttgag tgaaataact aatctattaa ccataactaa tctataaaag 101 tctctggcgt ttATTGAaca attaagaaat agatgggaaa tgttggagat 151 aaactaaact tttcagggtc ttagttgtca atctgaaacg gggcccgatt 201 AAATTATACT CGGGTCATTC TTTTGTCCAC CGGGTTTTTC TTCAGAACTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.005 -strand -151 : -160 TTGACTATGA AC RSP01250 Mean Expected Number 0.002 +strand -189 : -180 AAAATTCAAT Totally 2 motifs of 2 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: vesicle-associated membrane protein |LOCUS: AT2G45140 |PROD: the same as GENE |18617881..18620365 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +223 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.19 T - 0.27 C - 0.14 1 aaattgtaat aattgtttcg ttttgctgta atttggctct atctttatac 51 attagaagag ataatcaaaa aagagataaa aataaagcca aaataaatgt 101 gttttttttg cgctggtcaa agaaaaaaaa agaagtccaa atgacagtta 151 tacccctaat aacgcaccat gagaactcag acgattaagg gtgtaatagt 201 AATAACAAGA AGTGAGTCTC CGGTCTGAAA CTAATTAAGG AGACGGCAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -134 : -125 AAAAAAGAGA AC RSP00953 Mean Expected Number 0.007 -strand -186 : -194 CAATTATTA AC RSP01134 Mean Expected Number 0.003 -strand +31 : +22 GTTtCAGACC Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: glycoprotease M22 family protein |LOCUS: AT2G45270 |PROD: the same as GENE |18673622..18676947 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.31 C - 0.22 1 ttagccggag gtgaaggaaa tacagagaaa ggtatatact tacttttcta 51 ggaagtgaac ggaaatggta aagctcatta tttttctact tgcttaaaac 101 ctctaaacca ggacCCAATc actatggtca aatttaaacc ggttctgatt 151 taaaccggat taggctgcaa tccaaacctc agctcatctt ctgcacacag 201 CTCAAGTTTC CGTCTTTCTC TTTCGGTTCG GTGAAATGGT TCGTCTGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.006 +strand -114 : -104 TAcTTGCTTAA AC RSP01103 Mean Expected Number 0.005 +strand -27 : -20 AAACCTCA Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: FLA8 |LOCUS: AT2G45470 |PROD: fasciclin-like arabinogalactan-protein (FLA8) |complement(18749614..18751185) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.07 T - 0.29 C - 0.30 1 tcttcttcca gctatgtccg aaaaagaaca catggcccca atccaaccca 51 actcacttct tataaacaac acacatttca aaaatataaa ggcaaaatta 101 actctagtca aatactctaa cctaaccatg atcaaaattt aaccgtggtt 151 aacaatcatc cttctctttt aacttcatct ctcttctcac tcagtcttct 201 CCACTTCCTC TGCTCCACAC TGACACTTGA AAAAACTCAA AACCGTCTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00014 Mean Expected Number 0.006 +strand -85 : -75 TCTAACCTAaC AC RSP00530 Mean Expected Number 0.003 +strand -38 : -27 TCTcTTTTAACT AC RSP01046 Mean Expected Number 0.008 +strand -162 : -154 CAATCCAAC Totally 3 motifs of 3 different REs have been found Description of REs found 13. Group RE: MRE-core /AC: RSP00014//OS: Arabidopsis thaliana /GENE: CHS/RE: MRE-core /TF: unknown 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G45520 |PROD: the same as GENE |complement(18761830..18763362) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.25 T - 0.30 C - 0.12 1 taaatctata tgttttatta gttctctgat ttctgttttg tttcgacaca 51 agttagttag tatttaatgt aattgggcca taaataaatg ggcctacata 101 ataatATTGG gcctaagtaa atggacctgg gccgagttcc gtctctttct 151 ggaagcttaa gaaaacaagt ttaggtctgg acctctagaa ttaattgttt 201 AGAGAGAGAA AGAGCGAGAG ATGGGAGGGA AAGGAAAAAA GAGGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.006 +strand -10 : +1 tTAATTGTTTA AC RSP00861 Mean Expected Number 0.000 -strand -51 : -59 AGAAAGAGA AC RSP00864 Mean Expected Number 0.004 +strand +1 : +9 AGAGAGAGA AC RSP00865 Mean Expected Number 0.003 +strand +43 : +51 GGAGAGAGA AC RSP00920 Mean Expected Number 0.002 +strand -153 : -142 AcAAGTTAGTTA AC RSP01134 Mean Expected Number 0.005 -strand -18 : -27 GgTCCAGACC Totally 6 motifs of 6 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: CYP76C1 |LOCUS: AT2G45560 |PROD: cytochrome P450 family protein |complement(18783126..18785584) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.33 C - 0.14 1 tttgttaatt agaaaagagt ccaaaccaaa tagtataaaa taattagttg 51 gttagatttt gctattttgt tgtatataaa aaaatatctt catatttgtt 101 tgatttcttc tgccaaaact aaagtagcgc cactggtagg aatttcggaa 151 ccgatcactg acattattta ttgtatatgc cgggggagtc gacaaacaaa 201 GTAAATGGAC CAAATTTGTG GCTACTACTC TCCTCAATTA TAAAAATGAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G45600 |PROD: the same as GENE |18796662..18798026 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.32 C - 0.17 1 acaaaactct aaaccgatct tttagcccga acaaaaacac tggataagtg 51 aagatgaaaa gaagaaaaac ggtgtcgtta ctttgtcaat gcacattaac 101 ttcttggtcg atttttatgg tACAATtttg ttagccgtta tattaggttc 151 tcttattcaa ttgacgtcaa tatagtcgat agtacgttac tgaattgtat 201 AAACTCTAAT CTAAACCACT ATTAATGGAG ACAAATTTGC TAATGTCAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -121 : -134 tAACGACACCGTTT Totally 1 motifs of 1 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: sin3 associated polypeptide p18 family protein |LOCUS: AT2G45640 |PROD: the same as GENE |complement(18806684..18808449) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.29 C - 0.16 1 tcttcaatgt gtgtttcaaa tatagatatt caaaggttat aaaccaagaa 51 aagaaaaagt agaaaaaaaa tatatatatt tcaaatcttt taaacggacc 101 ATTGGcaaca aaatctataa acgagttagg cccaaattgt tgtacaaaag 151 gcccattagg ttaaataagt atgggcctaa agcggtccga tcaatctctg 201 TGCCATTACC TTCTTCTTCG TCGTAGTGAT TTCTCTCGAG AGAAAAAGAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: 40S ribosomal protein S27 (RPS27A) |LOCUS: AT2G45710 |PROD: the same as GENE |18838235..18839281 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.31 C - 0.16 1 ttgtgaaata ctaaaatttt aggtgggaga agaaaattgg tccattattt 51 agcccaatag agtaaatcta tgatggaccg gatctaatat ttttttcagc 101 ccaaaacgtt aatgttgaca aagttgaaaa gaagaaatAT TGAcagtggg 151 ctttcggacc agaacctata agtcggcatt gttgtgcgaa ttagggtttt 201 ACATCTCCCA AGATCATTTG TCGGTTGATT CCATACGATC TCCAAGTCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 +strand -10 : -2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -2 : -10 AAACCCTAA AC RSP00879 Mean Expected Number 0.009 -strand -45 : -51 CGAAAGC AC RSP01303 Mean Expected Number 0.005 -strand -1 : -10 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G45730 |PROD: the same as GENE |complement(18843459..18846234) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.35 C - 0.21 1 attccacgtg gattttttac atttatttgg ggcaatagca ctcttaaagc 51 ccaataatgt ttcacctaaa tgggctctaa ccttggcctt aattattaac 101 atttaaaccg ctctttattt aaccgacaaa acctttagtc gtgtagttag 151 ggttttactt actaatccgc cattcacttt atttgtaatc agaaactgaa 201 AACTAACCAA ACATAACTGC AGTCTCTTCT TGTTTCGATG GAACTCAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -54 : -46 TTAGGGTTT AC RSP00280 Mean Expected Number 0.005 +strand -198 : -189 TCCACGTgGA AC RSP00280 Mean Expected Number 0.004 -strand -189 : -198 TCCACGTgGA AC RSP00369 Mean Expected Number 0.001 -strand -46 : -54 AAACCCTAA AC RSP00682 Mean Expected Number 0.001 +strand -198 : -189 tCCACGTGGA AC RSP00682 Mean Expected Number 0.001 -strand -189 : -198 tCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -197 : -190 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -190 : -197 CCACGTGG AC RSP01303 Mean Expected Number 0.002 -strand -45 : -54 aAAACCCTAA AC RSP01734 Mean Expected Number 0.004 -strand -189 : -195 TCCACGT Totally 10 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: eukaryotic phosphomannomutase family protein |LOCUS: AT2G45790 |PROD: the same as GENE |18862853..18865442 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.35 C - 0.16 1 tcataaaatt aattgttttc ggcctcaata ctatttcatg ttttttgggt 51 caacaacgtc caagtaccct ttatataaca taaataagga ttgttagaaa 101 agaataattt tgatgtgtca cgattatttt atcaaCCAAT cactgatctc 151 taggagaaaa agtgaggacc catagtttaa gcgacactct ttggttaaag 201 AATAAAGATT AGATCGGTCC AATTTATATA TTTACATGTT CCGCCATTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.003 +strand -67 : -58 AACCAATCaC AC RSP01463 Mean Expected Number 0.006 +strand +22 : +34 ATTTATATATTTA Totally 2 motifs of 2 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PIP1B |LOCUS: AT2G45960 |PROD: |18917384..18919035 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.37 C - 0.16 1 tatttatttt attagggtac aataacgaca tttgattaga gtaaagaaaa 51 tagttgcaaa gcgggatttg aaactctgtc cacatacttt aattatcatt 101 aaTCAATaac aagcattatc agtattcagc agcagcaaag atgataacgt 151 taattatact atcatgcaat taagttaact aattaactat catcttgttt 201 ATGTTTTAAT TTTGTTTCCA TCATCTTCCA ACCTTGAGTT TCGGTCACTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.004 +strand -141 : -136 AGCGGG AC RSP00301 Mean Expected Number 0.010 +strand -146 : -140 TGCAAAG AC RSP01304 Mean Expected Number 0.002 -strand -180 : -189 TGtACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G45980 |PROD: the same as GENE |complement(18924425..18926182) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +540 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.32 C - 0.25 1 caatgttaac aagccacgtg tttgtgacgt ttttgtaaaa acaaaatcgc 51 atatattttt ccgcgttacg ttgcgtttgc gttagtccac acgcatatat 101 atgtaaaaaa cctgttatta tcggtggcgt acCCAATcaa ttaccgactg 151 cagccggtcg cagcgtctat tcagccgacc taagaaccgg tatcgccggt 201 ATCAATAATT GCTGATCTTT TCCTTCTCTT CTTCCCCAGA TTCTCAAGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.001 -strand -180 : -188 ACACGTGGC AC RSP00175 Mean Expected Number 0.002 -strand -181 : -188 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -179 : -188 aACACGTGGC AC RSP00819 Mean Expected Number 0.005 +strand -188 : -179 GCCACGTgTT AC RSP00891 Mean Expected Number 0.004 -strand -142 : -150 AAAATATAT AC RSP01034 Mean Expected Number 0.010 -strand -182 : -188 ACGTGGC AC RSP01060 Mean Expected Number 0.003 +strand +3 : +11 CAATAATTG AC RSP01060 Mean Expected Number 0.003 -strand +11 : +3 CAATTATTG AC RSP01077 Mean Expected Number 0.001 +strand +3 : +11 CAATAATTG AC RSP01255 Mean Expected Number 0.003 -strand -180 : -187 ACACGTGG AC RSP01662 Mean Expected Number 0.000 +strand -178 : -167 TGTGACGTtTTT AC RSP01735 Mean Expected Number 0.001 +strand +38 : +46 AGATTCTCA Totally 12 motifs of 11 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1480. Group TF: HY5 /AC: RSP01662//OS: Arabidopsis thaliana /GENE: ARR8 (At2g41310)/RE: C/G-box /TF: HY5 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G46000 |PROD: the same as GENE |complement(18928030..18929240) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.37 C - 0.18 1 agaatcatac aattaccctt gttttattta cggtgcaacc tcgtgtcgtt 51 ttcatctttc agccttgata tgcttgccat ctttacgtca atagttggca 101 cgcagttcta ttttaagata gaaaaacggc gaacagtttt gaaccagcag 151 gttcagttta tgtcgttaat agtttttttt cccgaaacaa gtaaaaagtc 201 ACATTATTAT GGTTTTGTGA CTTGTGTGCG AGTTTGTAGA AGCTTTACTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -15 : -4 AAcAAGTAAAAA AC RSP00112 Mean Expected Number 0.005 -strand -111 : -118 TGACGTAA Totally 2 motifs of 2 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: late embryogenesis abundant protein |LOCUS: AT2G46140 |PROD: the same as GENE |18966151..18967620 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.25 C - 0.18 1 tttttcggac gagcaaagaa gtaagaacgc acgttatgac catgatgctc 51 taaaaaaagg atcttattcc ttttctaatg atggaaaaat tattatatta 101 ttccttttcc aacaaccaaa gaaaaatcaa aaatgtcacg ctccgGCAAT 151 taaggtattt atcatcctta aaagaggtac caaaatatat agaaccgaca 201 GCGCCATAAA CTTTAGAAAA GAGAGAGAGA GACAAAGAGA GATCTGATCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.004 +strand -129 : -114 TTTCTAATgATGGAAA AC RSP00085 Mean Expected Number 0.004 -strand -114 : -129 TTTCCATcATTAGAAA AC RSP00254 Mean Expected Number 0.006 +strand -132 : -126 CCTTTTC AC RSP00254 Mean Expected Number 0.006 +strand -98 : -92 CCTTTTC AC RSP00864 Mean Expected Number 0.002 +strand +20 : +28 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +22 : +30 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +24 : +32 AGAGAGAGA AC RSP00868 Mean Expected Number 0.005 +strand -110 : -99 TATTATATTATt AC RSP01640 Mean Expected Number 0.010 -strand +37 : +28 CTtTGTCTCT AC RSP01712 Mean Expected Number 0.003 +strand -151 : -142 CTAAAAAAAG Totally 10 motifs of 6 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ABI1L1 |LOCUS: AT2G46225 |PROD: expressed protein |18989009..18991349 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.40 C - 0.17 1 tgctgtatta attttgtaat tcagaggtat cttatagtat gatcaaatta 51 ttaattaatc ttgttttttt atgtgttcat aataacttat ttaagagaat 101 tatattcaaa aaaaaaaaaa acatagtgcg tctttcccaa agtcgttttc 151 ttctatacac cttttttaat aactctggaa gcaaaaatgg cataagagtc 201 CTTTGGATTT GGAATCGCTT CTACTTCACT CTCACCTTCC TCCTATTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.005 +strand +20 : +29 TCTACtTCAC AC RSP00286 Mean Expected Number 0.001 +strand +30 : +40 TCTCACCTtCC AC RSP00681 Mean Expected Number 0.010 +strand -149 : -141 TAATTAATC AC RSP00749 Mean Expected Number 0.009 +strand -190 : -179 ATTTTGTAATTc Totally 4 motifs of 4 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: BTB/POZ domain-containing protein |LOCUS: AT2G46260 |PROD: the same as GENE |19003041..19005706 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +143 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.29 C - 0.23 1 aaaatcgtac ctacgcgatt tatgcaaaat accggaaaaa gaaccaaagt 51 gcttattaca atcaaaagac caaaccggtt aaacaattag ttaggctggc 101 attaacgaac ctctttgtct ttaattagcc tttatccgtc accgccctgt 151 taccataacc gttcaacgtc gacccgctct ttgtttcaga aaaaaaaaac 201 AGAGAAAGAC TTTTTTAGTG TTTCTTTGTC ATTTTCGTTC CTCAAAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.009 -strand -111 : -121 CTAATTGTTTA AC RSP01598 Mean Expected Number 0.006 +strand +27 : +34 TGTCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: AGP16 |LOCUS: AT2G46330 |PROD: arabinogalactan-protein (AGP16) |complement(19025581..19026328) |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.30 C - 0.20 1 aaactaggaa aaaaaagaac aatagaggaa tggtcaaaaa agaataaaag 51 aaaattcgag gaaaatcatg cttcttagaa gttttttgtt taattagctt 101 gactagtaaa tagatttgac cggataaata accggttgaa accggtaacc 151 tttaaccggt cttcatacta taagaacacc ttaaacaagt cgtctccttc 201 CACTTCTTGC TTTATTCCTC TCATACCGTT TTCTCTCTCT CCTCCGTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.004 +strand -102 : -93 TTGACTAGtA AC RSP00653 Mean Expected Number 0.002 +strand +33 : +43 cTCTCTCTCCT AC RSP00727 Mean Expected Number 0.007 +strand -104 : -98 GCTTGAC AC RSP00864 Mean Expected Number 0.001 -strand +40 : +32 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +42 : +34 GGAGAGAGA AC RSP01643 Mean Expected Number 0.000 +strand -156 : -144 tAAAAGAAAATTC Totally 6 motifs of 6 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1463. Group TF: WRAF1; WRAF2 /AC: RSP01643//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np6a-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: SDH4 |LOCUS: AT2G46505 |PROD: expressed protein |complement(19096801..19097621) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.36 C - 0.20 1 ttgacatttc aagagactga gctaaaaatt acttaaaaat gagaatcaat 51 tatttttttt ccattggtcc attattttat gcaatgcagc acataataat 101 ctattttggt tttggtttgg gcttctggta gttctgaaaa gcccagtata 151 aagcccaact ccattaatgc atcttcacct ctacgacgag aattgtgctt 201 CCGATTCATT TCACATAGGG TTTGTTTCTC CGATCAGATC CAATTTCAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.002 -strand -87 : -95 CAAAACCAA AC RSP00943 Mean Expected Number 0.006 +strand +6 : +16 TCATTTCACAt AC RSP01596 Mean Expected Number 0.006 -strand +16 : +6 aTGTGAAATGA Totally 3 motifs of 3 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G46540 |PROD: the same as GENE |complement(19117544..19118841) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.30 C - 0.16 1 cttcgatttc ttgaaaattt aaaatactta gtaatttttt actgctggaa 51 gcagaatgag aaagagaaag atatacagta tatatatttt ttaattacgg 101 caaaggtgat tataatgggc cgaATTGCga acatttgggc ccagtaaccc 151 gacccgaccg gagatgatct ttaatttcgt ttcaggtgag aaaatggttt 201 ACTCAGGAGC AACTATCAAT CGAATCAGAC ATTGACGAGG AGCTTTGGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.006 +strand +32 : +41 TTGACgAGGA AC RSP00861 Mean Expected Number 0.003 +strand -142 : -134 AGAAAGAGA AC RSP00891 Mean Expected Number 0.006 -strand -111 : -119 AAAATATAT Totally 3 motifs of 3 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G46550 |PROD: the same as GENE |complement(19119061..19121224) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +695 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.28 C - 0.18 1 ggaagccttt tttagatctt cttttttgtc gccacgtgta attaatatct 51 aatcgaacgg ctgtcaggtg aaatctatgg gcaaatctgt ggactcaaat 101 actcattaac ataactatgg gtcctctcag aaaacggtgc cgttttgcgg 151 aagcttgcgt gctgaatgac acagagacta agaaaacgat aataaactgc 201 AAAATGATTC AAAAGATTTT AATCGAAAGC AAACAAAAAT TCTCTGACAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -162 : -170 ACACGTGGC AC RSP00120 Mean Expected Number 0.000 -strand -56 : -69 AAACGgCACCGTTT AC RSP00175 Mean Expected Number 0.001 -strand -163 : -170 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -161 : -170 tACACGTGGC AC RSP00524 Mean Expected Number 0.008 -strand -162 : -168 ACACGTG AC RSP00682 Mean Expected Number 0.002 +strand -170 : -161 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -161 : -170 TACACGTGGC AC RSP00892 Mean Expected Number 0.003 +strand -159 : -151 TTAATATCT AC RSP01033 Mean Expected Number 0.003 +strand -195 : -186 CCTTTTTTAG AC RSP01034 Mean Expected Number 0.005 -strand -164 : -170 ACGTGGC AC RSP01205 Mean Expected Number 0.005 +strand -195 : -186 CCTTTTTTAG AC RSP01255 Mean Expected Number 0.002 -strand -162 : -169 ACACGTGG Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: pyridoxine 5'-phosphate oxidase-related |LOCUS: AT2G46580 |PROD: the same as GENE |complement(19136313..19137667) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.39 C - 0.19 1 atcctctttg tatttatctc ttgttctttg aaagcattta tcgaaagatc 51 atcaaaaaaa aaaacattta tcttcttcct caaatttctt caactaagta 101 taaggcctaa tgggcctcat aattagtatc tcgtttaagg cctatttctt 151 taatagcttg cttgtattca ttctctttgt ctttggtttc tctgtaaaca 201 ATCGATCGAA AGATCAATGA ATTAAACTAT CATTGTTTGA ACAAACCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.009 -strand -168 : -175 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G46910 |PROD: the same as GENE |19279350..19281071 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.33 C - 0.18 1 tctatggatc atttgttact tgggtaaatc ggacttggtc attttcgatt 51 catgttctgg tggaataatt gacagctttc attgctcaaa ggctcggtta 101 aggtttgagc cggttcacga tgtcaggtca aaatactgcc acgtattaaa 151 ataaaaaaat gaagagtaat tatagaaaat aaagctgtct catcttcctc 201 AGTTCTCAGT TTGTCACCAT CCTCGAGCAG CTTTTGAGCT TTGAAGGTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -56 : -63 TACGTGGC AC RSP00064 Mean Expected Number 0.003 -strand -54 : -63 AaTACGTGGC AC RSP00304 Mean Expected Number 0.006 +strand -131 : -124 TGACAGCT AC RSP00501 Mean Expected Number 0.005 +strand +24 : +30 CGAGCAG AC RSP00819 Mean Expected Number 0.003 +strand -63 : -54 GCCACGTaTT AC RSP01014 Mean Expected Number 0.006 +strand -45 : -36 aAAATGAAGA AC RSP01034 Mean Expected Number 0.006 -strand -57 : -63 ACGTGGC Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: ARF1 |LOCUS: AT2G47170 |PROD: ADP-ribosylation factor 1 (ARF1) |19373694..19375870 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +640 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.31 C - 0.13 1 caaaaataaa agctgaaatt cttggttgca aaagcccaac aggcctgtgg 51 agatagcttt ttagattgat taaatgggcc gaattgggct gacacatgac 101 gagaatgtgg ctatagaaAT TGTtagtgag agggtccggg tccaaaaatg 151 ttgcagaagt gatatagtat ttatttaatt aaaaacatat tattcgacgt 201 ATTTTTAACG CTCACTGGAT TTATAAGTAG AGATTTTTTG TGTCTCACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00961 Mean Expected Number 0.006 +strand -174 : -167 TGCAAAAG AC RSP01191 Mean Expected Number 0.001 -strand -151 : -158 CCACAGGC Totally 2 motifs of 2 different REs have been found Description of REs found 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: galactinol synthase, putative |LOCUS: AT2G47180 |PROD: the same as GENE |complement(19375868..19377511) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.28 C - 0.32 1 agctgcttct agcgttttct ccgtataacc gtttggttta aatttctccg 51 gtacggtccc actttccaga actttcacgg tttcaccaaa cgccaatcac 101 caccgtctgt tctcctactt acacgtgtac gtatcagatt tcacgatcgt 151 aacccatcca agcgcctata ttaaccctgt ttatcccgct accgtaagtc 201 CTCATCAGCA AACACAAACA CACGACTAGA TAAACTCTAA ATCCTCACAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.009 +strand -80 : -74 ACACGTG AC RSP00524 Mean Expected Number 0.010 -strand -73 : -79 ACACGTG AC RSP00707 Mean Expected Number 0.000 +strand -81 : -72 TACACGTGTA AC RSP00707 Mean Expected Number 0.000 -strand -72 : -81 TACACGTGTA AC RSP00974 Mean Expected Number 0.002 +strand -81 : -72 TACACGTGtA AC RSP00974 Mean Expected Number 0.001 -strand -72 : -81 TACACGTGtA AC RSP01176 Mean Expected Number 0.003 +strand -200 : -190 AGCTGCTtCTA AC RSP01256 Mean Expected Number 0.003 +strand -80 : -73 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -73 : -80 ACACGTGT AC RSP01717 Mean Expected Number 0.000 -strand -71 : -82 GTACACGTGTaA Totally 10 motifs of 6 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 673. Group TF: G-box binding TF /AC: RSP00707//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 2 /TF: G-box binding TF 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1087. Group TF: Zmhox1a /AC: RSP01176//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 3 /TF: Zmhox1a 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: WRKY23 |LOCUS: AT2G47260 |PROD: WRKY family transcription factor |complement(19411890..19414154) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +638 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.35 C - 0.18 1 agtagtgtcg atcacatttt tcttttcgct ttacaaattt actactgatt 51 attttgtcta ataacaacga aacattaata ctacgaaatt tcgacataaa 101 aatgattctt gatcacgatt cacggacaac ggtctcaccg cccacacatg 151 actcatggct tgagtctata tattgaaaca atttaggaaa caataaggac 201 AAGTCTCTTT TTTTGTTTAA AGATGAACAA ATTTTTGTGT TCACATTAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.000 -strand -66 : -74 AGACCGTTG AC RSP00445 Mean Expected Number 0.002 -strand +13 : +4 AAAAAAGAGA AC RSP00664 Mean Expected Number 0.002 -strand -45 : -53 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 +strand -53 : -45 ATGACTCAT AC RSP01278 Mean Expected Number 0.003 -strand -45 : -53 ATGAGTCAT Totally 5 motifs of 4 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: mitochondrial substrate carrier family protein |LOCUS: AT2G47490 |PROD: the same as GENE |19494316..19496689 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +303 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.37 C - 0.11 1 agcagaaaat ataaaagatg atggcactta tggaatgctg atgggaccag 51 aatttggttg gtctgattcg tctggctgag aaagaaagta taatttattt 101 atttttttag taaacgaaat ttgttattaa aaaaataaga gccaagtaaa 151 aaatattttt aaaatcgtat atattttatt atttattttt agcttccggt 201 AAACAAAAAA ACACAGCCTT TGTTCTGTTT CTCTGCGATT TCTTCGATGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.005 +strand -50 : -38 AAaTATTTTTAAA AC RSP00635 Mean Expected Number 0.001 -strand -153 : -160 GGTCCCAT AC RSP00860 Mean Expected Number 0.004 +strand -122 : -114 AGAAAGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: small nuclear ribonucleoprotein D2 |LOCUS: AT2G47640 |PROD: the same as GENE |19544248..19545669 |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +215 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.30 C - 0.19 1 ttaaagattg gtggtctcat ggtttgaaat ttgaaaatgt atggcccaaa 51 gaatttataa gttatggcta cctaaaatat ttatattcgt ttggaaaacg 101 ttaaagcccc ccaaaaaaaa cattaaagcc catataaATT GAcaaggccc 151 aaaatttgaa aggcctaact taactatgtt gtagcgccgg tccgccaagt 201 ACTTTCGAGT ATCGAGTCGT CGTTCTTCTT CTTCCTCTGA GAGAGAGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.004 -strand +3 : -7 AGTACtTGGC AC RSP00075 Mean Expected Number 0.002 -strand +2 : -8 GTACtTGGCG AC RSP00333 Mean Expected Number 0.001 -strand -157 : -165 CCATACATT AC RSP00864 Mean Expected Number 0.001 +strand +40 : +48 AGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: |LOCUS: AT2G47670 |PROD: the same as GENE |complement(19551061..19551876) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.30 C - 0.23 1 acaacaccat aaagctagat ccaaaaataa tgcttaaacc gtttgtaatg 51 atgactacaa tacctacaaa atcaaatgaa cctcccaaat accctcataa 101 actTCAATta cacgtcccta attaaaaagg ttaaaactta atcccatagg 151 ctccttcttg gtcttgtgta tataatatag tctctctcga tctccatttg 201 AAATATCGTC CCAATTTCTT AAAAAGTTTG GATTCCTCCA ATAAAGAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.010 -strand +4 : -4 ATTTCAAA AC RSP00741 Mean Expected Number 0.002 +strand -76 : -65 AAAAGGTTAAAA AC RSP01013 Mean Expected Number 0.006 -strand -1 : -10 CAAATGGAGA AC RSP01014 Mean Expected Number 0.008 -strand -1 : -10 CAAATGgAGA Totally 4 motifs of 4 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: universal stress protein (USP) family protein |LOCUS: AT2G47710 |PROD: the same as GENE |complement(19561904..19563135) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.35 C - 0.14 1 tgggtaatat tcaaattaga ataaattttg tgtaaaatct gtgggttctt 51 cttatttaaa atctgtgggt aactttaaat attgggaaat ttactaatgg 101 aaaggcataa agaaatgagg accagccacg tcatcaaatc aaagtatcac 151 attcctcttt tctttttatt taaagaaatt aaataataga agaagaagat 201 ACCAAAACTC TCTTTTTCTG TGCAAACACT TTGGAGGATT CTTCTAGGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -68 : -76 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 -strand -68 : -75 TGACGTGG AC RSP00215 Mean Expected Number 0.001 +strand -75 : -68 CCACGTCA AC RSP00248 Mean Expected Number 0.001 +strand -76 : -67 GCCACGTCAt AC RSP00819 Mean Expected Number 0.001 +strand -76 : -67 GCCACGTCaT AC RSP00821 Mean Expected Number 0.000 +strand -76 : -67 GCCACGTCaT AC RSP00847 Mean Expected Number 0.001 +strand -75 : -66 CCACgTCATC AC RSP00913 Mean Expected Number 0.001 -strand -66 : -75 GATGACGTGG AC RSP00915 Mean Expected Number 0.001 -strand -66 : -75 GATGACGTGG AC RSP00916 Mean Expected Number 0.001 -strand -66 : -75 GATGACGTGG AC RSP00997 Mean Expected Number 0.002 -strand -66 : -75 GATGACGTGG AC RSP01034 Mean Expected Number 0.002 -strand -70 : -76 ACGTGGC AC RSP01275 Mean Expected Number 0.002 +strand -76 : -67 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 -strand -66 : -76 GaTGACGTGGC Totally 14 motifs of 14 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G47910 |PROD: the same as GENE |19621768..19622839 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.23 T - 0.21 C - 0.14 1 tacatgagac cgaggaggct gacttgagtt gaaaacattc cacattaaag 51 aagagagctc ttcatttttc tgaacgattg aagaaatgca ttctgcttaa 101 catttgaaac ctttacgaca gacagcaaaa tatatgtatt tgtgcggtga 151 aggaaaaaag gataaaatgg aaagaaatga agaaaaggcc aaaagaagag 201 GATAAAAAGA AGACTAAGAC ACAAAGAGAG ATAGCGTCTG TGAATGGCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01014 Mean Expected Number 0.001 -strand -133 : -142 aAAATGAAGA AC RSP01019 Mean Expected Number 0.004 -strand -136 : -142 ATGAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G47950 |PROD: the same as GENE |19631293..19631879 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.31 C - 0.16 1 tcatttgcat acaacttcca tcttctggaa ccaatggatc cctgttacaa 51 aagttgctct taaaacataa acaaaaacaa aagaaaagaa aacattttta 101 tatttgtcgT CAATaataat ggccactttc tgcttacatg tatatgaatg 151 tatatattac tataatacgt agctgctcgt gtttcttgtc taagttctct 201 GTTATAGTTA GGAGACAAAT AAAGAGAATT AGAGAACAGA AGACCAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.003 +strand -98 : -89 tTTGTCGTCA AC RSP00501 Mean Expected Number 0.002 -strand -22 : -28 CGAGCAG AC RSP00969 Mean Expected Number 0.001 -strand -88 : -97 tTGACGACAA Totally 3 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: expressed protein |LOCUS: AT2G47980 |PROD: the same as GENE |19638329..19644323 |SUPPORT | 21 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.22 T - 0.27 C - 0.10 1 tgaaaaatct ctagtgtact cgtgatgtat ttgattcaag tttgggggtt 51 aatttaagtt atcaacaact tgtagaaaca aagttaattc acagagtaat 101 aaatcattct aataggtatg ctcaggggca aATTGGcaaa acataaaaat 151 aaaaagagag ctactaaagt tttcgagcga aagcgaaaat gaaaatttta 201 TAATTCGAGC GAAATGTTAA AAAGCTGAAA ATTGGGGGAA GAAGAGAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.009 +strand -23 : -17 CGAAAGC AC RSP00881 Mean Expected Number 0.004 +strand -140 : -131 ATCAACAACt Totally 2 motifs of 2 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: sugar transporter, putative |LOCUS: AT2G48020 |PROD: the same as GENE |19651170..19654250 |SUPPORT | 17 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +341 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.40 C - 0.18 1 atcaaggttt tgacaagagg ccaaagacat cacgtgtctg tctctgtcca 51 atccacgcca gccactagca tgtgtgtgcg tattcagttt tacttgtaca 101 tctttcttct tttttttttt taaatgtgaa tttgcttagt gtatctttta 151 gtatacacat agtggataag tagtttataa actcattttt gtttgaactc 201 CCCCGAGTGG GCTCAACGTT GTCATTAGCT ATATTCTAGT TTAATGGTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 -strand -180 : -189 GCCtCTTGTC AC RSP00966 Mean Expected Number 0.001 -strand -163 : -172 GaCACGTGAT AC RSP00978 Mean Expected Number 0.003 +strand -172 : -163 ATCACGTGTc AC RSP01058 Mean Expected Number 0.005 +strand -41 : -34 TAGTGGAT Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: exonuclease family protein |LOCUS: AT2G48100 |PROD: the same as GENE |19677571..19680362 |SUPPORT | 7 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +744 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.25 C - 0.22 1 cataaatttc taaaactcta acccactcca acccggtttt ttctgttcgg 51 gtatcgggtc cggttttttt ttcgcaggcc ctaattaaga cattcaagaa 101 aacaagaaga agcataagaa gaggcctaaa tgcccagaga attaaacaaa 151 tgggccttta acaatatttt aaacaacact gaacaataga tgagatctca 201 ACTTCGAAAA GCTAAAGCCT TAATATAAAA CCAAACATCA ATCTCTCGCC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 2: GENE: PAC |LOCUS: AT2G48120 |PROD: pale cress protein (PAC) |19686800..19688616 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.39 C - 0.15 1 taaactgtga tcatgatcac ttttgttcct gagattagct ctctcttttt 51 tttttttgtt tgtctatatt gtatattata tttattattt agagcaacat 101 gattcgctat gtgtcacaga cactgactgg ggaaacaaca ttagattatg 151 aaaggaaatg aagccaagat ttttcagatt tctttgagac atttttcaat 201 TGAGCTACTA GTACTAAGCT ACACCACGGG GTTTAATTTG TGAAATCCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.003 -strand -150 : -159 AAAAAAGAGA AC RSP01642 Mean Expected Number 0.005 -strand -7 : -16 AAATGTCTCa Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G01060 |PROD: the same as GENE |complement(16650..18847) |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.31 C - 0.19 1 ctctaatgtt cctttcagtt tgaccaagaa tatattctta atttgtttcc 51 tttcttttga cgtttcaaaa tgatataaac ggagtaacat tttatgtcca 101 cACAATattt cttgtaatat ccacgtagga tgaaatatcc atttaaaccg 151 gtccacgtgt ccagacatca gcttctagtt ccattgtaca ataataataa 201 AAAAACCTTA CCTGAACTAA AAAAAAAAAA AAAAACGAAC TGAGAAGCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 +strand -49 : -40 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 -strand -40 : -49 GACACGTgGA AC RSP00153 Mean Expected Number 0.001 +strand -48 : -39 CCACGTGtCC AC RSP00188 Mean Expected Number 0.002 +strand -49 : -40 TCcACGTGTC AC RSP00189 Mean Expected Number 0.002 +strand -81 : -72 TCCACGTAGg AC RSP00204 Mean Expected Number 0.001 -strand -40 : -49 GACACGTGGa AC RSP00280 Mean Expected Number 0.005 +strand -81 : -72 TCCACGTAGg AC RSP00340 Mean Expected Number 0.002 +strand -49 : -40 TCCACGTGTC AC RSP00524 Mean Expected Number 0.005 -strand -41 : -47 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -40 : -49 GaCACGTGGA AC RSP00750 Mean Expected Number 0.008 -strand -7 : -18 TTATTGTAcAAT AC RSP00862 Mean Expected Number 0.002 -strand -146 : -154 AGAAAGGAA AC RSP01035 Mean Expected Number 0.005 +strand -46 : -40 ACGTGTC AC RSP01086 Mean Expected Number 0.006 +strand -144 : -135 TTgACGTTTC AC RSP01255 Mean Expected Number 0.001 -strand -41 : -48 ACACGTGG AC RSP01259 Mean Expected Number 0.001 -strand -73 : -80 CTACGTGG AC RSP01274 Mean Expected Number 0.003 +strand -49 : -40 TCCACGTgTC AC RSP01734 Mean Expected Number 0.007 +strand -81 : -75 TCCACGT AC RSP01734 Mean Expected Number 0.007 +strand -49 : -43 TCCACGT Totally 19 motifs of 18 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: plastocyanin-like domain-containing protein |LOCUS: AT3G01070 |PROD: the same as GENE |19599..20726 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.30 C - 0.19 1 aggaaattaa tatccggaaa aaaggtaaga aatatgacca aaatgaaaag 51 gaaaatatta cttttggtta attacataac gcttatcttg tacttttcgt 101 caacctcgag gtttaattaa aatttcgaag gttagtcgaa ggaattacgg 151 atctagagag atcttttccc tgaaaaagag acatatttat ctctcagatt 201 GAACTTCGAT AAACCCATCC CCCCCCACAA ACGACGACTC ATCCTTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00067 Mean Expected Number 0.000 -strand -141 : -154 TAATATTTtCCTTT AC RSP00114 Mean Expected Number 0.004 +strand -108 : -99 CTTtTCGTCA AC RSP00255 Mean Expected Number 0.001 +strand +37 : +45 ACTCATCCT AC RSP01640 Mean Expected Number 0.006 -strand -15 : -24 aTATGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 66. Group TF: DBP1 /AC: RSP00067//OS: Nicotiana tabacum /GENE: CEVI1/RE: DBP1 BS /TF: DBP1 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G01130 |PROD: the same as GENE |complement(44491..45597) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.23 T - 0.31 C - 0.15 1 aacaaaaggt tacattacat ccatcgaatt tgatagtaaa tccttaatcg 51 tttacttaat gtgcatgcaa atttgggcgt aatagtaaga aggatatggg 101 cctgacgttt ggtactattg aataaaggcc catataaagc CCAATaattt 151 gcttttctga gaagacggag acaaaggagt cgctctggtc tttcattatc 201 GCGAATCTGA GATTTCGGAA GATTCGATCG ATTTGGGGGT TTTAGGGTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 +strand +42 : +50 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand +50 : +42 AAACCCTAA AC RSP00416 Mean Expected Number 0.008 +strand -183 : -177 CATCCAT AC RSP00447 Mean Expected Number 0.006 -strand -43 : -52 AGaAAAGCAA AC RSP01303 Mean Expected Number 0.006 -strand +51 : +42 TAAACCCTAA AC RSP01304 Mean Expected Number 0.005 -strand +51 : +42 TaAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: homeobox-leucine zipper protein |LOCUS: AT3G01220 |PROD: the same as GENE |73488..75545 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.32 C - 0.18 1 cgttacatga tcgaaaatat ttgaggcaga aactataaaa taactttatt 51 acatgaactg gagaatatat atgaaatata ataataagcc taaagctttt 101 aaaatattaa ggatgggtcc tagaaacctc cctagcttga tcctttcctc 151 attctttctc tctctttctc ttatatgaga ggttgatgag atccacaaga 201 AACACCTAAC TCATTTGATA GTGATTTCCA AATCTGCAAA CAACAAAGTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.002 +strand -45 : -35 TTCTCTCTCtT AC RSP00861 Mean Expected Number 0.001 -strand -32 : -40 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -36 : -44 AGAGAGAGA AC RSP00999 Mean Expected Number 0.004 -strand +24 : +14 TCACTATCaAA AC RSP01104 Mean Expected Number 0.004 +strand -77 : -70 AAACCTCC AC RSP01692 Mean Expected Number 0.004 -strand -186 : -193 TTCGATCA Totally 6 motifs of 6 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pectate lyase family protein |LOCUS: AT3G01270 |PROD: the same as GENE |complement(82695..84904) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.27 C - 0.16 1 aatatccaaa tataggaaac gaacaaaaaa caaggagatg taaaattaaa 51 aagaaaaaaa gaaaacaaag aaagctgtcc acaagtaaat tatggtggct 101 ttccatacat aacgggaaat ttttctaaat atagtagttc actttcttca 151 ccaggttttt tttatcatta tttaaacacc aacattcatg tttgtcaaac 201 TTCGCAATAC GATTCATCTA CCAAAAAAGG CTTTAGGTCA AACAGAAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.008 +strand -79 : -64 TTTCTAAATATAGTAg AC RSP00085 Mean Expected Number 0.008 -strand -64 : -79 cTACTATATTTAGAAA AC RSP01033 Mean Expected Number 0.001 -strand +30 : +21 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.003 -strand +30 : +21 CCTTTTTTGG Totally 4 motifs of 3 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: porin, putative |LOCUS: AT3G01280 |PROD: the same as GENE |85619..87865 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.21 T - 0.31 C - 0.16 1 ctcattttag gcgtggaaag aaaaatgtgt tattaaacga cgccgtttag 51 ttgccacgta ataaatgaga ataaatttct tggtgagtgg ggaataaata 101 tatggacggc tgtggataag gaatactgaa gcaagcgagt ctccatccaa 151 cggctgataa aattatgctt gataaacagg aaaactcttc tttctctgat 201 AATATTCGGA AATAAAAAAC ATTTTAGGGT TTTCCTCAGT CTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 -strand -141 : -148 TACGTGGC AC RSP00064 Mean Expected Number 0.003 -strand -139 : -148 AtTACGTGGC AC RSP00120 Mean Expected Number 0.000 +strand -166 : -153 AAACGACgCCGTTT AC RSP00247 Mean Expected Number 0.003 +strand -148 : -139 GCCACGTAAt AC RSP00263 Mean Expected Number 0.000 +strand -57 : -49 CATCCAACG AC RSP00279 Mean Expected Number 0.002 +strand +24 : +32 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +32 : +24 AAACCCTAA AC RSP00864 Mean Expected Number 0.000 -strand +50 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +48 : +40 AGAGAGAGA AC RSP01034 Mean Expected Number 0.004 -strand -142 : -148 ACGTGGC AC RSP01303 Mean Expected Number 0.005 -strand +33 : +24 aAAACCCTAA AC RSP01497 Mean Expected Number 0.002 -strand -47 : -56 GCCGTtGGAT Totally 12 motifs of 11 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: band 7 family protein |LOCUS: AT3G01290 |PROD: the same as GENE |complement(88064..89429) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.33 C - 0.18 1 ataaaaacga aaagcatatt tatcaaatat tattattgaa tattctccaa 51 gatataaaca atttgacttt tcaatgaaaa tgccactatt gaataataaa 101 taggaaattt ccgaggagta gtacaactag atgacaactt gacatgatct 151 tcttcttact tttgtctata taacactcct gcgactttct tctcttcaac 201 AAACTTACAG AGAGACAAAT ACCTATAATA AGCCATTCAT AATCTTCTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01527 Mean Expected Number 0.003 +strand -5 : +7 TCAACAAACTtA Totally 1 motifs of 1 different REs have been found Description of REs found 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase, putative |LOCUS: AT3G01300 |PROD: the same as GENE |complement(90605..93592) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +250 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.34 C - 0.18 1 gaaggagata catagatagt tttatcaaat tttaaaaaat gttggtaatg 51 caattaggga acatttgtcc gtgaaggaat taattagtct ctgtttaaaa 101 aactacgaaa aatgcgtttt gtaactgttg ttgagaagag aagagagagt 151 tagcaaacaa acacatatat atttacatta ttattgccca acaaatctct 201 CTCTCTTGCC CGCTTCGTGC CCGTCTCTTC TCTCTTCTTC GTATTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.002 +strand +28 : +38 TTCTCTCTtCT AC RSP00734 Mean Expected Number 0.003 -strand -80 : -87 CAAAACGC AC RSP00864 Mean Expected Number 0.001 -strand +6 : -3 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +4 : -5 AGAGAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: armadillo/beta-catenin repeat family protein |LOCUS: AT3G01400 |PROD: the same as GENE |151769..153224 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.31 C - 0.20 1 tatgattaac atcagcagtg ggcccacttt taatagacat tgaagcccat 51 tcttataatg ggtcttatct acaaaaagcc caaagtaacc atgagacacg 101 cggagcctcg taataataat gggaccgggc cattacaaaa cataaaatat 151 atatttattt atacatgaat gaaaaccatt aattaatttt ataataaggt 201 ATTATTATTC CACTCTCTCT CTCTAGACTC TGAATTAGCT CATTCTTGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.006 +strand -116 : -108 GTAACCATG AC RSP00340 Mean Expected Number 0.002 -strand -97 : -106 TCCgCGTGTC AC RSP00523 Mean Expected Number 0.005 +strand -105 : -99 ACACGCG AC RSP00635 Mean Expected Number 0.001 -strand -75 : -82 GGTCCCAT AC RSP00864 Mean Expected Number 0.001 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +22 : +14 AGAGAGAGA AC RSP01470 Mean Expected Number 0.009 -strand -29 : -38 TCATtCATGT AC RSP01733 Mean Expected Number 0.009 -strand -98 : -103 CCGCGT Totally 8 motifs of 7 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxygen evolving enhancer 3 (PsbQ) family protein |LOCUS: AT3G01440 |PROD: the same as GENE |168442..169625 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.25 C - 0.20 1 cggcaataca gatcggtgaa ggaaaaagca aagaagatac aagttttttt 51 tgtcacgtaa aacggcacga actctacttt atcaattcag gaacagcgag 101 tagttaaaat ATTGAattac gaaaacaccc cttggttcag ataaaatctt 151 tgtgatggcc gcttttctca tttataacgg ataaaaaccg taaacaatac 201 ACAAGAACAG AGGCTGACAC CTAAAGCTTA CTCTCTAACT GCAATGGCTC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G01450 |PROD: the same as GENE |complement(169724..171936) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +550 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.25 C - 0.22 1 taaaaataaa aatgcatatc tagtccgagg gtatttgagg aatttacaat 51 aaccaaccaa agtgtatcag agagaaggaa aagaaaaaca ttaatttcgc 101 ccaagatatg ccgtacaaat gggtcccctc cgttggatcc ataaaacgac 151 gtcggtgtaa acgagtatga ctacgacgac tctactacga gttgcgaact 201 GTTGGCCGGA AATCAATTTC GTCGTCTTCA TCGACTCTTT CTCTCCCTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.002 -strand -149 : -160 TTATTGTAAAtT AC RSP01078 Mean Expected Number 0.001 +strand -152 : -141 ATAACCAaCCAA AC RSP01703 Mean Expected Number 0.001 -strand -46 : -55 CCGACGTCGT Totally 3 motifs of 3 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peptidyl-prolyl cis-trans isomerase |LOCUS: AT3G01480 |PROD: the same as GENE |188392..190858 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +184 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.22 C - 0.23 1 aaagcccaac taacgaccca tcatagtaaa tcacagaaaa agatgataac 51 taaacagatc gtgcaaagaa agcccaacta acggcccatc ataataaatt 101 acaaaaagaa agaatccgga agaaaATTGA aatcttatcc agagtgtaga 151 gagaaagaag cggagtcaca aaaacccctt atcctcttct tcttcatcat 201 CATCTCTAAT TCAAATATCC GACGCAGACA TTTTAGACAA AGTTACTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01642 Mean Expected Number 0.003 -strand +33 : +24 AAATGTCTgC Totally 1 motifs of 1 different REs have been found Description of REs found 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G01510 |PROD: the same as GENE |complement(198686..201749) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.33 C - 0.23 1 agtccaattc aatgcgttga ctcaaaggaa cgtttgatat tttttttttc 51 catttttttt ttctcactga gaggaaaaga cacgtgtcat gtgttgataa 101 aaaggaaatt agatacttcc acgagaaagc gggacctacg tgaagacacg 151 tggaccacta atttctttct taccttcctc tgccgcctcg ttttctgctc 201 ACAGTTCCAA CTTCTTCCAT ACACACACAT TCTCGGAAAA ATCTCTATTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 -strand -47 : -56 TCCACGTgTC AC RSP00068 Mean Expected Number 0.004 +strand -56 : -47 GACACGTgGA AC RSP00143 Mean Expected Number 0.003 +strand -122 : -113 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -113 : -122 GACaCGTGTC AC RSP00188 Mean Expected Number 0.003 -strand -47 : -56 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -122 : -113 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 +strand -56 : -47 GACACGTGGa AC RSP00204 Mean Expected Number 0.002 -strand -113 : -122 GACACGTGtC AC RSP00340 Mean Expected Number 0.003 -strand -47 : -56 TCCACGTGTC AC RSP00524 Mean Expected Number 0.009 +strand -121 : -115 ACACGTG AC RSP00524 Mean Expected Number 0.009 +strand -55 : -49 ACACGTG AC RSP00629 Mean Expected Number 0.009 +strand +37 : +44 AAAAATCT AC RSP00682 Mean Expected Number 0.001 +strand -56 : -47 GaCACGTGGA AC RSP00860 Mean Expected Number 0.006 -strand -31 : -39 AGAAAGAAA AC RSP01035 Mean Expected Number 0.009 -strand -50 : -56 ACGTGTC AC RSP01035 Mean Expected Number 0.009 -strand -116 : -122 ACGTGTC AC RSP01255 Mean Expected Number 0.001 +strand -55 : -48 ACACGTGG AC RSP01256 Mean Expected Number 0.003 +strand -121 : -114 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -114 : -121 ACACGTGT AC RSP01274 Mean Expected Number 0.002 -strand -47 : -56 TCCACGTgTC AC RSP01679 Mean Expected Number 0.000 -strand -166 : -177 AAACGTtCCTTT AC RSP01722 Mean Expected Number 0.000 -strand -46 : -57 gTCCACGTGTCT AC RSP01734 Mean Expected Number 0.006 -strand -47 : -53 TCCACGT Totally 23 motifs of 17 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1497. Group RE: JRE (Qualt. Seq.) /AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Qualt. Seq.) /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: universal stress protein (USP) family protein |LOCUS: AT3G01520 |PROD: the same as GENE |208446..210110 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.23 T - 0.29 C - 0.20 1 ttgttaaagg gctttcacat gaaccgcatt aaagggtagt ttaggacatt 51 tacgatagaa cttggtaggc gtagctagct gtcctgtaac agaaaaaacc 101 tgcgcatttt agcatgctta tgaaattcat ttgctaaaag acgcatagac 151 acgtcgtggg cgaagggttc tttgtcttct tcccccaact gagcaagatt 201 GTTTTCCTTA AGAGCTTCAT CGTCATCATC CGAGAATTGG AGCAGAGATA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.006 +strand -114 : -107 TAACAGAA AC RSP00628 Mean Expected Number 0.007 -strand +3 : -5 AACAATCT AC RSP01201 Mean Expected Number 0.003 -strand +19 : +12 TGAAGCTC Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: triose phosphate/phosphate translocator, putative |LOCUS: AT3G01550 |PROD: the same as GENE |complement(216820..219016) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.28 C - 0.15 1 cttatgagga aagataaata aaatcgagcc aatgttatat tgaaaaaaat 51 gtcggcatcg gcatgtgagt tatttttatc atactcaaaa acattcagat 101 agtagaacga gagaaaagtc acataataaa gacaactctt ctaaataata 151 ctaatatcaa gtttgcagta tatccaaaaa caaaacaaac ttttttcttc 201 TTACATGAAA ATGAGGAGGT AGACTCATGT AACATAACTC TTACCAATAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.005 -strand -145 : -150 GCCGAC AC RSP01010 Mean Expected Number 0.001 -strand -144 : -152 TGCCGACAT Totally 2 motifs of 2 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: aldose 1-epimerase family protein |LOCUS: AT3G01590 |PROD: the same as GENE |225968..228630 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +686 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.34 C - 0.16 1 gcttacttac ttgtagcttt tctattggtc aacatttttc tttattatgt 51 gctgtagtgt attaaatgtt atttaaatac tagcatctct ccaggataaa 101 cataaCCAAT tagagaacaa taaataaaga ttgattaagg aaataaaaga 151 aaagaaggac gtggcagtat cggagctagt gcctgttatt gagaattgga 201 AACAGCTACA AATAGTACGC ACAAGCCCTT CTTCTTCTTC TTCTTCTTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.003 +strand -45 : -36 AGgACGTGGC AC RSP00155 Mean Expected Number 0.000 +strand -74 : -62 AAGATTGATTaAG AC RSP00158 Mean Expected Number 0.009 -strand -56 : -66 TATTTcCTTAA AC RSP00211 Mean Expected Number 0.009 -strand -88 : -98 CTAATTGgTTA AC RSP00819 Mean Expected Number 0.002 -strand -36 : -45 GCCACGTCcT AC RSP00821 Mean Expected Number 0.001 -strand -36 : -45 GCCACGTCCT AC RSP01034 Mean Expected Number 0.004 +strand -42 : -36 ACGTGGC Totally 7 motifs of 7 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 150. Group RE: 13 bp CytRE /AC: RSP00155//OS: Cucumis sativus /GENE: hpr-A/RE: 13 bp CytRE /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G01740 |PROD: the same as GENE |267836..268845 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +289 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.31 C - 0.21 1 ggtcaccgaa acagattcag acacgtcaac atgttcgcaa agtgcactca 51 ttatccctcg ttgacttcta tttaaaactg acgagtaatt attactatca 101 atATTGGgct ctcgtatatg gtatattatc gggcccaacc caaaacatat 151 ttgggccgga ttagaaacta gtgagaaaaa gggaatgtta ctatgttagt 201 ATTATTGTTG ACTGTTAGAG TTTTTTTCGC TCCGCCTCTC TGAAACTCGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00019 Mean Expected Number 0.001 +strand -85 : -74 AtATGGTATATT AC RSP00115 Mean Expected Number 0.007 -strand -130 : -140 ATAGAAgTCAA AC RSP00212 Mean Expected Number 0.008 -strand -107 : -115 TAATAATTA AC RSP00917 Mean Expected Number 0.003 -strand -171 : -180 GTTGACGTGT AC RSP00997 Mean Expected Number 0.003 -strand -171 : -180 GTTGACGTGT AC RSP01035 Mean Expected Number 0.010 -strand -175 : -181 ACGTGTC AC RSP01056 Mean Expected Number 0.003 +strand -17 : -7 AATGTTACTaT AC RSP01258 Mean Expected Number 0.003 -strand -173 : -180 TGACGTGT Totally 8 motifs of 8 different REs have been found Description of REs found 18. Group TF: GT-1 /AC: RSP00019//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box5 /TF: GT-1 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: calmodulin-related protein, putative |LOCUS: AT3G01830 |PROD: the same as GENE |296061..299270 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.33 C - 0.23 1 tgttcataat aaaaacagaa atagaaactt gtcaacatag aagccgcggg 51 aacaaagcgt ttcttctttt gtacgtagcg ccgtaaacaa atcaacaagt 101 ccACAATccg catgtgttaa aagtacggtc ttatatttca acgtttttca 151 aacgtctctc cttcatcttc tatatatttt gccaaactga acaagtaata 201 GTCTTCAAAC TATAATCATT TTCTCCTATC TCTCGCTCAA GTCTTCTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.009 +strand -195 : -187 ATAATAAAA AC RSP00051 Mean Expected Number 0.002 -strand -122 : -131 GCtACGTACA AC RSP00052 Mean Expected Number 0.000 +strand -130 : -120 GTACGTaGCGC AC RSP00075 Mean Expected Number 0.001 +strand -130 : -121 GTACGTaGCG AC RSP00441 Mean Expected Number 0.006 +strand -150 : -141 AACAAAGcGT AC RSP00891 Mean Expected Number 0.010 -strand -21 : -29 AAAATATAT AC RSP01030 Mean Expected Number 0.008 +strand -178 : -171 AGAAACTT Totally 7 motifs of 7 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 51. Group RE: ABRE /AC: RSP00052//OS: Oryza sativa; /GENE: Rab-16A/RE: ABRE /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ribulose-phosphate 3-epimerase, cytosolic |LOCUS: AT3G01850 |PROD: the same as GENE |complement(299996..302044) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.25 C - 0.23 1 ggtcgttgta gtaataagat ccattaaaaa aagaagtcgt ctctctcaaa 51 ttgcaaaatc acccccacac caaaagacaa aattaccctg cgatttaatt 101 attatgaatt tatgacggta cctccacgtc aacataatgg ctgatgccac 151 gtcatcacgc atgttgagat ttggtggaga gatccggggt tcttagaggt 201 ATCCAACTAT CCATCCATCA TCGGTCAGTC CCCAAAGTCG GCGGAAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.004 +strand -96 : -86 TGAATTTaTGA AC RSP00113 Mean Expected Number 0.001 -strand -47 : -55 TGACGTGGC AC RSP00212 Mean Expected Number 0.005 -strand -97 : -105 TAATAATTA AC RSP00214 Mean Expected Number 0.004 -strand -47 : -54 TGACGTGG AC RSP00214 Mean Expected Number 0.004 -strand -70 : -77 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -77 : -70 CCACGTCA AC RSP00215 Mean Expected Number 0.004 +strand -54 : -47 CCACGTCA AC RSP00248 Mean Expected Number 0.005 +strand -55 : -46 GCCACGTCAt AC RSP00701 Mean Expected Number 0.002 -strand -13 : -20 CCCGGATC AC RSP00790 Mean Expected Number 0.000 +strand -97 : -87 ATGAATTTATG AC RSP00819 Mean Expected Number 0.003 +strand -55 : -46 GCCACGTCaT AC RSP00821 Mean Expected Number 0.003 +strand -55 : -46 GCCACGTCaT AC RSP00847 Mean Expected Number 0.007 +strand -54 : -45 CCACgTCATC AC RSP00913 Mean Expected Number 0.004 -strand -45 : -54 GATGACGTGG AC RSP00915 Mean Expected Number 0.005 -strand -45 : -54 GATGACGTGG AC RSP00916 Mean Expected Number 0.004 -strand -45 : -54 GATGACGTGG AC RSP00917 Mean Expected Number 0.004 -strand -68 : -77 GTTGACGTGG AC RSP00997 Mean Expected Number 0.005 -strand -45 : -54 GATGACGTGG AC RSP01034 Mean Expected Number 0.010 -strand -49 : -55 ACGTGGC AC RSP01106 Mean Expected Number 0.001 +strand -57 : -47 AtGCCACGTCA AC RSP01275 Mean Expected Number 0.004 +strand -78 : -69 TCCACGTCAa AC RSP01275 Mean Expected Number 0.004 +strand -55 : -46 gCCACGTCAT AC RSP01280 Mean Expected Number 0.001 -strand -45 : -55 GaTGACGTGGC AC RSP01470 Mean Expected Number 0.007 +strand -46 : -37 TCAcGCATGT AC RSP01658 Mean Expected Number 0.000 -strand -45 : -56 GATGACGTGgCA Totally 25 motifs of 22 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 667. Group RE: Oct (d) /AC: RSP00701//OS: Triticum aestivum /GENE: H3/RE: Oct (d) /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: WRKY45 |LOCUS: AT3G01970 |PROD: WRKY family transcription factor |complement(326481..327419) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +253 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.31 C - 0.15 1 agagccaaaa tagtcaacaa tctcaacatc attcgagctc attgtttatt 51 gaattcaatc aagtttggta ggtgaacctc aaatacacgt gatattggat 101 attatcttgg aaaccttgct aatccaaATT GTaaatcaaa taagaaaaga 151 atgattacct cagagatcta gatgcatatt gattcttgac caagaaatat 201 GTTTGAAATT TGAATCCATT GAACCAAAAT TTGAAGGAGT TGCATATATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.008 +strand -163 : -153 CTcATTGTTTA AC RSP00489 Mean Expected Number 0.007 -strand -127 : -136 cACCTACCAA AC RSP00524 Mean Expected Number 0.006 +strand -116 : -110 ACACGTG AC RSP00651 Mean Expected Number 0.001 -strand -128 : -138 ACCTACCAAaC AC RSP00817 Mean Expected Number 0.002 +strand -117 : -108 TACACGTGaT AC RSP00949 Mean Expected Number 0.005 +strand -190 : -183 TAGTCAAC AC RSP00978 Mean Expected Number 0.002 -strand -108 : -117 ATCACGTGTa AC RSP01453 Mean Expected Number 0.006 -strand -128 : -134 ACCTACC AC RSP01527 Mean Expected Number 0.001 +strand -187 : -176 TCAACAAtCTCA Totally 9 motifs of 9 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G01980 |PROD: the same as GENE |complement(327462..329029) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +189 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.30 C - 0.17 1 tatgatggaa tttggttggg gaacagtgat aacttacgct tgcttccggc 51 gccgggaaag ttggaaaacc tacaaagtac agaaatggat ctgggccttg 101 aagtgggctt tttattaaag aaaaaaatac atctccgtta TCAATcacca 151 tcttcttcta tctacaaatt aaagaaggta acaacagaac gtggtggatc 201 ATGTGGTTAG GCATTAATTA TTTGCTTTGT TTCGCCGTTT TGGTAACACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.005 -strand +31 : +22 AaCAAAGCAA AC RSP00550 Mean Expected Number 0.004 +strand -6 : +5 TGGATcATGTG AC RSP00709 Mean Expected Number 0.005 +strand +15 : +23 TAATTATTT AC RSP00984 Mean Expected Number 0.000 -strand -160 : -169 AAGCGTAAGT AC RSP01435 Mean Expected Number 0.004 -strand -179 : -188 TCCCCAACCA Totally 5 motifs of 5 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 905. Group RE: Wound-inducible nuclear factor BS /AC: RSP00984//OS: Solanum tuberosum /GENE: PI-IIK/RE: Wound-inducible nuclear factor BS /TF: unknown ||Identical REs AC: RSP01271 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: aspartate kinase, lysine-sensitive, putative |LOCUS: AT3G02020 |PROD: the same as GENE |complement(340563..343842) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +425 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.32 C - 0.17 1 ttattgctaa tttaatcaaa caaaatatgt atatctatga gtaggtggcc 51 acgttttttc gatttaccat ttgctaacac cccctcaacc tcctaagggt 101 tcactaatgg aatttgtaga tgtcacgttt tccaaccaaa aaaaaacaaa 151 actttagtta aaacgactag tatatatgtg ctaaaccagg agtttgaatt 201 ATTATTAAGC AGATTCATAT TTTGGAAAAG AACACTGAAG TCGAATGATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.002 +strand -161 : -152 AGTAgGTGGC AC RSP00819 Mean Expected Number 0.001 +strand -153 : -144 GCCACGTtTT AC RSP00911 Mean Expected Number 0.000 +strand -156 : -144 GtGGCCACGTTTT AC RSP01032 Mean Expected Number 0.006 -strand +25 : +16 CCAAAATATG AC RSP01034 Mean Expected Number 0.003 -strand -147 : -153 ACGTGGC Totally 5 motifs of 5 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 842. Group RE: A2 /Group TF: HvABI5 /AC: RSP00911//OS: Hordeum vulgare /GENE: HvABI5/RE: A2 /TF: HvABI5 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PTF1 |LOCUS: AT3G02150 |PROD: TCP family transcription factor, putative |391098..392765 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +431 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.11 T - 0.44 C - 0.20 1 attcatttta ttttcccttc gaggatagcg aaatccgcca cgtggcatta 51 ctacatccat tgcttttttt aacataaata cttaagtcgc aattcttcta 101 aattttggag gcttatgatA TTGGtagggt tctcatattc acttccaaaa 151 gcatcttctt ctttctaatt ttctttttct ttttatctta ttttcatttt 201 ATTCATATAC TTTTTGAAAA GAAAAGTCGA ATCACATACT TTCTTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.000 +strand -164 : -155 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.000 -strand -155 : -164 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.000 +strand -164 : -155 GCCACGTGGC AC RSP00073 Mean Expected Number 0.000 -strand -155 : -164 GCCACGTGGC AC RSP00153 Mean Expected Number 0.000 +strand -163 : -154 CCACGTGGCa AC RSP00153 Mean Expected Number 0.000 -strand -156 : -165 CCACGTGGCg AC RSP00175 Mean Expected Number 0.000 +strand -162 : -155 CACGTGGC AC RSP00175 Mean Expected Number 0.000 -strand -157 : -164 CACGTGGC AC RSP00204 Mean Expected Number 0.000 +strand -164 : -155 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -155 : -164 GcCACGTGGC AC RSP00682 Mean Expected Number 0.000 +strand -164 : -155 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -155 : -164 GCCACGTGGc AC RSP00718 Mean Expected Number 0.000 +strand -163 : -156 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -156 : -163 CCACGTGG AC RSP01034 Mean Expected Number 0.001 +strand -161 : -155 ACGTGGC AC RSP01034 Mean Expected Number 0.002 -strand -158 : -164 ACGTGGC Totally 16 motifs of 8 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycosyl transferase family 8 protein |LOCUS: AT3G02350 |PROD: the same as GENE |479013..481481 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +242 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.33 C - 0.13 1 ataaaagaag aaaaagaata aggggtgtga aacataaaat aaacgaaaat 51 aaagggtgtg aatgtgaaat aaaaacaagt ttggatttgt caattgatcg 101 caccgacgcg gaaatctttg gtctcctcac tcgtcagtcg tcaccatcct 151 cgacattaca ttgtttttat ttatttaatt aatatgttag ttacctctgc 201 ACTAAATTAA ATGAATAGTT TTATTTGTAT ATTTTAGGCA AGATGGATTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01733 Mean Expected Number 0.009 -strand -90 : -95 CCGCGT Totally 1 motifs of 1 different REs have been found Description of REs found 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 6-phosphogluconate dehydrogenase family protein |LOCUS: AT3G02360 |PROD: the same as GENE |481959..484154 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +546 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.28 C - 0.23 1 ttccaatgac caatatgatg tcaagagaaa acaattcaag atccaacgac 51 tactaccacc cacccttttc ttacctaacg caggagtggc caattttgac 101 aatactttaa caacaaaaaa agggaaaagg agaaaaaaat attattactt 151 tggtagcagt ggtgcgaatc agaccgttca tttgctatat atctgctaca 201 AACAAACATC ACTAATCTCT GCAATTTTTA CTCTCCTCCT TCACGTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.009 -strand -71 : -77 CCTTTTC AC RSP00894 Mean Expected Number 0.009 +strand -168 : -161 AATTCAAG AC RSP01015 Mean Expected Number 0.007 -strand -17 : -26 CAAATGAAcG AC RSP01033 Mean Expected Number 0.007 -strand -78 : -87 CCTTTTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: COL2 |LOCUS: AT3G02380 |PROD: zinc finger protein CONSTANS-LIKE 2 (COL2) |complement(487250..488700) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.33 C - 0.27 1 ctagatttgt tctcctttgt gaaggttatg agaaaaaaac ttttttgatg 51 attcatgacc ttgttcaaaa ctcagacagc cacaagatga tccaactact 101 tttaacaacc actaactctg cgccacgtgt atatctccaa agattctatc 151 tttcccctct caccacctag atatagtctc attagccttc cctcctttct 201 AATTACAATC TCTCCTTTTG CCAACAATCA TTGCTTAAAA AACACATACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -71 : -79 ACACGTGGC AC RSP00065 Mean Expected Number 0.000 -strand -73 : -81 ACGTGGCGC AC RSP00175 Mean Expected Number 0.001 -strand -72 : -79 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -70 : -79 tACACGTGGC AC RSP00524 Mean Expected Number 0.006 -strand -71 : -77 ACACGTG AC RSP00682 Mean Expected Number 0.001 +strand -79 : -70 GCCACGTGtA AC RSP00711 Mean Expected Number 0.001 +strand -43 : -32 TCTCACCAcCTA AC RSP00783 Mean Expected Number 0.000 -strand -70 : -79 TACACGTGGC AC RSP01031 Mean Expected Number 0.006 -strand -54 : -61 AGAATCTT AC RSP01034 Mean Expected Number 0.005 -strand -73 : -79 ACGTGGC AC RSP01255 Mean Expected Number 0.002 -strand -71 : -78 ACACGTGG AC RSP01711 Mean Expected Number 0.003 +strand -34 : -25 CTAGATATAG Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 64. Group TF: EmBP-1 /AC: RSP00065//OS: Triticum aestivum /GENE: Em/RE: Em1a /TF: EmBP-1 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 677. Group RE: Box 1 homolog /AC: RSP00711//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog /TF: unknown 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G02420 |PROD: the same as GENE |complement(495892..498841) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.31 C - 0.20 1 agggtttctt tcccaatgct ctgttttgtt cattttcttt ctttggataa 51 attgcataca aaccctcaaa gtttccagtc ttttgcaaag ttgtagttat 101 ttttatatta aatatcataa acaactgATT GCcaaaacgt cgtcgctctt 151 gcaaaagtcc acagatacta gtagtaagta aagtatagga aaagtggacc 201 AAAGAAACAA AACCCATACA AAAAAAGTCG AATCCAAATC TCTCTCTCCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.008 -strand -108 : -117 cAACTTTGCA AC RSP00860 Mean Expected Number 0.003 -strand -159 : -167 AGAAAGAAA AC RSP00864 Mean Expected Number 0.001 -strand +47 : +39 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +49 : +41 GGAGAGAGA AC RSP00961 Mean Expected Number 0.004 +strand -51 : -44 TGCAAAAG AC RSP00961 Mean Expected Number 0.005 -strand -114 : -121 TGCAAAAG AC RSP01209 Mean Expected Number 0.005 +strand -164 : -155 CTTTcTTTGG Totally 7 motifs of 6 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: cell division protein ftsH, putative |LOCUS: AT3G02450 |PROD: the same as GENE |complement(502714..505237) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.35 C - 0.18 1 acaatttaat tgggtatata tatatatata ggcgtcaaat taattatacc 51 aattcaaaaa aatcagtaac ctatttttta aaataagccc aaaatgaaag 101 atagcCCAAT agctaaaagg cccatgaggc catgactcga tttataatgc 151 ccaatgctta ttcatacagt ttttcctgtt ctgtgttttg ttttttatct 201 GTCAACCAAA AAAGAGCTTT TGCGAACTCT TCTTATCCTT TCAATTTAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00535 Mean Expected Number 0.001 -strand -168 : -184 GCCT-- +7 bp --TATATA AC RSP01015 Mean Expected Number 0.008 +strand -110 : -101 AAAATGAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: chaperonin, putative |LOCUS: AT3G02530 |PROD: the same as GENE |complement(528581..532589) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.28 C - 0.22 1 tttcttttgt atgtatgcga atacacaaca aaaagtgact ttggtcttcg 51 ttggactatt ttgtggaaaa gtcttatatc ccagaagccc aaaacttgta 101 aaatccgaag tctatggccc aagtagagtt ctccacatct gacaaaacga 151 catcgttcga tggaacttta cgaggcttct tttccctcac atcgtcctcc 201 GAGCCCTCAC TTGACAGAAC TCAGAAATTT GAAAGAGAAA TAAAAGAGAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G02550 |PROD: the same as GENE |complement(536512..538005) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +348 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.21 T - 0.25 C - 0.13 1 gatactttaa tcaacaacca tattaaatcg ttttagaacg aattagattg 51 tataatccag aatttataga ctattcacta gtaattaaaa aatggtaact 101 tgatatgtca cgtgtatgac acgcgcATTG Gatagagtgg ggacaaaaac 151 ataacttggg gaagaaacac aagaagcaaa accttgaatc agggtgaaga 201 AAAACAGCGG CGGTTCTGGG AAAATAAAGG AAGGATTTTG TAATTAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.004 +strand -82 : -76 ACACGCG AC RSP00524 Mean Expected Number 0.005 -strand -86 : -92 ACACGTG AC RSP00572 Mean Expected Number 0.007 +strand -98 : -91 ATATGTCA AC RSP00749 Mean Expected Number 0.002 +strand +35 : +46 ATTTTGTAATTA AC RSP00881 Mean Expected Number 0.007 +strand -191 : -182 ATCAACAACC AC RSP01092 Mean Expected Number 0.004 -strand -148 : -158 ATAcAATCTAA AC RSP01559 Mean Expected Number 0.009 +strand -80 : -75 ACGCGC Totally 7 motifs of 7 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G02555 |PROD: the same as GENE |complement(539712..541510) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +548 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.33 C - 0.25 1 atccctattt tggacggtct agatctaatc atacttaaaa tgggccgtta 51 aaaccaatgg gcccaatgta tactcttcct gggactagcc cattaaataa 101 ctccatagaa tataggcgat aattatcatc tcataaaacg atatcgtttt 151 tagtacacaa aaaccgacct tacttcacat ttttataaag tgcattcatt 201 ACATAGCCGC TCTGTTTCTT CTTCTCTTTC CCTCACCCTT ATCGCCGCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.005 -strand -184 : -189 CCGTCC AC RSP00295 Mean Expected Number 0.000 +strand -160 : -136 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -136 : -160 TGGGCC-- ** bp --GGCCCA AC RSP01032 Mean Expected Number 0.006 -strand -188 : -197 CCAAAATAGG AC RSP01033 Mean Expected Number 0.007 +strand -197 : -188 CCTATTTTGG AC RSP01205 Mean Expected Number 0.003 -strand -158 : -167 CCATTTTAAG Totally 6 motifs of 5 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 40S ribosomal protein S7 (RPS7B) |LOCUS: AT3G02560 |PROD: the same as GENE |541722..543341 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +626 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.33 C - 0.17 1 tttataaaaa tgtgaagtaa ggtcggtttt tgtgtactaa aaacgatatc 51 gttttatgag atgataatta tcgcctatat tctatggagt tatttaatgg 101 gctagtccca ggaagagtat acattgggcc cATTGGtttt aacggcccat 151 tttaagtatg attagatcta gaccgtccaa aatagggatc tcaaaaaacc 201 CTAAATATTT AAAGCTTTCC TTCACCAGCA TTGTATTGCC TCCCTGGAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +4 : -5 TTAGGGTTT AC RSP00295 Mean Expected Number 0.000 +strand -76 : -52 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -52 : -76 TGGGCC-- ** bp --GGCCCA AC RSP00369 Mean Expected Number 0.001 +strand -5 : +4 AAACCCTAA AC RSP01032 Mean Expected Number 0.006 +strand -24 : -15 CCAAAATAgG AC RSP01033 Mean Expected Number 0.004 -strand -15 : -24 CCTATTTTGG AC RSP01205 Mean Expected Number 0.007 +strand -54 : -45 CCaTTTTAAG AC RSP01303 Mean Expected Number 0.003 +strand -6 : +4 aAAACCCTAA Totally 8 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: STE1 |LOCUS: AT3G02580 |PROD: delta 7-sterol-C5-desaturase (STE1) |546910..548800 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +145 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.32 C - 0.15 1 atcaaaatgt gttttggtac tattatgttg aatatttccc acctttcatt 51 ttcattcata aacttggtga cgtggattta ttttgatata caagtaaaag 101 gttcaatttg taaatataac aaaatATTGG gagctatttc gataaaacca 151 aaacaatggg ccaagaatta aaaatttacc atgaacatga gagagtgaga 201 GAAGAAGATC GATCAATCAA TCATCAAACT CTCTGTGTGC CACATGCATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 -strand -125 : -134 TCCACGTCaC AC RSP00214 Mean Expected Number 0.001 +strand -133 : -126 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -126 : -133 CCACGTCA AC RSP00233 Mean Expected Number 0.005 -strand -125 : -134 TCcACGTCAC AC RSP01015 Mean Expected Number 0.007 -strand -149 : -158 aAAATGAAAG AC RSP01208 Mean Expected Number 0.000 -strand -42 : -53 CCATTGTTTTGG AC RSP01218 Mean Expected Number 0.000 -strand -42 : -53 CCATTGTTTTGG AC RSP01275 Mean Expected Number 0.003 -strand -125 : -134 TCCACGTCAc AC RSP01280 Mean Expected Number 0.000 +strand -135 : -125 GGTGACGTGGa AC RSP01458 Mean Expected Number 0.006 +strand -35 : -23 AaTTAAAAATTTA AC RSP01470 Mean Expected Number 0.009 -strand +51 : +42 TaATGCATGT AC RSP01729 Mean Expected Number 0.000 +strand -135 : -124 GGTGACGTGGAT AC RSP01734 Mean Expected Number 0.007 -strand -125 : -131 TCCACGT Totally 13 motifs of 13 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1537. Group TF: STF1/HY5 /AC: RSP01729//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LPP3 |LOCUS: AT3G02600 |PROD: |551358..554678 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +183 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.42 C - 0.18 1 tctccttttt gcttcttttt tttcacacga agcaaatcga ctagagtctg 51 gtaaattttc ttctgtaatt catttataaa aaaatcttct tttgcatatc 101 catgggggaa taattataaa ggtcgttact ttccacatgg gttttttttt 151 tggtagatat agcgaaacat ttatattgcc cactcccact tgtttgtgtt 201 GATTAGATTG TCCCTAGGAG TCACTGTTAT CGCTCTTTCA ATTACTGTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.005 +strand -18 : -12 CTCCCAC AC RSP00489 Mean Expected Number 0.009 -strand -42 : -51 TAtCTACCAA AC RSP00522 Mean Expected Number 0.009 +strand -15 : -9 CCACTTG AC RSP00629 Mean Expected Number 0.007 +strand -121 : -114 AAAAATCT AC RSP00961 Mean Expected Number 0.009 -strand -105 : -112 TGCAAAAG AC RSP01127 Mean Expected Number 0.007 -strand +47 : +30 CAGT-- +9 bp --AGCG Totally 6 motifs of 6 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: acyl-(acyl-carrier-protein) desaturase |LOCUS: AT3G02630 |PROD: the same as GENE |562038..564877 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.28 C - 0.18 1 aagtaaatgt aataaagaaa cgctaaaaga tcttgcgttt tagtgaaaca 51 ctgggttata actaccatat ggcccatggg cttgaaaatt aagcaaagaa 101 aatatctgag tggcatagac gtaattaaaa gagtagctga gggatATTGT 151 agagaagaaa aaagttgtat attaatgtcc ccttggctcg atcatcacgc 201 CCAAAGTTTC TTCTTCACCT TGTCTCTTTT CACAGTCTCA CACAGCATAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.010 -strand -102 : -112 TcTTTGCTTAA AC RSP00683 Mean Expected Number 0.002 -strand -14 : -23 GCCAAGgGGA AC RSP01030 Mean Expected Number 0.006 -strand +11 : +4 AGAAACTT AC RSP01641 Mean Expected Number 0.002 +strand +18 : +27 cCTTGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G02640 |PROD: the same as GENE |complement(564891..565715) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.27 C - 0.29 1 cccaacttgg cccattgggc ttgccagtct tgttctggaa caaaggaata 51 gcaaaaaaca ctagccgtta cacacacaac aacaactcac tctgtcggtg 101 atctgtcctt cacttctgta aagcctcaac ggtcatattt ggaaaatcag 151 accgtttaaa tcgctctcta cataaaccca aattcataac tcacccaatc 201 ACAATTCGCA AGCTATCTTC CTTTCTTCTT CGCAATCTCA AAATCCAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00394 Mean Expected Number 0.009 +strand -84 : -78 TGTAAAG AC RSP00862 Mean Expected Number 0.002 -strand +26 : +18 AGAAAGGAA AC RSP01134 Mean Expected Number 0.002 -strand -160 : -169 GTTCCAGAaC Totally 3 motifs of 3 different REs have been found Description of REs found 377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: integral membrane family protein |LOCUS: AT3G02690 |PROD: the same as GENE |579593..582136 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.15 1 gcatgattct ggatcagtgg atcactagga actaaacaaa atcttgtctt 51 ttattttttg ttcttcatga gttaaaaaat gatgtatgta tagtgagtga 101 tctttggtat ctctgatgaa aacaaaaATT GAttatctct tttcagaaat 151 ttaaaaacag aaaacatgtg gccattactt ctctgttaac tcgaaaagat 201 ACAAAATTTA TCCTTTCTCT TTGTTCTAAG TACAAGCAAC AATGGAGTGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.003 +strand +32 : +41 aCAAGCAACA AC RSP01641 Mean Expected Number 0.005 +strand -159 : -150 TCTTGTCTtT Totally 2 motifs of 2 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: NC domain-containing protein, contains Pfam domain |LOCUS: AT3G02700 |PROD: the same as GENE |complement(581548..582952) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.33 C - 0.11 1 ggtttaaggg atgaaataat ggtgacgact gacgagtctg aattttaatt 51 tgggcttttt attaaatgaa gagtcaatgt catttgaggc ccaatggtgt 101 aacggtgtcg tttaagattt aaGCAATtag aatttaaatt tctaataaac 151 tatatttttt ctggggtcaa aaactcaaaa gtcaaaagat caatgtcttt 201 ATGGAACTTT AAAAAAGTTA TGATGTTATC CAAGGAAGAT GGAAAACCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -88 : -101 AAACGACACCGTTa AC RSP01195 Mean Expected Number 0.001 +strand -50 : -38 tATATTTTTTCTG AC RSP01598 Mean Expected Number 0.008 +strand -123 : -116 TGTCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: thioredoxin, putative |LOCUS: AT3G02730 |PROD: the same as GENE |complement(588415..589692) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.31 C - 0.25 1 cgtaatttcg cagtaagaaa cataaatatc aatcttaatt cctcaagaat 51 tctacacctc ccgttccatc tatcacgaaa acaaataatt acagtaagta 101 cccccgaata tccttgttca tccgaaGCAA Ttcgaggata ataccgtctt 151 tttctcttta aaatccaatt aacataaaat aaatatttgc tcagtccgtt 201 GAGACCTCAC ACACACTCTC TCTCTGATCA TTCAACTTTT CGAAATTTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.003 -strand +25 : +17 AGAGAGAGA AC RSP01016 Mean Expected Number 0.008 +strand -185 : -178 AGAAACAT Totally 2 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: aspartyl protease family protein |LOCUS: AT3G02740 |PROD: the same as GENE |590517..593174 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.11 T - 0.48 C - 0.18 1 tttttgtagt catggaatct tattatatag tacataattt tctagccagt 51 cttaaattaa tttcaaaatg ttgtttagtt aatgattaaa atactttttt 101 atttggaaag taCCAATttt tcttcttctt cttctttgtc ctaaatcgta 151 ctccaccgcc aaactatact tttctttctt ttgctttttt tcttctcttc 201 ATTTTTTTCG TTTGGATTTC TCAACTAACT TAGTTAGGGA TATCTCCGGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.004 -strand -182 : -190 GATTCCATG AC RSP00593 Mean Expected Number 0.003 +strand -186 : -178 GAATCTTAT AC RSP00749 Mean Expected Number 0.003 -strand -132 : -143 ATTTTGaAATTA AC RSP00960 Mean Expected Number 0.002 +strand +22 : +29 CAACTAAC Totally 4 motifs of 4 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G02770 |PROD: the same as GENE |complement(600900..602218) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +327 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.28 C - 0.19 1 ttgtgagatg tacaaaaagc gtcgaggaaa aggataacaa ggaaacagag 51 tcgaaaccag agaaaaggca acgcaaagat tccttttttc gaagcttaac 101 gacaacccac cttccatctg atttaagtaa agttaaaagt cactaattta 151 atattattga acgaccgaaa caagtatgtt gatgactttg ttctccttta 201 AATTATCATC ACTTCATTTC TCAGAGATTT ACGCACACAG AGTTCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.003 +strand -95 : -86 CCCACCTtCC AC RSP01033 Mean Expected Number 0.003 +strand -119 : -110 CCTTTTTTCG Totally 2 motifs of 2 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: immediate-early fungal elicitor family protein |LOCUS: AT3G02840 |PROD: the same as GENE |618416..619693 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.06 T - 0.31 C - 0.24 1 caacattcca attcagttca caaacctaaa tcaaacgttc catttcatac 51 cttttttctc tttcaagctt atacaacctt tgaccatgtc tcactttatt 101 aataagtaca aaaccacctt acattacatg catatatata aataaaacac 151 gttaaggaac atatatttat acaaatccca taaaccccat ttcattcttc 201 ATCGAATAGT CGAAAAATAT TTGAACTTTC TTAGGAAACC AAACCAACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.002 +strand -151 : -141 CCTTTTtTCTC Totally 1 motifs of 1 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G02860 |PROD: the same as GENE |complement(625187..627374) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +210 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.21 T - 0.32 C - 0.17 1 tcatatgttt ggtattgaat gatataattc tgttcttcca tgtagttgat 51 ctttgtaatc gagtttgcat tttttttttt tttataaaag gtggagttta 101 aggtattttg tgatccatac taaattaaca acagaggaaa atggggataa 151 tgagtccggc ccagttacga ctaacgaccc agaagcatcc cgaaagtctc 201 AAGTCTAATC CCGAGTTGGA TCGACCCGAC CCGTAAAAGA GAAGAGATTG 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G02870 |PROD: the same as GENE |complement(627519..629852) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.32 C - 0.16 1 gtccaatagt ctcaagtcca aacccgactc gggtctgtcc gacccggaaa 51 agagaactga ttacagaatg cgggttttgt caagagaaag ttggatgata 101 aaattgaggt gaaatctaat cttcaaatga tcATTGGtta gctttttgta 151 taacggattt tctgaaatcc tcttatttcc catatcggac cgtgattatt 201 GGGTGATTTC GGATGCCTAA TTGGGTAATT AATATAATAC AGTATAAGAT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G02910 |PROD: the same as GENE |649821..650928 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.32 C - 0.18 1 aaaatagcag cataattatt taaagggaac ctttaaaatt acaacttggg 51 gcatcatttt ttttgtcatt cacacgtaat aaccacaatt tataaatttg 101 aataataact tattacagat ttgaaaaaaa aataataata tgcagagcag 151 aggaaatcaa gtgctatata aacgcgtcat cggtttaacc caaaatattc 201 AAAGCCCTAA AAATCAGAGA TTCCATTTTC TCTTATCTCT CTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +50 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +48 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +46 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +44 : +36 AGAGAGAGA AC RSP01261 Mean Expected Number 0.006 -strand -122 : -129 TTACGTGT AC RSP01283 Mean Expected Number 0.000 -strand +49 : +33 GAGAGAGAGAGAGAtAA Totally 6 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: replication protein-related |LOCUS: AT3G02920 |PROD: the same as GENE |complement(651680..654357) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +161 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.33 C - 0.10 1 aagttgacct ggctccttcc ataaaagcag tttagtaaat aaatggactg 51 taatcagatt gatatttgaa aaaaaatgct tctgaaaaca aaaattcact 101 tggaaaactt taaaaattag tcgcgggaaa atgagagaga tttttggcgg 151 gatctctata taattttcca ttagttatta attatttatt ttatgagagt 201 AACTTGAGAT TTGAGAATAA GAAAAGTTGA AATTTGTAAA AGATATGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.002 -strand -71 : -78 TTTCCCGC AC RSP00234 Mean Expected Number 0.001 -strand -173 : -182 GCTTTTATGG AC RSP00877 Mean Expected Number 0.000 -strand -50 : -58 CCCGCCAAA AC RSP00988 Mean Expected Number 0.000 -strand -48 : -59 aTCCCGCCAAAA Totally 4 motifs of 4 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: NADH:ubiquinone oxidoreductase family protein |LOCUS: AT3G03100 |PROD: the same as GENE |complement(705388..707657) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.26 C - 0.20 1 tgtatgatct aatgctttga ggaaagtggg aaaagcagat ttaaatcttg 51 tatttcttga tataccaaat catagtagaa aatgtatatt catatgcttc 101 tctgccacat catcatgggg aaggccatag cgagcaagtg gcccaggtaa 151 acacaaagcg tagcccaaca aatacaaaac gatgcgttta gcaatcgtca 201 TCATGTCCCT TGTTATTTCG ACAACGAAAT CAAATCCCGA TTCCGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.004 -strand -140 : -147 ATCAAGAA AC RSP00847 Mean Expected Number 0.004 +strand -96 : -87 CCACaTCATC AC RSP00914 Mean Expected Number 0.004 -strand -87 : -96 GATGATGTGG AC RSP00915 Mean Expected Number 0.003 -strand -87 : -96 GATGATGTGG Totally 4 motifs of 4 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATARFB1C |LOCUS: AT3G03120 |PROD: ADP-ribosylation factor, putative |717186..719322 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +166 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.32 C - 0.18 1 gttaggtttt ctaaattaca atcttttttg ttggatttgt tactattaaa 51 tgaaaaatgt ttaggatctc aaaattaatc gaacctcaaa ccggttataa 101 accggtctta atttcaaaga cttgtaaacc gaaataaaaa tgtaagacca 151 agtggaatct ctctatactg tacataagga atccattgta ccgaaaacgc 201 AACCTTTGCT TTCTTGGGAA ACTCTCTGCA ATTCCTGGAG AAATCGACCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.006 -strand -46 : -52 CCACTTG AC RSP00683 Mean Expected Number 0.002 +strand -54 : -45 aCCAAGTGGA AC RSP01600 Mean Expected Number 0.009 +strand -89 : -82 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G03160 |PROD: the same as GENE |729775..730474 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.32 C - 0.25 1 cgttgccgtt tcgcttttga cgccgttact tgacaaatcg acactgtgtg 51 aatctaaagc cgactttaaa gaaacggact acttaatata tctatacttt 101 tcttttgggc cgagttttag caaattcagc ccatttaagc ccattttccc 151 tcttaatcga cgtgcgacac gcgttgaccg ccacgtgtat cacgttcctt 201 ACATCTTCTC TTTTCTTCCC CAGCAAAAAA TGAGTCTGCA AAATAGAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -13 : -21 ACACGTGGC AC RSP00143 Mean Expected Number 0.004 -strand -26 : -35 aACGCGTGTC AC RSP00175 Mean Expected Number 0.001 -strand -14 : -21 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -12 : -21 tACACGTGGC AC RSP00523 Mean Expected Number 0.007 +strand -34 : -28 ACACGCG AC RSP00682 Mean Expected Number 0.002 +strand -21 : -12 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -12 : -21 TACACGTGGC AC RSP00880 Mean Expected Number 0.004 -strand -190 : -199 aAACGGCAAC AC RSP01034 Mean Expected Number 0.009 -strand -15 : -21 ACGTGGC AC RSP01255 Mean Expected Number 0.003 -strand -13 : -20 ACACGTGG AC RSP01476 Mean Expected Number 0.010 -strand -131 : -138 TTTAAAGT AC RSP01687 Mean Expected Number 0.008 -strand -139 : -145 CGGCTTT Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G03170 |PROD: the same as GENE |731898..732882 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +175 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.32 C - 0.25 1 gcctcgttgt tcgtgccatc tgtttccacc caccacgtaa acaagtattt 51 aaactccgtc catttcttca ctctttccac gtgtcgtcat cttgttccat 101 cattcccaaa atatcttatc tctgacataa aaaaataccc tacttattat 151 ataaagaccg caaaaccaga acccatgttc atgggcgtga catgttattt 201 GACAAACAGA GCTCATTAGA TAATGTTTTA AATTCGAATA TCCATTGCGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.007 -strand -116 : -125 GACACGTgGA AC RSP00114 Mean Expected Number 0.007 +strand -121 : -112 CgTGTCGTCA AC RSP00188 Mean Expected Number 0.004 +strand -125 : -116 TCcACGTGTC AC RSP00204 Mean Expected Number 0.002 -strand -116 : -125 GACACGTGGa AC RSP00340 Mean Expected Number 0.006 +strand -125 : -116 TCCACGTGTC AC RSP00524 Mean Expected Number 0.008 -strand -117 : -123 ACACGTG AC RSP00682 Mean Expected Number 0.002 -strand -116 : -125 GaCACGTGGA AC RSP01035 Mean Expected Number 0.008 +strand -122 : -116 ACGTGTC AC RSP01053 Mean Expected Number 0.005 -strand -81 : -89 GATAAGATA AC RSP01255 Mean Expected Number 0.002 -strand -117 : -124 ACACGTGG AC RSP01274 Mean Expected Number 0.006 +strand -125 : -116 TCCACGTgTC Totally 11 motifs of 11 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATEXPA13 |LOCUS: AT3G03220 |PROD: expansin, putative (EXP13) |complement(742361..744054) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.27 C - 0.19 1 gtcggatgga gacacatgaa cgaaaggtaa agttgaccca aaattgttac 51 tgaagtcctc actttgatca cgagatttgg gttttgtgat ttgggcctta 101 ccctaaccca tttcgATTGA gggcatttta gtcattttat ataaaccgac 151 aaaccggtaa aagcaaaatg ttttcccact aaaagactga aaaaaacact 201 AAACCAAAAT TAAATCATCA AAAATCAAAA TCTCTAAAAT CAAAAATTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.004 +strand -50 : -39 AAACCGgTAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G03320 |PROD: the same as GENE |781722..783471 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.31 C - 0.23 1 aatattcaat tcggatcttt ctacagagtt caggagaaaa tggtaagtgg 51 gacttatcag aggtacatta gtcaacaatg aggatttctg agaatatgcc 101 atctgtgact gtgactgtct acacgcaagc ttcacgtgct cctcacgtgt 151 caccttctag atacctgact tatcgctctg atcttccgtc ttcaaacgac 201 AACGTCTGAT CTCTGATCTT CCGTTTTAAA ACGACATCAA GGTGTTACTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.004 +strand -59 : -50 CtCACGTGTC AC RSP00079 Mean Expected Number 0.002 -strand -150 : -159 CCCACtTACC AC RSP00817 Mean Expected Number 0.004 +strand -70 : -61 TtCACGTGCT AC RSP00949 Mean Expected Number 0.005 +strand -132 : -125 TAGTCAAC Totally 4 motifs of 4 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LUC7 N_terminus domain-containing protein |LOCUS: AT3G03340 |PROD: the same as GENE |786327..790076 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.28 C - 0.18 1 ccgagagaga agaagagtag agtcagcatt ttctcggatt gaagcaacca 51 gcgagagacc aagtcttctt acccgtgggc aaaatatgtt gacagaaata 101 aatgtaggag tagaacataa attattaata tatagggacc tgtatGCAAT 151 taatcttata taccaaaatc ttattacatc cgaatgccat tgttcctatc 201 ATTGTGTTGT CTTTCGATCA AAAAACCCCA AATCTCTGTT TGCAGAGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01692 Mean Expected Number 0.004 +strand +13 : +20 TTCGATCA Totally 1 motifs of 1 different REs have been found Description of REs found 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G03550 |PROD: the same as GENE |complement(850115..851597) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.48 G - 0.09 T - 0.26 C - 0.17 1 ctttaaaaaa aatggaagca taaagagaaa gctaaagaat aaaaatgaat 51 aaagcaaatt ctacaccttt attcatacta gaaataaaaa tttgataaag 101 tagaacattc actataaaca tcatTCAATt agtattaaca ccatcatgca 151 aaagctttca tgaacatata tatttattca ttatctcctc taataatacc 201 AATTAACTCG AAATAAAAAA ATAGACACTT ACCAGACAAA AGCAGAGCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00961 Mean Expected Number 0.005 +strand -54 : -47 TGCAAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G03570 |PROD: the same as GENE |856903..860476 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.29 C - 0.19 1 aaaatagtct tccatctaac tcaaacctca atattgttga ctttgatcta 51 aaatacttat aacaatcaga ttaatgacaa atcaaaattt tcgacccaaa 101 acataattta tactcctaat ttgtaaatta caccaaaaaa gtttaattat 151 aaaaaaacca gaatcaatta gacaaatttc gttggtaaac cgtccggtac 201 AAGATTTTTA GTCATCCAAA AGGTCGATTC GCCGATCTAG AAGACGACGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.009 -strand +9 : +2 AAAAATCT Totally 1 motifs of 1 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SWIB complex BAF60b domain-containing protein |LOCUS: AT3G03590 |PROD: the same as GENE |complement(865190..867015) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +339 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.13 T - 0.39 C - 0.23 1 tagttgcgat gtcgttgtgc ttcagagatt ttctcgatgg aacaaaccga 51 cgttgtttaa gctctcttaa ctcagttacc atcctctcca agaattatca 101 ttgttagctt ttggttttct ccttattATT GTcactatag cttgtcaaca 151 ataccttatt agttattacc ttacctcgac agaatcaaag catcttcctc 201 AGTCATATCA TAACCCTTTC TTTATCTCTG AGCAATTTTA TCATTACAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00987 Mean Expected Number 0.007 +strand -128 : -119 CAGtTACCAT AC RSP01091 Mean Expected Number 0.003 +strand -22 : -12 AcAGAATCAAA AC RSP01109 Mean Expected Number 0.008 -strand -103 : -110 ATAATTCT Totally 3 motifs of 3 different REs have been found Description of REs found 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RPS2 |LOCUS: AT3G03600 |PROD: ribosomal protein S2, mitochondrial (RPS2) |complement(867669..868585) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.17 T - 0.32 C - 0.29 1 ctcttatacg ttactattta ttttatttct cttttgttgg tcaacgaccc 51 ggtttgtcat ccggtttacg atgtttggtt taggcatctg aaatctaccg 101 aaatgggccg gtaattagct catacccaac acgaccagac cagaccgacc 151 cgacccgacg gctccagatt catccatgtt tcatcttcct catcagatct 201 AATTCAATCT GCGAATTTCT CTTAAACCCT AACCCTCTCG CTGCCGTCCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +32 : +24 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +24 : +32 AAACCCTAA AC RSP00858 Mean Expected Number 0.002 +strand -91 : -84 GGTAATTA AC RSP01209 Mean Expected Number 0.009 +strand -170 : -161 CTTTTGTTGG AC RSP01303 Mean Expected Number 0.003 +strand +23 : +32 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand +23 : +32 TaAACCCTAA AC RSP01470 Mean Expected Number 0.009 +strand -31 : -22 TCATcCATGT AC RSP01497 Mean Expected Number 0.004 -strand -39 : -48 GCCGTCGGgT Totally 8 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peroxidase, putative |LOCUS: AT3G03670 |PROD: the same as GENE |complement(901862..903384) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.39 C - 0.16 1 cgccttatgg gtttatatat aaatttacct ctcttaattt atatgtattt 51 gactgaccta ttcgacatat acaagatgta ttaagttcct tttaaaatta 101 attttcttta tagaccgtcc attttggcgt atatatatat agtATTGGtt 151 tatctaatta agaggtatca taaacctttc tacaagaaca tagcactatt 201 ACATTGCAAC ACTTTCTACA AAAACAAGAT GAAGATTGCA ACGTTTTCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.008 +strand -86 : -81 CCGTCC AC RSP00743 Mean Expected Number 0.001 -strand -168 : -179 GAGaGGTAAATT AC RSP01094 Mean Expected Number 0.007 -strand -41 : -52 TAATTaGATAAA Totally 3 motifs of 3 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 705. Group RE: box 3 /Group TF: GT-1 /AC: RSP00743//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 3 /TF: GT-1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATBPM4 |LOCUS: AT3G03740 |PROD: speckle-type POZ protein-related |complement(936885..939815) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.37 C - 0.18 1 cttcggtggt ggtgactctc gcagtcgctg catatttttt ctcagccagc 51 gatatacaaa cgacgtcgtt gcgtttaatt ctatttatat ccttaaattc 101 tattttaatt tcacttcagt aagaattttt taaagaaaaa tggcgagttt 151 ttttgtgtta atcataacta tagatttact accgtcgctt tggtctgtgt 201 AATGAAATCT GTCATTTTCA CAGAGGAAAA AAACTTACAA AGACAAAATC 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein, predicted using genefinder |LOCUS: AT3G03870 |PROD: the same as GENE |995224..997417 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +303 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.32 C - 0.22 1 gaagacttca tgaaagagga agaattaagg accttgtcaa agaaggcaat 51 caatggttct tcttcgaatg gggtccccaa aggaccactt cttcttttgt 101 cacttcATTG Cgttagataa gctctaattc attttcgtca cccacatctt 151 caaatcaatt cattactttt tataccacac ggcacacgcg ttatcaaagc 201 ATATTGTGTT GCTTCGTTTA AGAAACGAAA TTAGGGTCTC AATCTTATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.006 +strand -17 : -11 ACACGCG AC RSP00654 Mean Expected Number 0.007 +strand -62 : -53 CACCCACaTC AC RSP00792 Mean Expected Number 0.005 -strand +16 : +7 CgAAGCAACA AC RSP01602 Mean Expected Number 0.007 +strand +37 : +44 TCTCAATC Totally 4 motifs of 4 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Gar1 RNA-binding region family protein |LOCUS: AT3G03920 |PROD: the same as GENE |complement(1009005..1010477) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.22 C - 0.23 1 tataaacagt catgatcaga tctagaccgt ccaaaatagg gatctcaaaa 51 acaacaaatt tcaagaagca cttgtaacgg tcagagatgg agaaccgatt 101 tggtTCAATg ttagatagat atctggttca actaaccaaa cccggtcgaa 151 cgattacaga aaaaccctaa atacccagag tcttctacca tttgagcgtc 201 GTCGCTCTCA ATTAAACCCT AAAACCCTCC TCAGAAGAGA GGCAGAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand +22 : +14 TTAGGGTTT AC RSP00279 Mean Expected Number 0.004 -strand -31 : -39 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand -39 : -31 AAACCCTAA AC RSP00369 Mean Expected Number 0.004 +strand +14 : +22 AAACCCTAA AC RSP01303 Mean Expected Number 0.008 +strand -40 : -31 aAAACCCTAA AC RSP01303 Mean Expected Number 0.008 +strand +13 : +22 TAAACCCTAA AC RSP01304 Mean Expected Number 0.005 +strand +13 : +22 TaAACCCTAA Totally 7 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G03950 |PROD: the same as GENE |1021267..1024016 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +242 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.32 C - 0.15 1 aagcaaaagt cctaaaagtg tagttaagct ttactgattc gctatattga 51 ttttaagtta agaagaaaaa gaggtctcac taataaaagc aatcaacgtc 101 aaattttcag aatcttctcg tgtgacgaaa aatcgtcatt aagaagagga 151 gccttatctt tttgggttaa aggagcaaaa aaatcgaaat ttgtcgctta 201 GAATTCCTCG TAAATTTGAC CCATTTGGGG GCATTTCTGT TCTTTGTTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 -strand -179 : -189 TACACTTTTaG AC RSP01031 Mean Expected Number 0.009 +strand -92 : -85 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GAPC |LOCUS: AT3G04120 |PROD: glyceraldehyde-3-phosphate dehydrogenase |1080960..1083537 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.28 C - 0.25 1 ttccagatta gcgcgtgaga tgcagttgcc atgtctcgcc tcaggaatga 51 cgacatttgc caaaataaca gagctacaac ggtaaataag gaaaatgatt 101 aagggcaatt tggtctttta ggttaagaaa agtATTGAat cagatctgac 151 tttttggcca agaaaaactc tcagccacta gatcattccg acccctcctc 201 CACGTTCTTC TCTCTTTTAA ATAACCTCTT CACGGAACCC TTCTCACTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00621 Mean Expected Number 0.001 +strand -9 : -1 CCCCTCCTC AC RSP00897 Mean Expected Number 0.000 +strand -155 : -143 AATGACGaCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown 828. Group RE: PAL04 /AC: RSP00897//OS: Bean yellow dwarf virus (Mastrevirus) /GENE: Intergenic Region/RE: PAL04 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: C2 domain-containing protein |LOCUS: AT3G04360 |PROD: the same as GENE |complement(1157011..1158316) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.31 C - 0.27 1 tcaacataga ccaaagagtc aaagaaataa tgtctgtctc cataaagtct 51 ccaactttta taacaaattt tccgttgaat atgacagtaa ataaaccaac 101 ggtctagttc ttatcatgtc taaaaaccac aagctccttc ctcatcttac 151 gctcccctct ttacctctcc ttttattctc cttctcattc tcctctcaac 201 AACTGATCGT ATAATCATTC TCACGGAGAC GAGTGACCAA AACAAGGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.001 -strand -96 : -104 AGACCGTTG AC RSP01032 Mean Expected Number 0.009 +strand +37 : +46 CCAAAACAAG AC RSP01209 Mean Expected Number 0.008 -strand +46 : +37 CTTGTTTTGG Totally 3 motifs of 3 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: EMB2171 |LOCUS: AT3G04400 |PROD: 60S ribosomal protein L23 (RPL23C) |1167282..1168663 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.27 C - 0.17 1 ttacattcaa aatccttttt gataaaaaaa ataaaaaaat tcaaaatcct 51 ttatgatata ttgggcctaa gatgatttcc aaaaaaaaga tgatgagaaa 101 agaaagagaa cattATTGGg cttattgtta aattatttcg gcccataaaa 151 taaagtccag gtcagctcac aatacatgaa gaaaacccta gttcaagcgt 201 ATATAAACCC TCTCGGCGCT GCCATTGAAA CTCTTTCAAG GAGAGAGCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.004 +strand -79 : -68 TTATTGTtAAAT AC RSP00861 Mean Expected Number 0.004 +strand -100 : -92 AGAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G04470 |PROD: the same as GENE |complement(1189646..1192644) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +785 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.16 1 tcgataaata tgaagcatcc tattcctatg gttgattata tgaatctttt 51 atgtcacaca ccctattacg acaggtttta atgataccca catcacacgt 101 gtataagtta aatGCAATga taacatcctt tactctgaat acagatacat 151 ttgtggctaa aaaattgtaa atgcaaatct ttggactttg gttcagaaat 201 GAAAACAAAT GTATTTTTTA TTCGAAACTG TGTCTTAAAA AGAATCCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.006 +strand -106 : -100 ACACGTG AC RSP00524 Mean Expected Number 0.005 -strand -99 : -105 ACACGTG AC RSP00872 Mean Expected Number 0.009 -strand -141 : -150 TGTGTGACAT AC RSP00933 Mean Expected Number 0.008 -strand -30 : -42 TTTAcAATTTTTT AC RSP01256 Mean Expected Number 0.002 +strand -106 : -99 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -99 : -106 ACACGTGT AC RSP01469 Mean Expected Number 0.007 +strand -108 : -99 TCACAcGTGT Totally 7 motifs of 5 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: threonine aldolase family protein |LOCUS: AT3G04520 |PROD: the same as GENE |complement(1217248..1219765) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.31 C - 0.21 1 acaactaaaa agtatagact gaaaaacaag gaaactagta cagtataagt 51 taagaaatta ggcaaaaacg ttaagaaaac cttactttac caatttgtca 101 taatgcatcc aacacttatt tggttggacc gatcttcttt ctataagatt 151 ccctgtcgtc atttcgtatt tgatttgatc actcattctc tcaaccattt 201 GAGTCACCCG AAGCACATCT CTTTTTATCT CTTCGCCAAG AAAACAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.004 +strand -49 : -40 CcTGTCGTCA AC RSP00593 Mean Expected Number 0.003 -strand -50 : -58 GAATCTTAT Totally 2 motifs of 2 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-binding protein-related |LOCUS: AT3G04570 |PROD: the same as GENE |1230992..1232334 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +235 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.11 T - 0.49 C - 0.17 1 tattgtatcc tatttgtaat acgacttttt ttctgtctta aatataatta 51 tgtcactctc tcaagccttg agttgaggga tttgttttaa atttttattt 101 cttataaaca ctatacgtat acatgtatgt gtatcacata tacatatgct 151 tccacttatt tttataagtt agcttccatt acatcttttc tctttcttgc 201 TTAGTATCAT TCTTTGTCGT GTTCTTTTAA TTAACCTTTT GCAATTTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00961 Mean Expected Number 0.010 -strand +43 : +36 TGCAAAAG AC RSP00985 Mean Expected Number 0.007 +strand -34 : -25 AGTTAGcTTC Totally 2 motifs of 2 different REs have been found Description of REs found 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: WDL1 |LOCUS: AT3G04630 |PROD: expressed protein |1258637..1260874 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +600 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.48 G - 0.12 T - 0.24 C - 0.16 1 aaaagcgcca ataaaatcca aacaaaatta aagtaaaccg atttgaaaaa 51 taatatatta aatttgaaaa atgcaaagtc ccaataaata accaacagct 101 taaacaaatc aaacaccatt ccaaaatagt caccgcccaa aaaaaaaaaa 151 aaaaaaaaaa atcctttttt tctcttcttg agagagagaa agagagaggg 201 AGACAAGTTT GTTCTGGATA AAAAGACAAT TCATTTCTAT TTTAATTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.008 +strand -91 : -84 CAAACACC AC RSP00040 Mean Expected Number 0.003 -strand +13 : +7 AACAAAC AC RSP00115 Mean Expected Number 0.002 -strand +40 : +30 ATAGAAATgAA AC RSP00861 Mean Expected Number 0.005 +strand -14 : -6 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -20 : -12 AGAGAGAGA Totally 5 motifs of 5 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ankyrin repeat family protein |LOCUS: AT3G04710 |PROD: the same as GENE |1278085..1281124 |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.31 C - 0.14 1 gaaaataagc ccattttgat ctaacgttag aatgaaaatg aagagatttg 51 agaagtcagg gtgtattttt tacaaaacgt attattgggt gtattttgta 101 atagttaaat atatgagggt ctaagattca aatttattaa aagataacca 151 aaaaaaaacc tctggaatct tcttaaaacc tagaagcctc cgactccgac 201 CAACTGAAAA ATTAAAAGGC AAAAGCTTTT TTTCAGATTT CTGATAATCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01702 Mean Expected Number 0.008 +strand -127 : -118 AAaACGTATT Totally 1 motifs of 1 different REs have been found Description of REs found 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: IAA16 |LOCUS: AT3G04730 |PROD: |complement(1288618..1290608) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +187 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.11 T - 0.29 C - 0.34 1 tgtgccaagt tggcctttgc ccactggctt ggccgcaatt attctcagga 51 aaatgacgcc attcgtgaca tcattctctc ccgacaacac tccttacggt 101 ccaaCCAATc ccagcatcca cctggcaaca tcacctccgt tcaaataatc 151 atcctcaatg atcaattcca tatataattt tataccacac acgatccaat 201 ATTTAGCCCT TTGTTTCTCT ACACACATCT CACATCCCCC TATCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.002 +strand -105 : -98 ACGGTCCA AC RSP00377 Mean Expected Number 0.001 +strand -98 : -89 AACCAATCCC AC RSP00683 Mean Expected Number 0.009 -strand -75 : -84 GCCAgGTGGA AC RSP00850 Mean Expected Number 0.010 -strand -187 : -192 GCCAAC AC RSP00864 Mean Expected Number 0.007 -strand +51 : +43 AGAGAGAGA AC RSP00878 Mean Expected Number 0.003 -strand -76 : -83 CCAGGTGG AC RSP00897 Mean Expected Number 0.000 -strand -138 : -150 AATGgCGTCATTT AC RSP01017 Mean Expected Number 0.006 -strand +18 : +11 AGAAACAA Totally 8 motifs of 8 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1 828. Group RE: PAL04 /AC: RSP00897//OS: Bean yellow dwarf virus (Mastrevirus) /GENE: Intergenic Region/RE: PAL04 /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ribose 5-phosphate isomerase-related |LOCUS: AT3G04790 |PROD: the same as GENE |1313324..1314369 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.06 T - 0.30 C - 0.29 1 tataactctg ttctcaaaga aacaaaaacg acatcgtata tttaacactc 51 tgattggttt agcaggttat tatcttcacc aacccaaata caacaacctt 101 aaaactagta ttCCAATact accctcaaac caactacaaa actctataac 151 ttgccactaa accttcctct tccactcaaa agtcaaaaac caaacctttc 201 GATTTCATTT TATTTCTTCT CCAACCATTC TCAATCCTCT CTCTCCAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.001 -strand -144 : -150 CCAATCA AC RSP00316 Mean Expected Number 0.008 -strand -142 : -147 AACCAA AC RSP00865 Mean Expected Number 0.004 -strand +46 : +38 GGAGAGAGA AC RSP01017 Mean Expected Number 0.008 +strand -183 : -176 AGAAACAA AC RSP01509 Mean Expected Number 0.000 -strand -143 : -151 ACCAATCAG Totally 5 motifs of 5 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 302. Group RE: REalpha /AC: RSP00316//OS: Lemna gibba /GENE: Lhcb2*1/RE: REalpha /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G04830 |PROD: the same as GENE |1326240..1329370 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.29 C - 0.21 1 tattgatatt tcaatcccaa caaaccgata aatatattct caaccaaatt 51 gatataccaa tgaatcagat gttttgttaa aacgcagcgt ttcgttcgtc 101 aatatgctct aagtttaaac cagatcggtg cgaatattaa accgaaccgg 151 ttcatgtcaa tgtcttcttt gtagaaagag actttcctga tcgaccttcc 201 ACTACTAACA GATCCACAAA TTTCATAAGG TTCAGAGCAA ATCGGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.002 +strand -179 : -168 AAACCGATAAAt AC RSP00861 Mean Expected Number 0.001 +strand -28 : -20 AGAAAGAGA AC RSP00941 Mean Expected Number 0.009 +strand -192 : -185 TTTCAATC AC RSP01594 Mean Expected Number 0.009 -strand -185 : -192 GATTGAAA Totally 4 motifs of 4 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G04890 |PROD: the same as GENE |1347652..1349205 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.25 C - 0.18 1 tacactactc ttccacattt caccctatta agttatttta acacaaaagg 51 accctccaat tttaaatgaa ataaggtact ataaattaat aaataaaagt 101 tttagggtgg aaacaaaatt ataagggaac aacatgccga caaaaaaaaa 151 aaaaaaaggg aacaacataa acatttttaa tataaacatg cggcggagtc 201 GTGGCGGCCT TTAAAATAAA ATTGCCGCCG ACGACTATTG TAAGTCACTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.009 -strand +3 : -3 CACGAC AC RSP00260 Mean Expected Number 0.006 +strand -100 : -94 TTTAGGG AC RSP00438 Mean Expected Number 0.004 +strand +3 : +8 GGCGGC AC RSP00438 Mean Expected Number 0.005 -strand +29 : +24 GGCGGC AC RSP00807 Mean Expected Number 0.005 +strand +24 : +29 GCCGCC AC RSP00807 Mean Expected Number 0.004 -strand +8 : +3 GCCGCC AC RSP01305 Mean Expected Number 0.001 -strand -90 : -99 TCCACCCTAA Totally 7 motifs of 5 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1198. Group RE: Telo box /AC: RSP01305//OS: Nicotiana tabacum /GENE: Thio h2/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 40S ribosomal protein S24 (RPS24A) |LOCUS: AT3G04920 |PROD: the same as GENE |1360888..1362301 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.28 C - 0.21 1 ctttaaccaa tgtccaatga caattgtttg tgacactagg ctataaatat 51 tttaggccca gtgggcttcg ttttattttc ccatgtaaat gtttattaat 101 caaacctaga aaaccaaacg gctaggatta agtaagccca aattaaaagt 151 tgaggcccat acaaagagaa cacaaaagaa accctaagga acttgtaact 201 ATATAAAAGC TCCGACTTCG ATTCGGCGTC TCTTTCCTTC ACCTGAGCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand -14 : -22 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -22 : -14 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -146 : -14 GGCCCA-- ** bp --ACCCTAA AC RSP01296 Mean Expected Number 0.005 +strand -160 : -152 CTATAAATA AC RSP01303 Mean Expected Number 0.006 +strand -23 : -14 gAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATCYSD1 |LOCUS: AT3G04940 |PROD: cysteine synthase |1365186..1367750 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +501 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.35 C - 0.11 1 atttaaagat tcaagaaggc agaaacttgt ccacgtgacg aggcaaagaa 51 tgttaggtag gtttgttatt gactttatag tttatacaat gattttaaca 101 aaatacctat ggaagataca tgattatttt ttataaatgt ataaacgagt 151 ggatatattt ggtggtggat gatggtgtgt gtgtatatgc aaataattca 201 CTTTATAAAA GCTTATCGCT AATTTGACAG AACACTAGAA CAGTTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 +strand +11 : +17 GCTTATC AC RSP00340 Mean Expected Number 0.001 +strand -171 : -162 TCCACGTGaC AC RSP00640 Mean Expected Number 0.001 -strand -163 : -170 TCACGTGG AC RSP00682 Mean Expected Number 0.000 -strand -162 : -171 GtCACGTGGA AC RSP01030 Mean Expected Number 0.009 +strand -180 : -173 AGAAACTT AC RSP01734 Mean Expected Number 0.003 +strand -171 : -165 TCCACGT AC RSP01739 Mean Expected Number 0.001 +strand -135 : -123 TTATTGACTTtAT Totally 7 motifs of 7 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 1546. Group TF: WRKY11 /AC: RSP01739//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: signal peptidase subunit family protein |LOCUS: AT3G05230 |PROD: the same as GENE |1492155..1493625 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.29 C - 0.17 1 cttaagtcaa gtcaaatttt atgacaaaaa gactccaatt cgtaacaaga 51 aaaattatac ataaccaata tctcaagaga tttattctta aaccgaaata 101 ccggtttaca tagtaccggg tgggtgatta tacgtgtctt gaCCAATcac 151 attacagaga ctataactaa agagagaaat taatggatac ttgaaaagaa 201 AAAAAGAAAA AAAAACGCTC GTCTTCTTCT TCTTCTTCTT CTTATATTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.003 -strand -63 : -72 GACACGTAtA AC RSP00070 Mean Expected Number 0.001 +strand -70 : -63 TACGTGTC AC RSP00144 Mean Expected Number 0.007 -strand -75 : -80 CACCCA AC RSP01035 Mean Expected Number 0.005 +strand -69 : -63 ACGTGTC AC RSP01288 Mean Expected Number 0.003 +strand -71 : -64 ATACGTGT AC RSP01725 Mean Expected Number 0.000 -strand -62 : -73 AGACACGTAtAA AC RSP01757 Mean Expected Number 0.001 -strand -58 : -65 GTCAAGAC Totally 7 motifs of 7 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: mitochondrial substrate carrier family protein |LOCUS: AT3G05290 |PROD: the same as GENE |complement(1505897..1507706) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.32 C - 0.22 1 gtatgtaata tactttcttc ttgcaatgcc atatatatca actttcttct 51 tgtaatttta tcattttata cggtttaaac tttaaaccaa tgtctgtgta 101 ccaaatagag agagaagcat caaatctcag cataacggcg atgttaacgc 151 cgtcaatatt gacgtctttt taaactcccg aggcaaaatc atatgatcgc 201 TTTACGGATT TCACCTACCC AAATTGTCTT CCCAGAGGCG AGGACACACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00195 Mean Expected Number 0.001 +strand -108 : -98 TCtGTGTACCA AC RSP00286 Mean Expected Number 0.003 +strand +9 : +19 TtTCACCTACC AC RSP00530 Mean Expected Number 0.004 +strand -36 : -25 TCTTTTTaAACT AC RSP00864 Mean Expected Number 0.000 +strand -94 : -86 AGAGAGAGA AC RSP01079 Mean Expected Number 0.001 +strand +9 : +20 tTTCACCTACCC Totally 5 motifs of 5 different REs have been found Description of REs found 188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 997. Group TF: DcMYB1 /AC: RSP01079//OS: Daucus carota /GENE: DcPAL1/RE: box-L1 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RALFL22 |LOCUS: AT3G05490 |PROD: rapid alkalinization factor (RALF) family protein |1591283..1591989 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.27 C - 0.17 1 ttgtaatttg catgattaaa ataaagagca acgaatatgc gtataataag 51 tcaatttcat aatcaattaa caaaaaaata aacgcgtacc tattcttttg 101 ttggagaaaa tACAATggca gtttcgttaa tatatccata cacaagccca 151 ttataacaaa aacctcaggt tataagaagc tacacaccaa cgcttaacct 201 GTTGTCTTCA GCTGTGTACA GAATCAAGTT TCCAAGAGAG AAAGAGAGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.008 -strand -187 : -193 CATGCAA AC RSP00713 Mean Expected Number 0.005 -strand +14 : +8 CAGCTGA AC RSP00861 Mean Expected Number 0.004 +strand +39 : +47 AGAAAGAGA AC RSP01103 Mean Expected Number 0.009 +strand -41 : -34 AAACCTCA AC RSP01209 Mean Expected Number 0.002 +strand -106 : -97 CTTTTGTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G05520 |PROD: the same as GENE |1598556..1601306 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.28 C - 0.20 1 attaatttga atgggtttcg attgaaattg ggatatttgc tgcaaaaacg 51 atgcggttcg agtaagaatg gccacgtggc acaatctatc acatcaaaac 101 gacaccgtca gaattcatca tggtaaacga acggtcatga tttaatcgcg 151 atccaacaca ggaaagttta tgagtgtgca atgacgaatg tatccctaca 201 GAGTTCAGAA TATCGACGGC GACAATTTCT CTCTCCGGCT AACTTTTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand -178 : -168 TGAAATTGgGA AC RSP00063 Mean Expected Number 0.002 +strand -130 : -121 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.002 -strand -121 : -130 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -130 : -121 GCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -121 : -130 GCCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -129 : -120 CCACGTGGCa AC RSP00153 Mean Expected Number 0.003 -strand -122 : -131 CCACGTGGCC AC RSP00175 Mean Expected Number 0.002 +strand -128 : -121 CACGTGGC AC RSP00175 Mean Expected Number 0.002 -strand -123 : -130 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -130 : -121 GcCACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -121 : -130 GcCACGTGGC AC RSP00653 Mean Expected Number 0.001 +strand +27 : +37 TTCTCTCTCCg AC RSP00682 Mean Expected Number 0.002 +strand -130 : -121 GCCACGTGGc AC RSP00682 Mean Expected Number 0.002 -strand -121 : -130 GCCACGTGGc AC RSP00698 Mean Expected Number 0.004 +strand -63 : -53 TGAtTTAATCG AC RSP00718 Mean Expected Number 0.002 +strand -129 : -122 CCACGTGG AC RSP00718 Mean Expected Number 0.002 -strand -122 : -129 CCACGTGG AC RSP00763 Mean Expected Number 0.001 +strand -63 : -53 TGATTTAATCG AC RSP00837 Mean Expected Number 0.005 +strand +10 : +19 AtATCGACGG AC RSP00865 Mean Expected Number 0.000 -strand +36 : +28 GGAGAGAGA AC RSP00941 Mean Expected Number 0.008 -strand -174 : -181 TTTCAATC AC RSP01034 Mean Expected Number 0.008 +strand -127 : -121 ACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -124 : -130 ACGTGGC AC RSP01594 Mean Expected Number 0.008 +strand -181 : -174 GATTGAAA Totally 24 motifs of 16 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 724. Group RE: Box III /AC: RSP00763//OS: Brassica oleracea /GENE: SLG2/RE: Box III /TF: unknown ||Identical REs AC: RSP00768 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L22-2 (RPL22B) |LOCUS: AT3G05560 |PROD: the same as GENE |1614201..1615488 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +446 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.30 C - 0.17 1 ttgaacaact agcatttgtt ggtggaacac aaaagaataa atatcctcac 51 ttgtctaacg agttgtggga gttattacaa tttaaaaaca attgggatta 101 tttttggatt taacaaaagt ttggggatct tgtggttatt tatagaaata 151 taaattaggg caacaagacc actttaaatg ggcaaaaacc ctagccatct 201 GTTTCATTCT CCCCAAAGCA AAAAAGACGC CGCTCGTCTC TTCAGAGAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.002 +strand -70 : -59 TGTGGTTATtTA AC RSP00122 Mean Expected Number 0.005 -strand -130 : -136 CTCCCAC AC RSP00157 Mean Expected Number 0.008 +strand -63 : -52 ATTTATAgAAAT AC RSP00157 Mean Expected Number 0.008 -strand -52 : -63 ATTTcTATAAAT AC RSP01296 Mean Expected Number 0.005 -strand -56 : -64 CTATAAATA Totally 5 motifs of 4 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: epoxide hydrolase, putative |LOCUS: AT3G05600 |PROD: the same as GENE |complement(1623397..1624768) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.36 C - 0.17 1 aaaagcagcg ttataattgt cttttacata ttgtgtttga tatttatttt 51 tgtgctgggt ttcaatcaat tttccaccaa cttatcttac catttaaaac 101 tagtattcat gctatctaaa aagataggta aatagaagta atattaaaag 151 taacttccct ttggattctc tatttatatc acttccaaat tgattccatc 201 ACACATCTTA AAAAGTAAAA ACACATTCAT CTATCCAACA AAAAAAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 +strand +10 : +21 AAAAAGTAAAAA AC RSP01007 Mean Expected Number 0.004 -strand -72 : -78 ACCTATC AC RSP01639 Mean Expected Number 0.009 +strand -186 : -177 AATTGTCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G05675 |PROD: the same as GENE |complement(1658222..1660374) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +509 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.24 C - 0.19 1 aagcttacat ttataaccct gtaagtaaca aaacactaat ttaaggaatt 51 acagtgatta aaatcattaa actttgaaga ggccttaaag ccccaaaagg 101 aacatttgaa atcgacccca ctaagtgacc caacaagttg ttaggcgaat 151 gtgaattgga aaaaaacaca aaaagaagaa tgattgttct caagcccagc 201 AAATTTCTGA CACAGTTCAT CAACTAGGCG TTGAAAAGAT CTTGTACCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.009 -strand -89 : -96 ATTTCAAA AC RSP01214 Mean Expected Number 0.006 -strand -101 : -110 CCTTTTGGGG Totally 2 motifs of 2 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G05810 |PROD: the same as GENE |complement(1730982..1732390) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.25 C - 0.22 1 ccgcttcagc aggaaactga atagcattcc acaaaactga atcccataca 51 ggaattttga caaacacttt gcgagcgtat aaaaagttct tattttctca 101 aaatagtggg ttaatgggct aggcccattc ataaatctaa taATTGAgag 151 aagtattgat ttatttccca caggaacgac accgtatcgc atcctcattt 201 AAGAAAAACC CAAACGGCCA AATCCAGGTT TTGGCTCAGA CGACCAGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00953 Mean Expected Number 0.003 -strand -55 : -63 CAATTATTA AC RSP01127 Mean Expected Number 0.009 -strand -182 : -199 CAGT-- ** bp --AGCG Totally 2 motifs of 2 different REs have been found Description of REs found 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G05830 |PROD: the same as GENE |1736686..1738670 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.39 C - 0.15 1 atagaaaatg agatattaaa tttagattca tgccataatc agagagatct 51 gattttgaaa acttagaaga cctttctttt tgaagcttca agtcatagct 101 catgtaaagt cacgatcATT GTtttgatta ttattatata gatttgaatt 151 gtgaaagact cttcatttaa ttttctctgt attaatggtc aactaccatt 201 GTTCACATGC ACCCGCAAAA AAAAAAACTA ATTTTTTTTC TTTTTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 +strand +6 : +12 CATGCAC AC RSP00495 Mean Expected Number 0.009 +strand -98 : -91 TGTAAAGT AC RSP00892 Mean Expected Number 0.008 -strand -182 : -190 TTAATATCT AC RSP00987 Mean Expected Number 0.003 +strand -11 : -2 CAaCTACCAT AC RSP01740 Mean Expected Number 0.000 -strand -6 : -18 TAGTTGACCAtTA Totally 5 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 1547. Group TF: WRKY11 /AC: RSP01740//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS2 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: heavy-metal-associated domain-containing protein |LOCUS: AT3G05920 |PROD: the same as GENE |complement(1768796..1769592) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.36 C - 0.24 1 caagtaagtc cataagatgg tggctgaata ccaactaagc aaattcccaa 51 aacctcttat tcaattatac aaaaacatgc atctaagcac gtagatggtg 101 taatctcttg attatttaat taACAATact gaccaaacac aacctcaact 151 gcttcaacat tattccaatc tgtcatctct gtttgtcttc acatgttttt 201 AATAACTTCT TCTCTTCCTT CTTCATTCCT TTAATCCATT TTTCTCGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00187 Mean Expected Number 0.007 -strand -178 : -182 CCACC AC RSP00987 Mean Expected Number 0.001 -strand -175 : -184 CAGCcACCAT AC RSP01469 Mean Expected Number 0.007 +strand -12 : -3 TCACATGTtT Totally 3 motifs of 3 different REs have been found Description of REs found 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G06035 |PROD: the same as GENE |complement(1823105..1824188) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.21 1 aattgtttgc cttctctttg gaacttgttc ttgtcctcta tccttatatt 51 agaaacgatg ccgtatagga tgagagggac caagcgaatt agttaaaaat 101 gccttaaATT GTcggcacaa cgtcaaaatc gagctgacaa gaaaagcaga 151 acagaatcaa acaactcttt atgagtaaaa gcgaagtaac catttctctc 201 ACTCTCCTTT CTCAATTAAT ATAAGCCAAT CACCATCAAA ATATCATTTG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATPRXIIF/PRXIIF |LOCUS: AT3G06050 |PROD: |complement(1826160..1827867) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.31 C - 0.15 1 ttttacttgg tcaagaagtg aatgtttttc acaagatgaa atgtaaatga 51 tgtatttgaa agaagtaaaa acttcaaaac caaaatttga gtgtgtgctg 101 ttcttgaggc ttttaaacaa cgtgcagtct gatttgtttg ttacaaaacg 151 gcaacgatta agtctcttta gaaaggtctt tgagaagtgc cataaacgac 201 ACTATACAGT AATCGAAGGA ACCAAGAAAC GGTCTCAATC TTATTTTCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.007 +strand -141 : -130 AAgAAGTAAAAA AC RSP00716 Mean Expected Number 0.001 +strand -126 : -118 CAAAACCAA AC RSP00866 Mean Expected Number 0.001 -strand -76 : -83 GCACGTTG AC RSP00880 Mean Expected Number 0.003 +strand -55 : -46 aAACGGCAAC AC RSP01602 Mean Expected Number 0.003 +strand +33 : +40 TCTCAATC Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G06070 |PROD: the same as GENE |complement(1831063..1831929) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.10 T - 0.35 C - 0.32 1 tgatacaaca tcattgcaca aaaccttccc ttcatgatcc atttgtgtgt 51 agggacttac ttttgccaga ttagattaca tttcttcgat gtttactttg 101 gccccactct cccacatgca cttctctctc taccctcttc ccctctctct 151 taaaccccaa tctcttgcct atttatgcca ctctttgaac attccccctc 201 ACAACTCCAC TTGAGACCAT TTTTTAAAAA CTACTTCTTT CTAGAGACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00100 Mean Expected Number 0.009 -strand +49 : +44 TGTCTC AC RSP01686 Mean Expected Number 0.009 -strand -152 : -157 CACACA Totally 2 motifs of 2 different REs have been found Description of REs found 98. Group RE: AuxRE /Group TF: ARF /AC: RSP00100//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AuxRE /TF: ARF ||Identical REs AC: RSP00261 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G06100 |PROD: the same as GENE |complement(1841177..1842981) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.39 C - 0.20 1 aagaaaagtg ttgagcaccc tcttctcctt tcagactgct taaccaaagg 51 aatatagcag cactctacta attcttcttt ttgttgaaat aaaataatta 101 ctctttaatt tccatcttct ttgcgttttt ctctctatct ctcttttttt 151 gttccattag atcattcata aagcggatca agccaccttg attgtgactt 201 TCCTCAGTTC TTGATCACTA TATCTTGAAG GAATTAAGAA GATGAATGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 -strand -52 : -61 AAAAAAGAGA AC RSP00654 Mean Expected Number 0.006 +strand -185 : -176 CACCCtCTTC AC RSP00709 Mean Expected Number 0.006 -strand -101 : -109 TAATTATTT AC RSP00755 Mean Expected Number 0.010 +strand -153 : -147 AGGAATA Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 717. Group RE: submotif A /AC: RSP00755//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif A /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein |LOCUS: AT3G06240 |PROD: the same as GENE |1887049..1888756 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +293 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.36 C - 0.16 1 ctctttgaga aatatctgta tagtatttcc tatgtgttct aactaactta 51 aactcatacc cgttcaggtt atgttccttc cgcattaaca catgatgatg 101 ataATTGAtg tttgtgatca cctttgggaa ccattaggat caagattcat 151 caaaagttgg aaaagtaaaa taatcctaac cagataaatt ttggattgaa 201 TTTTTCAAAT CAAATCAGAA TACATTGATT CTGTATATCT TATTGAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.007 -strand -126 : -135 AACaTAACCT AC RSP00534 Mean Expected Number 0.002 +strand -109 : -97 ATgATGATGATAA AC RSP00750 Mean Expected Number 0.007 +strand +40 : +51 TTATTGaAAAAT AC RSP01023 Mean Expected Number 0.002 +strand -87 : -80 GTGATCAC AC RSP01023 Mean Expected Number 0.002 -strand -80 : -87 GTGATCAC AC RSP01202 Mean Expected Number 0.002 -strand -74 : -81 CCAAAGGT AC RSP01250 Mean Expected Number 0.003 -strand +4 : -6 AAAATTCAAT Totally 7 motifs of 6 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 948. Group RE: PI /AC: RSP01023//OS: Arabidopsis thaliana /GENE: GapB/RE: PI /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G06310 |PROD: the same as GENE |complement(1912978..1914387) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +207 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.27 C - 0.20 1 attagcgtac ctgaaaattc gaattcgacg gagtccgaaa attgatttcg 51 ccgacgaaga tgacgggtga taaaccctac aatgagaaat cgggttttga 101 atcaaaccaa atgggctatt aagttgagcC CAATatcagc ccagcaaagc 151 gacatcatca aaacgcagcg tttaattgtc gagagccaat ttgcttttgt 201 TGTTGTTCTT CATCATCGCT TTTAGTTCTC TCAGTGGAGA AGAAGACTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.008 +strand -58 : -49 AGCAAAGCgA AC RSP00734 Mean Expected Number 0.004 +strand -42 : -35 CAAAACGC Totally 2 motifs of 2 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ribosomal protein L33 family protein |LOCUS: AT3G06320 |PROD: the same as GENE |1914517..1915324 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +429 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.31 C - 0.23 1 tcaccttttc tgcagatgac tcgagtcttc ttctccactg agagaactaa 51 aagcgatgat gaagaacaac aacaaaagca aattggctct cgacaattaa 101 acgctgcgtt ttgatgatgt cgctttgctg ggctgatATT GGgctcaact 151 taatagccca tttggtttga ttcaaaaccc gatttctcat tgtagggttt 201 ATCACCCGTC ATCTTCGTCG GCGAAATCAA TTTTCGGACT CCGTCGAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.008 -strand -72 : -81 AGCAAAGCgA AC RSP00734 Mean Expected Number 0.004 -strand -88 : -95 CAAAACGC Totally 2 motifs of 2 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AGP27 |LOCUS: AT3G06360 |PROD: arabinogalactan-protein (AGP27) |1928908..1929452 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.33 C - 0.17 1 aaaagtgaaa actcgatcta cgcccatctt caagaattca gcaaatatat 51 tttcttttcc accgaacaca tcctttaaat tgataaataa taatcttttt 101 ggaaaaaggt gagacaaatt ccatttaaaa TCAATttata atattttact 151 attagagcta aaagttttct tttatagaga cagtatcatt attacaacac 201 AAAATGCGCT CTCATCAGTT AAGGAAAAAA ACAACTCAGC TTTGATTTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.005 -strand -88 : -93 CTCACC AC RSP00933 Mean Expected Number 0.006 +strand -66 : -54 TTTATAATaTTTT AC RSP01601 Mean Expected Number 0.009 -strand -191 : -198 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SFR2 |LOCUS: AT3G06510 |PROD: glycosyl hydrolase family 1 protein |2016443..2019680 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +13 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.21 T - 0.30 C - 0.22 1 catagagaga cgtacacgga ctttggagct gagccatcca cacacgggac 51 acgataaggt tgcgagcaaa gtgatcacca ccaaccactt cttatcacgc 101 cgttTCAATg ggcctttaat gggctctttt tttcataaac ccgttttgtt 151 ttatcttttc tcagtgtcgg taaaaactag aaagatccgg tgattatttc 201 ATCATCGGCG ATTATGGAAT TATTCGCATT GTTAATTAAG GTCGCCGGAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.006 +strand -119 : -110 CAaCCACTTC AC RSP01023 Mean Expected Number 0.003 +strand -130 : -123 GTGATCAC AC RSP01023 Mean Expected Number 0.003 -strand -123 : -130 GTGATCAC AC RSP01085 Mean Expected Number 0.001 -strand -30 : -38 ACCGACACT AC RSP01550 Mean Expected Number 0.000 -strand -181 : -192 TcCGTGTACGTC Totally 5 motifs of 4 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 948. Group RE: PI /AC: RSP01023//OS: Arabidopsis thaliana /GENE: GapB/RE: PI /TF: unknown 1003. Group RE: DRE2 /Group TF: HaDREB2 /AC: RSP01085//OS: Helianthus annuus /GENE: sHSP/RE: DRE2 /TF: HaDREB2 1389. Group RE: ABRE3a/3b /AC: RSP01550//OS: Sorghum bicolor; Sorghum vulgare /GENE: Sbdhn2/RE: ABRE3a/3b /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-binding enhancer protein-related |LOCUS: AT3G06610 |PROD: the same as GENE |2060750..2062073 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.19 T - 0.33 C - 0.22 1 aattttattt gtagtacgct tcttacatgg gcttaagggc cgataactat 51 ttttattcaa ggcccaatat agatcgttct cgctcatcgc aaaattaacc 101 tactaaaccg gaattcggtt cggttgtggt ATTGTttagc cggtttggtt 151 ccagcctcac ccgatagaat tagcctttag ggtttctaac gtcgaagctt 201 GAAACACTAT CGAACCTCAA AATCTCTGTT GCCGGAAATT TTCTTCACCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.002 +strand -155 : -144 AcTATTTTTATT AC RSP00140 Mean Expected Number 0.001 +strand -156 : -144 AAcTATTTTTATT AC RSP00279 Mean Expected Number 0.002 +strand -24 : -16 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -16 : -24 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 -strand -15 : -24 gAAACCCTAA AC RSP01577 Mean Expected Number 0.001 -strand -61 : -70 GCTAAACAAT Totally 6 motifs of 6 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: zinc finger (GATA type) family protein |LOCUS: AT3G06740 |PROD: the same as GENE |2126425..2127473 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +239 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.34 C - 0.16 1 acgacgccat tcgaaatggc gcccaaatta tgcgaaaatt ttcctacagg 51 gttatgtgcg atatttggcg ggtggctcta gcctgatatt agaggacgta 101 aacaggggta atttcgtctt ttaaaGCAAT aaattaaagc tagggtttag 151 ccgaaccaat ttcatttata attggccatt tggtttagtt tttgtgaggt 201 ATCTGTTGGG TCGTTTCTTT GAAATCAAAA AAAAAAAATC TCTGTTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.008 +strand +34 : +41 AAAAATCT AC RSP00877 Mean Expected Number 0.001 -strand -129 : -137 CCCGCCAAA AC RSP01600 Mean Expected Number 0.007 -strand +24 : +17 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G06840 |PROD: the same as GENE |2156868..2157856 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.29 C - 0.20 1 taaaattgta atgactaaaa aaggaattga aaaggagatg aattatcatg 51 tatgggccat ttataaaagt aaaaaaaaaa aaaaaactta gaaaaatacg 101 ggttgtttga aaatgacaga atagacgact ctcgttgcAT TGAatttgag 151 tgaaccccac actctctttc aagtctcaac ggccatctcc attctcttct 201 ATCTCTTCTT CACAAAACTC TTTCACCCAT TTTTCCTCCA TTAAACAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.007 -strand -177 : -186 CCTTTTTTAG AC RSP01205 Mean Expected Number 0.007 -strand -177 : -186 CCTTTTTTAG Totally 2 motifs of 2 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G06890 |PROD: the same as GENE |2176862..2177592 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.31 C - 0.19 1 cctcccattt ttcaccatgc tcacaataag cttgtttttt tttcatttaa 51 ttgtttttat ttatttataa agttattgta aatgacgtcg aaatttcgaa 101 gaaaattaaa aaaaaacaaa aacgcatggg aaatgcttta cactttttca 151 aaagacaaac gcgtccctcg ttaccctata ttttttaaaa aaagcaacaa 201 ACAAAAACCA ATTCGACAAA TCTCCATTCC AACTGTAACC AAAAAAAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand +42 : +51 AAAAAAGAGA AC RSP01209 Mean Expected Number 0.001 -strand +48 : +39 CTTTTTTTGG AC RSP01275 Mean Expected Number 0.001 -strand -110 : -119 TCgACGTCAT AC RSP01621 Mean Expected Number 0.009 +strand -62 : -53 TACACTTTTt Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pectate lyase family protein |LOCUS: AT3G07010 |PROD: the same as GENE |complement(2212734..2216489) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.39 C - 0.16 1 tcacaactat atatctatat aattgctata aattcaggga atatatgata 51 aagcacatag tgatatttct tcatcgtcca gattagcaat cacaacctag 101 attcatgacc ctgcggaata aacaaATTGT atatatttta tatactttaa 151 atagttttct tattctttat atattttatt ttctatgaaa ttaggccaat 201 AAGATAATGG GAATGGTCAC ACAATCTTCT TCTTATATTA ACTTCTCTCT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATGSL10 |LOCUS: AT3G07160 |PROD: glycosyl transferase family 48 protein |complement(2264963..2279389) |SUPPORT | 50 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.22 T - 0.41 C - 0.16 1 ttcgttgatt acaactagtc ctaggttaaa gaacaacgtt tacaacttat 51 tttgcttttt tcagttgtgc ctaggtcact tgtccgaatc tgtataattc 101 acgtgtatct tcctggattt gattacattt catttactta gtgttgggtt 151 ttacgttagt ttaagctgct gagtactttg atgttttttg tttgtagaaa 201 ATGTCTCGAG CTGAGTCATC TTGGGAGAGG CTGGTGAATG CTGCTTTACG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -126 : -117 GtCACTTGTC AC RSP00871 Mean Expected Number 0.009 +strand +10 : +19 GcTGAGTCAT AC RSP00974 Mean Expected Number 0.002 -strand -94 : -103 TACACGTGaA AC RSP01642 Mean Expected Number 0.003 +strand -2 : +8 AAATGTCTCg Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07310 |PROD: the same as GENE |complement(2327824..2329787) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.28 C - 0.25 1 tagccaatga catatatgca cttgtcaagt tggagttaaa caataaccac 51 acaccgaatt gaggagccca ttggaaaaaa cagaagcaaa tatattttta 101 tgtaaaaata gaaacggaat aatatagtaa caaaaagata ctctcttcaa 151 ccttatccat tcttcgccac ttctcccact aatccgctaa atcattcttc 201 TTCATCTCTC TCTCATTCAC AATTCCCGAA ATTCTCTCAA ATCACAGATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 +strand -35 : -26 GCCACTTcTC AC RSP00572 Mean Expected Number 0.007 -strand -186 : -193 ATATGTCA AC RSP00631 Mean Expected Number 0.002 -strand -150 : -162 TGTGGTTATTGTT AC RSP00864 Mean Expected Number 0.002 -strand +13 : +5 AGAGAGAGA AC RSP00891 Mean Expected Number 0.006 -strand -103 : -111 AAAATATAT Totally 5 motifs of 5 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycosyl hydrolase family 17 protein |LOCUS: AT3G07320 |PROD: the same as GENE |complement(2332077..2334057) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.31 C - 0.20 1 ctagaaacag agtttttcaa ttaatataac cattcagact aaccaaaaaa 51 aaaaaaaaga gaagacgtcg tagtaatcgt acacttaaaa aattgaatat 101 aactagtaaa tacaaaagtt agtaatacAT TGTatctttt gttgatttaa 151 tactcaaaaa caggcttttg tacaggaaca cgtaacacta gccattaaat 201 ATCTCCACTC TTCTTTCTTC TTACCAAATT ACTCAATCCA TCTCCCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand -148 : -139 AAAAAAGAGA AC RSP01261 Mean Expected Number 0.007 -strand -16 : -23 TTACGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07350 |PROD: the same as GENE |2347474..2348797 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.35 C - 0.18 1 aaagaatgaa agcgtagaaa ctgtaaaatg cgaataaaaa cccgttgcct 51 gttgggatat atatgccttt gtttgcctaa cccatcgggc caaaagtcgt 101 catgatcatt agtaaccaag aagtggtata tcctccggtt ctacttttcc 151 ccattattac gtgtcttttt ataatatgta cttacattcg agatttattt 201 AATTATTTTA TTCATATTAA CAATATAAAT AACTTAAGCT TCTCTTCGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.002 +strand -43 : -36 TACGTGTC AC RSP00160 Mean Expected Number 0.001 -strand -170 : -181 GcATTTTACAGT AC RSP00535 Mean Expected Number 0.002 +strand -154 : -138 GCCT-- +7 bp --TATATA AC RSP01035 Mean Expected Number 0.007 +strand -42 : -36 ACGTGTC AC RSP01261 Mean Expected Number 0.005 +strand -44 : -37 TTACGTGT AC RSP01725 Mean Expected Number 0.001 -strand -35 : -46 AGACACGTAAtA Totally 6 motifs of 6 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07460 |PROD: the same as GENE |complement(2384424..2385719) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.35 C - 0.22 1 ttttccaata actcgttaaa tgttagaaca tggcttatag taacgaaacc 51 atttaaataa atacaaattt attggtggat ataatcagac gtggctttca 101 ttcATTGGtt actctcacca tggcctgaga aacagaggat cactgctctc 151 attccaaatt ccgccttcaa taattttgtt ccactctgtt tcaagctgtc 201 ATAAAAATGT CGTCTTCTTC TTCTTCCTCG CTTAAACCCA TTAATTCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.006 -strand -120 : -126 TATCCAC AC RSP00157 Mean Expected Number 0.008 +strand -150 : -139 ATTTAaATAAAT AC RSP00157 Mean Expected Number 0.008 -strand -139 : -150 ATTTATtTAAAT AC RSP00248 Mean Expected Number 0.001 -strand -106 : -115 GCCACGTCtG AC RSP00304 Mean Expected Number 0.006 -strand +1 : -7 TGACAGCT AC RSP00698 Mean Expected Number 0.006 -strand +48 : +38 TGAATTAATgG AC RSP00773 Mean Expected Number 0.004 -strand +48 : +39 TGAATTAATG AC RSP00778 Mean Expected Number 0.006 -strand +48 : +39 TGAATTAATG AC RSP00819 Mean Expected Number 0.001 -strand -106 : -115 GCCACGTCTg AC RSP01034 Mean Expected Number 0.003 +strand -112 : -106 ACGTGGC AC RSP01138 Mean Expected Number 0.000 +strand -113 : -102 GACGTGGCTTTC AC RSP01160 Mean Expected Number 0.000 +strand -117 : -106 ATCAGACGTGGC Totally 12 motifs of 11 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1056. Group RE: Region C /AC: RSP01138//OS: Zea mays /GENE: Adh1/RE: Region C /TF: unknown 1073. Group RE: G-box /Group TF: CG-1 /AC: RSP01160//OS: Nicotiana plumbaginifolia /GENE: CAB/RE: G-box /TF: CG-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07568 |PROD: the same as GENE |complement(2416249..2417796) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.21 T - 0.26 C - 0.16 1 caactacgga ccttcacggt cttttgggcc acgatagaca tttttactag 51 ttaaatgctt ggacttctat ataagaaagg cccatctcaa ttaaaaaact 101 taaatgcttt agtttgtttt agcaaactaa tgggCCAATa taaaggccca 151 tatcaaaaag aaaaaatggt tgacgactcg gtaatgcgtc agagagattc 201 AGAGACATTG CAGAAATTGG AAGAAGAAGA AGAAAGAGAT GTTGAGAACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.006 +strand +31 : +39 AGAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: small nuclear ribonucleoprotein D1 |LOCUS: AT3G07590 |PROD: the same as GENE |2423091..2424170 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.20 G - 0.21 T - 0.37 C - 0.22 1 ttcaatttcc ggtttgctga accaactgta tgtagatttc tggttgaaac 51 atctactggt ccaccattgg actttatggg ccttactaca tttttgggcC 101 CAATattgta atttagctga tggatccaaa accggaatcg gatctgtacc 151 cgctccatcg tgaggtctct cacagcgaaa gaagggtttt gagggttttc 201 ACACCTTTCG CTGTTTCCTC GTCAATTTCT TTGTTTGGTT GTTCTTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.005 +strand -114 : -104 TACAtTTTTGG AC RSP00295 Mean Expected Number 0.000 +strand -124 : -99 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -99 : -124 TGGGCC-- ** bp --GGCCCA AC RSP00459 Mean Expected Number 0.004 -strand +25 : +16 TTGACgAGGA Totally 4 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: prephenate dehydratase family protein |LOCUS: AT3G07630 |PROD: the same as GENE |2435451..2437971 |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.29 C - 0.21 1 atcgttgata atgttctaga attagggctt ttattgggcc cagtgcaaat 51 aaagtggata atgcataaat aatacttttt aaacacaaat tatgggcctt 101 aggATTGGtc cattagaaaa accttatgat agataaataa tgtggcccat 151 caatgtcacc tccatctcca tatacatatc tctcatcata aacagccgtc 201 AAAACAACAT CAATGGCAAT GCACACTGTT CGATTGTCGC CGGCGACTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01063 Mean Expected Number 0.001 +strand -75 : -64 ATGATAGATAAa AC RSP01209 Mean Expected Number 0.004 +strand -173 : -164 CTTTTATTGG AC RSP01711 Mean Expected Number 0.007 +strand -185 : -176 CTAGAATTAG Totally 3 motifs of 3 different REs have been found Description of REs found 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07640 |PROD: the same as GENE |2438144..2439847 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.27 C - 0.14 1 tctttgagtt aataaacgag atataatctg ttttcctgtt cacaaaaaaa 51 aaaaaaataa aaaaatcata tatcatccaa ttttcttttg gttcagattt 101 taaaacATTG Ggaaaaatag ggactagatg acaaataaca agaaatcaga 151 attttggaag gattaaacaa taatcgcttc ttgtgcaata agccaaaaac 201 AGGATTAAAC AGATTCGCTC AGTTCTCAAA ACGATGAAAG TAGCGGAGAA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SET domain-containing protein |LOCUS: AT3G07670 |PROD: the same as GENE |2451614..2454866 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.11 T - 0.36 C - 0.23 1 ctaatcacta ggctttttcc cattagcatt agcgcataac aaagttttga 51 atattaatat cattatccat aggcagctta gatttttttt ccttagcatc 101 aaattaaact caaaaccgaa ccaaaccgta aatccacaaa ctaattttgg 151 ttcgaattta aaaacattat cttttaattt tgtcatgccc cctctgctaa 201 GTGCAACCAT TCGTCTTCTC GCTTCATCGT TTTCTCTTTT CCGATGGCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.004 +strand -163 : -154 AACAAAGTtT AC RSP00888 Mean Expected Number 0.005 -strand -114 : -122 AAAAATCTA AC RSP01032 Mean Expected Number 0.006 -strand -51 : -60 CCAAAATTAG Totally 3 motifs of 3 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07760 |PROD: the same as GENE |2476450..2478219 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +279 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.23 T - 0.22 C - 0.22 1 taaaaaaaaa aagagaaaaa gatttaatag caaaaatggt cgtggtacgg 51 agagacggtg gcgcgtggag gcgggagagg agcgtggagg aaaagaaaaa 101 gagccaaaag agaggaaaaa agcaaacact ttcacttggt ggacccattt 151 gtccctcccc cagactctct cttctcatct ctctctctct ctctctcttc 201 AAACCCTAAA AATTCACGCA TTTTGGCACA GTTAAGTTCG CTGAATCCCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +9 : +1 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +1 : +9 AAACCCTAA AC RSP00445 Mean Expected Number 0.002 +strand -194 : -185 AAAAAAGAGA AC RSP00863 Mean Expected Number 0.003 +strand -92 : -84 AGAGAGGAA AC RSP00864 Mean Expected Number 0.000 -strand -3 : -11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -5 : -13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -7 : -15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -9 : -17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -11 : -19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -13 : -21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -15 : -23 AGAGAGAGA AC RSP00985 Mean Expected Number 0.005 +strand +30 : +39 AGTTAaGTTC AC RSP00989 Mean Expected Number 0.001 -strand -123 : -131 TCTCCCGCC AC RSP01114 Mean Expected Number 0.010 -strand +26 : +20 CCAAAAT AC RSP01174 Mean Expected Number 0.002 -strand -121 : -131 CCTCTCCCGcC AC RSP01283 Mean Expected Number 0.000 -strand -4 : -20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -6 : -22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -8 : -24 GAGAGAGAGAGAGAGAt AC RSP01303 Mean Expected Number 0.004 +strand -1 : +9 cAAACCCTAA AC RSP01601 Mean Expected Number 0.002 +strand -71 : -64 TTTCACTT Totally 20 motifs of 12 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 910. Group TF: E2F/DP /AC: RSP00989//OS: Zea mays /GENE: RBR3/RE: E2F/DP IV /TF: E2F/DP 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: polygalacturonase 3 (PGA3) / pectinase |LOCUS: AT3G07820 |PROD: the same as GENE |complement(2496446..2498101) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.31 C - 0.17 1 tctttgaatg aaaatgtccc ttttagatac tttttagttt tcatccttag 51 ttcaagatac aaaattagac atcagacttc ctgatgggtc aaacgaccta 101 aaaaatgaga ggtggtgaga aattttcaaa aaatagactt caacatctct 151 cctccatcca acgcactata taaaggtaaa cctgagctta atcaaattcc 201 AGAAAACAAA AAATAGAATA ACAAATAGTA ATATTAGTAG TAATTTTTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00263 Mean Expected Number 0.000 +strand -46 : -38 CATCCAACG AC RSP00615 Mean Expected Number 0.009 -strand -82 : -87 CTCACC Totally 2 motifs of 2 different REs have been found Description of REs found 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Rho GDP-dissociation inhibitor family protein |LOCUS: AT3G07880 |PROD: the same as GENE |2513977..2515828 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +204 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.32 C - 0.16 1 cggataaaac cgggatatat cattaatgca agtaataatg attgaagacg 51 agattagagg actaattccg taattacaaa caaatgattt tattgacaat 101 tcagtgatta ttaaaaataa aaaacataac aacattagtg gtcATTGTcg 151 ttgtcgtggc tcgaggctat cgtctctcct atgcgcgtgg aagaaatagc 201 AATTATGCTT TCTTTTGTAT TTGATTATTA TCCGTTAGTG ACCCTCACGA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G07910 |PROD: the same as GENE |complement(2523163..2524171) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.25 T - 0.27 C - 0.15 1 tgtctatttt gctaaactta taacaaaaaa taatagtgcc ggcttagttg 51 ggttaagatc cggtggagtc gggtgggtaa attagtaaat tgggtaaagc 101 tgtaagtaaa CCAATgacgt ctttccagaa atttggttcg aatcggttag 151 gccggttaag gaacaggtcg gtgttgtggc tcgaccttgt agcgaaaggc 201 AAAATCAATC CATTGCGTAA GCAAAAACTT CAAAGTTAAA AACCTTAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01654 Mean Expected Number 0.009 +strand -88 : -79 AATGACGTCT Totally 1 motifs of 1 different REs have been found Description of REs found 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: HhH-GPD base excision DNA repair family protein |LOCUS: AT3G07930 |PROD: the same as GENE |2526624..2528639 |SUPPORT | 2 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.27 C - 0.16 1 ttaacgagga aaacacaagc gagagaagct atgaagactg cgtttcccaa 51 ccctaatttt ttttctttct caaaagcttt ttataattaa aaaaaaaaaa 101 accataattt tttagatttt tgccACAATt taattcgtaa aacaaaaacg 151 taattgacac aaaaagagtc taaatttaca cactgacggc aaaaagggat 201 ATAATTTATC GACAAACTCA CAAAAGTATC GGCGAAGAAG AGATTGGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.010 -strand -80 : -87 AAAAATCT AC RSP00860 Mean Expected Number 0.001 -strand -131 : -139 AGAAAGAAA AC RSP00888 Mean Expected Number 0.003 -strand -80 : -88 AAAAATCTA AC RSP00969 Mean Expected Number 0.002 +strand -18 : -9 CTGACGgCAA AC RSP01527 Mean Expected Number 0.002 +strand +9 : +20 TCgACAAACTCA Totally 5 motifs of 5 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: rhomboid protein-related |LOCUS: AT3G07950 |PROD: the same as GENE |2531858..2534510 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.38 C - 0.10 1 atcagagccc aaaaacccat atgggggtat aatcgtctcg taaataacac 51 ataattaatt gtttttaata cgtaagtgtt tttttggggt caaaatacat 101 aagaatttat gataattaag tggataataa ctttttcgtt aaaaataatt 151 accgtgttat tttttgtttg ttgttgttgt tacttgttac attaaactat 201 AATTTATATA TGAGTATCGA ATTCCAATTG CGGAAGAAAG GAGAAAATAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.006 -strand -51 : -63 AATTATTTTTAAc AC RSP00858 Mean Expected Number 0.006 -strand -48 : -55 GGTAATTA Totally 2 motifs of 2 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G08010 |PROD: the same as GENE |2555988..2557511 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.37 C - 0.17 1 tatcgctgaa actcgtctca ctaatagctc aataccattt ttcatcatga 51 tcacaaaaac ttgtttcttc aaatttaagc tttgttttgg gtttgaagtt 101 ttttttattt atataagtga ccaccaaaaa ataaggagcc aaacaaaaaa 151 aaaacttatt ttattattga aatatctttg tggatgagga aggagtaacc 201 GAAAAGGATA AATCATTTCT TCTTCTTCTT CCTCTGCTTT CTTCCTAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.007 -strand +7 : +1 CCTTTTC Totally 1 motifs of 1 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G08030 |PROD: the same as GENE |2564039..2566008 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.27 C - 0.21 1 taccatacaa aatttactaa ttactgtaca aaaattacca aataaaaggc 51 cacaaatatc ttaggaagaa atgaagcaag gcacaagtgc caatacgaga 101 ttagagagca tgaattaagg agaaaagtcg gtttcggttc agtaagacag 151 acagacaaaa tccatcgttg gggtccagtc acattacctc tttctacgtg 201 ATTTCCTCTC TCTCCACTCG CTTTTAATCC TTTCACTTGT ATAAAGTCGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.001 -strand +11 : +3 AGAGAGGAA AC RSP00865 Mean Expected Number 0.000 -strand +15 : +7 GGAGAGAGA AC RSP01601 Mean Expected Number 0.005 +strand +31 : +38 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATPLC2 |LOCUS: AT3G08510 |PROD: phosphoinositide-specific phospholipase C (PLC2) |complement(2582373..2585857) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +295 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.29 C - 0.20 1 ttactaacct tggctctcat gctgatttcg cagaagctgt ctccttcgtt 51 cctctgatta tttgtttagc tttacaggat gaggagcggc ggagatgaat 101 agaaagattt tgtagcttac gctcttattc ctcctttaaa caacaacaaa 151 accctagtaa ctaacttaat gggctttatt atttcaaaag cccaataaaa 201 CCCAAATGGA TAAGAATTTG CCAGAGGGGA TATTCGCACA GAGAGAGAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00296 Mean Expected Number 0.000 +strand -31 : -7 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -7 : -31 TGGGCT-- ** bp --AGCCCA AC RSP00864 Mean Expected Number 0.001 +strand +40 : +48 AGAGAGAGA AC RSP01013 Mean Expected Number 0.006 +strand +3 : +12 CAAATGGAtA AC RSP01637 Mean Expected Number 0.002 -strand -124 : -134 CTGTAAAGCTA Totally 5 motifs of 4 different REs have been found Description of REs found 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G08610 |PROD: the same as GENE |complement(2615432..2616809) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.28 C - 0.19 1 accaagtagg ttatctagtt attaccaccg tccgtgacca tgtatccatc 51 caatccatga aaaagtcaaa aacatttcat ttggatgtat tgggctttga 101 gatttacgtt tcattaaaaa tgaagcccaa aagcccatta ttatCCAATt 151 gactagagtg gtctctgatc ccaaatcttt aacttggatc ttaacacaga 201 GAAGAAGCAC AATCGGAAGA AAGGAGAAGA CGAAGATGTC GTTGGTATGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -141 : -130 AAAAAGTcAAAA AC RSP01015 Mean Expected Number 0.005 -strand -118 : -127 CAAATGAAAt AC RSP01086 Mean Expected Number 0.005 +strand -98 : -89 TTTACGTTTC Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATPK1 |LOCUS: AT3G08730 |PROD: serine/threonine protein kinase (PK1) (PK6) |complement(2651453..2654189) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +820 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.24 C - 0.23 1 cattgtggat ttcaaatcca cataatccgg aaaaaaaaga tatgatctaa 51 aaaacaacaa aaagtcagga agaatgggct tggtgaaagg cggcccacta 101 aaataaataa agaattagtg gacaaaaaaa cctccgccgc atatttaaca 151 actggtcaac gttctcccaa taagatacgg ccacgtgtat gaacccctgg 201 ATCTGCGATG CTGCTCTTAA ATTCTCCTCT CGTCCTCATT TCCATCTTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -13 : -21 ACACGTGGC AC RSP00153 Mean Expected Number 0.002 -strand -13 : -22 aCACGTGGCC AC RSP00175 Mean Expected Number 0.001 -strand -14 : -21 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -12 : -21 tACACGTGGC AC RSP00211 Mean Expected Number 0.008 -strand -83 : -93 CTAATTcTTTA AC RSP00524 Mean Expected Number 0.008 -strand -13 : -19 ACACGTG AC RSP00550 Mean Expected Number 0.006 -strand -172 : -182 cGGATTATGTG AC RSP00682 Mean Expected Number 0.002 +strand -21 : -12 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -12 : -21 TACACGTGGC AC RSP01034 Mean Expected Number 0.008 -strand -15 : -21 ACGTGGC AC RSP01104 Mean Expected Number 0.007 +strand -73 : -66 AAACCTCC AC RSP01255 Mean Expected Number 0.002 -strand -13 : -20 ACACGTGG AC RSP01599 Mean Expected Number 0.008 +strand -191 : -184 TTTCAAAT Totally 13 motifs of 13 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: elongation factor P (EF-P) family protein |LOCUS: AT3G08740 |PROD: the same as GENE |complement(2654647..2656242) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.30 C - 0.18 1 tgatttgttc atgtgcatac atataaaaaa taaaatgtaa ctatttgagg 51 aaaaaaacat ctaatggcat ttgattggaa ttggtactct aaaaaatcag 101 ataaaagcgt atgtaaaccg gataattgaA TTGAaccgaa ttacggttcg 151 gttttgttgt tggtgtgata aaggttcgat tgagccgtaa aaccttccgt 201 CCTCCTCGAG TCCTTTCCAT CAGGACCTTA TCCACAGTCC ACACACAGCG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: rhodanese-like domain-containing protein |LOCUS: AT3G08920 |PROD: the same as GENE |2712242..2713272 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.33 C - 0.13 1 ggtgtcgttt caaagagagg aaatttacac ttagtagccc tatatattta 51 ttatttaaca tttgacccca ctagtatatg tttgttactt tactttaagc 101 gagggtgata gtcaaattat gaaatatctg agggcctaaa atggaaataa 151 gtaagaagtt ttggggtgtt cttaaaatga aaaatctgaa gaacaatatc 201 ATTGGTTAAA TTCCTCTGAA AATCCAAAAG AATTAAAGAT GACAGTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.009 -strand -134 : -140 GGTCAAA AC RSP00863 Mean Expected Number 0.002 +strand -187 : -179 AGAGAGGAA AC RSP01600 Mean Expected Number 0.010 +strand -193 : -186 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase family protein |LOCUS: AT3G09010 |PROD: the same as GENE |2749958..2752281 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +332 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.33 C - 0.16 1 aagaagaaat ctaatcagtg cgacttttat aatagtctcg tcgtgtgaaa 51 aaagtaaaat aaaatatagt aataaaagtc tcgtcgtcgt gtagctgtca 101 ctttcgtttg tcactttcga gcatcagcag ccgaacataa acaacaaaat 151 aaaattgaat accttttagc gtattcactg ttcatgagtt ctgggtttgg 201 TTTGCTTTGT ATGCTCAACA ATTTATTGAC ATCTTCACGA AAAAGTTTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -152 : -141 AAAAAGTAAAAt AC RSP00304 Mean Expected Number 0.005 -strand -101 : -108 TGACAGCT Totally 2 motifs of 2 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G09180 |PROD: the same as GENE |2819123..2821430 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.16 T - 0.21 C - 0.17 1 aaaaaaaaaa tattaaagtg aacaaactgt acatatgggc taaaaactaa 51 aagtcccaca aacattgaga ttacaaaata cattttcagt ccaacatgag 101 ccataaagca ttgcttaatg gagtaaaacT CAATttaaca gagtggaata 151 aattaaacaa aataagacgt gaaggagcag aagcaagcat atcaacaaaa 201 ACGCCTTTGA AACGCAAACG CTACAAAATT GCGTCTGGCG TTACAGTAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.006 -strand +12 : +5 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G09210 |PROD: the same as GENE |complement(2825290..2826886) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.31 C - 0.17 1 atatttattc aaaattttaa aatacaaagt tagtgcccca tatctttgta 51 aagtactcca attttgtgat ttgcagttta attactactt caatccggta 101 attttaatct gatttagttt cataccggca tttgggataa accgggttcc 151 cggttaaaca aattccaaaa cattatccaa aacaaacaga gaattttatc 201 AACGGAATTT TCCCAAAAGA AAAACAGAGA ATGATGAAGC TGCAAGGGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.009 +strand -154 : -147 TGTAAAGT AC RSP01105 Mean Expected Number 0.008 -strand +50 : +45 CCCCCT Totally 2 motifs of 2 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G09250 |PROD: the same as GENE |2839007..2840871 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.32 C - 0.17 1 acaaaaaaag tctagtttgt aatgggacgc tcgtttttag gtgacttata 51 taaaaataaa taaatagatt aaaaaacaaa taaaatcagt ataggcctaa 101 ataaaagtta gcttacggac catttatgat gaaacttggg ccctaatgca 151 aagcccatta attttatctt tggagtctga agtctctcct ctctgtgctt 201 TCACATAATC ACATTGCATG ATTGATCAAA TACTCGATTT TCCGTGAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00250 Mean Expected Number 0.001 +strand -98 : -86 AAAAGTTAGcTTA AC RSP00405 Mean Expected Number 0.003 +strand -32 : -25 TTTGGAGT Totally 2 motifs of 2 different REs have been found Description of REs found 243. Group TF: Myb26 /AC: RSP00250//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb2 /TF: Myb26 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: armadillo/beta-catenin repeat family protein |LOCUS: AT3G09350 |PROD: the same as GENE |2871051..2873318 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +171 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.30 C - 0.17 1 ccaaagtcaa aaggtacatg cgtggcatag atttgccaat aaattaaaga 51 aaaaaaggta aattcaagaa aggcttatcg agctaattta agcccaataa 101 tactgaacta tttgggcttg agtcttaaag gcCCAATttg tggaggaggc 151 gtcatcgtct tcgcttttcc ttttcccttg agaggtcgtc gacgaggttt 201 AAGATTTTTA AGAATGTTGT AGTAGCTTCG CGAATAATCT CAGGTCTTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00889 Mean Expected Number 0.009 -strand -176 : -182 CCACGCA AC RSP00894 Mean Expected Number 0.007 +strand -140 : -133 AATTCAAG AC RSP01076 Mean Expected Number 0.003 +strand -184 : -175 CATGCGTGGC Totally 3 motifs of 3 different REs have been found Description of REs found 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: amine oxidase family protein |LOCUS: AT3G09580 |PROD: the same as GENE |complement(2942509..2944083) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.34 C - 0.16 1 gtctcttggg ctgtatccgt ctctaggaca acggtcctct ctgggactag 51 gactctggtc ttcataattt gtttttgttc agattaataa ggaaaagaat 101 caagaaaaca agacttattc gaatctttta aataattatt tgaatatata 151 tatattattt tttctagaca aataattttc ccggggaaaa taaagtaaag 201 GAATGAGAAA AACCTTATCC AAACTTTTAA AATGCCCGTG GCGATCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.009 +strand -102 : -95 ATCAAGAA Totally 1 motifs of 1 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L4/L1 (RPL4A) |LOCUS: AT3G09630 |PROD: the same as GENE |2953742..2955753 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.28 C - 0.18 1 agacaaatag tcgggtttta ttaggcccac tagttcgtta aaggctaaag 51 cagtgcccgg ttcttatagc ggaggtaact ttaaatattg ggcccttact 101 gaaaggtaaa ttagttgggt ttATTGGgct ttattataag gcccactaat 151 tcagcagtaa ccctaacgaa accctagcat atattagttc ttaaacttca 201 GCTGAGAGAA AACCCTAATT TCTCAAAGAG TCTAAAGAGA CGGAGAGTGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +18 : +10 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +10 : +18 AAACCCTAA AC RSP00713 Mean Expected Number 0.010 -strand +4 : -3 CAGCTGA AC RSP00297 Mean Expected Number 0.000 +strand -177 : -35 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.003 +strand +9 : +18 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G09700 |PROD: the same as GENE |complement(2974886..2976282) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.26 C - 0.21 1 agtactaatg gatgcaaact aaatgtaact gatccgaatt taaaccatac 51 caaaattatt gatttgataa aaccgaatcc aagagaaaat aaaccggttc 101 tgtttttatt tttttccata tcgaaagaaa tctaaaaccc actaaaagag 151 ttagaaggtt tcgactacta tttacgcaac gcaaccaacc tatctgggcc 201 AAGTCCAAGC AAACCAGGAA ATAGCTAAAA CCCTAATCCT CAAATTGATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.005 -strand +36 : +28 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand +28 : +36 AAACCCTAA AC RSP00416 Mean Expected Number 0.007 -strand -187 : -193 CATCCAT AC RSP01303 Mean Expected Number 0.010 +strand +27 : +36 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-binding S1FA family protein |LOCUS: AT3G09735 |PROD: the same as GENE |complement(2986671..2987939) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.31 C - 0.18 1 ttggtactta gtactacaat taaaatgatt tgccaaaatc aaagagaaat 51 aaatttcaat tgtcaagcgg ggttgatcag ttgtagaagt aaaatgcatg 101 ccaaaatcga agatagaaac aaatcctata gtttataatt tgcaaagtaa 151 ccccattgac caaccttgct gttacttatg gctatgagtc ttttcttggc 201 AAAACTCGTC TTCAAGCTGT CTATATTTTC TCCGGCGAGC GGTGCTGATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.010 -strand -51 : -60 TTACTTTGCA AC RSP00727 Mean Expected Number 0.009 -strand -133 : -139 GCTTGAC AC RSP01091 Mean Expected Number 0.009 +strand -88 : -78 ATAGAAaCAAA AC RSP01209 Mean Expected Number 0.006 +strand -11 : -2 CTTTTCTTGG AC RSP01454 Mean Expected Number 0.008 +strand -42 : -36 ACCAACC Totally 5 motifs of 5 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ankyrin repeat family protein |LOCUS: AT3G09890 |PROD: the same as GENE |3032564..3034448 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.31 C - 0.18 1 ccaggacaat gtatttgatt cctcaatttc caaaagataa gaagagtttt 51 cattttaact cttaaggtaa actaaacaca atatcgtctt ctttattatt 101 aaccaaattg gttcagagcc ATTGGaccga aaacatagac cgagagaata 151 taccaagtta tatacagtta attaactgcg ccaattcacc acgagaaaac 201 CTAAATTTTA TTGAGGTAGC TTATTGCACG GCGGCGATTA GTTGTTTTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 +strand -167 : -159 AAGATAAGA AC RSP00421 Mean Expected Number 0.009 +strand -62 : -56 ACCGAGA AC RSP00438 Mean Expected Number 0.005 +strand +30 : +35 GGCGGC AC RSP00633 Mean Expected Number 0.001 -strand -94 : -106 tTTGGTTAATAAT AC RSP00807 Mean Expected Number 0.005 -strand +35 : +30 GCCGCC Totally 5 motifs of 5 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 609. Group TF: S2F /AC: RSP00633//OS: Spinacia oleracea /GENE: RPL21/RE: CV /TF: S2F 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Ras-related GTP-binding protein, putative |LOCUS: AT3G09900 |PROD: the same as GENE |3034567..3036596 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.30 C - 0.15 1 gtttctttgt aagaaaactg gaatcaattt taaacatttc aaacatctat 51 attaacaaga aggaaattga gcggtttaat aagttggtgg attgaagtgt 101 gaatacttga gaaataaaag actaaaacag taaaaagtaa taaaatatga 151 tccaccaatg agcagctttg aacttgatag caagcagagc acttattctg 201 CCTCTTTCCT TTCTTTTTGG CTGTCTCCGG CGAGAAGAGA TTTTCCGGGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.007 +strand -76 : -65 AAAcAGTAAAAA AC RSP00021 Mean Expected Number 0.007 +strand -69 : -58 AAAAAGTAAtAA AC RSP00574 Mean Expected Number 0.006 -strand -1 : -8 CAGAATAA AC RSP00862 Mean Expected Number 0.001 -strand +14 : +6 AGAAAGGAA AC RSP01073 Mean Expected Number 0.001 +strand -20 : -12 CAAGCAGAG Totally 5 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: calcineurin-like phosphoesterase family protein |LOCUS: AT3G09960 |PROD: the same as GENE |3061957..3063597 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.31 C - 0.14 1 aatgtgaata ataattagtc ttttttttct tatgaaataa tgaagaaaag 51 tcattgagta cataggaatt tgaccgtacg atctgaaatg tttacacgcg 101 aagatttcga cggttgcgat gaagtacctt atgtaatcat aaccATTGAa 151 acagttgact tttgttgaca aaactatcaa acatcatcga atcaaataat 201 GCTTAGAATT ATTGATTGCA TTGCAAGAAA CAAGACTAAT GATGACCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.010 -strand -126 : -132 GGTCAAA AC RSP00523 Mean Expected Number 0.003 +strand -107 : -101 ACACGCG AC RSP00838 Mean Expected Number 0.009 -strand -88 : -93 CCGTCG Totally 3 motifs of 3 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: germin-like protein, putative |LOCUS: AT3G10080 |PROD: the same as GENE |complement(3107281..3108182) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.28 C - 0.26 1 agtcaatgta ccggcctaac cactcccata accaaaacca catatccaaa 51 cgtggttttt catttggtac aaaaacccac accttaattt cacagacgaa 101 attttggttg ataaaaagta accatcttaa ccagtctctc atttaccccc 151 accagatata catatgctta tttaaaccgg atgtaacaca actcttcttc 201 ACATGGACCT CAAGTAAAAT GGAAGCAAAC ACTTTGTTTC TTCTAAAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.008 -strand +38 : +29 AACAAAGTGT AC RSP01014 Mean Expected Number 0.007 -strand -135 : -144 CAAATGAAaA AC RSP01015 Mean Expected Number 0.007 -strand -135 : -144 CAAATGAAAa AC RSP01017 Mean Expected Number 0.003 -strand +41 : +34 AGAAACAA AC RSP01114 Mean Expected Number 0.007 -strand -94 : -100 CCAAAAT AC RSP01139 Mean Expected Number 0.000 +strand -151 : -143 ACGTGGTTT Totally 6 motifs of 6 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G10110 |PROD: the same as GENE |3116162..3117676 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.29 C - 0.23 1 aacgtggcac attcttcgtt ggtaccaatc ggatggatac acatattgga 51 ccttagtgag gctcgagtgt acaggcccaa aatgtagact aatgggccta 101 aagtggtagc tagctgtagc ttaaacccta gaacctcggg ataaaccctg 151 attaatttta tctcataggc gcgcgaacga acacgcttga tctgatttgt 201 ACAATCCCCT TCTTTTAAGC TTTTGATGAC ATTGTCCCTT GTCGGATCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00874 Mean Expected Number 0.001 +strand -105 : -95 GCCTAAAGTGG AC RSP01475 Mean Expected Number 0.001 +strand -124 : -116 CCAAAATGT Totally 2 motifs of 2 different REs have been found Description of REs found 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: reticulon family protein |LOCUS: AT3G10260 |PROD: the same as GENE |complement(3171231..3172971) |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +398 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.36 C - 0.20 1 tttcaacaag gcttgtaacg gttgataaat ctactcagaa aacttctttt 51 tgtttgtctt gcaaatacaa acgatacgtt tcaactcttt ttttggcgtC 101 CAATaatact tcttaaaaaa taatttgttt attgtcatga gctacacgtg 151 ggaagacaag tcctatccat tattactaca cactactcca acatttgccc 201 ACATTTTGAA AAAAACATTT TTTTGTAATT CAATTATTCG ACACAACCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.010 +strand -182 : -177 CGGTTG AC RSP00524 Mean Expected Number 0.005 +strand -57 : -51 ACACGTG AC RSP01032 Mean Expected Number 0.006 -strand -105 : -114 CCAAAAAAAG AC RSP01209 Mean Expected Number 0.006 +strand -114 : -105 CTTTTTTTGG AC RSP01255 Mean Expected Number 0.001 +strand -57 : -50 ACACGTGG Totally 5 motifs of 5 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G10330 |PROD: the same as GENE |3199775..3201860 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.24 T - 0.24 C - 0.16 1 aatatagggc ttcaaaacgt tgggccgggt ttgtttcaga gccctattat 51 agatagatgg gtctgaagaa gtctgaacaa acaaaaacat gtctatcata 101 ttagccgtcg atcctcatta gacacgtgga cggttgatat actgccgagt 151 tcggtatcgt cgcaaatttt gatctttcgg gaaaaagaaa gaaaagagaa 201 GAAAACAAAT CGTTGAAAAA GTAAGTAAGC TCAAGGCGCG ACGAGGAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.005 -strand -71 : -80 TCcACGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -80 : -71 GACACGTGGa AC RSP00340 Mean Expected Number 0.008 -strand -71 : -80 TCCACGTGTC AC RSP00682 Mean Expected Number 0.002 +strand -80 : -71 GaCACGTGGA AC RSP00837 Mean Expected Number 0.002 -strand -87 : -96 gGATCGACGG AC RSP01255 Mean Expected Number 0.003 +strand -79 : -72 ACACGTGG AC RSP01274 Mean Expected Number 0.006 -strand -71 : -80 TCCACGTgTC AC RSP01722 Mean Expected Number 0.000 -strand -70 : -81 gTCCACGTGTCT Totally 8 motifs of 8 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AHB2 |LOCUS: AT3G10520 |PROD: non-symbiotic hemoglobin 2 (HB2) (GLB2) |complement(3276235..3277865) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.30 C - 0.19 1 catgtattat cctacgtcta tctagactga tcggacggac ataatgtgta 51 tccatatttc ttggctacgc gtgtccacct tttagagact atgcctttag 101 gtagtagatg ttttactaca aaataaacat atttagtcaa ataaaataaa 151 atttgagaga atcttctaca taagtagctc acagacccaa ccaaaggacc 201 ATTGAATACC ATATATATAT AGATACACAG ACATATAAAC ACACAAATAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00050 Mean Expected Number 0.000 +strand -134 : -123 ACGCGTGTCCaC AC RSP00143 Mean Expected Number 0.001 +strand -135 : -126 tACGCGTGTC AC RSP00284 Mean Expected Number 0.007 -strand -163 : -168 CCGTCC AC RSP00523 Mean Expected Number 0.002 -strand -127 : -133 ACACGCG AC RSP01031 Mean Expected Number 0.009 +strand -43 : -36 AGAATCTT AC RSP01505 Mean Expected Number 0.000 +strand -172 : -164 GATCGGACG Totally 6 motifs of 6 different REs have been found Description of REs found 49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycosyl transferase family 1 protein |LOCUS: AT3G10630 |PROD: the same as GENE |complement(3321468..3323216) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.34 C - 0.25 1 ttgataaacc tccttttggc tttctcattg aatttataaa ttgtcttatt 51 tcacagatat catattttca atcatcaaaa acacaaatga ggagaatttt 101 ctacttgcag aacatatgcc aaaaaaaacg ttaaatgggc catccaaaat 151 cttaatgggc ctctcgtcgc tttgaatctc cctctccttc tctctgtccc 201 TTTCTCTTTC TTCCCTGTCT TCATCGATGG ATCAACCACC AGATCGAAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.006 -strand +11 : +3 AGAAAGAGA AC RSP00935 Mean Expected Number 0.000 +strand -20 : -7 CCTCTCCTTCtCTC AC RSP01104 Mean Expected Number 0.008 +strand -195 : -188 AAACCTCC AC RSP01755 Mean Expected Number 0.006 +strand +33 : +40 CAACCACC Totally 4 motifs of 4 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 864. Group RE: CT element /AC: RSP00935//OS: Pinus sylvestris /GENE: GS1a/RE: CT element /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G10770 |PROD: the same as GENE |complement(3372275..3374276) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +245 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.13 T - 0.24 C - 0.18 1 gaaaaatgaa atgtgacacc aaccaaacat tatactttta tgattccacc 51 aaaatcaact ttacaaaacc cacttctcga ttaaaaaatg tcacactgta 101 ttaacataaa atattcaaaa agtccgacaa attaactcaa gaaaaaaaca 151 cagagaaaaa tgaatgaata aaaaaaaaca ggaaaggaag caactttcgt 201 ATTATTCTCT TCCCCACTTG ATTGCGATTT GAGAGAGATA AAGGTCGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.010 -strand -136 : -143 TGTAAAGT AC RSP00522 Mean Expected Number 0.005 +strand +14 : +20 CCACTTG AC RSP00654 Mean Expected Number 0.003 +strand -134 : -125 aACCCACTTC AC RSP01136 Mean Expected Number 0.008 -strand -183 : -189 TGTCACA Totally 4 motifs of 4 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G10860 |PROD: the same as GENE |3399741..3400732 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.21 T - 0.34 C - 0.19 1 cgatcgtcct tctcctccgg aacactagct gtatcatcat catcatttat 51 gtctggacta gtgatttatc tatttcggtt tactcaaacc ggatcgaacc 101 gaaacaaatc aggataaatt ttgcagccgg tcatccggtT CAATtgtaat 151 tgtaactgaa ccggaatcgg ataaaaaaca taagcttcgt tgagaattgt 201 TTATTTTAGG TTTTGGGGGA GATTCGTTCT CGTACTGTGG ATTGTTGTTG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MSD1 |LOCUS: AT3G10920 |PROD: superoxide dismutase (Mn) |3417982..3419858 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.29 C - 0.22 1 acaaacaaaa aagtaacatt tagccgtcac aaaatattaa aaattacgct 51 ttattatatt aaggccttgg gctcactaat ccaatattac ggcccataaa 101 taaaaatcac atgtctacgt gtcaaaacag tcacttttct ctatacatga 151 caggcagtga tattatcata accctccact tatacacatg ttcatttttg 201 GCGACCACTA GAAGGAGAAA CAAATCTTCA TTCCAACAAT GGCGATTCGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.004 -strand -78 : -87 GACACGTAGA AC RSP00070 Mean Expected Number 0.002 +strand -85 : -78 TACGTGTC AC RSP00188 Mean Expected Number 0.003 +strand -87 : -78 TCtACGTGTC AC RSP00340 Mean Expected Number 0.003 +strand -87 : -78 TCtACGTGTC AC RSP01035 Mean Expected Number 0.006 +strand -84 : -78 ACGTGTC AC RSP01056 Mean Expected Number 0.005 -strand -181 : -191 AATGTTACTTT AC RSP01260 Mean Expected Number 0.002 +strand -86 : -79 CTACGTGT AC RSP01469 Mean Expected Number 0.006 +strand -94 : -85 TCACATGTcT Totally 8 motifs of 8 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein phosphatase-related |LOCUS: AT3G10940 |PROD: the same as GENE |complement(3422083..3423445) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.35 C - 0.16 1 aactttctac actctctctc cttcattttc attattttta tttttttaat 51 tgtgagaaac tcttatgaga tacctcaata gagatggttt tagggtttta 101 tTCAATgggc tataataatc tatcatttaa agcccattaa ataaaaagcc 151 caataacaca atgtcgtttt cgtttgtgtg acggacgatt attgtaaaac 201 ACAGATATCA ATGTTGCATC AGGTGAAGAA CGAGAGATAG AGAACGATGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.007 +strand -170 : -159 AtTATTTTTATT AC RSP00140 Mean Expected Number 0.003 +strand -171 : -159 cATTATTTTTATT AC RSP00279 Mean Expected Number 0.002 +strand -111 : -103 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -103 : -111 AAACCCTAA AC RSP00653 Mean Expected Number 0.002 +strand -189 : -179 cTCTCTCTCCT AC RSP00750 Mean Expected Number 0.006 +strand -12 : -1 TTATTGTAAAAc AC RSP00865 Mean Expected Number 0.000 -strand -180 : -188 GGAGAGAGA AC RSP01063 Mean Expected Number 0.002 -strand -75 : -86 ATGATAGATtAT AC RSP01303 Mean Expected Number 0.004 -strand -102 : -111 aAAACCCTAA Totally 9 motifs of 9 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: xanthine/uracil permease family protein |LOCUS: AT3G10960 |PROD: the same as GENE |complement(3424818..3427002) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +272 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.30 C - 0.12 1 taacatacaa aaaaaaaaaa aactctatgt tgattttttt tgttaattaa 51 tacaaagctg caatacttaa tcatcaaaac tatggatata taattatact 101 cttgccttaa tagacgtgtg aatacatggg ataaaattac cgacaacaaa 151 aaattaaaaa caaattcatg gatgattata agaattgtgg aacgaatttt 201 CAATTGTCAG AGATTATATT AGAAAACTGT AACAAATAAA AAGTGAGCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.009 -strand -72 : -78 CCATGTA AC RSP00110 Mean Expected Number 0.000 -strand -81 : -88 CACACGTC AC RSP00423 Mean Expected Number 0.009 +strand -88 : -83 GACGTG AC RSP00424 Mean Expected Number 0.009 -strand -83 : -88 CACGTC Totally 4 motifs of 4 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G10970 |PROD: the same as GENE |complement(3433078..3436284) |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +202 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.33 C - 0.25 1 atttcactgg cccattaacg ttcctatttg tatataccca acattccaac 51 aaagtccata attcactgat ccgaaagttt ttactttaag cgttagtatt 101 tgtgtcagat gcagacttcc tggtgttttc actTCAATaa aacgacgtaa 151 cgtctcatac taagaacgta aaacggcatc aatggcgtga tccactggat 201 AACAATTTCA GCTTGCTCTC TTTCACCTTC TCTCTCTCTC ACTACGTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.004 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +37 : +29 AGAGAGAGA Totally 2 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT3G11210 |PROD: the same as GENE |complement(3510669..3513066) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +161 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.32 C - 0.11 1 ttttggtaga gagcatttca agtaaaaaat actttgagaa acaaaaagag 51 aaaactagta tgagaaacaa atccttaaaa aaggaaataa cagtaatgca 101 cgtgatgata taacaaaagg ttttgttttg tttgtttttt tATTGTtttt 151 ttcttctttt atttgtctgt tataataatc aaaaaacaag aagaaaaaac 201 GAGACGTTCA TGCATTTAAT CTCGCACCTT ACGACAAAGA GTGAGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00350 Mean Expected Number 0.000 +strand +5 : +15 CGTtCATGCAT AC RSP00642 Mean Expected Number 0.008 -strand +18 : +11 TAAATGCA AC RSP00966 Mean Expected Number 0.001 +strand -104 : -95 tGCACGTGAT AC RSP01210 Mean Expected Number 0.002 -strand -118 : -127 CTTTTTTAAG AC RSP01470 Mean Expected Number 0.006 +strand +8 : +17 TCATGCATtT Totally 5 motifs of 5 different REs have been found Description of REs found 335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S acidic ribosomal protein P0 (RPP0C) |LOCUS: AT3G11250 |PROD: the same as GENE |3521366..3523006 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.26 C - 0.25 1 gctcctgatc aacgccttgt agtttttacc aaaatgaacg acacgaagtt 51 ttcttctaac attaaaaaaa cgtcacgcgt gttatcttgt caatttgggc 101 ctaattttag ttaaagcCCA ATtcccatca aagtaaacaa gagccgtcag 151 atcacaaatt aatcaaaaca aacacgaacc gttagattta gatcgccgca 201 AAAACCCTAA CTTCCTTCAT CATCTTTCCC AAACACTCTC CGAAACAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.006 -strand +10 : +2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.006 +strand +2 : +10 AAACCCTAA AC RSP00523 Mean Expected Number 0.003 -strand -119 : -125 ACACGCG AC RSP01497 Mean Expected Number 0.001 +strand -58 : -49 GCCGTCaGAT AC RSP01708 Mean Expected Number 0.010 +strand -100 : -91 CTAATTTTAG AC RSP01708 Mean Expected Number 0.010 -strand -91 : -100 CTAAAATTAG Totally 6 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: myb family transcription factor |LOCUS: AT3G11280 |PROD: the same as GENE |complement(3533261..3534853) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +454 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.11 T - 0.36 C - 0.25 1 tccaaagaat taaataatag aatcaaatag atcaatcaac tttttttttc 51 tttctgagaa aaatgaaccg caagaatccg agtggagtgg tgccattcgc 101 tgttctCCAA Tccaaatacg ccaaatcttc ccaaaaataa agaaaccttt 151 ccttttcttt ctcttcactc tgttcccata tctacagtga ctcttctctc 201 TCTGTATATT ACTCTTCCTT CACTATCTCT CTCTCTTTAC TGGGTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.006 -strand +36 : +28 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand +34 : +26 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand +3 : -6 AGAGAGAGA AC RSP01091 Mean Expected Number 0.004 +strand -184 : -174 ATAGAATCAAA AC RSP01092 Mean Expected Number 0.005 +strand -184 : -174 ATAGAATCaAA Totally 5 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: EIF3G1 |LOCUS: AT3G11400 |PROD: |3578394..3580535 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.20 T - 0.26 C - 0.15 1 agttctttta aaagaagaat caatcctgta aataagtgtt ataacgaaaa 51 gcccaaaaaa cataagagag tctaaattaa ttcctagaag agggtaagag 101 gcttagtgga gcgggcctgg acacagcttt ttgtagatat tagaatttta 151 aaaattgaat ttcttcacat taaaattgct actggaccaa gtaaaattct 201 GAAGGAATCA AAACGGTGCG TTCCGGTTAC GGAGCACACA CAGATAAGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01053 Mean Expected Number 0.006 +strand +43 : +51 GATAAGATA Totally 1 motifs of 1 different REs have been found Description of REs found 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G11600 |PROD: the same as GENE |3667235..3667985 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.39 C - 0.17 1 gctttcattc gaattttatt atttgaatct tagtagtatt tgcgatgttc 51 aaaagtaaaa agttactata attgttcgca gttaaagact agctagtctc 101 tctagctatt atcgttggag tattatttat atattttcac ctatcataat 151 taaattaggc cttaatgaat atatctctct ctctccctct aaccaacttt 201 ATGTTTGTTT TATAAAATGG CATAAGCATA ACCAACAAGA AGACGACTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 +strand -151 : -140 cAAAAGTAAAAA AC RSP00503 Mean Expected Number 0.002 +strand -112 : -105 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand -105 : -112 CTAGCTAG AC RSP00864 Mean Expected Number 0.002 -strand -17 : -25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -19 : -27 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -15 : -23 GGAGAGAGA AC RSP01463 Mean Expected Number 0.010 +strand -76 : -64 ATTTATATATTTt Totally 7 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 2-cys peroxiredoxin, chloroplast (BAS1) |LOCUS: AT3G11630 |PROD: the same as GENE |3672126..3674081 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.26 T - 0.24 C - 0.18 1 agtagattag atactttgga gaactgaacc accgatcgga ggaagaaagt 51 aacggagaga cggagttacc caaggtagaa gaagaagacg catatttgca 101 GCAATagtaa tacgacctcg ttttgagtaa cgcgacgtcg ttttatgagt 151 ttgggtgtcg tcaggcttat ctccacctca tacttccact acaaagagag 201 GTGATTGACA GATAGATAAG AGTGTTTGGT AGCTCAGACT CAGAGAGTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 +strand -36 : -30 GCTTATC AC RSP00847 Mean Expected Number 0.002 +strand -28 : -19 CCACCTCATa AC RSP00969 Mean Expected Number 0.001 -strand -37 : -46 CTGACGACAC AC RSP01651 Mean Expected Number 0.000 +strand -84 : -76 CTCGTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G11745 |PROD: the same as GENE |complement(3713769..3714585) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.27 T - 0.20 C - 0.13 1 cgttcatgtg tttggtgtgg tgaaaaaatg aacgtgtaga aacggaagga 51 aaaattccct aacatagtca aagactttga tcagatgggt ttgattgggc 101 taacaagtaa aaataaaaag tggcgggtaa aggaaaaaat cgggctatgg 151 cccaataaaa taggcggata agggaatagg caggcccatt taaacccttt 201 GGTTGGAAGA GAAAGAAAAT CACAAAATCA GAGGAGGAGA CGAAGAAGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.002 -strand +30 : +20 TGAtTTTGTGA AC RSP00397 Mean Expected Number 0.004 +strand -82 : -75 AGTGGCGG AC RSP00607 Mean Expected Number 0.000 -strand +32 : +17 TcTGATTTTGTGATTT AC RSP00857 Mean Expected Number 0.007 -strand -113 : -122 CCATCTGAtC Totally 4 motifs of 4 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown 583. Group RE: AT-rich F /AC: RSP00607//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich F /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G11780 |PROD: the same as GENE |complement(3724153..3725595) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.34 C - 0.24 1 agtgggtaac ttgaattgaa atcgttaaac aaatcccacc taacagtttg 51 ttcactgcta atcctatgtc attaaccaca ccgtaacaga ttaattacga 101 aatctgaacc gtttatttta agtaatcatg gacccacgtt aatgaacgga 151 taagatcaat ccgacatttc ttgcgatttg agaatcccga ttccgcattt 201 CTGTCTTTGT CTCTTGCTTG TTTAGTCTCT CCTCTCCTCC TCGTCCTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.009 +strand -166 : -157 CCCACCTAaC AC RSP00681 Mean Expected Number 0.003 -strand -104 : -112 TAATTAATC AC RSP00722 Mean Expected Number 0.010 +strand -52 : -46 GATAAGA AC RSP00749 Mean Expected Number 0.002 -strand -98 : -109 ATTTcGTAATTA AC RSP00894 Mean Expected Number 0.008 -strand -184 : -191 AATTCAAG AC RSP01640 Mean Expected Number 0.010 +strand +5 : +14 CTtTGTCTCT Totally 6 motifs of 6 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: U-box domain-containing protein |LOCUS: AT3G11840 |PROD: the same as GENE |complement(3736414..3738261) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +5 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.35 C - 0.18 1 agtatacgtg aagagtgatt tcatttcatt gacaaataaa cagacacgtg 51 tcatgttttg atagtgaata tttctttgtc taaaaaacat atgttagtgg 101 aattcaaaag cgaagaCCAA Ttaagtaaac ggagccgcca tttcttactt 151 ccaccacatg tttctcttct tcttcatctt tactattatt ctagatcatc 201 ATTATATGAA TATATATACG TACACAAAAT CATACGTTTT TCCACAAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.002 +strand -68 : -62 AGCCGCC AC RSP00069 Mean Expected Number 0.002 +strand -83 : -73 CAATTAAGTAA AC RSP00143 Mean Expected Number 0.001 +strand -158 : -149 GACaCGTGTC AC RSP00143 Mean Expected Number 0.001 -strand -149 : -158 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -158 : -149 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -149 : -158 GACACGTGtC AC RSP00438 Mean Expected Number 0.005 -strand -62 : -67 GGCGGC AC RSP00524 Mean Expected Number 0.006 +strand -157 : -151 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -150 : -156 ACACGTG AC RSP00807 Mean Expected Number 0.005 +strand -67 : -62 GCCGCC AC RSP00999 Mean Expected Number 0.004 -strand -134 : -144 TCACTATCaAA AC RSP01011 Mean Expected Number 0.000 +strand -68 : -60 AGCCGCCAT AC RSP01035 Mean Expected Number 0.006 +strand -155 : -149 ACGTGTC AC RSP01035 Mean Expected Number 0.006 -strand -152 : -158 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -157 : -150 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -150 : -157 ACACGTGT Totally 16 motifs of 11 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G11930 |PROD: the same as GENE |3776243..3777700 |SUPPORT | 4 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.27 C - 0.23 1 tctcagcttc ttttttccct tttcctttat agtgagtggc gttttaaaac 51 taaaagcaaa cggatcaaga tagagaaagc cacgatcaaa gcaaaaccat 101 aagcaaacaa acaccaaacc actaaaagaa taccgcacac aacttctttc 151 tatcacatga atctcctttt aacaaataaa ataataataa agtaaggatt 201 ATGCATATCT TATTGCACGT GGCCGGTGCC CTTTGAGACG TATCACCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.001 -strand +23 : +14 GCCACGTgCA AC RSP00153 Mean Expected Number 0.002 +strand +15 : +24 gCACGTGGCC AC RSP00175 Mean Expected Number 0.001 +strand +16 : +23 CACGTGGC AC RSP00243 Mean Expected Number 0.001 +strand +26 : +33 GTGCCCTT AC RSP00682 Mean Expected Number 0.001 -strand +23 : +14 GCCACGTGcA AC RSP01034 Mean Expected Number 0.003 +strand +17 : +23 ACGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 236. Group TF: MNF1; MNB1a; MNB1b /AC: RSP00243//OS: Zea mays /GENE: PEPC/RE: MNF1 BS core /TF: MNF1; MNB1a; MNB1b 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Aha1 domain-containing protein |LOCUS: AT3G12050 |PROD: the same as GENE |3839108..3841472 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +187 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.32 C - 0.17 1 atgacaattc gaaagttcat gtttttttcg tttcaaattt gaaagttcgc 51 gtattttttg acatttttcc caaaagaatt ctcccaataa caggaaggat 101 tatgtaagcc caagaaGCAA Ttttcctaca ttctagacac ttctaataaa 151 agcccgtttc aaaattaatt tgttaaatat actttaagaa aaaaaaaggc 201 AAATTGTCCC CAAAAAAAAA AAAAAAAAGT TTCTAGAGGC TTCGTTAGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01030 Mean Expected Number 0.008 -strand +34 : +27 AGAAACTT Totally 1 motifs of 1 different REs have been found Description of REs found 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: geranylgeranyl transferase type II beta subunit |LOCUS: AT3G12070 |PROD: the same as GENE |complement(3845221..3847550) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +404 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.21 T - 0.35 C - 0.17 1 accggatgaa ccggtttaat tcgcaaaact cgattcttct ggttttgatt 51 aaaatcggat tggacatgaa ggatttgaat cggttcaatt aagagagcca 101 gATTGAtttc ggtttagtct gggttaccca aaaaagtctg gtattagtga 151 ccaaattaat gtttgactgt cttcttcgtc gtatcgccca aaagaatttc 201 TTAGATTTTG GCTTCTCTTC TCTAGGTTAG TTCCATTTAT CAAAGAAGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.003 -strand -65 : -74 CTTTTTTGGG Totally 1 motifs of 1 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: FAD2 |LOCUS: AT3G12120 |PROD: omega-6 fatty acid desaturase |complement(3860291..3863036) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1287 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.22 C - 0.21 1 gggttatttg cggtaaataa aaataccaga tattttgaat tgattaaaaa 51 ggttgaaata agagaggagg ggaaagaaaa gaaggtgggg gcccagtatg 101 aaagggaaag gtgtcatcaa atcatctctc tctctctctc tctaccttcg 151 acccacgggc cgtgtccatt taaagccctg tctcttgcca ttccccatct 201 GACCACCAGA AGAAGAGCCA CACACTCACA AATTAAAAAG AGAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.006 -strand +36 : +26 TtAATTTGTGA AC RSP00509 Mean Expected Number 0.001 +strand -183 : -172 TAaAAATACCAG AC RSP00621 Mean Expected Number 0.001 -strand -129 : -137 CCCCTCCTC AC RSP00741 Mean Expected Number 0.003 +strand -154 : -143 AAAAGGTTgAAA AC RSP00857 Mean Expected Number 0.007 +strand -6 : +4 CCATCTGAcC AC RSP00864 Mean Expected Number 0.003 +strand +39 : +47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +41 : +49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +43 : +51 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -58 : -66 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -60 : -68 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -62 : -70 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -64 : -72 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -66 : -74 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -68 : -76 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -59 : -75 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -61 : -77 GAGAGAGAGAGAGAGAt AC RSP01499 Mean Expected Number 0.002 +strand -10 : -1 TTCCCCaTCT Totally 17 motifs of 8 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G12130 |PROD: the same as GENE |complement(3864158..3866596) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +184 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.29 C - 0.23 1 ggaaaacatg acgtcatcca tttgacattt tagcttatcg taaacaggcg 51 caccgcttac ttcacggccc acgttaagct aaatctttcc ggtttattgt 101 cctttacaga gaaatttcgg tttacatctt attttgtgca ctgggccacg 151 ccggtttaag ttccaataaa aaaaaccggc aagagtaaac aaaaaagagg 201 AAAATCTCAT CTTTTTCCCT CGACGACAAC CACCTTAGGG TTAGGTTTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.006 -strand +47 : +38 AACCTAACCc AC RSP00445 Mean Expected Number 0.009 +strand -10 : -1 AAAAAAGAGg AC RSP01075 Mean Expected Number 0.001 -strand -47 : -56 CCgGCGTGGC AC RSP01654 Mean Expected Number 0.009 -strand -183 : -192 GATGACGTCA AC RSP01664 Mean Expected Number 0.000 +strand -194 : -183 cATGACGTCATC AC RSP01664 Mean Expected Number 0.000 -strand -183 : -194 GATGACGTCATg AC RSP01731 Mean Expected Number 0.000 -strand -183 : -194 GATGACGTCATg AC RSP01755 Mean Expected Number 0.004 +strand +27 : +34 CAACCACC Totally 8 motifs of 7 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1482. Group TF: HY5 /AC: RSP01664//OS: Arabidopsis thaliana /GENE: ARR9 (At3g57040)/RE: C-box (2) /TF: HY5 1539. Group TF: STF1/HY5 /AC: RSP01731//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CRE (A/T) /TF: STF1/HY5 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: tetrahydrofolate dehydrogenase/cyclohydrolase |LOCUS: AT3G12290 |PROD: the same as GENE |3919509..3921526 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.29 T - 0.27 C - 0.20 1 acggcggggt cgaaacaaac ggagtgggcc attaacgccg tctgggtttt 51 cgtgaccgcg acaaagcctc gtgtgagtta tgattgggcc cacccttaat 101 acgatgccgt ttctagttta ggtcacgcgg gaaattacat atttgccatt 151 gtagaacgtt tggttgcaga agtatgagtg tcctatccgc ggatggattc 201 AGATTAAGTC TTCTTCGTCA TCTTCGAGTG TGAGTGGATC CAGAGAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.004 -strand -67 : -74 TTTCCCGC AC RSP00040 Mean Expected Number 0.007 +strand -187 : -181 AACAAAC AC RSP00379 Mean Expected Number 0.003 -strand -12 : -21 CGGATAGGaC AC RSP00756 Mean Expected Number 0.007 -strand +34 : +27 CTCACACT AC RSP00864 Mean Expected Number 0.001 +strand +42 : +50 AGAGAGAGA AC RSP01075 Mean Expected Number 0.006 -strand -70 : -79 CCCGCGTGaC AC RSP01772 Mean Expected Number 0.010 -strand -166 : -172 TTAATGG Totally 7 motifs of 7 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) 1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ribosomal protein L10 family protein |LOCUS: AT3G12370 |PROD: the same as GENE |complement(3937197..3938101) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.34 C - 0.18 1 attaattgtg gagtttctta tttgattagc tttagctgtc tctagatcaa 51 tgaacgatgc tttaggacaa aaataccaaa atttatttgg acaaatacaa 101 aaatctataa atcataaaaa aattagaatt tctaaaaata atatagtttt 151 gtcatttcct tagcccaact caaaatagcc caaagtaaac ctctccgatt 201 CTCTTAAGTC TGAGGTAAGA ACCCTAGCAT TTCTCATTTT GAATCTCGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01598 Mean Expected Number 0.009 +strand -51 : -44 TGTCATTT Totally 1 motifs of 1 different REs have been found Description of REs found 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G12400 |PROD: the same as GENE |complement(3944303..3945858) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.31 C - 0.22 1 ataaaacttt gatcacaaac tcgctttatg ttttgggtgt taaactttgg 51 actttggaac atgtccactc cttacaaatt tttatggagt aaaccggatt 101 aaacactatc caaaacaaca ctgaagggta aaagagtaaa tagctaataa 151 agacgcgtat aataacatta cttcttcttc ttaaatcgaa tctcctcccc 201 AGTTGTCGTC GTCATCTTCA ATTTGGACTT CCAACGCCGA CACCGTTTAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01767 Mean Expected Number 0.008 -strand -117 : -125 TAAAAATTT Totally 1 motifs of 1 different REs have been found Description of REs found 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G12470 |PROD: the same as GENE |complement(3956064..3956834) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.24 C - 0.18 1 taaaaataaa aattcagagc cgtaaaatac agtaattagt aaatgttttg 51 cgtatacatc tatgataggc ctgacgatgt gacagtacat gcatctccat 101 tgtcaaccgt acgattaaaa ctacaaagat cgacggtgat tataactaga 151 aacaaaaatg taccctataa caagaaaaag aaaccgcttc tctttctaac 201 ACTCGCTCAA AAATTTAGAG AAAGGAAGAA GAAGACAGAT CAATGGCTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.004 +strand -154 : -148 TTTGCGT AC RSP00837 Mean Expected Number 0.004 +strand -74 : -65 AGATCGACGG AC RSP00861 Mean Expected Number 0.000 -strand -4 : -12 AGAAAGAGA AC RSP00862 Mean Expected Number 0.005 +strand +19 : +27 AGAAAGGAA AC RSP01068 Mean Expected Number 0.009 +strand -123 : -115 TGTGACAGT AC RSP01150 Mean Expected Number 0.007 -strand -54 : -64 AgTTATAATCA Totally 6 motifs of 6 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DRT100 |LOCUS: AT3G12610 |PROD: DNA-damage-repair/toleration protein |complement(4006406..4007814) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.31 C - 0.20 1 tttttttaaa aagtaaaact gacatacaca catgatactc atctttagta 51 caatagatta aagggtataa gaatacattc gtaagataat atatagaaca 101 atagtagtaa catgcacatg cccatgatac catgcacatg caaatgtctc 151 tctctccttt tctacgtttc tatataatcc aaagactcat tacacaacac 201 CACTCTATAT CAAACATTTC TTTTAAAAAT GAGAAAGTTG TTGGCATCGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.010 +strand -90 : -84 CATGCAC AC RSP00016 Mean Expected Number 0.010 +strand -70 : -64 CATGCAC AC RSP00021 Mean Expected Number 0.008 +strand -193 : -182 AAAAAGTAAAAc AC RSP00068 Mean Expected Number 0.003 -strand -31 : -40 GAaACGTAGA AC RSP00331 Mean Expected Number 0.005 +strand -75 : -67 GATACCATG AC RSP00653 Mean Expected Number 0.002 +strand -53 : -43 cTCTCTCTCCT AC RSP00850 Mean Expected Number 0.007 -strand +45 : +40 GCCAAC AC RSP00864 Mean Expected Number 0.001 -strand -46 : -54 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -44 : -52 GGAGAGAGA AC RSP00943 Mean Expected Number 0.010 +strand -14 : -4 TCATTaCACAA AC RSP01086 Mean Expected Number 0.006 +strand -40 : -31 TcTACGTTTC AC RSP01596 Mean Expected Number 0.010 -strand -4 : -14 TTGTGtAATGA AC RSP01642 Mean Expected Number 0.006 +strand -59 : -50 AAATGTCTCt Totally 13 motifs of 12 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: zinc finger (AN1-like) family protein |LOCUS: AT3G12630 |PROD: the same as GENE |4012615..4013590 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.27 C - 0.20 1 aaaatgtgag aaagagaaac atgttgttgt ccgctgtatg gcgtcataag 51 ccattctaga atcattgaaa tgcatattta atcctctctg gtaattccaa 101 aaaagcgatg agggtattaa cgtaaatcca ccagaagacg agaaagtggg 151 gatggtggaa ggagagatga taagagagat ggaaacgcgt ctctctatga 201 GGCCCATATT CCATTCTTAC CTCTCTCTAC CTCTCTATCT CTCTCTCCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.004 -strand -10 : -19 GACGCGTtTC AC RSP00653 Mean Expected Number 0.001 +strand +39 : +49 cTCTCTCTCCT AC RSP00861 Mean Expected Number 0.002 +strand -192 : -184 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +46 : +38 AGAGAGAGA AC RSP00865 Mean Expected Number 0.000 -strand +48 : +40 GGAGAGAGA AC RSP01016 Mean Expected Number 0.008 +strand -186 : -179 AGAAACAT Totally 6 motifs of 6 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT3G12640 |PROD: the same as GENE |4014462..4017851 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.32 C - 0.20 1 tccgacagaa acccaaaccc tagtaccacc accttgaagc tccttaattc 51 tatccgttct cgaattgaat cgtgcatagg ttagggtttt agtggcgtgt 101 atatatatat tCCAATttgt tgattccttg ggctctctca ttgcggtggc 151 aacaagttaa ggtctttgat aataatctcg taaaggaatt ttcagtgaag 201 ATGGGAAGCG CCGATCTAGT CGATGATCGG ACCTTTAACG GTGATTTCAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 +strand -120 : -112 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand -112 : -120 AAACCCTAA AC RSP01201 Mean Expected Number 0.003 +strand -166 : -159 TGAAGCTC AC RSP01303 Mean Expected Number 0.005 -strand -111 : -120 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: methyladenine glycosylase family protein |LOCUS: AT3G12710 |PROD: the same as GENE |complement(4040331..4041989) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.41 C - 0.19 1 aacacaaata gttaggggaa gacttaaagg tcacatggga tgatttggtg 51 gcatcattgc atcaaatcct gcacatgctc tgcttcttct cttttctata 101 ttccttctct ctttttattt tgttgttact tgttgTCAAT actaatacaa 151 aatttatcca cacggtttta tttttagaat aatgttcaca tattattatt 201 ACGAGTATAT AACTACCTTT CAATTCTCTC TGCCTCTCAT AGTTAATATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.007 +strand -72 : -63 CTTGTtGTCA AC RSP00914 Mean Expected Number 0.001 +strand -162 : -153 GATGATtTGG AC RSP00915 Mean Expected Number 0.001 +strand -162 : -153 GATGATtTGG Totally 3 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G12740 |PROD: the same as GENE |4049522..4052050 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.33 C - 0.18 1 ttttgttctt gtttcttttt gtctccctaa ttcaatattc atgctgtgat 51 cataagtcca taacaaaata aaatacttgg tcatgcatta atctcgtaat 101 atttagttgt atttttcagc ttacaacaaa aaacaaaaaa acaaaaacag 151 agcagtagta gcaaaaagaa aaaagggaca gtctttacca ataggaaact 201 GACACGATCC ATCCTAAGAA ACTTCAATTT TGGGGTTTCT CTTCGTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.002 +strand -186 : -176 CtTTTTGTCTC AC RSP00934 Mean Expected Number 0.002 +strand -102 : -93 ATATTTAGTT AC RSP01017 Mean Expected Number 0.008 -strand -185 : -192 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PGK1 |LOCUS: AT3G12780 |PROD: phosphoglycerate kinase, putative |complement(4060978..4063230) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.31 C - 0.15 1 aaaatgtttt ggtttattga attacattgg agactgagaa aatggtatta 51 agattatgta gatcaaacta tcttatgcac aataaagtag ctttctttgc 101 aaaagaggca aaacagtaac gaatatatga tcaaaaagat aatcgctttt 151 gaacctctca tcagtgataa gagagaaata ttccaaactc ataaaatctc 201 AAATGGCTAA TAAATAAGAA CATTGTGAGT CACTCTCTCT GTTTCTCATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.010 -strand -100 : -106 TGCAAAG AC RSP00332 Mean Expected Number 0.008 +strand -159 : -152 ATGGTATT AC RSP00961 Mean Expected Number 0.006 +strand -103 : -96 TGCAAAAG AC RSP01061 Mean Expected Number 0.000 +strand +25 : +33 GTGAGTCAC Totally 4 motifs of 4 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: auxin-responsive protein-related |LOCUS: AT3G12955 |PROD: the same as GENE |complement(4135507..4136150) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.21 T - 0.30 C - 0.12 1 aagatgaaaa gttctgagat aataattgat atatttgggg atctgcctaa 51 aggaaaagta atgtggaagt ttatgaatca agtgagtaca ttacttgaaa 101 acctaattat aaattaaatg gttaagaATT GAgagacgta gcacctacct 151 tctcgctctt tatataactc cctttctatc tttctgagtg tgtttcaagt 201 ATCTTCTTGA GACAGCAAAA TAAAAGAGAG AGATAGAGAG AGAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00433 Mean Expected Number 0.000 -strand -49 : -60 GaAGGTAGGTGC AC RSP00864 Mean Expected Number 0.003 +strand +25 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +35 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +37 : +45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +39 : +47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +41 : +49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +43 : +51 AGAGAGAGA AC RSP00953 Mean Expected Number 0.008 -strand -173 : -181 CAATTATTA AC RSP01453 Mean Expected Number 0.002 +strand -58 : -52 ACCTACC Totally 9 motifs of 4 different REs have been found Description of REs found 413. Group TF: AtMYB84 /AC: RSP00433//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB84 BS /TF: AtMYB84 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 30S ribosomal protein S10, chloroplast, putative |LOCUS: AT3G13120 |PROD: the same as GENE |complement(4219790..4221637) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.19 T - 0.29 C - 0.15 1 actaggttag aatatttttg gtccccaaaa gaactataaa atatgggcct 51 aatgggtact tttggtccct aacagaaact atacaatttg ggcctaatgg 101 gtattcattt ataataagcg taggcctttt aatgaattaa tgggcttaga 151 ataaataata tctcatcatt taaaaaagag agaaaaaggt tttggataaa 201 ATGGATAACC CTCAAGAAGA AGCTGCTGAA GAAGAAACCT CATCCTTCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.004 +strand -29 : -20 AAAAAAGAGA AC RSP00530 Mean Expected Number 0.008 -strand -22 : -33 TCTTTTTTAAaT AC RSP00698 Mean Expected Number 0.006 +strand -68 : -58 TGAATTAATgG AC RSP00773 Mean Expected Number 0.003 +strand -68 : -59 TGAATTAATG AC RSP00778 Mean Expected Number 0.005 +strand -68 : -59 TGAATTAATG AC RSP01103 Mean Expected Number 0.005 +strand +35 : +42 AAACCTCA Totally 6 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT3G13160 |PROD: the same as GENE |complement(4229978..4231293) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.34 C - 0.12 1 ttagtgcaaa ccaaatgcat tggtagaatg gacaaatgaa catagtttta 51 atggaaaaat cataaatata cagattataa aaaataattc tcagttttta 101 atttttaata atacaaagta cattcactaa tgactaatga gtaataagtt 151 tgaaattttg aataatacaa aagtaattta gggttcattt gctttatatt 201 GTTACCAAAC CTAATTTGAA GTATTAAAGC CGTTCCCCTG ACTAAAAACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.008 +strand -24 : -18 TTTAGGG AC RSP01303 Mean Expected Number 0.002 -strand -14 : -23 TgAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -14 : -23 TGAACCCTAA AC RSP01687 Mean Expected Number 0.004 -strand +32 : +26 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G13175 |PROD: the same as GENE |complement(4235133..4235731) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +144 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.31 C - 0.16 1 ttcattcttt gacttttacg acaactttac aaaaaaaaaa atgttcatac 51 aagtcacaga acaaagtaac ataaaaatct taaaaatata ttatcatttt 101 cgttagaaga aaaacagtat aattttcaaa cgcgtttaaa aacaaaataa 151 cttgagattt tgacgttatc cttgtcacag agaatctttc ctatttcttt 201 ACGTATAGAC ACTCAGAGGA AAGACAGAGA GAGAGTTAGC ATTGTACTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand +26 : +34 AGAGAGAGA AC RSP01031 Mean Expected Number 0.010 +strand -20 : -13 AGAATCTT AC RSP01056 Mean Expected Number 0.007 -strand -128 : -138 tATGTTACTTT Totally 3 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ubiquitin family protein |LOCUS: AT3G13235 |PROD: the same as GENE |complement(4271343..4274436) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.26 T - 0.26 C - 0.15 1 acaattaact tatgaggaaa cggtcgggat ttaaaaagat tcaggggtag 51 tttcgggatt taaccaatac ggggtagttt cgggatttga agaccaatat 101 cggtggaagc ttctgggtcg aaaggcgggt ttaaggtggt ttggcttttc 151 ttataagcca gagttaacat aaaacctgaa gtaaagccat ctaaggaagt 201 CACAGAGATT CTGATTTATA AAATTGACCA AAACAAGTCA CAGAGGAGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 -strand +30 : +21 TGGTCAATTt AC RSP00468 Mean Expected Number 0.001 -strand +31 : +21 TTGGTCAATTt AC RSP01032 Mean Expected Number 0.008 +strand +28 : +37 CCAAAACAAG AC RSP01209 Mean Expected Number 0.008 -strand +37 : +28 CTTGTTTTGG AC RSP01482 Mean Expected Number 0.001 +strand +21 : +31 aAATTGACCAA Totally 5 motifs of 5 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G13310 |PROD: the same as GENE |complement(4310615..4311448) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.37 C - 0.16 1 aacacggtga attttattaa aatagtagga gaagaactaa tagctattct 51 tcttttcttc gattccatta caataataag ctaaaatgaa cacatacaca 101 cggattctaa aaccgatcaa gatttattcg aatataataa ataatataaa 151 atttggttac caaattacaa aaaaggtttt tttggggtat ggagctcttt 201 ATATAAGTCT TTCTCACTCC TTCTCTTTCC TTTGTGATTC ATATCCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.003 +strand +11 : +21 TTCTCaCTCCT AC RSP00653 Mean Expected Number 0.003 +strand +21 : +31 TTCTCTtTCCT Totally 2 motifs of 1 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G13350 |PROD: the same as GENE |complement(4335502..4337846) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.31 C - 0.15 1 aaattggtgt cttgactaaa aataatataa aggacataaa attaaagtcc 51 ccagataaaa gtttgtatga tttagggcaa aatctcagaa gataaaatca 101 ttcaaatttg tgtgaatttc gtttaatcct tatCCAATtt gtcccaattt 151 ataatcttat aagaaaaata aaaatctgaa atacggtggt ctcaattgct 201 CTTACCTTTA CCAAGACGGC CATAAGAAAA AAAAGATGTC GACCGATATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.009 +strand -130 : -124 TTTAGGG AC RSP00319 Mean Expected Number 0.002 +strand -115 : -107 CAGAAGATA AC RSP01757 Mean Expected Number 0.001 -strand -185 : -192 GTCAAGAC Totally 3 motifs of 3 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: prenylated rab acceptor (PRA1) family protein |LOCUS: AT3G13720 |PROD: the same as GENE |complement(4495026..4495963) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.39 C - 0.20 1 tgccactctc gctcggtgac accgtgtctc ttactttatc attagtcttt 51 caaattaact atatagtcct tcaacatgta gtaattcatc tacttataaa 101 ttgctgttac ccaaatctcg agtatctaaa acttatactt ttcagacatt 151 gaccaagtag tgaatcaaat cctcacgtta cactatattg taatcttttt 201 AAAACACGAT CTAATTAAAT TTTGTTTTAT TTCATAAACA TAGATTAGTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: URF 4-related |LOCUS: AT3G13740 |PROD: the same as GENE |4504278..4506243 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.26 C - 0.21 1 aaaggcccaa cccactaaaa tctattagca aaagcccaat ttcagtccat 51 atatgacgaa acgttaaccg tcagggtttt actacttggg agaagacgga 101 ggcctcttaa atcttaatgc taacagacga ataataatac gccacgtgta 151 taattgaacc gtcaccgcct tatcgttacc gctgtcataa acgaatagct 201 ATTTTCGTGC TCGGAAAAAG CAGAGTAAAG CTTTAAAAAA TGGTGATTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -52 : -60 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -53 : -60 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -51 : -60 tACACGTGGC AC RSP00524 Mean Expected Number 0.009 -strand -52 : -58 ACACGTG AC RSP00682 Mean Expected Number 0.002 +strand -60 : -51 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -51 : -60 TACACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -54 : -60 ACGTGGC AC RSP01255 Mean Expected Number 0.002 -strand -52 : -59 ACACGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: EIF4A1 |LOCUS: AT3G13920 |PROD: |complement(4592263..4594969) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +834 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.20 T - 0.25 C - 0.16 1 gtcacaaaat aaatgaagaa tttatgttcc taatttccca ctagatattt 51 gtttatttat ttttgccaaa atcaagttaa gacaatgagc taagtgttgg 101 aaaaccttgt ccgagccaaa agagtaaaaa gaaagggaat aaaggggtaa 151 aaccggaaat ccgaaaaaga aaaggagaag atttccaaag gagaaaaccc 201 TAAAGACGGA GTATATAAAC AAGGTAACGC GTTTTCTCTC AGCCTCTTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.005 -strand -75 : -85 TACtCTTTTGG AC RSP00279 Mean Expected Number 0.002 -strand +3 : -6 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -6 : +3 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand -7 : +3 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G14060 |PROD: the same as GENE |complement(4657053..4657608) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.10 T - 0.38 C - 0.24 1 ttgtgtcgtc ttctacagca agacatacaa tggcttactc ttttgtctaa 51 gcttatctac ttactggcct tcttcattat tcacttcacg gaaattacgt 101 aatatgtcat atttagtcat aaagtcacca cataacaaat ttcatggctc 151 ttactacctc tttatataag tatacaagtt tctcatcaat ctaactcctt 201 AAACCATCTT TCACTTTCTT CCTTCTAAAA AATTCTCTCG CGGGATTTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00366 Mean Expected Number 0.000 -strand -74 : -85 TGACTTTaTGAC AC RSP00454 Mean Expected Number 0.002 +strand -105 : -95 TACGTAAtATG AC RSP00572 Mean Expected Number 0.007 +strand -99 : -92 ATATGTCA AC RSP01030 Mean Expected Number 0.010 -strand -18 : -25 AGAAACTT AC RSP01233 Mean Expected Number 0.004 +strand -184 : -178 AGCAAGA Totally 5 motifs of 5 different REs have been found Description of REs found 351. Group RE: ERE /Group TF: TDBA12 /AC: RSP00366//OS: Nicotiana tabacum /GENE: CHN50/RE: ERE /TF: TDBA12 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: small nuclear ribonucleoprotein, putative / snRNP |LOCUS: AT3G14080 |PROD: the same as GENE |4667372..4669188 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +352 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.35 C - 0.13 1 ttttggtcca taaattaaaa tttattcgaa acagatattt tattagcttg 51 gaagattagt ctcatttatt taagaaacat tcagtcacaa taattattag 101 gaaatttaac attaaATTGG aaagtgctta aagtattaaa gtacaacgtc 151 ttatctatcg agttaagaaa tcgtggacat tgcttgaaaa taataaaaaa 201 GGGACAGTGG ACGGATTTGC TCGCTAGTTT TCTCTTCGAA TTTTCCACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.007 -strand +14 : +9 CCGTCC AC RSP01128 Mean Expected Number 0.008 +strand +5 : +20 CAGT-- +9 bp --TGCT Totally 2 motifs of 2 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oligouridylate-binding protein, putative |LOCUS: AT3G14100 |PROD: the same as GENE |4672926..4676754 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.12 T - 0.47 C - 0.21 1 agtttcacct gacttgttct ctgaaaatta gcaataaaat aaatcgtgct 51 ataaatagtt cacttgtgcc gcacggtccc tctcatcttc tacggacagc 101 ttctttctct ttcctctctg attttttttt tctctttcta cctttttctt 151 tttttatttt ctttcttttt tttttgttag tttttttttt tttctttctt 201 CATCTCGTGA ACGATATAGT ACCTGAACCC TAGCGGAGGA AAATCAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00018 Mean Expected Number 0.009 -strand +51 : +45 ATTTTTG AC RSP00444 Mean Expected Number 0.005 -strand -30 : -43 AAaAAAGAAAGAAA AC RSP01115 Mean Expected Number 0.009 +strand +45 : +51 CAAAAAT AC RSP01192 Mean Expected Number 0.001 -strand +33 : +24 CTAGGGTTCA AC RSP01296 Mean Expected Number 0.002 +strand -152 : -144 CTATAAATA AC RSP01480 Mean Expected Number 0.004 -strand -160 : -167 TATTTTAT Totally 6 motifs of 6 different REs have been found Description of REs found 17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: FLU |LOCUS: AT3G14110 |PROD: tetratricopeptide repeat (TPR)-containing protein |complement(4675712..4677665) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.24 C - 0.22 1 atcctccgct ccagtagaag actccgctga gacaaagaca gcgacgacga 51 cacagaacag tcgccaccag agtttaagca aaagctcctt aaacgctgcg 101 tttcatcttt gaagcttagt aaaaaagggt ttaactgtaa ttaaatagaa 151 aaacaggggc agtcttgtac aagtttcata aaaaacagac cagcggaaac 201 GAGTTTTAAG CTTCCCAAAG CGTTTGTTTT ATCCTCTCAG AGAGCTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.008 -strand +28 : +22 AACAAAC Totally 1 motifs of 1 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: (S)-2-hydroxy-acid oxidase, peroxisomal |LOCUS: AT3G14130 |PROD: the same as GENE |complement(4685653..4688316) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +457 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.25 T - 0.31 C - 0.21 1 aacttttcaa gaaacgcttc ggtctctgag actgagcatt ggtgtcagaa 51 gagaagaaat aaaagctccc gttggaaaat ggctctctga aatgatgatg 101 actcggtacg ccacgtcctc ATTGAgttga atagtcaacg tttactgtgg 151 gcaaagactc tagacgactt agagggttag caggtgtttt gtcgttttct 201 GTCTTGGTCT CCGACAGGAC CGACTCTGTT CTCGTGTTCT TTTTTCCCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.005 -strand -82 : -91 AGgACGTGGC AC RSP00075 Mean Expected Number 0.003 -strand -83 : -92 GgACGTGGCG AC RSP00680 Mean Expected Number 0.010 -strand +31 : +22 gAACAGAGTC AC RSP00819 Mean Expected Number 0.004 +strand -91 : -82 GCCACGTCcT AC RSP00821 Mean Expected Number 0.003 +strand -91 : -82 GCCACGTCCT AC RSP00949 Mean Expected Number 0.003 +strand -69 : -62 TAGTCAAC AC RSP01034 Mean Expected Number 0.010 -strand -85 : -91 ACGTGGC AC RSP01106 Mean Expected Number 0.000 +strand -93 : -83 ACGCCACGTCc Totally 8 motifs of 8 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RAP2.2 |LOCUS: AT3G14230 |PROD: AP2 domain-containing protein RAP2.2 (RAP2.2) |complement(4737153..4739143) |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.24 C - 0.21 1 atcaaaagaa tctacaccaa ttattgcatt ttttcattat ataataagca 51 ctaaactgta aaattatatt cagccaccca aaccatgaca aatcacctta 101 aaggcttaaa cacataacag ccattacgag tcacaggtaa gggtataata 151 gtaaagaatc aatctatata atatacgacc caccctttct cattctttct 201 GGAGAGTAAC ATCGAGACAA AGAAGAAAAA CTAAAAAAGA GAACCCCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.004 +strand +33 : +42 AAAAAAGAGA AC RSP00887 Mean Expected Number 0.005 +strand -195 : -187 AAGAATCTA AC RSP01060 Mean Expected Number 0.005 +strand -183 : -175 CAATTATTG AC RSP01060 Mean Expected Number 0.005 -strand -175 : -183 CAATAATTG AC RSP01077 Mean Expected Number 0.002 -strand -175 : -183 CAATAATTG Totally 5 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: subtilase family protein |LOCUS: AT3G14240 |PROD: the same as GENE |complement(4741480..4744124) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.33 C - 0.23 1 tgtgtttgtt cattcagttc attctaatgg atgatagcta tgtgagcaaa 51 taaatcccat atctaatcta ctattcaagt ttccaacact atcacaataa 101 tttagaaaag tatatagggg tatttacgta attaacaaaa taaaaaaaga 151 cagtgcctcc agctcacaaa aacacaactt cttctgcttc ctttctctgt 201 ACACACTAGG GAAACCACAG TTCTCTTCTA TCCTCTCTTT CTCCGCTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00416 Mean Expected Number 0.005 -strand -168 : -174 CATCCAT AC RSP00445 Mean Expected Number 0.007 +strand -58 : -49 AAAAAAGAcA AC RSP00861 Mean Expected Number 0.004 -strand +42 : +34 AGAAAGAGA AC RSP00862 Mean Expected Number 0.004 -strand -5 : -13 AGAAAGGAA Totally 4 motifs of 4 different REs have been found Description of REs found 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: diaminopimelate decarboxylase |LOCUS: AT3G14390 |PROD: the same as GENE |4806732..4809440 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.33 C - 0.20 1 ttttttgaat gaaccttagt tgtggttttt atttttgtta gctagaaact 51 tcagtgtttt ttttccgcca atggtagtgc tttgatgatg gtccggccca 101 attcatagaa ggccttgaaa atgggccaga CCAATtcaga gacccaacaa 151 gctcgactgt atacacaaaa ttcacaaaaa cagcttttga gaagttttct 201 TCTTCTTCAC CTTATTTTCG GGTATCAAAG CCACAAAACC CTGAGAATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01030 Mean Expected Number 0.006 +strand -157 : -150 AGAAACTT Totally 1 motifs of 1 different REs have been found Description of REs found 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G14430 |PROD: the same as GENE |complement(4824204..4824844) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.33 C - 0.16 1 aggaaacgtt tcttcagctg tggaagcgac gttattaaaa acggaactgt 51 ttttactata tcacggtgaa caacttgtcg tttctttgat cctctcttat 101 tgggctctga tgatatatat taacctttta aaaataacgg cccatatttt 151 cgtaagtttg taaaatgctt tattgataaa agcaaaaaga cttgcaactt 201 ATTATTCGTT AACGGAAAAA CTAACTCGCC GGTAAGATTT GGGAGAGAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00713 Mean Expected Number 0.008 -strand -181 : -187 CAGCTGA AC RSP00741 Mean Expected Number 0.003 -strand -72 : -83 AAAAGGTTAAtA Totally 2 motifs of 2 different REs have been found Description of REs found 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GGPS3 |LOCUS: AT3G14550 |PROD: geranylgeranyl pyrophosphate synthase |complement(4884573..4885989) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.16 1 atcattattt taaacttctt actttgttaa agtatgtaca tagattgttt 51 actttttcat cccataattg aaaaatattc atactatatt gtttgcagaa 101 attACAATtc aaaataacag tgaagctgaa gatgttgacc ctcattgctt 151 ccaactacaa gaaacctatt aagaagaaag aaaaacctat taagagctcc 201 ACATTTATAA AGTTCTATTA GAGACGGTGG ATAGGCCATG GCTACTACTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 -strand -144 : -155 AAAAAGTAAAcA AC RSP00093 Mean Expected Number 0.010 -strand +33 : +27 TATCCAC AC RSP00559 Mean Expected Number 0.007 -strand -95 : -105 TGTAATTTCtG AC RSP00628 Mean Expected Number 0.008 -strand -152 : -159 AACAATCT AC RSP00860 Mean Expected Number 0.004 +strand -26 : -18 AGAAAGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G14595 |PROD: the same as GENE |4908957..4910483 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.24 C - 0.20 1 aaaaatttca tttccgtcgg tgtttgtttt tatatttagg aaaaaaaaag 51 agaagcgaat gtttcccctg ggattacgca aatatcaaag attattatag 101 gaaaatctgg ttgaggaaag ctgactaacc accacataaa aagccacgtg 151 gcacatgcac ttcccctaga aatacgaaac tttaataaga agcatccagc 201 AAAACCGAAA TCTTGGTTCA CCACCGTCTC CAGATCAAAG AAAACAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.001 -strand -175 : -182 CAAACACC AC RSP00040 Mean Expected Number 0.006 -strand -173 : -179 AACAAAC AC RSP00063 Mean Expected Number 0.001 +strand -58 : -49 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -49 : -58 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -58 : -49 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -49 : -58 GCCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -57 : -48 CCACGTGGCa AC RSP00153 Mean Expected Number 0.001 -strand -50 : -59 CCACGTGGCt AC RSP00175 Mean Expected Number 0.001 +strand -56 : -49 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -51 : -58 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -58 : -49 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -49 : -58 GcCACGTGGC AC RSP00445 Mean Expected Number 0.004 +strand -157 : -148 AAAAAAGAGA AC RSP00682 Mean Expected Number 0.002 +strand -58 : -49 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -49 : -58 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -57 : -50 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -50 : -57 CCACGTGG AC RSP01034 Mean Expected Number 0.005 +strand -55 : -49 ACGTGGC AC RSP01034 Mean Expected Number 0.005 -strand -52 : -58 ACGTGGC AC RSP01221 Mean Expected Number 0.005 +strand -75 : -68 TAACCACC AC RSP01726 Mean Expected Number 0.000 -strand -48 : -59 TGCCACGTGGcT Totally 21 motifs of 13 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L18A (RPL18aC) |LOCUS: AT3G14600 |PROD: the same as GENE |4910704..4912180 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.30 C - 0.22 1 gactcataaa aacacttgag ctcatttgac cggcgacagt aaaaaagtaa 51 atttaattta cccgatttac ccgctgcaaa tatttttgta acgccaatgt 101 aatgagaaga ataattaaag gcccaagtag gaaaaagaaa agcccacaga 151 gacggcccct agggtttgtc ctttagagaa acctctttta tagttttctc 201 ATGAGCGCCA CCGTTTAGCT CTTTTCTCTC TGTTTTGCTC TTGGCTGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.003 +strand -93 : -82 AGAATaATTAAA Totally 1 motifs of 1 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: malate dehydrogenase (NAD), mitochondrial |LOCUS: AT3G15020 |PROD: the same as GENE |5056083..5058255 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.32 C - 0.18 1 aatgagttgg gttataaatt agtaattaac aatggcatgt tacaaattag 51 actaacaaca ttgtagcaaa tcaagccgat tatattttat ttaattagta 101 aaagattaac acaacaaaag aaacctgaaa atagttaagt ggagggcccc 151 atgaccacta acaaaaacat ataagctctt ttcgttttgt tactctctcc 201 ATTGAATTCT GTCTTGATCA CTTTCGATTC TCTCAAAAAA TCCCATAACT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: exonuclease family protein |LOCUS: AT3G15080 |PROD: the same as GENE |5074272..5076528 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.34 C - 0.17 1 tatcttatct tagcttttat aagctatgaa acaatgattt aatacatgtg 51 tatattttat catataccaa agtataatca aagcaaaaat cataacgtgg 101 tgaaaatcgt attattatta ttATTGGatg ctagagaaac ggcagcgttt 151 tgggaggtct taattcttaa accttactct tgtgattctc gagccgcttc 201 AAGGAGCTTC GTGCTTGTCA ACAAATTTTC CAAGCGCCCG CTGAACTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 -strand -190 : -198 AAGATAAGA AC RSP00447 Mean Expected Number 0.005 +strand -124 : -115 AtCAAAGCAA AC RSP00734 Mean Expected Number 0.003 -strand -49 : -56 CAAAACGC AC RSP01053 Mean Expected Number 0.003 -strand -192 : -200 GATAAGATA Totally 4 motifs of 4 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxidoreductase |LOCUS: AT3G15090 |PROD: the same as GENE |5076756..5079123 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.26 C - 0.22 1 gttttgtcca attacggttg aacattgtag aaaccaaaac ctctacttct 51 cacatcacat atactgtact gatcaaatcg gttcggtttg gagtaaaccg 101 gttaattaca taaaactcta gaggttgcat gtacagtcaa gtaaacaaag 151 ccgctctgcg gacgcaaatg ctgccacgtc ttcaatttcc gtttctgtgt 201 AAACAAGAAA ACCTAAAAAA CAGAAGCAAG CAGATTCTCG CATCAACGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.002 +strand -114 : -107 TTTGGAGT AC RSP00819 Mean Expected Number 0.002 +strand -28 : -19 GCCACGTCTT AC RSP00821 Mean Expected Number 0.002 +strand -28 : -19 GCCACGTCtT AC RSP01034 Mean Expected Number 0.008 -strand -22 : -28 ACGTGGC AC RSP01094 Mean Expected Number 0.002 -strand -187 : -198 TAATTGGAcAAA Totally 5 motifs of 5 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: chloroplast 30S ribosomal protein S20, putative |LOCUS: AT3G15190 |PROD: the same as GENE |5116154..5117622 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.22 T - 0.26 C - 0.18 1 ctttaatttt tagtgttgaa cttaatcaaa gaaaaaaagg aataacgagt 51 ttggtccgtt tctcatcgtt tgccattagc ccacgcggga gatccaaaac 101 actgggctaa actggagtta agacgataaa ccaagggtaa tatagtaatt 151 gcgtttccag acatcatctc ttcctttatg gataacactg gttcgaaatg 201 GAGCCATTAC TCTTTACTAA CAGAGGGAGA AAGAGCAGAG AAGAGAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.006 -strand +49 : +39 TTCTCTCTtCT AC RSP01075 Mean Expected Number 0.002 -strand -112 : -121 CCCGCGTGGg AC RSP01208 Mean Expected Number 0.001 -strand -96 : -107 CCAGTGTTTTGG AC RSP01526 Mean Expected Number 0.000 -strand -144 : -155 gGACCAAACTCG Totally 4 motifs of 4 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY 1374. Group RE: Box II /AC: RSP01526//OS: Pisum sativum /GENE: PsCHS1/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15351 |PROD: the same as GENE |5176066..5177655 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +667 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.33 C - 0.22 1 caaattatta aataggtata tttttaaata ccaaataaat aaaatttaca 51 ttttcttgtg ctacgatacg acggcgggaa cgatcgcacc tttcaatggt 101 atgattagtg ggccgggcct tttatagccc aaatacctag cccataactc 151 aactcggggg tttaatgtaa tttatattgt taataaactt cgtccctctc 201 ATTGCGTCAC CGAGATTCTC ACCGGACCTC TGCTTATTAA ATCTTCGTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.007 +strand +9 : +15 ACCGAGA AC RSP00970 Mean Expected Number 0.001 -strand +10 : +2 GTGACGCAA AC RSP01458 Mean Expected Number 0.002 -strand -172 : -184 ATTTAAAAATaTA AC RSP01497 Mean Expected Number 0.002 -strand -126 : -135 GCCGTCGtAT AC RSP01735 Mean Expected Number 0.002 +strand +13 : +21 AGATTCTCA Totally 5 motifs of 5 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 893. Group TF: STF1; STF2; STGA1 /AC: RSP00970//OS: Glycine max /GENE: Auxin-regulated genes/RE: CRE (G/A) /TF: STF1; STF2; STGA1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15357 |PROD: the same as GENE |5187123..5187717 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.32 C - 0.24 1 ggtttggatt ttgactttta agctttatta tccctcctaa tcaagacaaa 51 agatgtgaac cagatttact ttaccgacgt gttgttgtac tttcaactga 101 aaatctaaac tacagttctg aaaaagagat acgtaaatgt acacgtgtct 151 atccacgtgt caactcctac taaaaaccct aaacccttcc ctctctttat 201 ATTAGCCGTC CTAAACTCTT TATCAGTCCC AGTACACTGC GATCAAAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.008 +strand -49 : -40 TCCACGTgTC AC RSP00068 Mean Expected Number 0.006 -strand -40 : -49 GACACGTgGA AC RSP00188 Mean Expected Number 0.004 +strand -49 : -40 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -40 : -49 GACACGTGGa AC RSP00279 Mean Expected Number 0.003 -strand -19 : -27 TTAGGGTTT AC RSP00340 Mean Expected Number 0.005 +strand -61 : -52 TaCACGTGTC AC RSP00340 Mean Expected Number 0.005 +strand -49 : -40 TCCACGTGTC AC RSP00369 Mean Expected Number 0.003 +strand -27 : -19 AAACCCTAA AC RSP00445 Mean Expected Number 0.007 +strand -81 : -72 gAAAAAGAGA AC RSP00524 Mean Expected Number 0.008 +strand -60 : -54 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -41 : -47 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -53 : -59 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -40 : -49 GaCACGTGGA AC RSP01035 Mean Expected Number 0.008 +strand -58 : -52 ACGTGTC AC RSP01035 Mean Expected Number 0.008 +strand -46 : -40 ACGTGTC AC RSP01086 Mean Expected Number 0.006 -strand -64 : -73 TTTACGTaTC AC RSP01255 Mean Expected Number 0.002 -strand -41 : -48 ACACGTGG AC RSP01256 Mean Expected Number 0.002 +strand -60 : -53 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -53 : -60 ACACGTGT AC RSP01274 Mean Expected Number 0.005 +strand -49 : -40 TCCACGTgTC AC RSP01303 Mean Expected Number 0.007 +strand -28 : -19 aAAACCCTAA AC RSP01703 Mean Expected Number 0.001 +strand -127 : -118 CCGACGTGTT AC RSP01722 Mean Expected Number 0.000 +strand -50 : -39 ATCCACGTGTCa Totally 23 motifs of 18 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATHM4 |LOCUS: AT3G15360 |PROD: thioredoxin M-type 4, chloroplast (TRX-M4) |5188395..5189704 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.26 C - 0.24 1 gcctaaccga attggtgcgg tgctgcctaa ccgaaatcag atgtgctgcc 51 taaccgaaat caaatttgat agtcggtcta ctaaaacaat tgacggttta 101 caggagtcct ctaaacgttg tcgttatctc aaaggaaaga atgacgtggc 151 gaggataaaa tcgcattcgc ctctgtgtgt gttctcaagt cattcaaatt 201 GTCACCCGTA TCTGCCAAAA ACCCTCTAAC CACTCAAAAA AATATCTCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -59 : -51 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -59 : -52 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -52 : -59 CCACGTCA AC RSP00248 Mean Expected Number 0.004 -strand -51 : -60 GCCACGTCAt AC RSP00819 Mean Expected Number 0.003 -strand -51 : -60 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 -strand -51 : -60 GCCACGTCaT AC RSP01034 Mean Expected Number 0.008 +strand -57 : -51 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -49 : -59 tCGCCACGTCA AC RSP01275 Mean Expected Number 0.003 -strand -51 : -60 gCCACGTCAT Totally 9 motifs of 9 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15395 |PROD: the same as GENE |5200646..5201521 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +375 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.36 C - 0.14 1 atcgaagagc caaattgcaa aataaattta acattttttt atcggatgtt 51 acaaaaataa attagatatc cacataacat gtgcgaatgt tattgataat 101 tttgtattaa tcaacaaaaa atacatgtcg ggaaagaaaa aaaagtgttt 151 catttattgt tatgaaccct ttataagtta tgtattacca aaatagcact 201 CATTGTTTTA AAATTACAAA TTAGTCCGTT CTTTTATTCC CGTACTCGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01205 Mean Expected Number 0.006 +strand -33 : -24 CCTTTATAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: brix domain-containing protein |LOCUS: AT3G15460 |PROD: the same as GENE |complement(5213343..5216268) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.21 T - 0.35 C - 0.14 1 aacagagaga tatgtttatt gattggaaat agaaagagag aaaccaaaaa 51 aggaaaattc ttttgcaatg tagtttcttt tgcgtgtcat taaggcccat 101 gtaagcttga tccggcccAT TGAaattcct tgtataaaag tgagaaacgt 151 tgtcgttttc gttgtgacat ttttagttaa agcagcttgt ctctttcttt 201 AGGTTGTTGA GTTTTGTACT AAAACCCTAA ATCAGAGAAT TTAGCGTTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -43 : -56 AAACGACAaCGTTT AC RSP00260 Mean Expected Number 0.006 -strand +31 : +25 TTTAGGG AC RSP00279 Mean Expected Number 0.001 -strand +30 : +22 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +22 : +30 AAACCCTAA AC RSP00861 Mean Expected Number 0.002 +strand -170 : -162 AGAAAGAGA AC RSP00861 Mean Expected Number 0.001 -strand -3 : -11 AGAAAGAGA AC RSP00961 Mean Expected Number 0.004 -strand -134 : -141 TGCAAAAG AC RSP00297 Mean Expected Number 0.000 +strand -107 : +29 GGCCCA-- ** bp --ACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -87 : +29 GGCCCA-- ** bp --ACCCTAA AC RSP01033 Mean Expected Number 0.003 -strand -148 : -157 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.001 -strand -148 : -157 CCTTTTTTGG AC RSP01303 Mean Expected Number 0.001 +strand +21 : +30 aAAACCCTAA AC RSP01641 Mean Expected Number 0.005 +strand -16 : -7 gCTTGTCTCT Totally 13 motifs of 11 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15480 |PROD: the same as GENE |complement(5226255..5227794) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.16 1 attatacagc agtcgacaga tcagccggtt aaatctaaac cattcaatgt 51 gtcttcttcg ttaatagacg gtgactttta actaatccac tttttaaaac 101 gtttttaatt tttgcacatt ttcacactta atcttcttaa atgttttctt 151 aaacagaatt aaaaatattt aaatcattta aattcgaaaa ttgggtcaat 201 GTCTCTTTGA CTTCATCGTC GATTAAGGGA GAAAGAGAGA GAGAGTGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.006 -strand -32 : -43 AATATTTTTAaT AC RSP00861 Mean Expected Number 0.001 +strand +30 : +38 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +34 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +36 : +44 AGAGAGAGA AC RSP01640 Mean Expected Number 0.005 +strand -4 : +6 CaATGTCTCT Totally 5 motifs of 4 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15530 |PROD: the same as GENE |complement(5252882..5254569) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +369 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.31 C - 0.18 1 atcttaaata aatttaaaag aaaaaggtta gctaatgatt ttctgttagc 51 aacctccaaa ttaaaaatct agcgacttta cgggtttttt aattcagaaa 101 ccagtggttt gaaaaatgca gaaaccgaca agcatagagt gaaaaagaaa 151 gcgcgtgaaa aaattgtaag accaaaagtt gcaaaaaaat atccctttcc 201 ATAATTCCTT CCTTTGCCCC ATTTTTATTT TCTTCTTCAT CCATAATAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.006 -strand -153 : -160 TAACAGAA AC RSP00646 Mean Expected Number 0.000 -strand +32 : +19 GAAAaTAAAAATGG AC RSP01559 Mean Expected Number 0.006 -strand -45 : -50 ACGCGC Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: phototropic-responsive NPH3 family protein |LOCUS: AT3G15570 |PROD: the same as GENE |complement(5270171..5271860) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.37 C - 0.14 1 taattctatc tgaacgaaat attttttttt caattttaaa tcagaaaaaa 51 tgttacgatt tgattgtcgg tcactattag gcagctacaa tgtatcaata 101 aatattatgt ttaTCAATtt ttcacgaaaa tgaaatctaa ctaattcgtt 151 cgttagtttc taaaaatcgc aaaacttttt gaaattctgt ggaagtcatg 201 ATTATGTTCT GTGATGAGCT TTTCGAGCAA AAAACCATAA AACCAAACTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00857 Mean Expected Number 0.003 +strand -195 : -186 CtATCTGAAC AC RSP00987 Mean Expected Number 0.003 +strand -119 : -110 CAGCTACaAT AC RSP01195 Mean Expected Number 0.002 -strand -147 : -159 AAcATTTTTTCTG Totally 3 motifs of 3 different REs have been found Description of REs found 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: cytochrome c oxidase family protein |LOCUS: AT3G15640 |PROD: the same as GENE |5299117..5301752 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.33 C - 0.21 1 tggactgagg aaaaaataat ccttacatgt ccatttcatc ataatttcat 51 tttgtagtat atgcatcatt gtatcattat ttccacttgt atcactaatt 101 ccacttgaaa tgtcacACAA Tatagggtcc cctgacacgt gtgtactatg 151 tagtttcaca cgtaccggtt aatatcgaga ttccaagtaa aaaagtgacc 201 AATTCTAAAT TAAGAATCTC TCTAATCTCT TCCCAAAGAA GAATCATCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 -strand -58 : -67 CaCACGTGTC AC RSP00524 Mean Expected Number 0.007 +strand -66 : -60 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -59 : -65 ACACGTG AC RSP00872 Mean Expected Number 0.000 -strand -82 : -91 TGTGTGACAT AC RSP00913 Mean Expected Number 0.004 -strand -161 : -170 GATGAAATGG AC RSP00914 Mean Expected Number 0.008 -strand -161 : -170 GATGAAATGG AC RSP01035 Mean Expected Number 0.007 -strand -61 : -67 ACGTGTC AC RSP01068 Mean Expected Number 0.010 +strand -70 : -62 CCTGACACG AC RSP01152 Mean Expected Number 0.001 +strand -44 : -35 CACACGTaCC AC RSP01152 Mean Expected Number 0.000 -strand -58 : -67 CACACGTGtC AC RSP01256 Mean Expected Number 0.002 +strand -66 : -59 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -59 : -66 ACACGTGT AC RSP01751 Mean Expected Number 0.001 +strand -119 : -111 TCCACTTGT Totally 13 motifs of 10 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: zinc finger (Ran-binding) family protein |LOCUS: AT3G15680 |PROD: the same as GENE |5315008..5316471 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +436 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.14 T - 0.44 C - 0.18 1 ttataggctt gggaatctca gccggaattt tcacttagtt tattttaaat 51 attctcgttt tttttgttgc tcttcttttg cgaaagttta caatattgtg 101 gtgaagaaaa cgaaaaagta attattatta ttttttttct ttattttttt 151 tcaaacgagc caccagttgt tcttgtgtgt tctatttaag cccatcctct 201 TCGCATCACT CTTTCAAAGC CTCGTGTCTT GATTTCTTTC ACCAAACTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01527 Mean Expected Number 0.000 +strand +39 : +50 TCAcCAAACTCA AC RSP01600 Mean Expected Number 0.007 +strand +12 : +19 TTTCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15810 |PROD: the same as GENE |complement(5347833..5349295) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.32 C - 0.12 1 aaacagatta aactaacatt tttaagttat agcatgttat ttaattattt 51 atgcatgtga ctttggtatt attagccaat aggaaataac aataatatat 101 gttacgactt ttttgaagca gacttaaaga tattaattca ttacatacgc 151 gtcaagcgtg tgtacgtata tatcaaccac atataaatag agagacaaag 201 GAAGGAAGAG AAGAGTGTCC ATATCATAGA TTAAAAATCA TTCGTTAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00727 Mean Expected Number 0.005 -strand -44 : -50 GCTTGAC AC RSP01470 Mean Expected Number 0.006 +strand -152 : -143 TtATGCATGT AC RSP01640 Mean Expected Number 0.007 -strand -1 : -10 CTtTGTCTCT Totally 3 motifs of 3 different REs have been found Description of REs found 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G15820 |PROD: the same as GENE |5351078..5353735 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.30 C - 0.18 1 gtaagtatct gtaatacacg aatcattaat acataacacg aataatgcat 51 tactatagtt ttgagaatct cattctcata cttctgtctc tcttgttgtc 101 gaagaatatc acacttaaca tataaaaaga acaacatgtc agtacacaaa 151 ggtaaagccc accaaagaga gaaaagaaaa caagacttaa ctataacaat 201 AAATTTAATG TCGCTCTCAA AACTCATTTT TTTCATATGA ATTTTCTAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01735 Mean Expected Number 0.001 -strand -131 : -139 AGATTCTCA Totally 1 motifs of 1 different REs have been found Description of REs found 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: FAD5 |LOCUS: AT3G15850 |PROD: fatty acid desaturase family protein |5359016..5361192 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.29 C - 0.25 1 gggttttaga taactgcccc aaattggcaa tccaaatccc taaaaccatc 51 ttatcctctc tttccaaatc tagccgcaat gtagtcccgt gaaccacaaa 101 aaagatgaga tcttgcacgt ctctgtcatc acaactagta ctactaATTG 151 Tgaagcatac aaaaaagacc gacccttatt tatacacgca cacatattaa 201 CATATTTATA CTACTAGTAT ATAAGTTAAG GGTTTAAGCC TCTTCTCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.008 +strand -87 : -78 TgCACGTCTC AC RSP00426 Mean Expected Number 0.001 -strand -75 : -85 ACaGAGACGTG AC RSP00597 Mean Expected Number 0.004 -strand +1 : -11 GTTAATaTGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 407. Group RE: DRE1/ABRE1 /AC: RSP00426//OS: Zea mays /GENE: rab17/RE: DRE1/ABRE1 /TF: unknown 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G15900 |PROD: the same as GENE |complement(5376257..5377089) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.36 C - 0.15 1 aacctaagta ttatttggac aaattatata atatagatat taaacaggca 51 aataaaaaat aaactaagat tttttcaggt tttttcctta cgtatttgtt 101 cctcagaatc tttagtttgt tatgaaagtg agtgaaaacg caaacgtggg 151 tttgtgggga gcgtttgcgt tctaaagttt caagaatcga cgcaaaacgt 201 GAGATGTGTT TTTGGTAAGC GTCGTGTCTC TCTCTCTTAT CCTCTGTTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.008 -strand -5 : -11 TTTGCGT AC RSP00404 Mean Expected Number 0.008 -strand -57 : -63 TTTGCGT AC RSP00864 Mean Expected Number 0.001 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +35 : +27 AGAGAGAGA AC RSP00892 Mean Expected Number 0.005 -strand -158 : -166 TTAATATCT AC RSP01031 Mean Expected Number 0.009 +strand -96 : -89 AGAATCTT AC RSP01641 Mean Expected Number 0.006 +strand +22 : +31 TCgTGTCTCT Totally 7 motifs of 5 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L37 (RPL37C) |LOCUS: AT3G16080 |PROD: the same as GENE |5454824..5455933 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.27 C - 0.21 1 aggccgaagt aagttaacga tttgcaacca ggcccattta tgtcacatat 51 aatggcccat aaattcactt caatcctaaa aataaaaatc taaccttcat 101 aatgggcaaa ataaattacg atcgtattca ggcccacaaa tacaaacaaa 151 ggcccatgct tttaagtaca accctagaat tagaaaacgt tgatataaat 201 AAGCTGTCAT AAAATTGAGC TTCTTCTTCT CTGAAGCCGT ATCCTAGGGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.006 -strand +9 : +2 TGACAGCT AC RSP00790 Mean Expected Number 0.001 -strand -133 : -143 GTGAATTTATG AC RSP00888 Mean Expected Number 0.010 +strand -117 : -109 AAAAATCTA AC RSP01632 Mean Expected Number 0.001 -strand -35 : -45 CTTAAAAGCAT AC RSP01711 Mean Expected Number 0.007 +strand -27 : -18 CTAGAATTAG Totally 5 motifs of 5 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Ras-related GTP-binding family protein |LOCUS: AT3G16100 |PROD: the same as GENE |5459178..5460783 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.36 C - 0.13 1 attttttaat ataataaatc ttaattacat aagccagaga atattcttgt 51 tgtattaatg aagatgatgc ttgcaactgt ataagattac tgataacaat 101 aatataataa taaaaataaa attaagttgg tggggagggg tagtttagga 151 aaactgtaat tgcagtattg ttaattggtt gtctccgtaa ctttttaacc 201 AATCGTTTAG TATTTTTGTA AATCGCCTCT CCACCTTGCC CCTGGAGAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00559 Mean Expected Number 0.007 +strand -46 : -36 TGTAATTgCAG AC RSP00601 Mean Expected Number 0.000 -strand -66 : -74 CCCCACCAA Totally 2 motifs of 2 different REs have been found Description of REs found 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: dynein light chain, putative |LOCUS: AT3G16120 |PROD: the same as GENE |5464775..5465537 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +266 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.28 C - 0.24 1 agaatttgat atatatgagc ctctccatcg ttatcctatc aatcagaggt 51 ctgaaaacga cgtggacaca cgtcagacac atcattccta ctactctgat 101 gactcatcag ctcaccctat tttcttactg ctcttatcgt agttatcaaa 151 ctcacaacat agccgatcca tttatgactt cagacttact atgtactctc 201 TTCAAAAATT GTGACCAAAA CAAAAGTTAA AGATAAGAAG AACGAAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.003 +strand -134 : -127 CACACGTC AC RSP00143 Mean Expected Number 0.003 -strand -127 : -136 GACGtGTGTC AC RSP00227 Mean Expected Number 0.002 +strand +30 : +38 AAGATAAGA AC RSP00664 Mean Expected Number 0.002 -strand -94 : -102 ATGAGTCAT AC RSP00986 Mean Expected Number 0.000 -strand -136 : -143 CCACGTCG AC RSP01258 Mean Expected Number 0.005 -strand -126 : -133 TGACGTGT AC RSP01275 Mean Expected Number 0.002 -strand -135 : -144 TCCACGTCgT AC RSP01278 Mean Expected Number 0.003 +strand -102 : -94 ATGACTCAT AC RSP01278 Mean Expected Number 0.003 -strand -94 : -102 ATGAGTCAT AC RSP01575 Mean Expected Number 0.000 +strand -137 : -124 GGACACAcGTCAGA AC RSP01723 Mean Expected Number 0.000 -strand -134 : -145 GTCCACGTCgTT AC RSP01734 Mean Expected Number 0.005 -strand -135 : -141 TCCACGT Totally 12 motifs of 11 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 1404. Group RE: ICEr1 /AC: RSP01575//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr1 /TF: unknown 1531. Group TF: STF1/HY5 /AC: RSP01723//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: C/G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: photosystem I reaction center subunit VI |LOCUS: AT3G16140 |PROD: the same as GENE |complement(5468515..5469482) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.23 C - 0.22 1 ttttccaaaa caaaatcata aagaaggggc cctataacaa aataagaaga 51 cacgaaatat tttagttaaa accttgagat aaccttatcc tactagattc 101 cacgtggcat tttccaagtg gcgtaagaaa atccccggga ggaaatcagt 151 tgccacgtgt cagaagaaga tcaaaactcg actcattgtg accaaaggct 201 ATTATTTCCT ACACAAAATT CCCACTCACC ACACACAACA AAAGAATAGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -41 : -49 ACACGTGGC AC RSP00024 Mean Expected Number 0.005 +strand -1 : +7 TATTATTT AC RSP00056 Mean Expected Number 0.003 +strand -49 : -40 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -102 : -93 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -49 : -40 GCCACGTGtC AC RSP00073 Mean Expected Number 0.001 -strand -40 : -49 GaCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -93 : -102 GCCACGTGGa AC RSP00153 Mean Expected Number 0.002 +strand -101 : -92 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -100 : -93 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -42 : -49 CACGTGGC AC RSP00189 Mean Expected Number 0.003 +strand -102 : -93 TCCACGTgGC AC RSP00204 Mean Expected Number 0.001 -strand -40 : -49 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -39 : -50 TGACACGTGGCA AC RSP00340 Mean Expected Number 0.003 +strand -102 : -93 TCCACGTGgC AC RSP00340 Mean Expected Number 0.003 +strand -49 : -40 gCCACGTGTC AC RSP00522 Mean Expected Number 0.008 -strand -80 : -86 CCACTTG AC RSP00524 Mean Expected Number 0.006 -strand -41 : -47 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -93 : -102 GCCACGTGGA AC RSP00683 Mean Expected Number 0.003 -strand -93 : -102 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -101 : -94 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -94 : -101 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -102 : -93 TCCACGTGGC AC RSP00936 Mean Expected Number 0.000 +strand -50 : -39 TGCCACGTGTCA AC RSP00938 Mean Expected Number 0.000 -strand -92 : -103 TGCCACGTGGAA AC RSP01034 Mean Expected Number 0.004 +strand -99 : -93 ACGTGGC AC RSP01034 Mean Expected Number 0.006 -strand -43 : -49 ACGTGGC AC RSP01035 Mean Expected Number 0.006 +strand -46 : -40 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -41 : -48 ACACGTGG AC RSP01593 Mean Expected Number 0.000 +strand -102 : -91 TcCACGTGGCAT AC RSP01734 Mean Expected Number 0.009 +strand -102 : -96 TCCACGT Totally 30 motifs of 23 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: L-asparaginase |LOCUS: AT3G16150 |PROD: the same as GENE |5471743..5473282 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.14 T - 0.27 C - 0.14 1 tgaaaagtaa agaaaaatat acggaaagta tattcttcct tcatatgaaa 51 aaaaaaacta aacaaaacaa ataaaatcag atggggtaat taaaaaatgt 101 ttttaaaaat taagaggtaa aTCAATaaat aagaaaatgt gggtctctcc 151 ttgctcgtaa aaggcctata taatgaccta atgcgactct tctttcttcc 201 ATCATTCTCG GTTTAACTGT GAAACACATA AATAAAACAA AGAGAAAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.002 -strand +12 : +6 ACCGAGA AC RSP00439 Mean Expected Number 0.009 +strand -171 : -164 ATATTCTT AC RSP00858 Mean Expected Number 0.009 +strand -116 : -109 GGTAATTA AC RSP00861 Mean Expected Number 0.006 +strand +43 : +51 AGAAAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: acyl-activating enzyme 13 (AAE13) |LOCUS: AT3G16170 |PROD: the same as GENE |5476080..5480308 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +416 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.23 C - 0.28 1 acgccacgtg ccaaactctc cactgaatca aagtcgccaa acgcttcagt 51 cgctatttca tgatcgacac gaaggctctc ttttggcgat tgcaaccacc 101 acctaagaag aacggctacg taatttgact gtacgacttg cgaaaaaagt 151 cgaaaccttt taacgaacca gacctaaaaa tgaccgctac gacaacatta 201 AAGAGTTTCA ACTACTTGTC TTTAATTAAC CATCGACTCA ACCACAACTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.003 +strand -198 : -189 GCCACGTGcC AC RSP00073 Mean Expected Number 0.003 -strand -189 : -198 GgCACGTGGC AC RSP00075 Mean Expected Number 0.009 -strand -190 : -199 GcACGTGGCG AC RSP00175 Mean Expected Number 0.002 -strand -191 : -198 CACGTGGC AC RSP00183 Mean Expected Number 0.000 +strand -198 : -189 GCCACGTGCC AC RSP00204 Mean Expected Number 0.002 -strand -189 : -198 GgCACGTGGC AC RSP00488 Mean Expected Number 0.003 -strand -78 : -87 tTACGTAGCC AC SP017556 Mean Expected Number 0.006 +strand +30 : +37 CCATCGAC Totally 8 motifs of 7 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 177. Group TF: G-box binding TF /AC: RSP00183//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 10 /TF: G-box binding TF 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: thioesterase family protein |LOCUS: AT3G16175 |PROD: the same as GENE |5480470..5482048 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.30 C - 0.14 1 tgagaagtaa atctttgtta tatactattt ctttgtttag tgtgaagaac 51 aacaaaattg tatagtgtga aagaaggaaa gttgaccata gtctttgact 101 ctttgatgct aaatcagtaa tcattccaaa agggtataat ggtaattaac 151 tatgatgatc cgataaccat atattcccac acgcaagttt gttttgtaac 201 GAGAACGTAA AAAGACGAAG AAGAAGGGAC AGTATGGTAG ATCCAACGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -65 : -75 TACcCTTTTGG Totally 1 motifs of 1 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: isochorismatase hydrolase family protein |LOCUS: AT3G16190 |PROD: the same as GENE |complement(5489707..5491254) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.31 C - 0.18 1 agcaggttta aaatttaaat taggcaacgt ttgttttgtt ccttcagtac 51 cagtcggttt agatatatct tggattcttg gacaacaaaa agaaacaaaa 101 tcggcgagga tattattttc tttATTGTtg ggccgaatga gaagacagat 151 gggccgtgat tccgccaaag gagccacacc aatctaataa tttacaattc 201 AAGCATCACT ATGCTCGAAA ATCTCTCTTT GTTCGCTTTG TGGGGAACGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.008 +strand -5 : +3 AATTCAAG AC RSP01017 Mean Expected Number 0.008 +strand -110 : -103 AGAAACAA Totally 2 motifs of 2 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: metallo-beta-lactamase family protein |LOCUS: AT3G16260 |PROD: the same as GENE |5509418..5513210 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.27 C - 0.18 1 cgtaagtaat gtaagagttg tgaataataa ggtgtagttg acatttgatg 51 ggccggaaat gtaatacaaa ggcccatggg ctaaattgac aatttcatta 101 aaaaaatcga tcctcgaagg agaagactct gagaaaaaaa aaacgggaag 151 aagcttgagc ttgtcactca ctagcttgag gaaaaatgtt aacttcatca 201 ATGCCTCAAA ACCTAAGCCT TTTCGGATTT TCTCCTCTCA AGTCTTCTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 -strand -104 : -114 TGAAATTGTcA AC RSP00254 Mean Expected Number 0.007 +strand +18 : +24 CCTTTTC Totally 2 motifs of 2 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G16310 |PROD: the same as GENE |complement(5526424..5528606) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +494 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.36 C - 0.18 1 atttatgtat tgttgaccaa aaaaataata acacaaatta gcttacaagt 51 tacaaccatt taattttaca ccatgttgga ttgagaattt tgatggttat 101 tcctttatat gttgaagaaa ccttctgggc caacaacttt ccaaataggc 151 ccaattcaaa cccattgtac aaatgcaagg ctactttcgt catttttcgt 201 AAGGCGCTTG AATTTTGCGT TTTCAGAATC TTGGTTTCTA GGGTTTCACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00597 Mean Expected Number 0.001 -strand -159 : -170 GcTAATTTGTGT AC RSP01015 Mean Expected Number 0.006 +strand -31 : -22 CAAATGcAAG AC RSP01031 Mean Expected Number 0.009 +strand +25 : +32 AGAATCTT AC RSP01046 Mean Expected Number 0.001 -strand -118 : -126 CAATCCAAC AC RSP01078 Mean Expected Number 0.001 -strand -101 : -112 ATAACCATCaAA AC RSP01602 Mean Expected Number 0.003 -strand -115 : -122 TCTCAATC Totally 6 motifs of 6 different REs have been found Description of REs found 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: jacalin lectin family protein |LOCUS: AT3G16430 |PROD: the same as GENE |5581669..5583193 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +167 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.33 C - 0.16 1 cgtttcattg gccaacacca atataaagac gattagttga gaagctgtgg 51 aagtaaaaaa ggagtatatg aatatttgaa catgtatttc ttccggtaat 101 gttttaaata tgcctcgtgg atcacgaaat aatagattat tatttctgct 151 agtacgatca atgatcctat atgcggatat atggttatat gcaagaagtc 201 AATATAAACA CCTATGATTC ACTTAAATCG ATCACAATCT ACTCACTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.002 -strand -35 : -45 GATCATtGATC Totally 1 motifs of 1 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein phosphatase 2C-related / PP2C-related |LOCUS: AT3G16560 |PROD: the same as GENE |complement(5635602..5638488) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +780 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.14 T - 0.22 C - 0.15 1 cagaataccc aaattgacct ctgtagtttc aaccaagata ctaataaaaa 51 aactaagcat tatcattgtt tttggtaaaa aatttaaaag atgtacaaaa 101 aaagaagaag ctgaaaaagc aacgaatcaa aaacgaaaaa gacagagaga 151 agaaaagtgt gaaaaaacat tataaaggag agggctttcg attatataat 201 AAACACTACC AAAATTAGCA AACAAAAAAC ATTCACTCGT TAACTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00855 Mean Expected Number 0.000 -strand +41 : +30 AACGaGTGAATG AC RSP00879 Mean Expected Number 0.001 -strand -11 : -17 CGAAAGC Totally 2 motifs of 2 different REs have been found Description of REs found 792. Group RE: 12 bp element /AC: RSP00855//OS: Arabidopsis thaliana /GENE: FIL/RE: 12 bp element /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RALFL23 |LOCUS: AT3G16570 |PROD: rapid alkalinization factor (RALF) family protein |5644704..5645420 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.33 C - 0.22 1 aaaataagta gtggatgtct ccatcaaaaa cacttggcgc attaaaacat 51 ccttagatct gaagctaaca aaaggccact tgtaaagctg tctctttacg 101 acaccaagtg gtattattcg taattacttc catctttcag tggcatttca 151 ttaagctcct tctcttttaa aaaccttttc ttttatctct ctatctcttt 201 CTTCATAGTT CGTGCACAGA GAGAGCTAAA GCTACAGTGT ACAGAAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -126 : -117 GCCACTTGTa AC RSP00522 Mean Expected Number 0.005 -strand -90 : -96 CCACTTG AC RSP00861 Mean Expected Number 0.003 -strand +2 : -7 AGAAAGAGA AC RSP01058 Mean Expected Number 0.003 +strand -192 : -185 TAGTGGAT Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein |LOCUS: AT3G16580 |PROD: the same as GENE |complement(5647382..5648752) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.18 T - 0.27 C - 0.12 1 agtgaacaga aaatattaaa agtaaaacaa aaaaaaaatg aaataataaa 51 cacgaatttt ctaaaattta gatatttgga gattttgttt tttaattatt 101 cacaaacgag gtatttggaa atatcactta aatgaACAAT cggctagaaa 151 ccctaattgg gataagctta tataagtaaa gtagtcaatt agaaagtttc 201 GACTGAAAAC AAACGACCCT AATGGCTCAT GAGGAGAAGC GCCCATGGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -45 : -53 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -53 : -45 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 +strand -54 : -45 gAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: fumarylacetoacetate hydrolase family protein |LOCUS: AT3G16700 |PROD: the same as GENE |5687790..5689722 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.29 C - 0.18 1 caaccggcct cgctagaaac ccttccattt ccatagttgc attatatggg 51 ccaataatgg gccatatatc tcgattatga aaacataagt ttcggaccaa 101 atagttttaa tcactgaatg ttgtaatgtt gtaatcactg aactcggtaa 151 gtaactcagt caacaacaaa tcttaaagag agaaaaagaa gagtctttgt 201 GATTGTTGAC TTGATTGACA TAAAAATGGC GACTTCGATG ATTCAGAGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00917 Mean Expected Number 0.003 +strand +5 : +14 GTTGACTTGA Totally 1 motifs of 1 different REs have been found Description of REs found 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATL2 |LOCUS: AT3G16720 |PROD: |5692744..5694133 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.28 C - 0.18 1 ttatagaaaa ataaaagtta ataactattt agaaccttat ggtaaaaaaa 51 aatacaagta aaagtatatc tctaagcatt ttccctttga aattttcaaa 101 ctaattaaat agttaccaaa acaaaaagaa gaagggcaga atagtcaaaa 151 gagaaaactc gcgcgtcaac gttggcgtcg tcttgccaaa ctttgccaat 201 AATAATAATT AGACTTCTGC ACTTTCTCAC GAACCTCTCT GTCTCGTCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00850 Mean Expected Number 0.009 -strand -25 : -30 GCCAAC AC RSP01559 Mean Expected Number 0.006 -strand -35 : -40 ACGCGC AC RSP01600 Mean Expected Number 0.009 -strand -109 : -116 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATEBP/RAP2.3 |LOCUS: AT3G16770 |PROD: AP2 domain-containing protein RAP2.3 (RAP2.3) |5705721..5707029 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.34 C - 0.18 1 actaaactaa tcacattgtg atacgttttg tattcagaga gccaaaaaaa 51 ggcttacaat tttgtcgtta tgtggattag ccttcaattt gttgtaaccg 101 tcatgtatca aggaacataa aactattaga attattattc taatataaag 151 taattcattt cactcacact ttattaccat aaaacattta ttttgcgcct 201 ATAAAGGCAT TTCAGCTCCA CCGTAGGAAA CTTTCTCTTG AAAGAAACCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00756 Mean Expected Number 0.004 +strand -38 : -31 CTCACACT AC RSP00940 Mean Expected Number 0.005 -strand +28 : +19 TcCTACGGTG AC RSP01032 Mean Expected Number 0.009 +strand -159 : -150 CCAAAAAAAG AC RSP01033 Mean Expected Number 0.004 -strand -149 : -158 CCTTTTTTTG AC RSP01209 Mean Expected Number 0.008 -strand -150 : -159 CTTTTTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L19 (RPL19B) |LOCUS: AT3G16780 |PROD: the same as GENE |5708931..5710415 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.27 C - 0.15 1 ttattgttat tcatcagttt tcataaatga aacaataatg ggccaaagta 51 ggcccattta taaagcgaac gggtcgaatt atcaaaacat ttctgtgtaa 101 gtgggtctta acgaaATTGG agtggaactg aaattagacc caaaaaccct 151 aaagaattga tatgtcttcg atttataagt aggtcatttt tttttgcctt 201 AACAAAAAAG CCCTAAACGG AGAGAGGCGG AGAGGAGAAG GAAGACGGCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.010 -strand +17 : +11 TTTAGGG AC RSP00260 Mean Expected Number 0.010 -strand -48 : -54 TTTAGGG AC RSP00279 Mean Expected Number 0.001 -strand -49 : -57 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -57 : -49 AAACCCTAA AC RSP00559 Mean Expected Number 0.004 -strand -63 : -73 TcTAATTTCAG AC RSP00297 Mean Expected Number 0.000 +strand -150 : -49 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.002 +strand -58 : -49 aAAACCCTAA Totally 7 motifs of 6 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: TENA/THI-4 family protein |LOCUS: AT3G16990 |PROD: the same as GENE |complement(5795845..5796811) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +22 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.26 T - 0.23 C - 0.17 1 tcacgtaatc tgagaaattt aagcgcctct ttacagccgt cgatttggga 51 gaatcattaa gctatcgtgg cgagacttta ataggccttg gcccattaat 101 ttaaagcCCA ATgaaacgtg cacgtcacag acaacagaaa atcaaagcgt 151 tgacagtgaa tcggtgaaga agaagagtct tgagtcttga gtcttgagag 201 AAAGGAAGAA GAAGCAATTT CAATGGAGAA GAGAGGGGTG ATCGACACAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00394 Mean Expected Number 0.010 -strand -166 : -172 TGTAAAG AC RSP00399 Mean Expected Number 0.002 +strand -81 : -74 GCACGTCA AC RSP00837 Mean Expected Number 0.002 -strand -155 : -164 AaATCGACGG AC RSP00862 Mean Expected Number 0.007 +strand -2 : +7 AGAAAGGAA Totally 4 motifs of 4 different REs have been found Description of REs found 377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402 381. Group TF: AP1-like leucine zipper TF /AC: RSP00399//OS: Nicotiana tabacum /GENE: RNP2/RE: ATF /TF: AP1-like leucine zipper TF ||Identical REs AC: RSP00884 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peroxidase, putative |LOCUS: AT3G17070 |PROD: the same as GENE |5820967..5823205 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.36 C - 0.20 1 gtttcgtttc gtataatgag tcgagaggat gactaaactc aacccaaaaa 51 aatcaataac ctatcggtta aaactaggtg ggatctcaaa ccaatttcat 101 gttttaaaaa ttcttttcgg ttgggattat taatgtcacg aattcacggg 151 gactttcttc agcttcctat ttatacatac acttccaatt gcaaatacac 201 AAGTCATCTT CTCTCTCTTT TTTTAGTGTG TGCAAAGTCA TCTTCTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.008 -strand -87 : -98 AGAATTtTTAAA AC RSP00301 Mean Expected Number 0.009 +strand +31 : +37 TGCAAAG AC RSP00442 Mean Expected Number 0.007 -strand +40 : +31 TgACTTTGCA AC RSP00445 Mean Expected Number 0.003 -strand +23 : +14 AAAAAAGAGA AC RSP00653 Mean Expected Number 0.005 +strand +9 : +19 TTCTCTCTCtT AC RSP00864 Mean Expected Number 0.002 -strand +18 : +10 AGAGAGAGA AC RSP00881 Mean Expected Number 0.009 +strand -149 : -140 ATCAAtAACC AC RSP00997 Mean Expected Number 0.003 -strand +8 : -2 GATGACTTGT AC RSP01712 Mean Expected Number 0.002 -strand +26 : +17 CTAAAAAAAG Totally 9 motifs of 9 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G17090 |PROD: the same as GENE |5826809..5829639 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.30 C - 0.29 1 caacagttgt gtaatagtat aggcaaagaa aatggtcgga cagctaaggg 51 aagatcgctc tctcctcatc agacaaaaaa ttacaagcga gaatttcttt 101 gttcctttac gaccggacaa gacacgtccg tcatcgtctt ctactacttt 151 ctatcttacg cctctcccct tatcctacgc caaaacatct tatcctgcgc 201 ATCATCCCTT CCATTAAGAC CTAGGGTTTT CTCTCTCTCC CATCATTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 -strand -71 : -80 CGgACGTGTC AC RSP00864 Mean Expected Number 0.004 -strand +38 : +30 AGAGAGAGA AC RSP00865 Mean Expected Number 0.004 -strand +40 : +32 GGAGAGAGA AC RSP01035 Mean Expected Number 0.009 -strand -74 : -80 ACGTGTC Totally 4 motifs of 4 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RFC3 |LOCUS: AT3G17170 |PROD: ribosomal protein S6 family protein (RFC3) |complement(5852646..5854912) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.36 C - 0.19 1 gaatgtgatt agtctttatg gaaacagagg ttgcttacaa tattttagtt 51 tgactctata tgaatacaaa acaaagggtc ttttttgatc tattgaaact 101 gtaccgggcg atttgggaac atataaataA CAATaggggt caaaatgata 151 ttttaataaa agttttctta tccaaaaccc aaaaatgtct ttgctcttct 201 GCTAAAACCC TCTCTCCCCT TCTTCTTACT TCACTTCACT CGTGCTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.006 +strand -131 : -122 AACAAAGgGT Totally 1 motifs of 1 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MTO3 |LOCUS: AT3G17390 |PROD: S-adenosylmethionine synthetase, putative |complement(5952193..5954088) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +417 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.32 C - 0.20 1 aattcacttt acatgctcaa aaatatctaa tttgcagcat taatttgagt 51 accgataact attattataa tcgtcgtgat tcgcaatctt cttcattaga 101 tgctgtcaag ttgtactcgc acgcggtggt ccagtgaagc aaatccaacg 151 gtttaaaacc ttcttacatt tctagatcta atctgaaccg tcagatatct 201 AGATCTCATT GTCTGAACAC AGTTAGATGA AACTGGGAAT GAATCTGGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.009 -strand -188 : -195 TGTAAAGT AC RSP00869 Mean Expected Number 0.002 -strand -188 : -196 TGTAAAGTG Totally 2 motifs of 2 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: NPSN13 |LOCUS: AT3G17440 |PROD: novel plant SNARE 13 (NPSN13) |complement(5969570..5972493) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.38 C - 0.17 1 caaagtatta ttaggtgaaa ttagtgaaag tgaaataatt tatctaacaa 51 cggatatgga tgggaccaaa aagttggcgc ctcgctgtca tttttttaac 101 taccgaatat ctgtcttttt aatttattta ttaaTCAATt ttgtttttaa 151 aaaatatata tgtttgaata aaaaagaaaa aaacaacaca cacctgacag 201 CTCTCTTTCC CTTTTCCCGT TCTTTGTCGT CCTTTGTTTC GTCTTTCATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.003 +strand -6 : +2 TGACAGCT AC RSP00416 Mean Expected Number 0.009 -strand -139 : -145 CATCCAT AC RSP00445 Mean Expected Number 0.008 +strand -31 : -22 AAAAAAGAaA AC RSP00635 Mean Expected Number 0.001 -strand -134 : -141 GGTCCCAT AC RSP01601 Mean Expected Number 0.005 -strand -166 : -173 TTTCACTT Totally 5 motifs of 5 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G17609 |PROD: the same as GENE |6023933..6024699 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.34 C - 0.20 1 aagaaaacac agatacacac cattggattg aaacagttgc atttgtggtc 51 ttacataaac ctacgtgttc ttttataagc caaccaatac ttttctcttt 101 ttttttgttt gaaacgagtt gcagactttg agtggcccca aagaagaaag 151 aaaagatgca atttcctttg gtttgatatt ctcttcaacc tcttacctct 201 CTATTCTCGT CTTTAGCAAA ATCTCAAAAG ACAAAAAGAT ATTGATGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00235 Mean Expected Number 0.001 -strand -170 : -181 TcAATCCAATGG AC RSP00445 Mean Expected Number 0.002 -strand -98 : -107 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.002 +strand -56 : -48 AGAAAGAAA AC RSP00941 Mean Expected Number 0.006 -strand -168 : -175 TTTCAATC AC RSP01260 Mean Expected Number 0.003 +strand -140 : -133 CTACGTGT AC RSP01594 Mean Expected Number 0.006 +strand -175 : -168 GATTGAAA Totally 6 motifs of 6 different REs have been found Description of REs found 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein |LOCUS: AT3G17710 |PROD: the same as GENE |6055554..6056784 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.40 C - 0.16 1 agttttgtca attttaaatg cccatttatc cttcttcttc ttcttcttct 51 tttttttctt tttttttcgt cggcaacttg tctcaagttt atctttcttc 101 aatataattt agcagctaaA TTGTaaaaag taaaaacagt ttgaccaaac 151 aaaaattaat tttatttcct atataatcag attatttagc agctggaatt 201 GCAAAAACAG TTTGACCGAA AAAAAAGGAT TTGTAAAACA GAGCACCTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 +strand -76 : -65 AAAAAGTAAAAA AC RSP00056 Mean Expected Number 0.002 +strand -128 : -119 GCaACTTGTC AC RSP00359 Mean Expected Number 0.004 -strand -127 : -132 GCCGAC Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glutamate decarboxylase, putative |LOCUS: AT3G17760 |PROD: the same as GENE |complement(6078818..6080883) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.36 C - 0.13 1 aatatgcagt gattctgata ttgttctctg tttaattgtt tgaggacaat 51 aataagttgt tgaaataatg taccaaatcc ccaattcaag gggaagagag 101 ggtcaagggg ggagttagtt atatgaatgt cttaaattag tgttaagaga 151 gtttttgctt tcttactttc tttatatttg tgaaaagctt ctgacatagt 201 ATATTTTTAT GTTCAACAAT TCAGCATAAC TCAAACACAA TGGTACTCGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.008 +strand -118 : -111 AATTCAAG Totally 1 motifs of 1 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATACP5 |LOCUS: AT3G17790 |PROD: acid phosphatase type 5 (ACP5) |6089628..6091999 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.39 C - 0.24 1 agaagaggtg gatgtcagaa tttgagatcc aaaaagaaaa aaaaaaacaa 51 agatgcggct actggttgga atatccttca gcatctttaa ccgcaccttt 101 ttttcttttt ttctttattt ttctttaacc gcatctttaa tatttttcgg 151 tttaaaaagg atcatcgtct ccctccttct ttcatcatca tcgtttcctt 201 CACCATTCAC GTTTCTCTTC TTCTCGTCAC AAATTCCTTA TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.009 +strand +20 : +29 CTTcTCGTCA AC RSP00847 Mean Expected Number 0.000 -strand -190 : -199 CCACCTCtTC AC RSP00864 Mean Expected Number 0.007 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +49 : +41 AGAGAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G17800 |PROD: the same as GENE |complement(6090467..6093157) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +278 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.33 C - 0.14 1 taagaaaaca gaagagaaaa gtatttggtt tagactttag agttttaagg 51 actgcaagga ttttactatc gaactttcta gttcaggtaa ttagatagtg 101 atattattgt gttcgatatt TCAATgacgc tacaaaaaga ataattcgtc 151 tttttttttt taaaatatcg ttattgtaca aactacaaac gaaacgaaga 201 ACACACAACA TAAACACGGC CTCAAATAAT TTCCATGGTC TCAAAATATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00999 Mean Expected Number 0.007 -strand -100 : -110 TCACTATCTAA Totally 1 motifs of 1 different REs have been found Description of REs found 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATGSKB6 |LOCUS: AT3G17820 |PROD: glutamine synthetase (GS1) |6097420..6099601 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.29 C - 0.16 1 gccataataa cctgtaatct caggagaatc ctaacggaaa agagaatatt 51 agacgatagt attatatgga gtattaatta cttattaaca attctaggag 101 ataatatcag cacacaACAA Taaaagaaat tactaattta ctggaatcat 151 gtattcaccg taattattta aggagaggaa aaaaaaaata caagctcttt 201 CTCTATAAAC ACACACTCTC AGGAGAGAAG TTGTATTGAT CGTCTTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00559 Mean Expected Number 0.004 +strand -188 : -178 TGTAATcTCAG AC RSP00709 Mean Expected Number 0.010 +strand -40 : -32 TAATTATTT AC RSP00979 Mean Expected Number 0.005 -strand +38 : +29 CaATACAACT Totally 3 motifs of 3 different REs have been found Description of REs found 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATTDX |LOCUS: AT3G17880 |PROD: tetratricoredoxin (TDX) |6123452..6126276 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.28 C - 0.20 1 ctaatttcaa tatgtgggcc attttgtgtt gtagcccatc aaggcccaat 51 gtcttattgc acaacgaaaa gggatgttgc aaaagatgat aaaccggata 101 tgaattcagt cgcggttaag ttaacgcgaa gacaaaaccg gttggacatg 151 ttcggttttc ggcgatgatt atttcaacgt ttttcagtct aatcaaaacc 201 AATACGAGCA GACACAGCTC CGTACGATCA CAAGGATTCA CTGATTTCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00501 Mean Expected Number 0.009 +strand +5 : +11 CGAGCAG AC RSP00716 Mean Expected Number 0.002 +strand -7 : +2 CAAAACCAA AC RSP00961 Mean Expected Number 0.006 +strand -123 : -116 TGCAAAAG AC RSP01000 Mean Expected Number 0.005 -strand -179 : -188 ATGgCCCACA Totally 4 motifs of 4 different REs have been found Description of REs found 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G17930 |PROD: the same as GENE |complement(6141834..6143316) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.32 C - 0.21 1 ttgtgcagcg aatgaatctc ccattgttca catgaacttg gaaaaaaaga 51 gcaattagtg tatttgagta attctgatgg caattatgtc tacacgcatg 101 tcttttgggc ggtgagaaac acgcgccact aaagaagcaa aagcctatgg 151 gccccaaaaa atatcaacca tccatctctg taatctcttc gtcctccctt 201 AAATTTTTGT TTCATTATTT TTTTCACTAG TAACCACGGC TTGTGTTGTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -158 : -149 AAAAAAGAGc AC RSP00523 Mean Expected Number 0.006 +strand -82 : -76 ACACGCG Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G18140 |PROD: the same as GENE |complement(6212602..6214791) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +218 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.38 C - 0.20 1 cgccattgtt gccgtctcta aaagcttcca aggagtctca gccgttatgt 51 ctgtcagtga agtagtgaac aaatagttgt tctttatatt ttcttattac 101 ttttcataaa taacaaaata gccctttact tattttcgta tatttaaata 151 aaccccaata gatatatatt tatactaaaa cctccccgcg ttaattaatt 201 ATGAGAAAAG CTTGGTAAAA ACCCTATTTT TCTTCTTCTC TTCAATTTAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01104 Mean Expected Number 0.004 +strand -23 : -16 AAACCTCC AC RSP01733 Mean Expected Number 0.009 +strand -15 : -10 CCGCGT Totally 2 motifs of 2 different REs have been found Description of REs found 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peroxin-3 family protein, contains Pfam domain |LOCUS: AT3G18160 |PROD: the same as GENE |6220632..6223079 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +292 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.34 C - 0.17 1 tttgattttt ctaaaccaac gataaaatcg gtctactgaa attactaccg 51 agtttatcag ttcaacatct ttcggtcgga acgtatatgt atatgttggt 101 tgacctaata aagcaaatag actttggttc ggttaagttc ggttaaataa 151 agaaaaagca gattctgagc tttgtttgtg agattcagtt tccaatatca 201 GAGAATCTCT GTGTCGCCTG AAGTGATAAC ATTCTCATTA TTCACCCAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 -strand -82 : -92 TATTTGCTTtA AC RSP00559 Mean Expected Number 0.004 -strand -155 : -165 aGTAATTTCAG AC RSP00996 Mean Expected Number 0.004 -strand -135 : -144 GTTGAACTGA Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: chaperonin, putative |LOCUS: AT3G18190 |PROD: the same as GENE |6232132..6234066 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.35 C - 0.24 1 aattaccaga tcatttggtc tagtttagat ttttctcaaa tttgtttaac 51 cgtcccctta acaaacactc aagtctgaag tctgaaccaa taactgggcc 101 ttttgggcta actcataaaa actcaaaaca ggcccattta tcaaACAATa 151 gcgtataccc tagggctttt ttcaaattct ctattctctc tttcatttcc 201 AGAACACTCT TGTCACACTT CCATTTAGGG TTTTCTGCAA ATTTCTCCGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.006 +strand +24 : +30 TTTAGGG AC RSP00279 Mean Expected Number 0.001 +strand +25 : +33 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +33 : +25 AAACCCTAA AC RSP00888 Mean Expected Number 0.005 -strand -167 : -175 AAAAATCTA AC RSP01303 Mean Expected Number 0.001 -strand +34 : +25 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G18240 |PROD: the same as GENE |6255792..6258096 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.27 C - 0.22 1 ttttatcttc agctaacctt ctaagacaac atccacaaac atagctccac 51 catgaaaaaa taacaacctt aagtatatgt attgctaact aaaccggaca 101 gatgaaacta aaccggagat taagacattt aaccaaattA TTGAttcagg 151 ttctgtagca gattcaggta tgaagaagag cttttttcct gtcacaacct 201 AAAACCCTAA ATCTCTGATC CGCCATGAGA GGAGCTCTCT TGAGAAATGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand +10 : +2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +2 : +10 AAACCCTAA AC RSP01303 Mean Expected Number 0.008 +strand +1 : +10 aAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: reticulon family protein (RTNLB9) |LOCUS: AT3G18260 |PROD: the same as GENE |complement(6260247..6261597) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.40 C - 0.18 1 atatatgcaa cgtacgtgag gggtttgaat agtttattga gacatgaaga 51 tgaagaaata aatgggagaa ggaacaaggt caaaaccatt cccattcttt 101 gcttcttgaa tatgtttttg ttacctttgt tcccaagcct agaacctatc 151 tcttcttctt tcttcttata tttgttgctt ttcacatttt ctcctaatcc 201 AAATCAACTA TTTTACATAG TGATTACATT CATTTCATTG TTGTTTCTTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.006 +strand -189 : -183 GTACGTG AC RSP00383 Mean Expected Number 0.008 +strand -123 : -117 GGTCAAA AC RSP00985 Mean Expected Number 0.006 -strand -50 : -59 AGaTAGGTTC AC RSP00999 Mean Expected Number 0.004 -strand +23 : +13 TCACTATgTAA AC RSP01678 Mean Expected Number 0.009 -strand -162 : -173 CAATAAAcTATT Totally 5 motifs of 5 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: tetratricopeptide repeat (TPR)-containing protein |LOCUS: AT3G18420 |PROD: the same as GENE |complement(6324639..6325799) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.34 C - 0.22 1 cgattttgat ttacttggtc gcatgcgttg atctgattct tccgtatctc 51 agtctaaagt ttcgccggag atctgcctta agaaaactaa aaggccaaag 101 acCCAATtat ttaaaggccc ataatataaa aaccaagccc aaatatactt 151 cacacaagct acgcgtgtct gatatatcgc catggcttag tgctttgttt 201 GTTCATCATC TCTTTTGATT TTGATTGTGC TTCTGCAACC TTTGATACTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 +strand -41 : -32 tACGCGTGTC AC RSP00523 Mean Expected Number 0.007 -strand -33 : -39 ACACGCG AC RSP00996 Mean Expected Number 0.004 +strand -174 : -165 GTTGATCTGA Totally 3 motifs of 3 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: calcium-binding EF hand family protein |LOCUS: AT3G18430 |PROD: the same as GENE |6325950..6327638 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +236 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.27 C - 0.17 1 gagtatcaaa ggttgcagaa gcacaatcaa aatcaaaaga gatgatgaac 51 aaacaaagca ctaagccatg gcgatatatc agacacgcgt agcttgtgtg 101 aagtatattt gggcttggtt tttatattat gggcctttaa ataATTGGgt 151 ctttggcctt ttagttttct taaggcagat ctccggcgaa actttagact 201 GAGATACGGA AGAATCAGAT CAACGCATGC GACCAAGTAA ATCAAAATCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.003 -strand -110 : -119 tACGCGTGTC AC RSP00523 Mean Expected Number 0.007 +strand -118 : -112 ACACGCG AC RSP00996 Mean Expected Number 0.004 -strand +24 : +15 GTTGATCTGA Totally 3 motifs of 3 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G18520 |PROD: the same as GENE |6361182..6365621 |SUPPORT | 18 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +429 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.37 C - 0.19 1 aacctaaatt ggctttgtga agtaagattc agtcgtactt tgctctttca 51 atacttgaac attaatgaaa aattccaagc aaaaggaaat aaaaataaat 101 agtttgactc aaatttggta atgggcttat agtgttATTG Ggtcttcatc 151 ttcagcccaa ataatctttt actctttcaa gtctgaacgt cgtcatcttc 201 GTTGTCGCCG TCGTCGTTTC TCTCATTTCT GCTCTGTTGT GCTATCGTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.007 +strand -121 : -115 CAAAAGG AC RSP00140 Mean Expected Number 0.001 -strand -101 : -113 AtTTATTTTTATT AC RSP00792 Mean Expected Number 0.003 +strand -126 : -117 CCAAGCAAaA Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: uracil DNA glycosylase family protein |LOCUS: AT3G18630 |PROD: the same as GENE |complement(6410379..6413074) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.35 C - 0.21 1 acagaactac taaattcgtt cctaaactaa aatgtcaaat tgaaattgga 51 attgtttctg actttctgag tgtgcgaatc ttcctttaac cggtttatat 101 cggcctgaag agattcctta accggcctat accaccgtta ttcccgccat 151 ttaactcttc tctgaaactt ttctgggaaa cataaaaaaa aattgagaat 201 AAAAAATTGG GATCTCTTCT TCTTCTTCTT CTTCTTCATA GTGACTGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00299 Mean Expected Number 0.001 +strand -61 : -50 ATTCCCGCCAtT AC RSP00366 Mean Expected Number 0.001 +strand -142 : -131 TGACTTTCTGAg Totally 2 motifs of 2 different REs have been found Description of REs found 288. Group TF: E2F /AC: RSP00299//OS: Nicotiana benthamiana /GENE: PCNA/RE: E2F-2 /TF: E2F 351. Group RE: ERE /Group TF: TDBA12 /AC: RSP00366//OS: Nicotiana tabacum /GENE: CHN50/RE: ERE /TF: TDBA12 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MKS1 |LOCUS: AT3G18690 |PROD: VQ motif-containing protein |complement(6429540..6430508) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.36 C - 0.17 1 ttgataatgt tgattcctaa gatctttcct actaattaat tatctaacat 51 taagacaaga atggaagttt cctaattaag catgtgctgt aacaatttgg 101 ttggagacac aaaaagtcaa cattttttaa agtcaaacta atcgttctga 151 tgacttttta tttctttctc ttttttgttg ttttggtcaa ttttctcagt 201 CGCCAAAACA TTCAATTCCC AAACCAAACA GAGCAGAAGA ACAACAAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 -strand -25 : -34 AAAAAAGAGA AC RSP00467 Mean Expected Number 0.003 +strand -17 : -8 TGGTCAATTt AC RSP00468 Mean Expected Number 0.001 +strand -18 : -8 TTGGTCAATTt AC RSP00595 Mean Expected Number 0.003 -strand -120 : -128 GCTTAATTA AC RSP00860 Mean Expected Number 0.006 -strand -32 : -40 AGAAAGAAA AC RSP01482 Mean Expected Number 0.001 -strand -8 : -18 aAATTGACCAA Totally 6 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein |LOCUS: AT3G18720 |PROD: the same as GENE |complement(6444373..6445765) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +8 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.29 C - 0.18 1 tttacacatt tgggttgtga tgtgtaaatt tgctgcagtt taagcgttaa 51 tgctcatata aatttagtga cgttaatctt atgcaacttt ttaaaaaatg 101 taaaaatttc ttaaaatgtt gagacttgag agagagatct aaaaataaaa 151 acaaaaacaa aactcatttc tcatctagaa gacgaaaacc ctatctgatc 201 ACTCCAAAAT GAGGACGCGC CGGCAAACAT ATCCGCCGAT CGCTGAATCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -106 : -95 AAAAtGTAAAAA AC RSP00270 Mean Expected Number 0.002 +strand -198 : -188 TACACaTTTGG AC RSP00405 Mean Expected Number 0.007 -strand +8 : +1 TTTGGAGT AC RSP00864 Mean Expected Number 0.001 +strand -72 : -64 AGAGAGAGA AC RSP01128 Mean Expected Number 0.009 +strand -165 : -147 CAGT-- ** bp --TGCT AC RSP01654 Mean Expected Number 0.005 +strand -135 : -126 AGTGACGTTA Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L30 (RPL30C) |LOCUS: AT3G18740 |PROD: the same as GENE |6453374..6454011 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.29 C - 0.25 1 tttggtccca tcccaaacta tcccgccaaa attcaagggt aaattagaaa 51 ttttcatacc ctaaatcctg aagttatagg ccttttagtt tgggccttgg 101 gtcgagttta ttttgggctt cttatatcct cctgtctcct gacaagaaaa 151 caaaaaaacc ctaagggttc taaggcactc gctatataaa ctatcatttt 201 GCGCCGCCCG AACCCGAAGA AGAACTCTCT CTTGTAAACC TGCGATCTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -37 : -45 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -45 : -37 AAACCCTAA AC RSP00635 Mean Expected Number 0.003 +strand -197 : -190 GGTCCCAT AC RSP00877 Mean Expected Number 0.001 +strand -179 : -171 CCCGCCAAA AC RSP00894 Mean Expected Number 0.006 +strand -171 : -164 AATTCAAG AC RSP00988 Mean Expected Number 0.001 +strand -181 : -170 aTCCCGCCAAAA AC RSP01303 Mean Expected Number 0.005 +strand -46 : -37 aAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ribosomal protein S6 family protein |LOCUS: AT3G18760 |PROD: the same as GENE |complement(6457696..6459633) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.29 C - 0.20 1 ttataatcat tacaaagctt tcatttgttg tcaactaata tgaaagcttt 51 ctacaatttc ttatttcatt ttccaaatca aatttaagaa ctctcagaca 101 aaaataatat atatagcaac acgatgtcgt tttcactaaa aaaaacttaa 151 caacacgtcg ccgtttggta atgacccaat cggcgaaatc tgagaagact 201 AAAACCCTAA GGTAAACCTG AGAGAACAAG CCAGAGCTAA TCTCTTGTCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand +10 : +2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +2 : +10 AAACCCTAA AC RSP01015 Mean Expected Number 0.006 -strand -174 : -183 CAAATGAAAG AC RSP01303 Mean Expected Number 0.008 +strand +1 : +10 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G18773 |PROD: the same as GENE |6465831..6467123 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +479 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.29 C - 0.14 1 tattatatag taaattatgt gactttggtt gcaatcattt ccaaaaatta 51 ggtaatttac tgaaaggaaa agaaataaac gttttcagat atattttgat 101 ttttctctta aaaaacagtg agaattatga atgaagcgac acgacacatg 151 tgagaaaagc tcaataatac atgagaatta tagagcaaca aaacacaaca 201 CTGCTTTACA ACTATCAAAT ACTAGTGTCG CCAAACCATC ATAATAGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.009 -strand -97 : -104 AAAAATCA AC RSP01469 Mean Expected Number 0.010 -strand -48 : -57 TCACATGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G18800 |PROD: the same as GENE |6479694..6480384 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.29 C - 0.24 1 acattgttcc tttggctcta actagattgg tgctatgcag agacataagt 51 tgagaccaac cacaagcatt tttctggttt tgattttact cccagtaaaa 101 tatttATTGA gtacggacaa aacatcaaaa atcagaacaa gaccgttgag 151 atggataata cttgtctaga gatacgaacc acacccacat gttcctacac 201 ACAATCCCCA AACCATCTCT CTAACCAATA ACACTTTTTC TCTCTTCTCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.000 +strand -61 : -53 AGACCGTTG AC RSP00653 Mean Expected Number 0.004 +strand +38 : +48 TTCTCTCTtCT AC RSP00857 Mean Expected Number 0.002 -strand -47 : -56 CCATCTcAAC AC RSP01640 Mean Expected Number 0.004 -strand -153 : -162 tTATGTCTCT AC RSP01678 Mean Expected Number 0.005 +strand -108 : -97 CAgTAAAATATT Totally 5 motifs of 5 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: clast3-related |LOCUS: AT3G18940 |PROD: the same as GENE |complement(6526966..6529137) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.38 C - 0.21 1 catttcttct tttattttct cgtcaccttt tttttttttg gacaaaatcg 51 tcaccaagta tatatactct acagttgtag tccatcatct ttttccttta 101 ttgggcttta atatggccca tattacattt gATTGAtaat atcggcccaa 151 attagtcact ggctttctct tcaagctcga ccaaagaaga agaactgttc 201 TGAACGCAGG CAGAGATTCT TCGAACTTGA TATTTGGGAA ACTTGCAATC 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein |LOCUS: AT3G18980 |PROD: the same as GENE |6546469..6548068 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 1 aattctctct agtgtaaaaa atattctctt gaatccttgg ttttccatag 51 cgtgtgtgta ttgatttaca aatatagaat ctacagaaaa caagattgag 101 ggtgcaaaaa tgaaaatata ttcagaATTG Agggagcaat ttgttacatt 151 tcctctttcc agtctatgta tatatctcgc aagaggaaag ctgaagaaaa 201 GCAAAACCCT AGAAAATAAA TAATATTCCG TGGCGCCTGC GGCAGAGATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.010 +strand -6 : +4 AGaAAAGCAA AC RSP01217 Mean Expected Number 0.000 +strand -42 : -31 CCAGTCTATGTA Totally 2 motifs of 2 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1124. Group TF: LFY /AC: RSP01217//OS: Brassica oleracea /GENE: BoCRC/RE: CL2 /TF: LFY ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxidoreductase |LOCUS: AT3G19000 |PROD: the same as GENE |complement(6553535..6555153) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.31 C - 0.14 1 ttgattgtta acctcaagtt tatagatagg ttggtatgcc aagaatatgc 51 aagagagcag cccttcgagc tattagaagg aacttatttg atttgactcg 101 aaacaaattg tgatgtttac gtctaACAAT aggaagaccc taaatgacat 151 ttagctgaac tacgataaag accaaaggaa aaaataacct atagtggttt 201 GCATAAATTA GTATAGATTC ATTTTATTTC AGGGAGAAAT TAAATTCTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01454 Mean Expected Number 0.009 -strand -166 : -172 ACCAACC Totally 1 motifs of 1 different REs have been found Description of REs found 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G19120 |PROD: the same as GENE |complement(6609418..6611065) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.34 C - 0.20 1 ggtttgtctc agactaatat aaatggttgc aacttgttgg atcaaaattc 51 cgcttacctt ctacgaattg cttataagcc caaaactttc tgaaattaaa 101 caaacaaccc caaaacttta aaattatatt tattaactca cattaatttt 151 aaatttttag ctattagccc tttctctctc acttcttcag tttttcttct 201 ACTCTCAACC TCTCCGGAGA GAAAAAAATC GGAGAGTGAA GATGGAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00559 Mean Expected Number 0.006 -strand -101 : -111 TtTAATTTCAG Totally 1 motifs of 1 different REs have been found Description of REs found 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATRBP47B |LOCUS: AT3G19130 |PROD: RNA-binding protein, putative |complement(6611219..6614050) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.30 C - 0.25 1 atatgttttt gtttttaccc aatgattaaa aagtcagtta tattttaaaa 51 accctagaag gtgaaataat taaatgtaag tggctaaatg cggtggaatc 101 agagccgtcg atctcaaaaa acaacacggc ttaagcacgt aaatgggccc 151 cacgtttcgg ccacttcccc aagacccatt gtttcagcct taaacccatt 201 AACTCACTTC TCTCTCTCTC TCTCCGCCTC CTTTTAAGAC CAAATCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.002 -strand -117 : -126 GCCACtTACA AC RSP00709 Mean Expected Number 0.005 -strand -129 : -137 TAATTATTT AC RSP00773 Mean Expected Number 0.003 -strand +6 : -4 TGAGTTAATG AC RSP00837 Mean Expected Number 0.006 -strand -87 : -96 AGATCGACGG AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +19 : +11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +17 : +9 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +25 : +17 GGAGAGAGA AC RSP01004 Mean Expected Number 0.009 +strand -64 : -55 ACgTAAATGG AC RSP01283 Mean Expected Number 0.000 -strand +24 : +8 GAGAGAGAGAGAGAGAA Totally 11 motifs of 8 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LAG1 HOMOLOG 2 |LOCUS: AT3G19260 |PROD: longevity-assurance (LAG1) family protein |complement(6669152..6671525) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +262 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.50 G - 0.14 T - 0.28 C - 0.08 1 tttttttaat aaactgtatt ttaaacaata aaaataatta atactagtgt 51 gaatgagagt aattaaaaag caaaaaaaaa aaaaaaagaa gaaagagaga 101 gacttcttca tatacactgt atttttaaaa aataataaat aattaatact 151 agtaattatg aggagttgtt ctttgttgtc gatacgaaac taaaatacat 201 AATAAACAAT CAAAAAGAGA AAAAAAGAAA GAAGGTCTGT GAGATCCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00140 Mean Expected Number 0.003 -strand -162 : -174 AATTATTTTTATT AC RSP00861 Mean Expected Number 0.009 +strand -111 : -103 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 +strand -107 : -99 AGAGAGAGA AC RSP01019 Mean Expected Number 0.005 -strand -90 : -96 ATGAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: reticulon family protein (RTNLB11) |LOCUS: AT3G19460 |PROD: the same as GENE |6747376..6749313 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +230 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.32 C - 0.12 1 aatcattatg ataagaattt tcttccactt gaactcaaat ttgttaacaa 51 ttctgaatct gaattatggc tgacaccaat tgaaactgag aaccagttta 101 aagtgattat aaagaaaagt gaaatctttt tATTGCcaac caactttggg 151 ctaagtatta aaagaaaata atactttttt gataagaaaa aaaaaagagg 201 AAAATAATTT GATTATAATT AAAATCTAAA AACTTTTTCG CGGAAGCGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.003 +strand -176 : -170 CCACTTG AC RSP01150 Mean Expected Number 0.001 -strand +20 : +10 AATTATAATCA Totally 2 motifs of 2 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein |LOCUS: AT3G19470 |PROD: the same as GENE |6749492..6751020 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +280 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.19 T - 0.41 C - 0.16 1 aataattaat ttgttgatta ttaaagatta cagttacagt ttcaaccaaa 51 acaaaatgtg atatatgtgc ctagtcgtct tatctctctc tcgttcacat 101 tggataggct tttgggcttt taaagtccac tttcagtgaa catggacccg 151 attgagcttt atgggttctt gtttgtttgt tctgtcggtc gtgattcctg 201 AGGATAATTG ATCTTTTCTT CTTTGTTAAC CTAAGTTATT TGGGATTTGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.004 +strand -85 : -76 GCTTTTAAAG AC RSP00864 Mean Expected Number 0.002 -strand -110 : -118 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATNHD1 |LOCUS: AT3G19490 |PROD: sodium hydrogen antiporter, putative |complement(6754122..6758267) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.39 C - 0.12 1 tttcatcaat caattagata tgaaatgtta ttatttattt attttgaaaa 51 tagactgaaa atttgaaatt tttttaacta gttaatgtgc taaaatatta 101 tgtaactttt ccagtaaaat tatattaagc ttaaaagtag ttgtttttgt 151 tttaaaggga ttagattgta aaatcccaga atttaagata tttgcaaact 201 ACACAGACAC ACTTCTACTT TGACCGGTAA TTTCATTACA TCGCCGGACG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00160 Mean Expected Number 0.001 -strand -25 : -36 GGATTTTACAaT AC RSP00241 Mean Expected Number 0.009 -strand +26 : +21 CGGTCA AC RSP00284 Mean Expected Number 0.004 -strand +51 : +46 CCGTCC Totally 3 motifs of 3 different REs have been found Description of REs found 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ethylene-responsive protein -related |LOCUS: AT3G19500 |PROD: the same as GENE |complement(6759022..6760945) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.32 C - 0.15 1 cattacattt tccttcgtag aatttagaca ggtgatgtta aagaaaacaa 51 aaaaagagaa aactaataat tgtatatata tatgtatata aataaatatt 101 agaacatcag ccattttgtg aataaaccag ttataaaagt ctaaaaaagg 151 taaagagaaa aacatttcac caaaaaaaat cctctggtta atgttttctc 201 ACTTTCTCTT TGTTTTCTTT CTAACCTCTT TCCACGAAAA GTCACGATGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00109 Mean Expected Number 0.010 -strand -167 : -172 CACCTG AC RSP00445 Mean Expected Number 0.003 +strand -151 : -142 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.002 -strand +22 : +14 AGAAAGAAA AC RSP00953 Mean Expected Number 0.009 -strand -129 : -137 CAATTATTA AC RSP01033 Mean Expected Number 0.006 -strand -51 : -60 CCTTTTTTAG AC RSP01205 Mean Expected Number 0.007 -strand -51 : -60 CCTTTTTTAG Totally 6 motifs of 6 different REs have been found Description of REs found 107. Group RE: E-site /AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: E-site /TF: unknown ||Identical REs AC: RSP00309 RSP01147 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G19520 |PROD: the same as GENE |6772696..6774449 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.25 C - 0.23 1 aaacgcttcg aagtgaacgg gaaactttcc ctccttgaac ttaaaaatct 51 agatagttct atagcaaagc tgaagcatac ctgtgaacaa atcccggccc 101 ttgggccaag cccgtgaata tctatatcag atatgagatt tgggttgaga 151 aggcccaaca gaagccaata aatgaattca ttccgtcgga tgaatataat 201 ACGTATAACG CCTGAATAAA TCTTTCAGAC CTGCGTCGAC GGTTCGCTGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00888 Mean Expected Number 0.004 +strand -158 : -150 AAAAATCTA AC RSP01497 Mean Expected Number 0.004 +strand -19 : -10 tCCGTCGGAT Totally 2 motifs of 2 different REs have been found Description of REs found 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G19590 |PROD: the same as GENE |6805651..6808599 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.38 C - 0.19 1 agattctata ctcttcttac ctttttgggc ttgcaaggtt ctgtataata 51 tgggctttat tagcccaatc atctcgaaat atgtaagtcc gtatcagaca 101 tctaacggcc catcttcgtt gaactcgtgt tttacatgat tcattttgga 151 tcattgaagt ttcgaccatt tcgctaattc gaattcaaat aaaataaaat 201 TAGTTTTTCT GTTTGGATAT GTAGAGTAGA TCTAATCGAC CCTTGTACTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01214 Mean Expected Number 0.004 +strand -181 : -172 CCTTTTTGGG Totally 1 motifs of 1 different REs have been found Description of REs found 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G19680 |PROD: the same as GENE |6840287..6842326 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +167 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.36 C - 0.20 1 taatcgaaaa cgtttagaaa agtaaaaaaa tcaaaaaatg atgtgaaaaa 51 aataagtctg cctctctgga aaatgatagg tgaggttaat aaagcccact 101 gttttggggt ttgaccccac agaatctcta ttttattctg taaaaccaaa 151 tatctttttt tgtaattaat taatttatgt acattcccca gctattttcc 201 AGCCTGTGTT TCCTCTCCCA ATTCTTTCCA TTTTTATACC TTCTCTCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -184 : -173 gAAAAGTAAAAA AC RSP00230 Mean Expected Number 0.004 -strand -114 : -123 AACCTcACCT AC RSP00615 Mean Expected Number 0.007 -strand -117 : -122 CTCACC AC RSP00749 Mean Expected Number 0.005 +strand -44 : -33 tTTTTGTAATTA AC RSP01007 Mean Expected Number 0.007 -strand -120 : -126 ACCTATC AC RSP01208 Mean Expected Number 0.000 +strand -105 : -94 CCACTGTTTTGG Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G19800 |PROD: the same as GENE |6876120..6878156 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.35 C - 0.17 1 ggttcccaga taaaggtaag ggtattttgg tcataatctc agcttacata 51 cttgtttgac ttttttagta tgacttacga cttttgtttc tttttttgta 101 aatttactaa taatataagt atgagaagaa gacacgtgaa gcgccaaaag 151 acttgtgggg agtgtatacc ggataaggtt tgcatggtct ctaagacctc 201 AGGTTCTTCC TCACAGTCCT TTCTAAAGAA TCATCATCCA TGGATGTACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.003 -strand -61 : -70 TtCACGTGTC AC RSP00524 Mean Expected Number 0.008 +strand -69 : -63 ACACGTG AC RSP01035 Mean Expected Number 0.008 -strand -64 : -70 ACGTGTC AC RSP01215 Mean Expected Number 0.001 -strand -185 : -195 CCTTTATCTGG Totally 4 motifs of 4 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G19900 |PROD: the same as GENE |complement(6922574..6925029) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +466 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.47 C - 0.16 1 taatttggat aaatatgtgt ttttttttgt ctttttataa gtcatgtatt 51 ttaatttaag acgtttttgt gcatgctatc tttttttttt gttctactat 101 aatttttagc aaatcttatg atatcATTGA tatagcgaaa atgaaaacta 151 tacgcaaagt tttaagagtt ttatttttgt ttcctccttc accgttcatt 201 CACTGATATG TGTGATATCT CTTTGTCCCC CATCTATTAA TCTCCTCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 -strand -126 : -132 CATGCAC AC RSP00404 Mean Expected Number 0.003 -strand -43 : -49 TTTGCGT AC RSP00872 Mean Expected Number 0.008 +strand +9 : +18 TGTGTGAtAT Totally 3 motifs of 3 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G19910 |PROD: the same as GENE |6926314..6929572 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +189 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.30 C - 0.12 1 taggccgata gtgaaaagca tcgatcaaaa atgaatatac tcctaatcat 51 gatttttgga ttaacacata ctacctagtg atgacttttg gattaacaca 101 tactacctAT TGAcattata aacggaaagg tggaggtgta aatgataata 151 aatatatatt agtcggtgag tttagaaaga aacaaaaatt aaaggggtgt 201 GATTTCGAAG AAAATGTTGC ATAGTTTTCA AAATTTGAAA ATCTCAGCTA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CYP705A19 |LOCUS: AT3G20100 |PROD: cytochrome P450 family protein |7019001..7020907 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.36 C - 0.19 1 tgaaatctat gtcccactta ctgtacttgc aaaccatgtt atctttgctt 51 atacatgtct tagtatattt gacgtgtcgc aagatctgag tatattaaca 101 aaaacattTC AATtattaat aggtaatcaa agcataacca tacattagat 151 ttcccttatt gataagagag tattatatgt gtcatttgcc tctttttcat 201 TTGAGCATCA CTGGCAGCAA TGACCACCAC TGAGTTTCAA AGCTGCTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00333 Mean Expected Number 0.002 +strand -63 : -55 CCATACATT AC RSP00953 Mean Expected Number 0.007 +strand -91 : -83 CAATTATTA AC RSP01035 Mean Expected Number 0.007 +strand -129 : -123 ACGTGTC AC RSP01093 Mean Expected Number 0.004 -strand -148 : -158 TaTAAGCAAAG AC RSP01128 Mean Expected Number 0.009 -strand +32 : +15 CAGT-- +9 bp --TGCT AC RSP01258 Mean Expected Number 0.002 +strand -131 : -124 TGACGTGT AC RSP01600 Mean Expected Number 0.009 +strand +35 : +42 TTTCAAAG Totally 7 motifs of 7 different REs have been found Description of REs found 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DELTA-VPE |LOCUS: AT3G20210 |PROD: vacuolar processing enzyme |7052426..7054749 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.28 C - 0.21 1 tgagaataaa aaagggaaaa aaaataagaa gctagcaaac aaagcaatta 51 acatttcaag gcagttaatt catcatgcaa ggtgcttatg tgtgacaacg 101 tcatgcgtta ctttttgcgt ctacactcat ctctctaacG CAATccacta 151 attctggtaa tggattctgc tatttagacc agccagtttc ttcgtctctc 201 AATCATCATC CAAAAACATT CTTCTCACAA GAATCAGATT CAAGATAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.008 +strand -87 : -81 TTTGCGT AC RSP00447 Mean Expected Number 0.010 +strand -163 : -154 AaCAAAGCAA AC RSP00872 Mean Expected Number 0.005 +strand -112 : -103 TGTGTGACAa AC RSP01058 Mean Expected Number 0.008 -strand -51 : -58 TAGTGGAT AC RSP01602 Mean Expected Number 0.006 +strand -4 : +4 TCTCAATC AC RSP01633 Mean Expected Number 0.002 +strand -68 : -58 CTCTAACGCAA AC RSP01636 Mean Expected Number 0.002 +strand -68 : -58 CTCTAACGCAA Totally 7 motifs of 7 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: mitochondrial substrate carrier family protein |LOCUS: AT3G20240 |PROD: the same as GENE |7057023..7058897 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +175 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.29 C - 0.16 1 ggtgaaccgg atcgaatcgt caaccccaaa cgcccggtta cgagttataa 51 agatattttg gagaaataaa gggccaaaaa cgagcgtttt gattccataa 101 gtggggttgt aaataaatta ctagaaaATT GTtaaaataa aataaaaatt 151 gggagaaaca cataaaccct aaaaagctta aatctttctt cccataaatt 201 ATTAGTTTAT ACTCTTCTAG GTCTCTCTGT TCACAATCTG ATGGAAGTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -29 : -37 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -37 : -29 AAACCCTAA AC RSP00734 Mean Expected Number 0.002 -strand -110 : -117 CAAAACGC AC RSP01091 Mean Expected Number 0.005 -strand -103 : -113 ATgGAATCAAA AC RSP01303 Mean Expected Number 0.004 +strand -38 : -29 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -38 : -29 TaAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATERF-7/ATERF7 |LOCUS: AT3G20310 |PROD: ethylene-responsive element-binding family protein |complement(7084812..7086811) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.35 C - 0.17 1 ggtcggtctt gtgggtcggg cgtgaaggta gagaaaaaat cgaaattaac 51 aaccaaaaaa aaaaagaaaa gaaaaagcta ttccaaccat aaattattat 101 tttaattaat ttattaaatg aaaattcttt gagtaaatta tttagaaaaa 151 aaaaaagaga attataataa taatttccaa tctctaccct ttgttccttc 201 ATCTTCTTCC TCATCTTTCT TCTCTCTTCA ACATTTTCTT CTCTTCTTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00422 Mean Expected Number 0.007 -strand -194 : -199 ACCGAC AC RSP00445 Mean Expected Number 0.001 +strand -50 : -41 AAAAAAGAGA AC RSP00990 Mean Expected Number 0.010 -strand -180 : -184 GCCCG Totally 3 motifs of 3 different REs have been found Description of REs found 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 911. Group TF: p33TCP20 /AC: RSP00990//OS: Arabidopsis thaliana /GENE: CYCB1;1/RE: p33TCP20 BS1 /TF: p33TCP20 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: mce-related family protein |LOCUS: AT3G20320 |PROD: the same as GENE |complement(7087479..7089868) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +222 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.36 C - 0.21 1 gttcactttc gctgtatatt tttctgatta tcacggaaat gcccttgctt 51 ccttccaaat tggcttaaga ttaactgatt aagcctttac attttcgaaa 101 ttaggtgatt aataaattac ttaattaatt atgattaatg ataatcacat 151 gggattttcc gtcttttctc tttaccgtct aaatcccaac aacaaagcct 201 TTGGAGAAGC TATTCTCAGA TTCACGACAC CAGTTCGTCA CAAGCTTCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01529 Mean Expected Number 0.002 +strand -154 : -144 GCTtCCTTCCA Totally 1 motifs of 1 different REs have been found Description of REs found 1376. Group RE: Box I /AC: RSP01529//OS: Pisum sativum /GENE: PsCHS3/RE: Box I /TF: unknown ||Identical REs AC: RSP01530 RSP01531 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: endoribonuclease L-PSP family protein |LOCUS: AT3G20390 |PROD: the same as GENE |complement(7109955..7111830) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.24 C - 0.19 1 cataacaata tgttgtggat aaacttcaca aagctatgga ccgacatgac 51 ccaacgggtc caaattttta aaatttgcaa tccaactaaa ctacacaaaa 101 ataaaaatta aattctcagt aatatatgta cctaactaag ggtaaagtgg 151 gaaatacaaa aaaacatttc gaagagaagg aagaagacaa aagaagaagc 201 ACGAGAATCA TCTGCTTAAA ATCCAATCGC ATCGACTCAG TCTTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.009 -strand -180 : -186 TATCCAC AC RSP01046 Mean Expected Number 0.002 +strand -123 : -115 CAATCCAAC AC RSP01767 Mean Expected Number 0.006 -strand -131 : -139 TAAAAATTT Totally 3 motifs of 3 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: tetraacyldisaccharide 4'-kinase family protein |LOCUS: AT3G20480 |PROD: the same as GENE |complement(7151433..7153398) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.21 T - 0.27 C - 0.15 1 agcacagatt tttatatcca atttagtctg aaataaagtt taagaatatg 51 atccatgaga tcgatctcac aaagtttgct tattttacca atggttaaac 101 cgaaagactg aatttgaact aaaaacggtt ggccaacgaa caaatttaca 151 tacagtacac agtagttgaa atcgcagagt cagaatctcg tacagtaagt 201 AGTTGCAGAG TCAGAATTTG CATATGGAGA AGCTGAGGAA GGTGGTGAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.001 -strand -103 : -113 tTAACCATTGG AC RSP01604 Mean Expected Number 0.004 -strand -38 : -45 ACTGTGTA Totally 2 motifs of 2 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G20810 |PROD: the same as GENE |7275680..7278385 |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.39 C - 0.13 1 tcagagcata aatttaggtt tattctatgt tgaaaatagt attttgattt 51 tttttattct atgggtttat gaaaagattt atccaaaata gaaagaaata 101 aacaagagga gtggttgaat aaATTGTact attttggagg gttcgttttc 151 aaaattagaa agaatacagt tatagatacg aaaaatatct gatcctaatc 201 ATCACTTCAA AATATCTTTC TTTCCCTTTC CACTTTTTCG CTTACACTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.003 +strand -111 : -103 AGAAAGAAA Totally 1 motifs of 1 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: arabinogalactan-protein, putative (AGP) |LOCUS: AT3G20865 |PROD: the same as GENE |complement(7308510..7308968) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.31 C - 0.20 1 ttttattctg agaccaattc aaacttatca gaaaaattac agctctagtt 51 tattattgcc atgaatttat tcctaaattt agtaaaaaaa aatagaaaat 101 tctttgaatt ctcctgtttt gcataTCAAT ggcagagctt gaaactctct 151 ctacatttta ttatagtata tattccttcc ccaccttcac cttcaaatgc 201 ATCACAACCA AAAATACAAA ACAACAACCA AAAAACAAAA AACCAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.009 +strand -131 : -116 TTcCTAAATTTAGTAA AC RSP00085 Mean Expected Number 0.009 -strand -116 : -131 TTACTAAATTTAGgAA AC RSP00574 Mean Expected Number 0.004 -strand -191 : -198 CAGAATAA Totally 3 motifs of 2 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: similar to translocation protein sec62 |LOCUS: AT3G20920 |PROD: the same as GENE |complement(7328141..7330757) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.30 C - 0.15 1 tgagaaaaat gaaatacttt ttagattcca aaattttcaa agttagtcta 51 cgttatttta atagcacttg gtaataaatc taggttagtt aaccggtcta 101 ctataaaccg gtattGCAAT cttaactcta cgggtttacc caaaaaacca 151 gaattttttt ttttgttctg ttataacaaa acaaaaaaca ttggatctgt 201 AAAAGAAAAA TCGAAAAAAA AAAACTCTCC GACTCGGAAG AAGAGGGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00354 Mean Expected Number 0.004 -strand -146 : -153 TAACGTAG AC RSP00355 Mean Expected Number 0.006 -strand -28 : -35 TAACAGAA AC RSP01600 Mean Expected Number 0.010 +strand -166 : -159 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT3G20930 |PROD: the same as GENE |7331731..7334034 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.33 C - 0.22 1 gctttcactt gattagaatt ttacttttta acgggccaat tcatgtccaa 51 attataggcc ttttaacggc ctatactttt tgatatgctt agctttttta 101 cttatccact ccaaattccc aaaaagcccc tgagtttttc ggattttaca 151 ttttctacca gagtggagaa aaaaaacaga gaagaggaaa caaagcaagc 201 AAAAAAGAGT TGCCATGGAA GCTCTTATTG CTTCCACTTC CTTCTTCGTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 -strand -172 : -183 AAAAAGTAAAAt AC RSP00160 Mean Expected Number 0.001 +strand -60 : -49 GGATTTTACAtT AC RSP00405 Mean Expected Number 0.006 -strand -86 : -93 TTTGGAGT AC RSP00445 Mean Expected Number 0.007 +strand +1 : +10 AAAAAAGAGt AC RSP00447 Mean Expected Number 0.004 +strand -12 : -3 AaCAAAGCAA Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ZML1 |LOCUS: AT3G21175 |PROD: zinc finger (GATA type) family protein |7422042..7424895 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +796 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.22 C - 0.20 1 tgtgtatctt gatcaaacct gaaaccacta aagaaaaaca tatgaactca 51 aatagaggcc aattaaagat gaggtccaaa gaatagggag tgtcaagcct 101 ttcacaaaga cgacgccgtt tggctaaaaa aggcccaaga tcacaacgac 151 gacgtttgct gaagaaaaat gaaaaatctt tcactacaat cattagacca 201 AAAAAGAAAA AAAAAATCAA AGGAGCTTCC TTTTTTCGCT CTCGTCTCCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.001 +strand +29 : +38 CCTTTTTTCG AC RSP01205 Mean Expected Number 0.009 -strand -68 : -77 CCTTTTTTAG Totally 2 motifs of 2 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ACA9 |LOCUS: AT3G21180 |PROD: calcium-transporting ATPase, plasma membrane-type |7425525..7432204 |SUPPORT | 32 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +251 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.35 C - 0.19 1 ttcttcttac ccggaaaaaa ctctttcttc ttctctttcc cataaaaaga 51 aacaaaaaaa aactaacttc ccacaaattt tgccaaacca aaccaaaaat 101 agtaatgatc tcatTCAATt tgaaccctct ctccattttc tttcatagtt 151 tttttttagg gtaaatcaaa atattaatgt tggttagaaa ctcaaaaatt 201 AGTTTCTCTT TTTTTTCTCT GTGATTGACA GAGAGGTAAG AGAAAAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.004 +strand -20 : -14 TGGTTAG AC RSP00260 Mean Expected Number 0.004 +strand -46 : -40 TTTAGGG AC RSP00445 Mean Expected Number 0.002 -strand +14 : +5 AAAAAAGAGA AC RSP01013 Mean Expected Number 0.007 -strand -62 : -71 aAAATGGAGA AC RSP01209 Mean Expected Number 0.008 -strand -99 : -108 CTATTTTTGG AC RSP01209 Mean Expected Number 0.008 -strand -152 : -161 CTTTTTATGG Totally 6 motifs of 5 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: mitochondrial substrate carrier family protein |LOCUS: AT3G21390 |PROD: the same as GENE |7531408..7534544 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +569 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.36 C - 0.13 1 aagaatactg cccaattcat cataaactat taaattaaca taaattatgt 51 ataaaactag agaaaacctt atgaaataga ataaaaataa aagcctaaaa 101 catcttatat attataaaag ccttaagtat aaagctaaag agaaactgca 151 aatttgaggt caatactttt acaacctttt tgtgtagaac cacaaatttt 201 AAAGTTTTTG TTTTTATAGT GTTATTGCTT TCTTATTAGA CCTTTTTTTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxidoreductase |LOCUS: AT3G21420 |PROD: the same as GENE |7541509..7543524 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.10 T - 0.22 C - 0.23 1 aataataaca ttagacactt aacaacggtt gattctctgg tattaatgaa 51 aaaagaattt cgaaagtgca caaaatggac cccaaactcc acaaaacctg 101 caacacacTC AATtatacgc acaacatgca aacaataata aacatcactg 151 accatccaag tatttcttct atatatgtag actctcactc ttttacgact 201 CAAAGAGCAA AGAGCTAAAG TCCAAAACCA AACACAAAAA CAAAAATCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.003 +strand -175 : -170 CGGTTG AC RSP01237 Mean Expected Number 0.007 +strand -34 : -25 tTCTATATAT Totally 2 motifs of 2 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PAC1 |LOCUS: AT3G22110 |PROD: 20S proteasome alpha subunit C (PAC1) (PRC9) |complement(7792645..7794161) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +583 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.32 C - 0.17 1 aaaaaaaaaa atcagcatat gacaacaaaa attaagatat atcagagatt 51 ccgagttatg gatcttgcat tgggcttgat tatataattt gggccttttc 101 ttatccataa attacacttt tgggcctaat ctgtaaagca caaaaaaaaa 151 acaccttttt tttttctttt ctttctggct tgtcgaacag ttcacatctc 201 AGAGCTCATA AATTTTGTGG AGAGCAAAGT TCTCAGCAAA ATCAAAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 +strand -88 : -78 TACACTTTTGG AC RSP00860 Mean Expected Number 0.002 -strand -25 : -33 AGAAAGAAA AC RSP01621 Mean Expected Number 0.009 +strand -88 : -79 TACACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: VQ motif-containing protein |LOCUS: AT3G22160 |PROD: the same as GENE |complement(7817864..7818992) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +259 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.33 C - 0.14 1 agctttgtga cgattatgta aagtgaggga cttgttaagt atttcaacaa 51 aagcatacaa atacagtgaa atgggccaat ttcgtcaact tgttgggaaa 101 gtagCCAATa ccaaactaaa ctctagttta ttggtaagac tcaactaatt 151 gtaacttcgt gaggtctatt attttattat tttccaaatc atgatattat 201 CGAATCAAAT TAAACATTGT ATTAATAAAG TACGTAAAAT AGTTACAACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00869 Mean Expected Number 0.002 +strand -184 : -176 TGTAAAGTG Totally 1 motifs of 1 different REs have been found Description of REs found 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L27 (RPL27B) |LOCUS: AT3G22230 |PROD: the same as GENE |complement(7843974..7844604) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.31 C - 0.15 1 agttttgtaa aacaaaacat ataaaacgat gtccaaacaa aacatataaa 51 atggtgttca aaaaaatatt ttcgaatttg gtggtttcag ggcctaaaac 101 gatataagaa acttacatgg gccttttagg atcatctcat tttaatgggc 151 cgaattcgat attgaaataa aacaaattag ggttttactc agcacactat 201 ATAAAGACAA TCATCTCTTC AATTAGGGTT TCTTCTTTGC GGTGGTGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -24 : -16 TTAGGGTTT AC RSP00279 Mean Expected Number 0.001 +strand +23 : +31 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +31 : +23 AAACCCTAA AC RSP00369 Mean Expected Number 0.001 -strand -16 : -24 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 -strand +32 : +23 gAAACCCTAA AC RSP01303 Mean Expected Number 0.003 -strand -15 : -24 aAAACCCTAA AC RSP01678 Mean Expected Number 0.009 +strand -142 : -131 CAAaAAAATATT Totally 7 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: OTU-like cysteine protease family protein |LOCUS: AT3G22260 |PROD: the same as GENE |7870899..7873572 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +597 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.16 T - 0.24 C - 0.14 1 tttaaggtcg tttcttttgc agaaaaaaat aaaatacact aataattaaa 51 gcaataatat ttttctgaca aacaaataaa aaaggattac tgaaattaat 101 tagaaaacgc ggaaaaaata attaaaacga cacgcaacgg tgacgttttc 151 tttgacccgc caaagaagaa gaagaaaaaa aagaagtctt gaggaaatct 201 GACGAAGAAG AAAACATCTC TGAGACCGAC GAAACGAAAG TATCCATTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.005 -strand -44 : -50 GGTCAAA AC RSP00877 Mean Expected Number 0.000 +strand -45 : -37 CCCGCCAAA AC RSP00961 Mean Expected Number 0.001 -strand -180 : -187 TGCAAAAG AC RSP01654 Mean Expected Number 0.004 +strand -62 : -53 GGTGACGTTT Totally 4 motifs of 4 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RPS10 |LOCUS: AT3G22300 |PROD: 40S ribosomal protein S10, mitochondrial (RPS10) |7885675..7886827 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.14 T - 0.39 C - 0.23 1 ctctggttaa actagtagag ttaatttgta atttttattc accttgcttc 51 ctgggatttt aacatttttg catcttttca cttgtctcag taaaaaaaca 101 aaattatact gtagctcacc gtaagataac gtacactcgt cacaggtgat 151 cctgtcctca caattctctc tgatttcgct tactctttca ctgaaaccct 201 AATTTGGGGT TTTTCAGATT TCCTTCAATC TCTCGTCGTC ATTTCTTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +2 : -7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -7 : +2 AAACCCTAA AC RSP00741 Mean Expected Number 0.010 -strand -133 : -144 AAAAtGTTAAAA AC RSP01303 Mean Expected Number 0.003 +strand -8 : +2 gAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATRPABC24.3 |LOCUS: AT3G22320 |PROD: DNA-directed RNA polymerase, putative |complement(7890893..7892330) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +229 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.29 C - 0.13 1 taataagttg agaaaaatca actaaagggt ttaagtatgt tgggtcgtac 51 aagcccattg ggcctttatc aggctattaa ggattggagt ttaaatatcg 101 aaaataaagt tgagggttaa aacataaagt cggtataaAT TGGgagtttc 151 aaatgcaata aaagcttcaa tataatagaa ttgagaaaag ggttcgaggt 201 AAAAGGAGAA AGCTTGAAAC GCCGCTTCTT CTTCTTCTTC TTCCACTGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01339 Mean Expected Number 0.001 -strand -66 : -74 TACCGACTT Totally 1 motifs of 1 different REs have been found Description of REs found 1224. Group RE: DR1 /AC: RSP01339//OS: Arabidopsis thaliana /GENE: rd17/RE: DR1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: imidazoleglycerol-phosphate dehydratase 1 (IGPD1) |LOCUS: AT3G22425 |PROD: the same as GENE |7951062..7953230 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.35 C - 0.16 1 atattatata aattaattaa ttatctagtc aatgtatggt ttggtcttag 51 ttgatgcatg gttgatgtct tggaccggtt ataataacca aactaaatca 101 aaatttcagt tacttaaccg aaagtagtca aattatttgt cggttataat 151 gtaccggttc ggttcggtta taagtaagat tctgcattag ctcgagattc 201 CATTAGCTCA AGGAGAATCA AAGCGTCGTC TCTTGTTCCT TCCGCTGCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 -strand -93 : -103 TGAAATTtTGA AC RSP00333 Mean Expected Number 0.002 -strand -162 : -170 CCATACATT AC RSP01031 Mean Expected Number 0.009 -strand -18 : -25 AGAATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: prefoldin-related KE2 family protein |LOCUS: AT3G22480 |PROD: the same as GENE |7968102..7969636 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +985 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.35 C - 0.18 1 ttcgatttag aggaatcaat ctctgtatca tcttcttcaa tgaatgaatc 51 gttggtcctt tgtgctgtgt gagagagaag agaagaagaa ggaaatgaaa 101 attccggttt tgattcattc atatatttaa acccggtTCA ATgttttgat 151 ttaaaaatca aagcggtttt aattgggaaa ggtacgagtt aaacccaacc 201 TTGTTTCTTC ATCTTCCTCA CTCTCTGCGC CGCGTTTGCT TCCATCGTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.002 +strand +28 : +34 CGCCGCG AC RSP00230 Mean Expected Number 0.006 +strand -9 : +1 AACCcAACCT AC RSP00698 Mean Expected Number 0.004 +strand -160 : -150 TGAATgAATCG AC RSP00735 Mean Expected Number 0.006 +strand -48 : -41 AAAAATCA AC RSP01345 Mean Expected Number 0.000 +strand -10 : +1 AAACCCAACCT AC RSP01347 Mean Expected Number 0.000 +strand -10 : +1 AAACCCAACCT AC RSP01463 Mean Expected Number 0.002 +strand -84 : -72 ATTcATATATTTA Totally 7 motifs of 7 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 1228. Group RE: IMH2 /AC: RSP01345//OS: Cucumis sativus /GENE: ms/RE: IMH2 /TF: unknown 1230. Group RE: IMH2 /AC: RSP01347//OS: Cucumis sativus /GENE: ICL/RE: IMH2 /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G22530 |PROD: the same as GENE |complement(7977611..7978642) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +265 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.17 1 caaaatggtc aagtcaacga aacttgacat ttttttaaaa aagtcaaacg 51 aaactttgtg aattaaatga catttcgaaa gttcatgctt ttttcgtccc 101 aaatttgaaa gttcgcgctt tttttgacat tttccccgaa ataaatcgca 151 taatccaact ttgaaattaa aactgaagat gtaacaaaat acaattaaaa 201 AGAGGGGTAG TTTGGTAAAT TTTCAAATGC CCTTATCTCA TTTCCGATCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00314 Mean Expected Number 0.002 +strand -47 : -37 TCCAACTTtGA AC RSP00460 Mean Expected Number 0.005 -strand -125 : -134 GAaATGTCAT AC RSP00467 Mean Expected Number 0.002 +strand -195 : -186 TGGTCAAGTC AC RSP00550 Mean Expected Number 0.004 -strand -44 : -54 TGGATTATGcG AC RSP00917 Mean Expected Number 0.003 -strand -183 : -192 GTTGACtTGA AC RSP01458 Mean Expected Number 0.006 -strand +28 : +16 ATTTgAAAATTTA AC RSP01600 Mean Expected Number 0.010 -strand -35 : -42 TTTCAAAG Totally 7 motifs of 7 different REs have been found Description of REs found 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G22600 |PROD: the same as GENE |complement(8006521..8007478) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.22 C - 0.27 1 accgtcacaa agaccaccga ccccaaatat tacaaacgga ccagttctct 51 gttcacaaca caacactcat cattttgtcc gaatctgaac aaaacaaacc 101 aaaaactgtt agaaaagtag gaaagagttg gtcacccaaa ttaagccacc 151 tttgcttcct caattcctta tttataccat caaaagactc cacaatatcc 201 AAATCAAACA TAACAAAAAC CAACAAAACA AACTCAAAAG GATTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00930 Mean Expected Number 0.008 -strand -80 : -85 CCTACT Totally 1 motifs of 1 different REs have been found Description of REs found 859. Group RE: H-box II /AC: RSP00930//OS: French Phaseolus vulgaris /GENE: CHS/RE: H-box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G22990 |PROD: the same as GENE |8163965..8166352 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.33 C - 0.22 1 ccggaaccct gtaaaccaga gagacggttt agtgctctct tttaacaatt 51 ttaattatag tctcggactc ttcaaccgga ataaaccggt ctaaaacgtt 101 tttaattTCA ATtgtaccga aaccctctga ctcacaaaaa gtgtttagtg 151 ctctttaaac aattttaatt tttaaatcgt cttgggactt ttaaaccgga 201 ATAAATCTTT CGGGTCAAAA TTTCCGAACC CTAACTTTAG CCCCAAATTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01304 Mean Expected Number 0.004 +strand +25 : +34 cGAACCCTAA AC RSP01458 Mean Expected Number 0.002 -strand -24 : -36 ATTTAAAAATTaA Totally 2 motifs of 2 different REs have been found Description of REs found 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATERF1/ERF1 |LOCUS: AT3G23240 |PROD: |8295651..8296611 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.34 C - 0.20 1 aaatatgcaa aacgtctttg ctcgaatctt cgacgaagca acatagtttt 51 tcatttgagt gtaacattat ttttcgtaaa ttcccatttc acccttttat 101 tacatgacat ttgtctttca ctgagacagt aaaaactcaa gtctaatttg 151 gacatttgca tatacatact catttttttc tctatatata tagaccatgt 201 CAATCCACTA ACGATCCCTA ACCGAAAACA GAGTAGTCAA GAAACAGAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.007 +strand -167 : -158 CgAAGCAACA AC RSP01058 Mean Expected Number 0.009 -strand +10 : +3 TAGTGGAT AC RSP01237 Mean Expected Number 0.002 +strand -21 : -12 CTCTATATAT Totally 3 motifs of 3 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G23280 |PROD: the same as GENE |8321371..8324435 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.30 C - 0.15 1 agtatactga tcatgaaaaa aaactcacat atttttcaaa atggttaatg 51 aatggtttat aatatccaaa aaatcatctc caaaaaatag ttaaaggata 101 caaagatgaa atatcctaaa ctatagggag cattttataa aatccagtaa 151 actctataga aggaagaaac gtcaaacgtg aattacaaag ttgttgtttc 201 CTCTGAATTT CTCAGAACTC TTCTTTGCTA AGGAAAAATT AAATATCCAT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G23400 |PROD: the same as GENE |complement(8376454..8378307) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.34 C - 0.21 1 ttatatatgt gggtcttaat ctagtattat ctacatagat taaaatcaaa 51 gtactgcata tggtccataa taatacaacc aaagcaaatt aaaattttgt 101 ggcacaaaac gacatcattt tactcagaaa gtaatatGCA ATttcgttta 151 cgcacacacg tatacgcgct aataacccgt ggtgcttctc aaatcacata 201 ATAATTAAAG TCTTCTTCTT CTTCTTCTTC TCTACAAATT ATCTCACTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.005 +strand -49 : -40 GCACAcACGT AC RSP00447 Mean Expected Number 0.005 +strand -123 : -114 AcCAAAGCAA AC RSP00596 Mean Expected Number 0.008 -strand -98 : -103 GCCACA AC RSP01288 Mean Expected Number 0.005 -strand -38 : -45 ATACGTGT AC RSP01559 Mean Expected Number 0.009 +strand -37 : -32 ACGCGC AC RSP01711 Mean Expected Number 0.010 -strand -177 : -186 CTAGATTAAG Totally 6 motifs of 6 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: UBX domain-containing protein |LOCUS: AT3G23605 |PROD: the same as GENE |8476578..8477282 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.07 T - 0.24 C - 0.20 1 acaaacttac aattatcaaa aacaaaatct gtaattacac aaaaaaaaaa 51 aaggaaaata gaaacaaaaa aaaatccgca gaatatctcc aaaaatcaat 101 tctactaaca caaaaACAAT aatactaata aatctatttt tctattttca 151 aggaaaagga aacaaacctt tatagctcct ctctatcgtc tcgtctctat 201 AAATAAACGA GAAGCTCACA AATTCCACAA AAATCCACTC TAACTATGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.005 -strand -42 : -48 CCTTTTC AC RSP00559 Mean Expected Number 0.010 -strand -162 : -172 TGTAATTaCAG AC RSP01546 Mean Expected Number 0.009 -strand -7 : -12 ACGAGA Totally 3 motifs of 3 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 1388. Group RE: DRE1 /AC: RSP01546//OS: Sorghum bicolor; Sorghum vulgare /GENE: Sbdhn2/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: brix domain-containing protein |LOCUS: AT3G23620 |PROD: the same as GENE |8480076..8482164 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.33 C - 0.17 1 tgtgtaaaag ttcatgggct gtcattgttt aatttgagcc cgtatagttt 51 aaacagttca tggaccttgt gaaacattgg gttttatagt caataaaaaa 101 ctgtggggtg atttaggaca gacttataag gttaggggtc atattagaat 151 tctcttaaag ttgcttccaa ttgtgaggag gcactaaaac cctagactcc 201 ATATCAATCA ATCGAAAAAC CTTTCTCTCT TCTTTCGGAG CCGTCGCTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 +strand -198 : -191 TGTAAAAG AC RSP00653 Mean Expected Number 0.002 +strand +23 : +33 TTCTCTCTtCT Totally 2 motifs of 2 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G23760 |PROD: the same as GENE |complement(8562836..8564677) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.41 C - 0.15 1 atccattatc taatattttt tttcttactt caaaattttg cattgcatat 51 tatctttaca tctacaccta aatttttact taattttttt ctattggtat 101 caaattttat ttaaagtata gtataaaata tttgtattta ataaaatata 151 ttccaccgtg gaaagatata tgaatgataa cgttacagtg agttaatatc 201 ATTTATCTGA ACCAGAACTC ATCAAGCGAC ATGGTCTTAA AACCAATCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00206 Mean Expected Number 0.000 +strand -13 : -2 GTGAGtTAATAT AC RSP00377 Mean Expected Number 0.002 +strand +41 : +50 AACCAATCCa AC RSP00940 Mean Expected Number 0.002 -strand -38 : -47 TTCcACGGTG AC RSP01054 Mean Expected Number 0.003 +strand -22 : -12 AACGTTACAGT Totally 4 motifs of 4 different REs have been found Description of REs found 199. Group TF: GT-1 /AC: RSP00206//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II* /TF: GT-1 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycosyl hydrolase family 17 protein |LOCUS: AT3G23770 |PROD: the same as GENE |8565501..8567500 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.07 T - 0.31 C - 0.27 1 accaaccaac taaccagtct tctttaacct ttcattaacg acactaatta 51 aaaaagaaac accaaagcac tgtgagagtt caagaagcaa ttaatagttt 101 gagctaaaag cttttcttgc atgaacgata ttatactaat ccttaaacac 151 acttccttaa tctcttctta aatactcctc aacaagctct cttctccttt 201 ATCCCAAATC ACACTCACCA CTCTCTCTTC TCAACATTTT TCTCCAACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.003 -strand -78 : -84 CATGCAA AC RSP00445 Mean Expected Number 0.006 +strand -151 : -142 AAAAAAGAaA AC RSP00530 Mean Expected Number 0.001 -strand -144 : -155 TCTTTTTTAAtT Totally 3 motifs of 3 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RALFL24 |LOCUS: AT3G23805 |PROD: rapid alkalinization factor (RALF) family protein |8586389..8587063 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.29 C - 0.16 1 aacttataaa caaacaaaaa acattgcagt tggaaagaaa acaacaatta 51 atcgtggatt ctcaaaggaa ccaagtgttt gttagtggac cacaataaat 101 attttttaaa atggataaga acCCAATgaa aaaaatagtt ttatttaaat 151 taaatacttt atgttacaaa ttctgttgaa actctctatc aatccaactt 201 AAACCGACCG GTTTAACTCC CAAGAGCTAC TTGGAGTTGT CGTAAACACA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.009 -strand -118 : -124 AACAAAC AC RSP01046 Mean Expected Number 0.001 +strand -11 : -3 CAATCCAAC Totally 2 motifs of 2 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GATA transcription factor 1 (GATA-1) |LOCUS: AT3G24050 |PROD: the same as GENE |8685929..8687684 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.31 C - 0.20 1 tcacaccatt caatcacgcc gttgattttg gtgactaata ttaaactcag 51 tggaccgcgt tacacttgat tgtggcttca atatacgtta taggaaaaag 101 tgaatttaaa aggcaaagga aaaaaaccat tttgtgtcat ccccttcccc 151 acttccaacc aaaattaatt taaaatgtca aatatttttt cattttcctc 201 TTTTCGAAAT TAAAGAAAAC CCTAAACGCC GTTGTCTGAT ATTGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +25 : +17 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +17 : +25 AAACCCTAA AC RSP01303 Mean Expected Number 0.006 +strand +16 : +25 aAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PMP |LOCUS: AT3G24160 |PROD: expressed protein |8726138..8729396 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.41 C - 0.18 1 attcgggacc gcttctttaa aaacgaacca gttttgtgat ttgtctatta 51 tacccctatt tgtactaact gtcgtttttt tttttttttt tgtcggcaac 101 tgtcgtttaa tatggctttt tactaaaccg gaATTGAaat aaccgggttt 151 tgaacagata atattaattt caaacgacac cgttttggag ttgtgtctaa 201 CACTTTGATT GATTCTGAAA TCTGGATTCG TCTCCTCCAT TAAACATCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 +strand -29 : -16 AAACGACACCGTTT AC RSP00405 Mean Expected Number 0.007 +strand -17 : -10 TTTGGAGT AC RSP00431 Mean Expected Number 0.001 -strand -94 : -105 AACGACAGTTGC AC RSP00431 Mean Expected Number 0.001 -strand -125 : -136 AACGACAGTTAG Totally 4 motifs of 3 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: HCF101 |LOCUS: AT3G24430 |PROD: expressed protein |complement(8868590..8872208) |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.36 C - 0.14 1 cttttgtaga attcaacata catcagtaaa aacttaattt tgatttatct 51 tagatgtaat ttgacacaca tcagtaaaaa aaacaataat atctgattac 101 aaatgtaaaa atttatgata tATTGAataa taataataaa aataataaaa 151 agctttgaaa aagttttatc ttttaaagag ttgagcgatc aaattatcac 201 AGACCGCTAG TTTTTTTTGC CACTCTCTTC GTCTCTCTCT TGTAGCAATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00130 Mean Expected Number 0.001 +strand -69 : -50 AATAATAAaAATAATAAAaA AC RSP00140 Mean Expected Number 0.009 -strand -54 : -66 TATTATTTTTATT AC RSP00747 Mean Expected Number 0.002 +strand -180 : -169 CATCAGTAAAaA AC RSP00747 Mean Expected Number 0.002 +strand -132 : -121 CATCAGTAAAaA AC RSP00864 Mean Expected Number 0.001 -strand +40 : +32 AGAGAGAGA Totally 5 motifs of 4 different REs have been found Description of REs found 128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: copper-binding family protein |LOCUS: AT3G24450 |PROD: the same as GENE |complement(8880075..8881729) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.36 C - 0.18 1 ttaaagagga agaaaaatgc caaaagtaac atagatctaa tgatagattt 51 aacatattag tttatgaagt gaagataaat aaataaaact attgtaaatt 101 catcggtctc tacaatatca ttTCAATgtt tgacttattc acacaccttg 151 cttctctctc catctcttta agacagtgta agtgtgtaat acaagcaagt 201 ATTTCTCTTA CATATTCTCT CATTTCTCAC CCAACTTCTC CTTTTTATTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.003 +strand -49 : -39 TTCTCTCTCCa AC RSP00865 Mean Expected Number 0.001 -strand -40 : -48 GGAGAGAGA AC RSP01056 Mean Expected Number 0.005 -strand -168 : -178 tATGTTACTTT Totally 3 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G24506 |PROD: the same as GENE |complement(8928177..8929336) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.13 T - 0.35 C - 0.08 1 aaaatattta aaactcaaaa ttttgtatca tatattcaat ataaaaattt 51 tgattcgggt ttcagatttc ttaatctaaa tttaatttaa tttaatttat 101 tataagaatg tctaaagtaa atggaatgaa ttataaaata acataaataa 151 aaaattgata attttgattt attttaaaag tataaagaaa ataatatgaa 201 CTGTTTGACG GAACAGATAG GAACCATCGA AGAACACGAG GCGGAGCTAT 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G24530 |PROD: the same as GENE |complement(8945432..8947933) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.23 T - 0.25 C - 0.15 1 tgtaatagtg attatatgat taggttaatc aatgaaataa tggggcaacc 51 aaagcttagc tgggtttagg aagacgccag gaaagtaaaa aaacataaaa 101 agtcaggtag gggtaaatta gtcttttcaa ataccatgaa gaaagaagag 151 acgccaaaga aaagactagt gacgaaagag gaagacgcgg aggtactctc 201 ATTCTCTAAT CTATTTCTTC GATAGTGTTG ATTCTCCGCA AAATCCTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.007 -strand -64 : -71 ATGGTATT AC RSP01599 Mean Expected Number 0.007 +strand -76 : -69 TTTCAAAT Totally 2 motifs of 2 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase family protein |LOCUS: AT3G24550 |PROD: the same as GENE |8960265..8963575 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.32 C - 0.18 1 attaattctt atttctacat tcaattaaaa acataccaaa acatctatta 51 acttcttaaa tattttttct caaatttgta gtccaaaaaa aacacgacgc 101 gtatgttttt tttgttgttg ttgtgtaata agaagagaaa gaacgtaaaa 151 gaattgacgc ggacgaatcg tgttagaccc aaaaagaaca gctttcaatt 201 CCATTGTCCA AATTCCTTAT CAAAAAAAAA CTCTACTCTC GGTGGCACCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.004 -strand +43 : +37 ACCGAGA AC RSP01195 Mean Expected Number 0.001 +strand -142 : -130 AATATTTTTTCTc AC RSP01733 Mean Expected Number 0.007 -strand -39 : -44 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CLE41 |LOCUS: AT3G24770 |PROD: CLE41, putative, CLAVATA/ESR-Related 41 (CLE41) |9046540..9047470 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +246 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.40 C - 0.18 1 ctaagtagta actctattcc aaagaaaatt aggaaattgt tttgtcacgc 51 gttattcaaa ccctagtctg aatgcactat atatgtccat tctctccagg 101 cgatgcttgc ataaaagggt acttttggta attttataac ttgtgacttt 151 tttttgtata cacatcttta acatacgttg ttttgtttac tttattaatc 201 AAATTAACGA GTGTGAAAAA TTGAAAACCT CTCTCTTTCT CATTTTCCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.006 -strand +40 : +32 AGAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: BSD domain-containing protein |LOCUS: AT3G24820 |PROD: the same as GENE |complement(9062373..9064385) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.34 C - 0.21 1 gctcttcgaa aagatctcag cttcacttca atggcgactt tatatatgat 51 gcgacattag ggttaagagt tctctaaacc ctaatttatt gggccttttg 101 ttattataat aaggcccagt agcccagtaa caggccatgc ccaggcccat 151 tttttctact ttctaaggca ttggagattt tcagattctt cttcttcttc 201 ACAGGATCAG CAATGAATAT AGCTTCGAGG ATTCGACGAA GTTTTTTAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -117 : -125 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -125 : -117 AAACCCTAA AC RSP01237 Mean Expected Number 0.009 +strand -163 : -154 CTtTATATAT AC RSP01303 Mean Expected Number 0.003 +strand -126 : -117 TAAACCCTAA AC RSP01303 Mean Expected Number 0.004 -strand -135 : -144 TtAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -126 : -117 TaAACCCTAA AC RSP01304 Mean Expected Number 0.003 -strand -135 : -144 TtAACCCTAA Totally 7 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G25120 |PROD: the same as GENE |complement(9149551..9151112) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.29 C - 0.16 1 aacagaggaa aatttaattc caaagaaaat ctctcctgag aggtgaaggg 51 ccaaatatct atttgtcaaa cattgaggga ataaaataaa ctttaaatca 101 tctttcaggG CAATttctta attatgtaag agttatgatc gggtttcgag 151 ttagggttca atctcgggtt ttagatcaac ccgattcaca acaccgcatt 201 GAAATTGGAG TTCTCTCGAA GTTCCGTGGC GTCAAAAATG GCGTTGGGTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00996 Mean Expected Number 0.004 -strand -21 : -30 GTTGATCTAA AC RSP01303 Mean Expected Number 0.005 -strand -41 : -50 TgAACCCTAA AC RSP01304 Mean Expected Number 0.003 -strand -41 : -50 TGAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: bile acid:sodium symporter family protein |LOCUS: AT3G25410 |PROD: the same as GENE |complement(9215576..9217727) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.07 T - 0.29 C - 0.33 1 tcacccaaat tcatccaaat tcactcacac aaaactaagg cctacacaaa 51 accaacaatg ctagaaagag tcatcgacga tcacgtcgcc aaccaatctc 101 agccgtTCAA Ttttcttgca catcacttgt caatcatgcc taaacaaacc 151 ttaacaaatc tttccccttt atatatttcc aaattccaat tttctatatt 201 ATCGCTTCTT CCTCCTCCTG CTTCTTCAAC TCCAAACCTC ACCCTCTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.008 +strand -154 : -146 CAAAACCAA Totally 1 motifs of 1 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: bacterial hemolysin-related |LOCUS: AT3G25470 |PROD: the same as GENE |9234178..9236450 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.28 C - 0.14 1 tctagggtat tatgtttaat ttatgctgac tctttaatat atagacgaaa 51 aaataaagtt tttgatatcc aagtaaaaca ataaaaggta aagtaaaaca 101 aagctggttt gATTGAtgat caagtaaaaa aataaagaaa aacggaaacc 151 ctgtttctga gacagagtct tcgtttccac aaccctagaa caaaaaaagt 201 ATCCCATTTG TCATTTGTCA ATTGTCATTA GCAAGAACAG GAAGAAGATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.001 -strand -80 : -90 GATCATCaATC AC RSP01598 Mean Expected Number 0.004 +strand +9 : +16 TGTCATTT AC RSP01639 Mean Expected Number 0.006 +strand +20 : +29 AATTGTCATT Totally 3 motifs of 3 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: rhodanese-like domain-containing protein |LOCUS: AT3G25480 |PROD: the same as GENE |complement(9236435..9237844) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +9 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.10 T - 0.41 C - 0.18 1 tttcttttga atctaattta acattatttt caaaaaaaaa atatatatat 51 tcgtttttag aagagaatat ttggccactg tgtaatttat cttgtatttt 101 gattagattt atgttcaaga aaaaaaaaca aaatttgaca tatctATTGA 151 tttttttttc tttttgttct cttatcctct tcgcgcttcc acacgtcgtc 201 AAATTACCAA TGACGTCTCT TCCAATAATC CTCGCATCCT CTCCACTGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.001 +strand -11 : -4 CACACGTC AC RSP00572 Mean Expected Number 0.009 -strand -58 : -65 ATATGTCA AC RSP01604 Mean Expected Number 0.003 +strand -124 : -117 ACTGTGTA AC RSP01654 Mean Expected Number 0.002 +strand +9 : +18 AATGACGTCT Totally 4 motifs of 4 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G25870 |PROD: the same as GENE |complement(9464553..9465520) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.30 C - 0.24 1 aaaatataaa accaaataaa aataaaaacc agaaaaaaaa agaactagga 51 aaaaaaaaag tgaaagatct gtgatgccca aactattcgt tatacacgcg 101 ccaaagtctg cgtctgaaat cactcgcttt ctctttcgtt accgactttt 151 atatctgctt ctctttatat cttctctcca ctataaaatc tcgtgtttcc 201 CCTTCTTCCG ATTCTGTACC CATATCTCAC GCTTAATTAC AGTATTGCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.005 +strand -107 : -101 ACACGCG AC RSP00595 Mean Expected Number 0.002 +strand +31 : +39 GCTTAATTA AC RSP00876 Mean Expected Number 0.000 +strand -104 : -96 CGCGCCAAA AC RSP01339 Mean Expected Number 0.001 +strand -61 : -53 TACCGACTT AC RSP01499 Mean Expected Number 0.006 +strand -4 : +6 TTCCCCtTCT AC RSP01601 Mean Expected Number 0.005 -strand -136 : -143 TTTCACTT Totally 6 motifs of 6 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 812. Group TF: AtE2F /AC: RSP00876//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 1 E2F (D1) /TF: AtE2F 1224. Group RE: DR1 /AC: RSP01339//OS: Arabidopsis thaliana /GENE: rd17/RE: DR1 /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RPL15 |LOCUS: AT3G25920 |PROD: 50S ribosomal protein L15, chloroplast (CL15) |complement(9491321..9493855) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.33 C - 0.21 1 cttgatcatc ccgactaatt cagacatgag cttatctgaa aacccacttt 51 ggacacaaac gaattgatac gaacgagtaa cgactctttt attgaaaacg 101 aaaaggccta aatttgctgt gaaaggcCCA ATaaacaatt aagtgattat 151 gtaagacgat gtcgtttaac tcttaagttt ctcaagaaag ttatctctct 201 CTATCTATCT TCCTCAACCT TATCCTTGAA GCTTTGTTTC ATCTGTTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.007 -strand -59 : -69 tTAATTGTTTA AC RSP00254 Mean Expected Number 0.008 -strand -95 : -101 CCTTTTC AC RSP00680 Mean Expected Number 0.009 -strand -110 : -119 TAAaAGAGTC AC RSP00698 Mean Expected Number 0.005 -strand -179 : -189 TGAATTAgTCG AC RSP00864 Mean Expected Number 0.002 -strand +2 : -7 AGAGAGAGA AC RSP01030 Mean Expected Number 0.009 -strand -19 : -26 AGAAACTT Totally 6 motifs of 6 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G25940 |PROD: the same as GENE |9495934..9497329 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +407 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.29 C - 0.21 1 gtaactgccg gatacacgcc attgatgaca taaaacatta ttctctttgt 51 cggaattttt aatcataatt aaatatcatt agagagagtt ggtaaaagaa 101 aagacataat tagctaaacg ggctaaaatg aaaagttaat gggccaaaca 151 gacatatatc cagcccatta taatctctgc atctcctacc tctgaatccc 201 AAAAACCCTA GCGATTTTTT TCTTCTCTCC CGAGACGCTC TGTGATAGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.008 -strand -63 : -72 TAACTTTtCA Totally 1 motifs of 1 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CAAX amino terminal protease family protein |LOCUS: AT3G26085 |PROD: the same as GENE |9532006..9533850 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.35 C - 0.20 1 aaaagctcta aactttgaat tcggtacaga aaatcagaaa aggactcatg 51 tcctcttctt ttgaaatatg ttacaataaa aatttggttt catttcttct 101 tctttcttgg tgcgttttct ctgataaacg acgccgtatg aagctggcga 151 gacacagacc tctcatttcg acgctttctt cttcgtgaaa ctcttcattt 201 GTTTTATATT GGAAACAGAG TCTCTCTTAT GAATCAAAGC GACAAACTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.007 -strand -158 : -164 CCTTTTC AC RSP00680 Mean Expected Number 0.007 +strand +13 : +22 aAACAGAGTC AC RSP00750 Mean Expected Number 0.003 -strand -122 : -133 TTATTGTAAcAT AC RSP01013 Mean Expected Number 0.010 -strand +1 : -9 CAAATGaAGA AC RSP01014 Mean Expected Number 0.001 -strand +1 : -9 CAAATGAAGA AC RSP01767 Mean Expected Number 0.007 +strand -124 : -116 TAAAAATTT Totally 6 motifs of 6 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G26110 |PROD: the same as GENE |9542720..9543351 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.33 C - 0.15 1 aatcctattt ctcaaattgt ttttgctata tttgataaga ttagaattta 51 gaaaaagctt aattaggagt agaagataat atgtaatttg caattttttc 101 ctcaaccttt aatatttttg gcaaaacctc aaATTGCgtt gagtcatctt 151 agcactttga tcaaacaact atataagcaa agaccctcat tacacaattc 201 AAGATAAATA AATAAAACAA AATACCCATA AAACATTTTT CAAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.007 +strand -61 : -55 TGAGTCA AC RSP00595 Mean Expected Number 0.003 +strand -144 : -136 GCTTAATTA AC RSP00871 Mean Expected Number 0.001 +strand -63 : -54 GtTGAGTCAT AC RSP00943 Mean Expected Number 0.010 +strand -14 : -4 TCATTaCACAA AC RSP01093 Mean Expected Number 0.003 +strand -29 : -19 TaTAAGCAAAG AC RSP01103 Mean Expected Number 0.009 +strand -77 : -70 AAACCTCA AC RSP01596 Mean Expected Number 0.010 -strand -4 : -14 TTGTGtAATGA Totally 7 motifs of 7 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 20S proteasome beta subunit E, putative |LOCUS: AT3G26340 |PROD: the same as GENE |complement(9651659..9654134) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +325 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.26 C - 0.24 1 tgattaataa aaagttatat acctaatatt catataacca aggaaattaa 51 aaaaaaaaaa aaagaagaaa aggccaataa tggcccatga agcccaacat 101 aatgaacact gttctgtctt taaacttaag cggtatgacc cgaaatgatt 151 caacccgacc cgatcgccca tatcttgccc cgttcgcatt cggtttgccc 201 AGAGCTCAAG AAACATCCCT CCATAATTTG CTTCTCTTTT CTCCAATTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 -strand +42 : +33 AgAAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G26370 |PROD: the same as GENE |9657983..9661164 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.33 C - 0.16 1 aaatgagata aaaaccagag aatttactaa tataggggtg gttatgtaag 51 ttttatgaga tatagggatg tttttgtaaa tatccttaaa tctaatcttc 101 tgtttgattc agagagtATT GActttaaag aagaacattc aagcctttca 151 aaaaaaaaaa gcttctttaa tttctctctc tctctgtgga gtgttcgaat 201 CTCCAAGCTC TCTCTCAAAT GGCAGCGTCC ACATAGTAGA GCTGAAGAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand -16 : -24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -18 : -26 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -20 : -28 AGAGAGAGA AC RSP01006 Mean Expected Number 0.005 -strand -159 : -165 ACCACCC AC RSP01221 Mean Expected Number 0.003 -strand -157 : -164 TAACCACC Totally 5 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G26470 |PROD: the same as GENE |9687335..9688879 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.37 C - 0.23 1 aattaaaaat ttgtaaacaa gacaatatgc caaaataaaa tatacgtcta 51 ccttctcatt aatttccttg tttcttcttc attgaactct tgaacaaata 101 ttatatggag atgtcacttg tcacttcgag ttgctaggaa acttccaccg 151 gtgaattcct cctctataca gattaattag ttcatatccc cttgtctctc 201 AGCTCTCTAT CTCCACACTT TTTCTCTTTA ACATATCCTT TACTAAATGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -88 : -79 GtCACTTGTC AC RSP00681 Mean Expected Number 0.004 -strand -22 : -30 TAATTAATC Totally 2 motifs of 2 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MATE efflux family protein |LOCUS: AT3G26590 |PROD: the same as GENE |complement(9762938..9766552) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.09 T - 0.41 C - 0.21 1 aacacatgtg aatccatcca taatatatac cataatttga ttaatacaac 51 aatgattttg tctacattta gccattttat taaatgctag ttgctatatt 101 agctattttt tccttaatat cataaaaACA ATttttttgg tcgcacgtat 151 taacattttt tttcctatat aattcatgaa tgattaaacc caagatcctc 201 ACTCGTTGGT CCTTAGTCTT CGACCTCCTT TAATCTCTCC ATCTCTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01469 Mean Expected Number 0.004 -strand -190 : -199 TCACATGTGT Totally 1 motifs of 1 different REs have been found Description of REs found 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G26710 |PROD: the same as GENE |9814763..9815987 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.31 C - 0.14 1 agcttagaaa agaaattaca aaaccagaga ttgttgattc ttagttcata 51 catagaagaa agaaacagag ctaatgtttt gtcataaata ctaaaaaccg 101 ttaaaagtat atttttaaaa tgagaaaaaa tgtgagccat tcgatttttg 151 gatagaccca tcatgtaaag gtttaagctt tttttttgtt agccaaagag 201 AAAGCCTTTT TAGTTCTATT GACAATGGCG ACGAAGCTGA TTTCTCCGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.003 +strand -106 : -95 AAACCGtTAAAA AC RSP00860 Mean Expected Number 0.007 +strand -144 : -136 AGAAAGAAA AC RSP00881 Mean Expected Number 0.009 -strand -163 : -172 ATCAACAAtC Totally 3 motifs of 3 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oligopeptide transporter OPT family protein |LOCUS: AT3G27020 |PROD: the same as GENE |complement(9962556..9965834) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.28 C - 0.22 1 tagcaaaagg ataaatactc tgaagtctga aacactaaca aagaaaagaa 51 caaaaaacac atttatggtt atcaatccaa cagaaatatt tatcgctttg 101 atgtaacaag attaacgtaa cagactaaaa ttacacgtgt cactttctta 151 ttcgacctac tcaaaataca ttgcgtctaa tcttaagctt ttccataact 201 AACCTCCAAA ATCCGTCAAA CTCAACATTT TCTCTTCCGC CATAACCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.002 +strand -69 : -60 TaCACGTGTC AC RSP00524 Mean Expected Number 0.005 +strand -68 : -62 ACACGTG AC RSP00524 Mean Expected Number 0.004 -strand -61 : -67 ACACGTG AC RSP00559 Mean Expected Number 0.008 -strand -66 : -76 TGTAATTTtAG AC RSP01035 Mean Expected Number 0.004 +strand -66 : -60 ACGTGTC AC RSP01046 Mean Expected Number 0.004 +strand -128 : -120 CAATCCAAC AC RSP01256 Mean Expected Number 0.001 +strand -68 : -61 ACACGTGT AC RSP01256 Mean Expected Number 0.001 -strand -61 : -68 ACACGTGT Totally 8 motifs of 6 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peptidase M48 family protein, contains Pfam domain |LOCUS: AT3G27110 |PROD: the same as GENE |9999133..10001464 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.23 C - 0.21 1 atgttattga aaacttactt tctgctaata ttggaagccc attaaactaa 51 ggcccatgaa agaaaacacc cacaccgacg tcgtatagga aagatgtagt 101 catgtgaaga aaaaaaatta acggtcaacg ggaaaaggaa aacgatggcg 151 cgtcaaatgc taaaccatta aactacggtt gtggacggca aacgcttgtc 201 GTCTCCGAAA CGCAACCGCA GAGAACCCAA ATTTATATCA TTCTATATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.003 +strand -6 : +4 CTTGTCGTCt AC RSP01703 Mean Expected Number 0.001 +strand -126 : -117 CCGACGTCGT Totally 2 motifs of 2 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PUX1 |LOCUS: AT3G27310 |PROD: expressed protein |complement(10088438..10090338) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.21 T - 0.27 C - 0.14 1 cattttgttt aatagtttaa gtctttaaga cttgtggttt acttggggaa 51 aaattagata gaagaaagag gggtcaaaaa aatgaaaata agaaagaggg 101 cttatctgta aaaaaaacaa aacatactgt gcttaaATTG Aaaatcacct 151 aaaacaaaag cgcctccggt atatagacgg tggatttgca gcgagcaagt 201 AAAGAATAAC TTGAACCGGG TCTGATGTTT GTTGATGACC CTTCTCTACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.008 +strand -101 : -95 GCTTATC AC RSP00881 Mean Expected Number 0.008 -strand +36 : +27 ATCAACAAaC Totally 2 motifs of 2 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G27350 |PROD: the same as GENE |10127272..10129192 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +203 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.10 T - 0.44 C - 0.21 1 tttcttccca gttcttataa tttcattcct atcctcaaaa aaactctgaa 51 ttatttattt ttttcttcaa attagtattt gtgtgtttga ttttatcttg 101 ttcatctcct agttcgtggg acccagattc taaatatatt cttttgagat 151 cttctttttc ccccaccaca tgtgtttagc ttcttgagag aaataatctc 201 ACTTCTTTTC AACGACACAA CACAGAAACT ATTTTTTCCT TTCGAATTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.004 +strand -15 : -10 GAGAGA AC RSP01024 Mean Expected Number 0.009 +strand +24 : +30 AGAAACT AC RSP01435 Mean Expected Number 0.002 +strand -42 : -33 TCCCCCACCA AC RSP01469 Mean Expected Number 0.010 +strand -35 : -26 cCACATGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PBB1 |LOCUS: AT3G27430 |PROD: 20S proteasome beta subunit B (PBB1) |10153754..10156579 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +393 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.32 C - 0.18 1 tagccgtcga ttagttggga tgtatactta ttgggcctaa gaagcttaat 51 accttaattg tacaatcgga tggatatata aatgggctca acaacaagga 101 aaaaggccca tttaaaccta agagttcaag ctctatttgt agaaagacca 151 aagtatccct agatgtttaa gtatgtcctc tgtgtctcta aaggttaatt 201 GGGGAAGAAG AAAACTCTCC TTCTTTTTGT AACTTTTGCT TCACCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01003 Mean Expected Number 0.000 -strand -140 : -149 ACAATTAAGG AC RSP01640 Mean Expected Number 0.005 +strand -21 : -12 CTgTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G27520 |PROD: the same as GENE |10193659..10194736 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.36 C - 0.18 1 tgtgtgctat aataatgtta agaacggtat taaacggtgt gcttaataat 51 tggctttttt gtgggttaac ttatatttta cacgaatata ctattgggcc 101 ttaagtattt agttatcggc ccataagcat ttaacgataa cgggagtttg 151 gtgaatccga agctaatctc taaaatcttt cagtttcgag atccaaagtc 201 ACTCACTTTT TTCTGAAATT CGCTACTCAG AATTTTCCCG CTCCACTGCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.002 +strand +34 : +41 TTTCCCGC AC RSP00953 Mean Expected Number 0.005 -strand -149 : -157 CAATTATTA Totally 2 motifs of 2 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: glycine-rich protein / oleosin |LOCUS: AT3G27660 |PROD: the same as GENE |10244995..10246260 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.35 C - 0.20 1 tcgagaggag agcaattgta aaatgaatgt tttgtttgtt tttgtacggt 51 ggagagaaga acgaaaagat gatcaggtaa aaaatgaaac ttggaaatca 101 tgcaaagcca cacctctccc ttcaacacat tcttacgtgt cgtcttctct 151 tcactccata tctccttttt attaccaaca aatatatttc aatcccattt 201 ATATGTACGT TCTCGTAGAC TTATCTCTAT ATACCCCCTT TAATTTGTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.003 +strand -67 : -60 TACGTGTC AC RSP00247 Mean Expected Number 0.003 -strand -60 : -69 GaCACGTAAG AC RSP00940 Mean Expected Number 0.005 +strand -159 : -150 TTgTACGGTG AC RSP00943 Mean Expected Number 0.003 -strand -175 : -185 TCATTTtACAA AC RSP01035 Mean Expected Number 0.008 +strand -66 : -60 ACGTGTC AC RSP01174 Mean Expected Number 0.001 +strand -88 : -78 CCTCTCCCtTC AC RSP01261 Mean Expected Number 0.005 +strand -68 : -61 TTACGTGT AC RSP01596 Mean Expected Number 0.003 +strand -185 : -175 TTGTaAAATGA Totally 8 motifs of 8 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G27880 |PROD: the same as GENE |10339449..10340673 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +217 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.36 C - 0.17 1 tttatatttt atcaaagaat cttctacaat gattccagat attaaaaata 51 gtaataaaca tgaacttatt ttcgtagata ctacatcatt gtcaaatgat 101 ttgaatacat tttaaaaaat tactaccaaa acttgtggat caagtagcat 151 gattcgcttc tagaaaatcc acgttatgct tcttctctaa atcttttgat 201 ACAAATACAC AATTGAGTCA CATTAATAAC TATCTTACAC TTTAATTACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.006 +strand +14 : +20 TGAGTCA AC RSP00696 Mean Expected Number 0.001 -strand -108 : -120 GACAATGATgTAG AC RSP00892 Mean Expected Number 0.008 -strand -156 : -164 TTAATATCT AC RSP00943 Mean Expected Number 0.003 -strand -102 : -112 TCATTTgACAA AC RSP01031 Mean Expected Number 0.010 +strand -185 : -178 AGAATCTT AC RSP01275 Mean Expected Number 0.003 +strand -33 : -24 TCCACGTtAT AC RSP01596 Mean Expected Number 0.003 +strand -112 : -102 TTGTcAAATGA AC RSP01734 Mean Expected Number 0.005 +strand -33 : -27 TCCACGT Totally 8 motifs of 8 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 662. Group RE: Box I /AC: RSP00696//OS: Brassica oleracea /GENE: SLG13/RE: Box I /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: nodulin MtN21 family protein |LOCUS: AT3G28080 |PROD: the same as GENE |10452778..10456504 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.27 C - 0.22 1 aagtggtttc aatatccatt attggatgat catattttgg cacaactgtt 51 ttcaagtctg cgcaaagaat agggaatctt ataataaatt caagaaacaa 101 caattATTGG acccacaata caccacttcc cctctaacta gtactatcat 151 aaatgaaaag caaacaaatt aagcgataac aaatcaaaga ctcacatttc 201 AACACCAAAC CTTTCTACCA TTTCCAATGG CCGGAGCAGT AAGCCTTTGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00593 Mean Expected Number 0.002 +strand -127 : -119 GAATCTTAT AC RSP01032 Mean Expected Number 0.003 -strand -161 : -170 CCAAAATATG AC RSP01060 Mean Expected Number 0.005 +strand -100 : -92 CAATTATTG AC RSP01060 Mean Expected Number 0.005 -strand -92 : -100 CAATAATTG AC RSP01077 Mean Expected Number 0.002 -strand -92 : -100 CAATAATTG AC RSP01114 Mean Expected Number 0.009 -strand -161 : -167 CCAAAAT Totally 6 motifs of 5 different REs have been found Description of REs found 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: calmodulin-binding protein |LOCUS: AT3G28140 |PROD: the same as GENE |10471638..10472625 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.39 C - 0.15 1 aagccaaatt ctggaatgag aagagagata ggcgaagagc gtgttgttca 51 catagggtta taactggaat taatacagaa gatataaaga atatcacctt 101 cttttttgtt aggtgttagt tttctaattt atattttttt gtgtgtttct 151 tttgcaaatt tccctagatt ttaattggct taaaaaaaag ttgaatcttt 201 ATTACTTTGA AAAACTTCCC CTTTTCTCCT CCTCCATCAC TCTCAGGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.001 +strand -125 : -117 CAGAAGATA AC RSP00961 Mean Expected Number 0.006 -strand -45 : -52 TGCAAAAG AC RSP01162 Mean Expected Number 0.001 +strand -118 : -106 TATAAAGAATaTC AC RSP01600 Mean Expected Number 0.009 -strand +12 : +5 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CLE25 |LOCUS: AT3G28455 |PROD: CLE25, putative, CLAVATA3/ESR-Related 25 (CLE25) |complement(10671125..10672400) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +232 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.33 C - 0.22 1 taagggagct tgtgaggtcc ccaatggttt gctgcatgaa aattcacaaa 51 tcaaagcaaa gaaaaaggta ctcaacgggc ccatatgtta cataaagata 101 tgttttttct taactttcac ttgctcttgc ctcctctctc tctctctacg 151 tggacaccta cgtatgtata ttgttgcttt gtgttgcttc atctttaaat 201 AGGGCCAATC ACGGATTTGT CTTCCAAGGT ATATAAAAAC AACCTAAATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00186 Mean Expected Number 0.000 +strand -55 : -45 CTACGTGGaCA AC RSP00189 Mean Expected Number 0.002 -strand -47 : -56 TCCACGTAGa AC RSP00280 Mean Expected Number 0.006 -strand -47 : -56 TCCACGTAGA AC RSP00447 Mean Expected Number 0.004 +strand -151 : -142 AtCAAAGCAA AC RSP00447 Mean Expected Number 0.004 +strand -146 : -137 AGCAAAGaAA AC RSP00792 Mean Expected Number 0.006 -strand -20 : -29 CaAAGCAACA AC RSP00864 Mean Expected Number 0.002 -strand -54 : -62 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -56 : -64 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -58 : -66 AGAGAGAGA AC RSP01093 Mean Expected Number 0.002 +strand -150 : -140 TCaAAGCAAAG AC RSP01259 Mean Expected Number 0.002 +strand -55 : -48 CTACGTGG AC RSP01734 Mean Expected Number 0.007 -strand -47 : -53 TCCACGT Totally 12 motifs of 9 different REs have been found Description of REs found 180. Group RE: G-box motif /AC: RSP00186//OS: Oryza sativa /GENE: Amy3D/RE: G-box motif /TF: unknown 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxidoreductase |LOCUS: AT3G28480 |PROD: the same as GENE |complement(10677275..10679525) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.25 C - 0.19 1 tacgacctac aaaagtaaac taagtcaacg gtaattaaaa gccaaagtca 51 gagaaaaata cagtgggcgt cataaatact ccaaaagggg acgaaacagt 101 aaaatctcaa aactatggga aacaaATTGA taagaagaaa cattcttggg 151 tcaattctga gtagagcatt aatacaattc atcgtcttgg tcttcttcgc 201 ACCAACAACA AGTCTTTCTC ACGAAAATGG ATTCTCGGAT TTTTCTCGCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.009 -strand -116 : -123 TTTGGAGT AC RSP00467 Mean Expected Number 0.002 +strand -53 : -44 GGGTCAATTC AC RSP00468 Mean Expected Number 0.001 +strand -54 : -44 TGGGTCAATTC AC RSP00858 Mean Expected Number 0.007 +strand -171 : -164 GGTAATTA AC RSP01482 Mean Expected Number 0.001 -strand -44 : -54 GAATTGACCcA Totally 5 motifs of 5 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S acidic ribosomal protein P2 (RPP2C) |LOCUS: AT3G28500 |PROD: the same as GENE |10683334..10683968 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.28 C - 0.22 1 aagtcccaac tccaggattt atttcataaa atgactgcaa aaatgtatat 51 atagattcaa attagaaaat gggtttaaaa tctctcttta catataaggc 101 ccattaaaga cccataactt aaaaggccca ttaaaatttc cggctctgtg 151 tcgtgtaccg tacgtacgga acaaaaccct aaaatctcct ctcacattat 201 GGGACAGAGA CAACATTTGA CCCTTAAAAT TCACAAACTA TAGATCTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.010 -strand -46 : -51 CACGAC AC RSP00279 Mean Expected Number 0.005 -strand -19 : -27 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -27 : -19 AAACCCTAA AC RSP01237 Mean Expected Number 0.010 -strand -145 : -154 aTCTATATAT AC RSP01303 Mean Expected Number 0.010 +strand -28 : -19 aAAACCCTAA AC RSP01641 Mean Expected Number 0.006 -strand +15 : +6 TgTTGTCTCT Totally 6 motifs of 6 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: avirulence-responsive protein |LOCUS: AT3G28940 |PROD: the same as GENE |complement(10969337..10970585) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.12 T - 0.25 C - 0.16 1 ccttcaaaac aaaagttttt ttctcactat gagtcatttg ataattaatt 51 gaagaaaaag aaagaatcaa taatgcatgt tgacagaaag acatattaaa 101 taaataaata aaaaagctaa tgattcttct taaaagtcca aagtaagaaa 151 cagtcaacaa acgttggcta tacaacaaga aataaataca tcacattttt 201 CAGACAAAAC TCCAATTTCA CAGTGAACTC AAAAACAATG ACAAGCTCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.008 +strand -171 : -165 TGAGTCA AC RSP00664 Mean Expected Number 0.001 +strand -172 : -164 ATGAGTCAT AC RSP00850 Mean Expected Number 0.004 -strand -33 : -38 GCCAAC AC RSP01278 Mean Expected Number 0.002 +strand -172 : -164 ATGAGTCAT AC RSP01278 Mean Expected Number 0.002 -strand -164 : -172 ATGACTCAT AC RSP01470 Mean Expected Number 0.003 +strand -130 : -121 TaATGCATGT Totally 6 motifs of 5 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pectinesterase family protein |LOCUS: AT3G29090 |PROD: the same as GENE |11074948..11076683 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.26 C - 0.22 1 cgtctcaaca aaaaattctt taacaattcc tgcggctgga cttggactgg 51 ttagaattgc tccttcacga aatttggggt gaatttacaa ataaacataa 101 ataaagggag gtttcacgaa tttttaaaaa taagtatcct gatcactaaa 151 tattacaaaa ctaaagaacg tcacacagat ggtgatcgaa caataccgac 201 ACCTAAACCT CTGTACCACA ATTCGACGCA ATTCATCGTT ACCCAAAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.001 -strand -66 : -78 AcTTATTTTTAAA AC RSP00259 Mean Expected Number 0.006 +strand -153 : -147 TGGTTAG AC RSP01104 Mean Expected Number 0.001 -strand -87 : -94 AAACCTCC AC RSP01692 Mean Expected Number 0.004 -strand -11 : -18 TTCGATCA Totally 4 motifs of 4 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G29170 |PROD: the same as GENE |complement(11137243..11139086) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +307 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.31 C - 0.14 1 tgtagcagtt tctatataaa ttatgcatga caaaaaaaaa aaaaaaaagg 51 cattggtcct tccagttttc tctactctaa gaaaactttt ttttcttttt 101 tgaaagaatg gggttttaaa attcataaat taatacaggg ctcaaatata 151 aatttagtaa acgtatagga tttaatcagt aaattatcaa acccaaaacg 201 CGTCGTTACG GATGAAGAAG AAGTGAAGAA CCATTTTCGT CAAAGTAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.008 -strand -100 : -109 AAAAAAGAaA AC RSP00734 Mean Expected Number 0.002 +strand -7 : +1 CAAAACGC Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G29240 |PROD: the same as GENE |11192728..11194223 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +289 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.31 C - 0.13 1 cgttataatg gtcattcact tgttcttaag acccttttat gaatgatcca 51 aattttactg attcacgtaa gaaaaaaaag agagatagag gattagagat 101 tatggggatg aagtttatct agttggtgga tgtagtaatt atacgtgctt 151 tttttccaca ggagtgggta agtaactgca gaggcaaacc ttgagtggcc 201 ACTAGGGTTA CACATCATCA AAAAAAAGGT GATAAAAGAT TTGTCTCTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand -127 : -118 AAAAAAGAGA AC RSP00817 Mean Expected Number 0.002 +strand -61 : -52 TAtACGTGCT AC RSP00915 Mean Expected Number 0.001 -strand +19 : +10 GATGATGTGT AC RSP00997 Mean Expected Number 0.001 -strand +19 : +10 GATGATGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AHP2 |LOCUS: AT3G29350 |PROD: two-component phosphorelay mediator 1 (HP1) |complement(11265385..11266767) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.40 C - 0.13 1 ttgagtgtta tttatgttca caaaactttt gaatggtatt tttatcaaaa 51 aaaactttaa aattatgtta attatgaaaa ttctctattt aatttttttc 101 acccaaataa ataaatacat aaaaatgtcc aaatatttgt gtgtttctct 151 tttaattatt gtttcccatt taaagtaaaa aaatctggta gcagcgttac 201 AATTCGCGAG AAAGACAAAA CACAAGTTTC TTCTTCTTGG GATTGGCTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.008 +strand -101 : -96 CACCCA AC RSP00377 Mean Expected Number 0.001 -strand +48 : +39 AgCCAATCCC AC RSP00508 Mean Expected Number 0.002 +strand -165 : -154 GtATTTTTATCA AC RSP01054 Mean Expected Number 0.003 +strand -8 : +3 AgCGTTACAAT Totally 4 motifs of 4 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT3G29390 |PROD: the same as GENE |11290853..11295965 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.35 C - 0.20 1 aataaaactc caaaattatt tttatttata aataaatccc aactctttcc 51 tatctatcaa attaacccaa ttttagttta gagagcccaa aatttctaat 101 gagacccaaa gtttcTCAAT tttcgtaagg gcaaaaaaga aaagttttta 151 gaccgtccga ttttgaatcc tttaatctct tccaagaatt ctgaattctt 201 CTCTTCGTAG TCTTTGAATC CTAAAGTAAC AATCTTTCGT TTCAGAGCAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.008 +strand -186 : -175 AtTATTTTTATT AC RSP00140 Mean Expected Number 0.003 +strand -187 : -175 AATTATTTTTATT AC RSP00405 Mean Expected Number 0.009 -strand -187 : -194 TTTGGAGT AC RSP00445 Mean Expected Number 0.009 +strand -68 : -59 AAAAAAGAaA AC RSP01030 Mean Expected Number 0.009 -strand -85 : -92 AGAAACTT AC RSP01056 Mean Expected Number 0.004 -strand +33 : +23 AtTGTTACTTT Totally 6 motifs of 6 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATARP6 |LOCUS: AT3G33520 |PROD: actin-related protein 6 (ARP6) |complement(14104642..14106535) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.28 C - 0.27 1 accgaataac ccgatccgac caacccgatt tagtcgaact cccgggccta 51 ctaacttttg tagcgtttaa cggaacaacc ggaccggttt tagtaatttc 101 cctaattcaa attcactctt ccctcagttt gaaatctcta aactggtaat 151 tccaatacag tcttttctta aaatcgcact agcttaaacc agtagatcct 201 AAACCGATTC ATTTAAACAA CAAAAAACCA CTTACAGAGT TCGTTCGCCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.006 -strand -66 : -73 ATTTCAAA Totally 1 motifs of 1 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G42150 |PROD: the same as GENE |14320300..14322620 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +1253 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.32 C - 0.20 1 cataatataa tatttttata tgttatttat gcaaatttcc caaatgtaaa 51 tcacttgggc acgtgtcaag agaaagcgcg taatcatcac gtaatcaagc 101 gaaagggttt tgcttacaaa atcctgagcc gtctttcaaa gcCCAATaac 151 tggcccaaac attctcagta atatttcgac ctaaatcctt atttagacgc 201 ATCTTTATTC GATAAAAGAT AATAACAAAA CTTATCTCTT TGCCTTGTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 +strand -143 : -134 gGCACGTGTC AC RSP00125 Mean Expected Number 0.004 +strand -192 : -181 AATATTTTTATa AC RSP00135 Mean Expected Number 0.003 +strand -192 : -181 AATATTTTTATa AC RSP00204 Mean Expected Number 0.001 -strand -134 : -143 GACACGTGcC AC RSP00524 Mean Expected Number 0.007 -strand -135 : -141 ACACGTG AC RSP01035 Mean Expected Number 0.007 +strand -140 : -134 ACGTGTC AC RSP01152 Mean Expected Number 0.001 -strand -134 : -143 gACACGTGCC AC RSP01559 Mean Expected Number 0.009 -strand -120 : -125 ACGCGC AC RSP01600 Mean Expected Number 0.009 +strand -67 : -60 TTTCAAAG Totally 9 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATA1 |LOCUS: AT3G42960 |PROD: alcohol dehydrogenase (ATA1) |complement(15029683..15030673) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.48 G - 0.15 T - 0.25 C - 0.12 1 agcaataaaa aacaagaaaa atttattcta taattaaaat tctacttctt 51 tctattttcg taaaaaaaaa actaaccata aaataaactt gtattaacgt 101 gaagatgatg aatgaactaa caagtgaaag aaattaaagt agttgatgga 151 aaggtaaaga gcatgtctaa caagaagaca cattaaaggt tttataacaa 201 CAAGATCGTC AAGAGACAGT AAACCTAAAA TGGCGAACTC AGACAAAAGA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: auxin-responsive protein-related |LOCUS: AT3G43120 |PROD: the same as GENE |15105071..15106498 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +561 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.33 C - 0.14 1 ttaagagtaa caggatcatt tgattatttt ctataatcta gaattagaaa 51 cagttacatg cgacagtgac gggaaggcca agaaaagttt ctgttatcca 101 aagaaaatca acgaaattac gaatccaaaa taagaaaatt attttaaaat 151 tagaacttta attttgattt tgttttgcta gttcttgtta cttgaatttt 201 CTCTCGTCAT CATCAAAACC AAAAATCCTT TTGAAAAAAA AAAAAATCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand +33 : +27 CAAAAGG AC RSP00355 Mean Expected Number 0.007 -strand -105 : -112 TAACAGAA AC RSP00716 Mean Expected Number 0.002 +strand +14 : +22 CAAAACCAA AC RSP00894 Mean Expected Number 0.009 -strand -3 : -10 AATTCAAG AC RSP00916 Mean Expected Number 0.001 -strand +11 : +2 GATGACGAGA AC RSP01030 Mean Expected Number 0.009 -strand -109 : -116 AGAAACTT AC RSP01032 Mean Expected Number 0.010 +strand -76 : -67 CCAAAATAAG AC RSP01209 Mean Expected Number 0.009 -strand -67 : -76 CTTATTTTGG AC RSP01209 Mean Expected Number 0.009 -strand -114 : -123 CTTTTCTTGG AC RSP01711 Mean Expected Number 0.009 +strand -163 : -154 CTAGAATTAG Totally 10 motifs of 9 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: zinc finger (FYVE type) family protein |LOCUS: AT3G43230 |PROD: the same as GENE |15218355..15220813 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +409 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.28 C - 0.19 1 agacagagaa cttgagccga tatcactatg gtctaacttc taactttcta 51 ataagtatat aaacatgtag tgattaccaa gtaaattaat ttatcaaata 101 ttcacttttt gaatcgtttc aagcaatagc caaaaaaatA TTGAaaggct 151 caaggcccat tgggccctca catatatacg aagtctataa tgacttgctt 201 ACCGGAAAAC CGAAATAAAT GGAATAAAAT ATTCCCCGAG GCGCCGTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01678 Mean Expected Number 0.007 +strand -70 : -59 CAAaAAAATATT AC RSP01678 Mean Expected Number 0.007 +strand +22 : +33 gAATAAAATATT Totally 2 motifs of 1 different REs have been found Description of REs found 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATGSTU27 |LOCUS: AT3G43800 |PROD: glutathione S-transferase, putative |15671846..15672912 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.30 C - 0.18 1 aaaaagaacc acttgcgact catgacgtat caaacgaagt tatctataat 51 ctattggatt aaacaacatt acctcacatg catcacaaaa aaaatattaa 101 atcataatca ttATTGAtcc acctttatat gattattatt ttttatattt 151 tttgtcaact gcccttataa gttaagagcc ataaaagggc tttgatctcc 201 ACCAAGTTCA TTTCACCAAA AGAAAAGTCA TTGAAAACCA AAAAAAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00206 Mean Expected Number 0.002 -strand -124 : -135 GTGAGGTAATgT AC RSP00522 Mean Expected Number 0.006 +strand -192 : -186 CCACTTG AC RSP01033 Mean Expected Number 0.006 -strand -13 : -22 CCTTTTATGG AC RSP01195 Mean Expected Number 0.003 -strand -103 : -115 AATATTTTTTtTG AC RSP01470 Mean Expected Number 0.009 -strand -116 : -125 TgATGCATGT AC RSP01659 Mean Expected Number 0.000 +strand -180 : -169 CATGACGTATcA Totally 6 motifs of 6 different REs have been found Description of REs found 199. Group TF: GT-1 /AC: RSP00206//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II* /TF: GT-1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1477. Group TF: HY5 /AC: RSP01659//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/A-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G44190 |PROD: the same as GENE |complement(15912784..15914595) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.29 C - 0.24 1 caatcacatt tcttactttc tcgtttcgat ttggtttatt cggtacggat 51 acagttaaac cgggtacctt aacccaataa tgggtagcaa acaatggccc 101 gcttaaattt ataccactaa tgggcctctt tcccaacttt aaaggcccat 151 aatattttga aaaagaataa taatgagttg gcttacctga gtaatgacgt 201 AAGATCACGG AACCACGCCA GGATCCTTCC GCCGTCGGCG ACGTCGCTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.004 +strand -6 : +2 TGACGTAA AC RSP01476 Mean Expected Number 0.009 -strand -58 : -65 TTTAAAGT Totally 2 motifs of 2 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: IVD |LOCUS: AT3G45300 |PROD: isovaleryl-CoA-dehydrogenase (IVD) |complement(16632060..16636033) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.36 C - 0.16 1 gtgttcttct ctcatcaaca ctcacaacca attgttttga cttgtagtat 51 atacatatct tctaatatca aaaactttac tataaatgaa aaaataattt 101 ttttttgtcg atttgaaaat ggtataatag agcagtgtca gtggtatgga 151 ggagtagcaa atagcaaagt ggtatacgga actagattag atggaccaat 201 GACTCATTGC TCATATCTTC TTCTCAATTC CAATTTTGTA ATCCTTATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.007 +strand -124 : -109 TTACTATAAATGaAAA AC RSP00085 Mean Expected Number 0.007 -strand -109 : -124 TTTtCATTTATAGTAA AC RSP00195 Mean Expected Number 0.001 -strand -21 : -31 TCCGTaTACCA AC RSP00664 Mean Expected Number 0.002 -strand +7 : -2 ATGAGTCAT AC RSP00979 Mean Expected Number 0.008 -strand -52 : -61 CCATACcACT AC RSP01278 Mean Expected Number 0.003 +strand -2 : +7 ATGACTCAT AC RSP01278 Mean Expected Number 0.003 -strand +7 : -2 ATGAGTCAT Totally 7 motifs of 5 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: senescence-associated family protein |LOCUS: AT3G45600 |PROD: the same as GENE |complement(16744740..16746936) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.31 C - 0.21 1 agatctttta ttttagtcaa aacagcctta aaaataataa aatcaaatat 51 ttgcgtcacg acaaaaaaat aaacaaaatt ttcttgtttt tcttggtaaa 101 catcaataaa ctaatcaaat gacaataaca cactacCCAA Tagcaaaatc 151 agactgtact gacacgtgtc aaagcatgtg cagagatatg taaacccatt 201 ATGTCTTCAT CACCTCTTCT TTAACGCCTC TGGCTCTGCA TTTCTCAGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 +strand -40 : -31 GACaCGTGTC AC RSP00143 Mean Expected Number 0.001 -strand -31 : -40 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -40 : -31 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -31 : -40 GACACGTGtC AC RSP00219 Mean Expected Number 0.000 +strand -41 : -30 TGACACGTGtCA AC RSP00219 Mean Expected Number 0.000 -strand -30 : -41 TGACACGTGtCA AC RSP00404 Mean Expected Number 0.006 +strand -151 : -145 TTTGCGT AC RSP00524 Mean Expected Number 0.006 +strand -39 : -33 ACACGTG AC RSP00524 Mean Expected Number 0.005 -strand -32 : -38 ACACGTG AC RSP00936 Mean Expected Number 0.000 +strand -41 : -30 TGaCACGTGTCA AC RSP00936 Mean Expected Number 0.000 -strand -30 : -41 TGaCACGTGTCA AC RSP00970 Mean Expected Number 0.000 -strand -142 : -150 GTGACGCAA AC RSP01035 Mean Expected Number 0.005 +strand -37 : -31 ACGTGTC AC RSP01035 Mean Expected Number 0.006 -strand -34 : -40 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -39 : -32 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -32 : -39 ACACGTGT AC RSP01748 Mean Expected Number 0.000 -strand -178 : -190 GtTTTGACTAAAA Totally 17 motifs of 10 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 893. Group TF: STF1; STF2; STGA1 /AC: RSP00970//OS: Glycine max /GENE: Auxin-regulated genes/RE: CRE (G/A) /TF: STF1; STF2; STGA1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1555. Group TF: WRKY11 /AC: RSP01748//OS: Arabidopsis thaliana /GENE: AtWRKY11 (At4g31550)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G45620 |PROD: the same as GENE |16756881..16759110 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +22 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.24 C - 0.21 1 gggcttgtac ggcccaaatt attattttac tcatatcgtt ttaacgtcat 51 taatgatttt ctgaagaaac gtaaacattt gcactgtatg acgttttaga 101 gtgacaaaaa caacagatca acaaatttcg attaccgtag acgacacgat 151 gtttcacacc cgactacgaa tcacgacgac ttatacaaaa cagcaaaagc 201 GTAAAGACTT GAACTTAAAA CCATGGCGAG ACCGAGACGA AGAAACACAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00024 Mean Expected Number 0.007 +strand -181 : -174 TATTATTT AC RSP00232 Mean Expected Number 0.005 -strand -107 : -116 ACGTCATAcA AC RSP00996 Mean Expected Number 0.007 -strand -79 : -88 GTTGATCTGT AC RSP01086 Mean Expected Number 0.001 -strand -126 : -135 TTTACGTTTC AC RSP01654 Mean Expected Number 0.008 -strand -150 : -159 AATGACGTTA Totally 5 motifs of 5 different REs have been found Description of REs found 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: oxidoreductase |LOCUS: AT3G45770 |PROD: the same as GENE |complement(16816547..16818808) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.24 T - 0.31 C - 0.15 1 ggagaatgtg agtggaaaaa aaaaaataga ctttagattt ggttttggtt 51 ttggtttaga ttcggtttgt tttctcggtt acaatttttc cccccgtccc 101 taatttgatt tgtgcgaaga aaaccaaacg tgctgaaacg ttgtcgttcg 151 gatactatca gcgattgcta aaattgttaa gaacgagaaa aaaccaaaac 201 GACGTCGTTT CTTATATCGT TGCCAGAGAG AGTTTGACGG CGGAGAGATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.010 +strand -107 : -102 CCGTCC AC RSP00421 Mean Expected Number 0.010 -strand -122 : -128 ACCGAGA AC RSP00716 Mean Expected Number 0.003 -strand -148 : -156 CAAAACCAA AC RSP00716 Mean Expected Number 0.003 -strand -154 : -162 CAAAACCAA Totally 4 motifs of 3 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ADF1 |LOCUS: AT3G46010 |PROD: actin-depolymerizing factor 1 (ADF1) |complement(16920391..16921805) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.12 T - 0.29 C - 0.10 1 attaaaaatt cagtttattt atataacaag aaaaatcagt gttattattg 51 aaacacctac caaaataatg aatcaaaaac ataaaattaa ttatagtatt 101 gaattcataa ttcaacaata ttATTGAaaa tttgaaatac ataccaaata 151 ataatagttt tttttcgtct ctataatatg gtggactccc gaataaagtt 201 GAAGAAAGAA AGAGAAAAGA AATTGAGAAG AAAAAAGAAA AAAAGGTGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.002 +strand +2 : +15 AAGAAAGAAAGAgA AC RSP00489 Mean Expected Number 0.005 +strand -147 : -138 cACCTACCAA AC RSP00489 Mean Expected Number 0.005 +strand -63 : -54 TACaTACCAA AC RSP00861 Mean Expected Number 0.006 +strand +7 : +15 AGAAAGAGA AC RSP01453 Mean Expected Number 0.002 +strand -146 : -140 ACCTACC Totally 5 motifs of 4 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G46540 |PROD: the same as GENE |complement(17145076..17146572) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +176 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.42 C - 0.12 1 aattcgtttt caagctatta attttgtaac ttctatgtct ttttatgaat 51 ttatgagtta taaaaatgat tcaaaatcag atcagttgag gcaattgatg 101 tggaattaat ggtaattggt ggtactatag tgcttgactt ttCCAATgta 151 aaacgatcaa cgatcattca aaattttcaa tcttgtggac ctttttgggg 201 ATCACAGATT TGGACTTTTC TTGGTTATAT TAAAGTTTTT TTTGTCCATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.001 +strand -46 : -36 GATCAaCGATC AC RSP00440 Mean Expected Number 0.001 +strand +12 : +20 GGACTTTTC AC RSP00610 Mean Expected Number 0.000 -strand -11 : -24 GtCCACAAGATTGA AC RSP00727 Mean Expected Number 0.005 +strand -69 : -63 GCTTGAC AC RSP00790 Mean Expected Number 0.002 +strand -156 : -146 aTGAATTTATG AC RSP00941 Mean Expected Number 0.009 +strand -26 : -19 TTTCAATC AC RSP01033 Mean Expected Number 0.008 +strand -11 : -2 CCTTTTTGGG AC RSP01214 Mean Expected Number 0.003 +strand -11 : -2 CCTTTTTGGG AC RSP01594 Mean Expected Number 0.009 -strand -19 : -26 GATTGAAA AC RSP01640 Mean Expected Number 0.006 +strand -168 : -159 CTATGTCTtT Totally 10 motifs of 10 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 586. Group RE: UN I2 /AC: RSP00610//OS: Lycopersicon esculentum /GENE: rbcS1/RE: UN I2 /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MBD5 |LOCUS: AT3G46580 |PROD: methyl-CpG-binding domain-containing protein |17159327..17160574 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.30 C - 0.24 1 cactctaatt cacaacaaga aattaattta ccttaatggg cccaaaagcc 51 caaaaactgc aacgtggcta attaagccat tcctcgagct caaactttaa 101 aacagaaaca aaacttctaa cttacaaATT GTacttctgt cttttactct 151 gtctgattca gtcaaaaaga aaggaatatt aaaatctctc aattttatat 201 ACACTCACTC AATCATACCT TTCTCTGGAG ACCTCCACAG GGTTTGTTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.007 -strand +48 : +42 AACAAAC AC RSP00073 Mean Expected Number 0.001 +strand -142 : -133 GCaACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -133 : -142 GCCACGTtGC AC RSP00595 Mean Expected Number 0.003 -strand -124 : -132 GCTTAATTA AC RSP00862 Mean Expected Number 0.001 +strand -33 : -25 AGAAAGGAA AC RSP01034 Mean Expected Number 0.002 +strand -139 : -133 ACGTGGC AC RSP01772 Mean Expected Number 0.010 +strand -168 : -162 TTAATGG Totally 7 motifs of 6 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: scarecrow transcription factor family protein |LOCUS: AT3G46600 |PROD: the same as GENE |17168909..17170950 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.33 C - 0.24 1 aacaacaaga aaacaaatag ctttttagcc atttggaccc acgacagtag 51 ataaagtctt ggacatatta ttactaacct tttgtggcgg cttagtgttt 101 atcttcaacc ccacacattc tctgtttcct cgaaacttca tttttcttct 151 ttgccaagac aaagattaaa taagacaaat atcaacccta tcctttgttt 201 ATATCAACAA CATCTCGCAA CTTGTGTTCA CATGAAACTT CTCACTACTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.001 -strand -109 : -115 AGCCGCC AC RSP00438 Mean Expected Number 0.003 +strand -115 : -110 GGCGGC AC RSP00596 Mean Expected Number 0.010 -strand -113 : -118 GCCACA AC RSP00807 Mean Expected Number 0.003 -strand -110 : -115 GCCGCC AC RSP01033 Mean Expected Number 0.005 +strand -123 : -114 CCTTTTGTGG Totally 5 motifs of 5 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G46630 |PROD: the same as GENE |complement(17191919..17193414) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.34 C - 0.20 1 aagcatataa agatcaatct aacggcacag attggctggc acctaacttt 51 taagaaaatg aaaataatta ttgtggaaag gctcagagag gtttagttac 101 tctgtttagc ttcttcaacg tcacgggttc gatgccccaa cttcacaaac 151 tgacgaaacg ttatcttctt ctcaaatttc tgattctctg agatttcccc 201 AATTTTTCAT CTTCTTCGAG TGATTAGTAC AGATTAGGGT TTTATTCGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.007 +strand -86 : -77 TCaACGTCAC AC RSP00279 Mean Expected Number 0.002 +strand +34 : +42 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +42 : +34 AAACCCTAA AC RSP00709 Mean Expected Number 0.006 -strand -131 : -139 TAATTATTT AC RSP00985 Mean Expected Number 0.008 -strand -153 : -162 AGTTAGGTgC AC RSP01303 Mean Expected Number 0.004 -strand +43 : +34 aAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G46670 |PROD: the same as GENE |complement(17203574..17205382) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +170 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.28 C - 0.15 1 aatcaaatac gattatctct tttggcattt tactcaggat agaattgatg 51 cagcagaaaa agacaatttt tttggtatgg accatctttt gatatgaagc 101 caaagtcggc aaaagaacca agaagacaaa accatctttg cttttttttt 151 tttggttatc aagatagaga gatataccaa tgtcaataag taaagagagc 201 CAAGAAAAAC GAAATACAGA TGAAACAATG TCCACAAGTC TGAGAATCTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.009 -strand -91 : -96 GCCGAC AC RSP01735 Mean Expected Number 0.002 -strand +49 : +41 AGATTCTCA Totally 2 motifs of 2 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G46830 |PROD: the same as GENE |complement(17257329..17259682) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +335 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.31 C - 0.26 1 tctttaacgc aattataaag ctcaaaacta catttccaat aatacccctt 51 ggaacatgct cttacttttt gccagcctgc taacgaatca ttagttgcca 101 catcagcacg ataactgaag tctttgtctt tttctcaaac gcgacgtcgt 151 ttctattccc tgacacagag atacgtatag atacaccgta tattcacttt 201 ATTGCTCCTC TCCTCTTTCT CACGAAGAAG AAGACGAAGC CCATCAAATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00248 Mean Expected Number 0.003 +strand -104 : -95 GCCACaTCAG AC RSP01633 Mean Expected Number 0.002 +strand -199 : -189 CTTTAACGCAA Totally 2 motifs of 2 different REs have been found Description of REs found 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G47070 |PROD: the same as GENE |complement(17348050..17348718) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +226 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.27 C - 0.18 1 tcaagttgca gcagctaaca accaacatgg tcagggacaa gatcacacac 51 ttaaaaaaaa tcaagtcgtg tctcttccgc attcatacat ttcatttgac 101 aaataaatta taaatctgaa ATTGAagact ttgactctct gtgcaaattt 151 ccgtttaaga acttgagaag aatatacata aattgtgcca agatatatct 201 AAAAACAATT AAACCAAAAA AAATGTATCC AAGTGATTCA AAGAAAAATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00129 Mean Expected Number 0.008 -strand -131 : -136 CACGAC AC RSP00943 Mean Expected Number 0.007 +strand -109 : -99 TCATTTgACAA AC RSP01015 Mean Expected Number 0.004 -strand -103 : -112 CAAATGAAAt AC RSP01596 Mean Expected Number 0.007 -strand -99 : -109 TTGTcAAATGA AC RSP01641 Mean Expected Number 0.001 +strand -135 : -126 TCgTGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G47160 |PROD: the same as GENE |complement(17370976..17372990) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.34 C - 0.22 1 ccgaacaaag ggcaaaatgg tcaatcttgt aacccacttc cgcgtctttt 51 ctcgataaag cttcttcgag aatcgtaact gaagtttatc tccatatgca 101 aagttactaa aataccATTG Tctcataccc gaatttacga aaataccatt 151 cttctctctc atctctgatc atcgaatttg ggtgaagaaa tatcttttct 201 ATCTAATTGC TAAAAGGAAA AGCATCAAAC TTTGTTTTCT TTGCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.010 -strand -17 : -22 CACCCA AC RSP00301 Mean Expected Number 0.009 +strand -104 : -98 TGCAAAG AC RSP00442 Mean Expected Number 0.006 -strand -95 : -104 TAACTTTGCA AC RSP00447 Mean Expected Number 0.008 -strand +45 : +36 AGCAAAGaAA AC RSP00653 Mean Expected Number 0.006 +strand -49 : -39 TTCTCTCTCaT AC RSP00654 Mean Expected Number 0.010 +strand -170 : -161 aACCCACTTC AC RSP01499 Mean Expected Number 0.008 +strand -163 : -154 TTCCgCGTCT Totally 7 motifs of 7 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G47295 |PROD: the same as GENE |17438935..17439496 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.26 C - 0.27 1 tgtgcacccc ttgatgtgaa caaatgtggg gacaattcta agccacatgt 51 cactatttcc ttggttgtct tccgaccatt aataccccat ctcccaaact 101 aacactcttc tttaacacac acacacacac acacacaaca acaacaacaa 151 caacaacaaa gaggctttaa tgttttagtc tcttgttcac gtgaaaaaac 201 AAACTGCAAT TGGATAACCA CAACCAGAAT CGATTTTGAA TCATCATTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -159 : -150 GCCACaTGTC AC RSP00313 Mean Expected Number 0.002 +strand -157 : -147 CACATGtCACT AC RSP01473 Mean Expected Number 0.000 +strand -3 : +10 AACAAACTGCAAT Totally 3 motifs of 3 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1) 1342. Group RE: AACA motif /AC: RSP01473//OS: Oryza sativa /GENE: GluA-3/RE: AACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G47430 |PROD: the same as GENE |17491682..17492777 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.34 C - 0.20 1 tctttttatg tatttttctt ttttatcaaa tttcttttta tgtatataaa 51 atatttgtga aagtttcttc cacacatata aaagattaaa tttctttttt 101 tatcccaagc ttgaatatca aaacatgaga caacaagagc aagtattagc 151 caccacaaag caatcatctt aaaactcaaa ccccaaaaca aacaaaagac 201 AAAACCCGAT TGTTTCGAGC ACAAACGTCA CTTGTGGTTT ACATCGTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.004 +strand +19 : +28 GCACAaACGT AC RSP01030 Mean Expected Number 0.009 -strand -133 : -140 AGAAACTT AC RSP01654 Mean Expected Number 0.006 -strand +32 : +23 AGTGACGTTT Totally 3 motifs of 3 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CAB4 |LOCUS: AT3G47470 |PROD: chlorophyll A-B binding protein 4 |complement(17504357..17506018) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +260 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.31 C - 0.25 1 ttaggaaaat cagactttag atttttggtt tcccatatgc caattcagtt 51 ccatttgatt ggttgacgag aatcctcact ccactctaat atttttaaat 101 ccatttaATT GAcacgtgta acaacaatgg acccgacact atcttattcc 151 gaccaatctc aaacaacatt aaaatcctct taagatacgc ttcgaagata 201 AACCGATAAG CCTGTATCTC CTCTCAAACC AATCTCCTCC GTCAAATCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 -strand +11 : +5 GCTTATC AC RSP00231 Mean Expected Number 0.004 -strand -139 : -145 CCAATCA AC RSP00340 Mean Expected Number 0.001 -strand -81 : -90 TaCACGTGTC AC RSP00524 Mean Expected Number 0.007 +strand -89 : -83 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -82 : -88 ACACGTG AC RSP00629 Mean Expected Number 0.008 -strand -175 : -182 AAAAATCT AC RSP00888 Mean Expected Number 0.002 -strand -175 : -183 AAAAATCTA AC RSP00917 Mean Expected Number 0.001 +strand -139 : -130 GTTGACGAGA AC RSP00996 Mean Expected Number 0.009 -strand +51 : +42 GTTGATTTGA AC RSP01035 Mean Expected Number 0.007 -strand -84 : -90 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -89 : -82 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -82 : -89 ACACGTGT Totally 12 motifs of 10 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT3G47560 |PROD: the same as GENE |complement(17536162..17538008) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.28 C - 0.14 1 tcatttacat ttactagatg gtaggtttga ttggtaaaaa ctaagttttt 51 ttaaacacta gaaaaaagag agaaaaaata atgagtgaca aagaaaatta 101 aatagaaatc atatatatat atatataaat tccaaaatat gaTCAATgag 151 agatcatgtg gttgtcccac attatctttc tcaacgcacg ccttaccatt 201 AAGGAGACCC AAATTTCCTG CAACAAACAA AGTAAAAAAG TTGAGAATGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00014 Mean Expected Number 0.001 -strand -171 : -181 TCaAACCTACC AC RSP00231 Mean Expected Number 0.008 -strand -167 : -173 CCAATCA AC RSP00445 Mean Expected Number 0.007 +strand -139 : -130 AAAAAAGAGA AC RSP01453 Mean Expected Number 0.004 -strand -175 : -181 ACCTACC Totally 4 motifs of 4 different REs have been found Description of REs found 13. Group RE: MRE-core /AC: RSP00014//OS: Arabidopsis thaliana /GENE: CHS/RE: MRE-core /TF: unknown 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G47833 |PROD: the same as GENE |17659618..17661125 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.32 C - 0.16 1 ctgttctata cgacatactc gagctcatta gttttgcatc caataccaga 51 ttcataacat cacaacagaa gaggtctaca aatgtatact atataacttc 101 ggggtcaaaa tgaaattatt cttaaggtat gggtcaaaaa cagaaaacga 151 aaattacaat ttaataagtt cattattgag aaatttgcag aaaaagacct 201 TTTCGATTTC GTCTCCATTG ATGATATTCG ATAGTTAGTG GCTAATTTGC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G47850 |PROD: the same as GENE |complement(17665064..17666984) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.23 C - 0.22 1 agaatatcaa cgttgagaac taccccgtga agcactgata cctagcacta 51 ccaaacccaa aaggtgtatc aaaattcttg aatattaaat gggcttttta 101 aacatatatt ATTGGgtttg caagggtgaa aggcccaaat tcgtcggtag 151 atacttaaaa caaacgacac acgtttctaa cctctcagag caaaacgtca 201 TGCAAGTCGA AATCCCATCG CCGTATGATC ACGGAAGCAG AAGGCAACGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01470 Mean Expected Number 0.005 +strand -3 : +7 TCATGCAaGT Totally 1 motifs of 1 different REs have been found Description of REs found 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G48070 |PROD: the same as GENE |17761697..17763746 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +166 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.27 C - 0.25 1 gtccaccgta cgccaccgtt tttaaatgaa cagaagtttc tcacacgtgt 51 agatccatca caattacaaa accaccccta cattcgagcg tgtgcaaaag 101 tcaaaagaaa gggtacttta gtcagaagga aagttctgtg cggagacgag 151 gagtttccgt tatcccctta ttttatctct ctctctctcg ttttctctca 201 CAGACACAAC AAACAAAGCA AAAAAAAATA AAAAATCGCA CGTTTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.003 +strand +37 : +46 CGCACGTtTC AC RSP00057 Mean Expected Number 0.002 -strand -49 : -58 TCCtCGTCTC AC RSP00447 Mean Expected Number 0.008 +strand +12 : +21 AaCAAAGCAA AC RSP00524 Mean Expected Number 0.009 -strand -151 : -157 ACACGTG AC RSP00864 Mean Expected Number 0.001 -strand -13 : -21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -15 : -23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -17 : -25 AGAGAGAGA AC RSP00961 Mean Expected Number 0.005 +strand -108 : -101 TGCAAAAG AC RSP01030 Mean Expected Number 0.005 -strand -160 : -167 AGAAACTT AC RSP01256 Mean Expected Number 0.003 +strand -158 : -151 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -151 : -158 ACACGTGT AC RSP01283 Mean Expected Number 0.000 -strand -12 : -28 GAGAGAGAGAGAGAtAA AC RSP01469 Mean Expected Number 0.007 +strand -160 : -151 TCACAcGTGT AC RSP01480 Mean Expected Number 0.009 +strand -32 : -25 TATTTTAT Totally 14 motifs of 11 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G48185 |PROD: the same as GENE |complement(17803996..17804528) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +236 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.35 C - 0.25 1 aagggcataa gatagggcta ggatatttag aagcccacaa aaaaaaagag 51 gagctagaaa acattttgtt caaagtagta atgataattt tcctccccta 101 cctctgactt ctcttcatcc ctcatcatca ttacaacctc acttctctct 151 ctctctacct tcactttagt tcccaatatc atcatgatga tagttatgat 201 GATCATTCAT GTTCATCTTC GTCGTCTTCT TCTCCTTCTT CTTTCTCTGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand -159 : -150 AAAAAAGAGg AC RSP00864 Mean Expected Number 0.005 -strand -45 : -53 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -47 : -55 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -49 : -57 AGAGAGAGA AC RSP00915 Mean Expected Number 0.009 -strand -72 : -81 GATGATGAGG AC RSP01470 Mean Expected Number 0.009 +strand +3 : +12 TCATtCATGT Totally 6 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G48420 |PROD: the same as GENE |17940632..17942686 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.31 C - 0.14 1 gaaaaaagga gaagaaggaa gatttaaagc aaaaaaaaaa gtatttaagc 51 tgtcataaat agaatttttt taatcaaaag tgtctaaaag gttatttaaa 101 ctcggtttaa ggtgtgTCAA Taggtagaga aataccgaat tagctaaccc 151 gacccgtact cgggtggctc tttctttcaa ttctttctta ttttgtggtc 201 GTTAAACAAA GACCGGATAA GTTGAAGACA TTCGCGACCG TTATTTATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.004 -strand -146 : -153 TGACAGCT AC RSP00745 Mean Expected Number 0.002 +strand -115 : -104 aAAAGGTTATTT Totally 2 motifs of 2 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: nitrate-responsive NOI protein, putative |LOCUS: AT3G48450 |PROD: the same as GENE |complement(17955017..17955873) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.15 T - 0.41 C - 0.22 1 ggcatgatcc acgtttttag tctttttgct ctctatgact tttttcttca 51 ttttgaattt actaaaataa tattaggtat ttctgttggg aaagccgcgg 101 gaaggaagaa aggtgagaat atgaaaaaag gagttttgtg ttgttttcaa 151 cgacgacctc ttctcctctc tcctcctcct cttcttctat attacaattt 201 CACCTCTCTT TTTCCCAGAT CATCATCATC CTCTCTCTTT CTCTAGATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00024 Mean Expected Number 0.006 -strand -129 : -136 TATTATTT AC RSP00039 Mean Expected Number 0.009 -strand +2 : -9 TGAAATTGTaA AC RSP00914 Mean Expected Number 0.006 -strand +24 : +15 GATGATcTGG AC RSP00915 Mean Expected Number 0.004 -strand +24 : +15 GATGATcTGG AC RSP01020 Mean Expected Number 0.009 +strand -80 : -74 ATGAAAA AC RSP01039 Mean Expected Number 0.009 +strand -93 : -88 GAAAGG AC RSP01687 Mean Expected Number 0.003 -strand -104 : -110 CGGCTTT Totally 7 motifs of 7 different REs have been found Description of REs found 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF 963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT3G48460 |PROD: the same as GENE |17960430..17962180 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.36 C - 0.16 1 gacaatatat tctggtacta atattttgtg gtacgaaata aactatttaa 51 agcttaaatt attcttcacg acaataaata aaattttatc taaacttaaa 101 tctcatctgc caaaattcga ttatagttta tgtatatata taataatata 151 ataaaaaaaa gaatgtatat agtttattct caccactaca tgtatataac 201 ACAACCATTT TCATTAGAAG CTCAAATTTC AAATCTCACT TCCTTATCAC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: xyloglucan:xyloglucosyl transferase |LOCUS: AT3G48580 |PROD: the same as GENE |18018166..18019472 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.21 T - 0.26 C - 0.13 1 aaacgagttg gaaacagctt tcactacact aaaaacaaac ttaatctcaa 51 aatttagatg gattaaactc aaaacttttt aattaattga ataggatttt 101 aggatgatgc agtgaatata gactatttgg tgaaaaaata caacgtaacg 151 tacgtggctg ctctaagcct atataacata gcccaagaga gtcgtgttct 201 AATGTGATTA AGTAAAGTGA GGGAGAAGCA ACGAGAGATA GAGATAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -50 : -43 TACGTGGC AC RSP00051 Mean Expected Number 0.002 -strand -43 : -52 GCCACGTACg AC RSP00064 Mean Expected Number 0.003 +strand -52 : -43 cGTACGTGGC AC RSP00072 Mean Expected Number 0.008 +strand -51 : -45 GTACGTG AC RSP00075 Mean Expected Number 0.002 +strand -51 : -42 GTACGTGGCt AC RSP00247 Mean Expected Number 0.001 -strand -43 : -52 GCCACGTAcG AC RSP01034 Mean Expected Number 0.004 +strand -49 : -43 ACGTGGC AC RSP01276 Mean Expected Number 0.002 +strand -51 : -44 GTACGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: HAP5A |LOCUS: AT3G48590 |PROD: CCAAT-box binding transcription factor Hap5a |complement(18019643..18020967) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.29 C - 0.19 1 tctcttcact cttgatgttt tcttttggtt catttcggat gcatatgaac 51 tttggtacgt gtaaaaaaaa aacaaaattt aacttgaaat agaaaataga 101 aaaaaattaa tttaggaaat agaaaaaaaa gagagaaaat catcagctac 151 atcgctgtcc accttatcca cttgtacccc aatccctttg gcaaaaactt 201 GTCACGACCT TTTTGATCCA AAAATCAAAA TCCAAAACCG ACCAATGGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.003 +strand -146 : -140 GTACGTG AC RSP00445 Mean Expected Number 0.002 +strand -76 : -67 AAAAAAGAGA AC RSP00522 Mean Expected Number 0.007 +strand -33 : -27 CCACTTG AC RSP00847 Mean Expected Number 0.005 +strand -42 : -33 CCACCTtATC AC RSP01751 Mean Expected Number 0.001 +strand -34 : -26 TCCACTTGT Totally 5 motifs of 5 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G48710 |PROD: the same as GENE |18051962..18055173 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.16 T - 0.41 C - 0.22 1 catttttctc aaaaaattta cgggatagct gtgaaattgg ggagtgagcg 51 agagccccgc ctttgagttt cttcttttgg caccaaaatt tttgaaatcc 101 ccaaatttta ggttttcgaa tttctctcaa aagctctgaa atttagtttt 151 tttttttttt ggtttaccct ttgattcgat tctcctttat cactcccatc 201 AGCTTTCTCC TTTATTCACC ACTGTTTCAG TTAGTCGTCG TCTCCACATG 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RNA polymerase III subunit RPC82 family protein |LOCUS: AT3G49000 |PROD: the same as GENE |18173693..18176968 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +195 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.32 C - 0.18 1 ttttcttggg tcaaaccata cattcaattt attagggcct gataggccca 51 aacttctcta ggccaacaat taataaccta caattaggga tgttaaaatg 101 ggctaaatat ttaaggccgg cccgagtcct tataaaaaac aaaagcccta 151 gccctgggtt ggtgttttct tatacttata ttggtgggtt catgttagat 201 TATCGAAATT TTGGATTCGA ACGTGTGGAT CGCTGGAAAA ATTAAACTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00017 Mean Expected Number 0.000 -strand -11 : -46 AACCCA-- ** bp --AACCCA AC RSP00333 Mean Expected Number 0.001 +strand -185 : -177 CCATACATT AC RSP00663 Mean Expected Number 0.000 -strand -164 : -176 CCCtAATAAATTG AC RSP01032 Mean Expected Number 0.009 -strand -17 : -26 CCAAtATAAG Totally 4 motifs of 4 different REs have been found Description of REs found 16. Group TF: SEF3 /AC: RSP00017//OS: Glycine max /GENE: beta-conglycinin/RE: SEF3-BE /TF: SEF3 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 635. Group RE: SRD motif /AC: RSP00663//OS: Glycine max /GENE: VspB/RE: SRD motif /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: signal recognition particle 9 kDa protein |LOCUS: AT3G49100 |PROD: the same as GENE |18207828..18209432 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.33 C - 0.18 1 taaacgagag agcatgatgg tgaagacgaa cacttgagat tcacagattt 51 gggagaaaca aagttgcaga agttcgaaga agaacggtta gggtttttct 101 ttttagaaat cttaacacta aggaaccggt tcggttttag tcggtttatt 151 ccggtttgat catcactcaa attttttttc tttcttctga aaacacaaat 201 AAAAAGCCGT CTTTTTGCTT CTCTGTTTCT CCGTCGAGTC TCCCGGAGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 +strand -113 : -105 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand -105 : -113 AAACCCTAA AC RSP00860 Mean Expected Number 0.003 -strand -16 : -24 AGAAAGAAA AC RSP01017 Mean Expected Number 0.005 +strand -147 : -140 AGAAACAA AC RSP01303 Mean Expected Number 0.005 -strand -104 : -113 aAAACCCTAA AC RSP01687 Mean Expected Number 0.008 -strand +9 : +3 CGGCTTT Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PRXCB |LOCUS: AT3G49120 |PROD: peroxidase, putative |18218636..18221117 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.38 C - 0.10 1 aatatgtata aataaatttt aaacaattgt caaaaagaca ttataactta 51 tacggttata gttgttaaaa aaaaaactta tacggttata ccaatagata 101 aactgacatt ttagatttga gttttttttt tttttacttt ccatgtagat 151 agcgtggaat aatacctcat ttatatgtat cgttagttga aataattgac 201 AAAAGGAAAC TATTCGTTTG CTGTTCTAGA TAAAAGCCTT TAATTGAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.010 +strand -1 : +6 CAAAAGG AC RSP00104 Mean Expected Number 0.007 +strand -60 : -54 CCATGTA AC RSP00280 Mean Expected Number 0.002 +strand -61 : -52 TCCAtGTAGA AC RSP00960 Mean Expected Number 0.005 -strand -12 : -19 CAACTAAC Totally 4 motifs of 4 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G49180 |PROD: the same as GENE |18240751..18243209 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.32 C - 0.20 1 gcgggagatg gaaacgaaaa gcttatcatc gccattgttc tccaatctaa 51 acgatccgtt actgttaatt atcaatatca cacaaaattt acattatagt 101 cccttaagtt tgtggaaatt aTCAATaaga cacaaaacta ttaatttatc 151 aaattacata catagttcat aaaccctaat ttatagatat cacaaaaccc 201 AGACTTGGAA TCAGTTTCTC TTTACTTCCC TCTTTCTCTG AGCTATGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.004 +strand -180 : -171 GCTTATCaTC AC RSP00279 Mean Expected Number 0.003 -strand -22 : -30 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -30 : -22 AAACCCTAA AC RSP01094 Mean Expected Number 0.005 -strand -45 : -56 TAATTtGATAAA AC RSP01303 Mean Expected Number 0.008 +strand -31 : -22 TAAACCCTAA AC RSP01304 Mean Expected Number 0.005 +strand -31 : -22 TaAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: calmodulin-binding family protein |LOCUS: AT3G49260 |PROD: the same as GENE |18273427..18276965 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +313 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.29 C - 0.21 1 gtaaatacag aattcgatca ttacaaatgt cagaagactt tataacaaat 51 ggaaataaag gcgattggcg ttaaaataag agaagacaaa agtagaaacc 101 tcgtgaactt cgtaaaaaca cttaacggcg tttaaccgaa ccccacgtga 151 ctccgttaat gattttcatt ttatcggtgg tgaaatgagt gagacatcct 201 CTCCTTCTCA ACTTAAGTCT CTCTGTGACT TCTCTCTCTC ACCTCTTCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00640 Mean Expected Number 0.002 -strand -51 : -58 TCACGTGG AC RSP00680 Mean Expected Number 0.008 -strand -43 : -52 TAACgGAGTC AC RSP00864 Mean Expected Number 0.001 -strand +39 : +31 AGAGAGAGA AC RSP00943 Mean Expected Number 0.003 -strand -13 : -23 TCATTTCACcA AC RSP01013 Mean Expected Number 0.006 +strand -155 : -146 CAAATGGAaA AC RSP01596 Mean Expected Number 0.003 +strand -23 : -13 TgGTGAAATGA AC RSP01692 Mean Expected Number 0.005 +strand -188 : -181 TTCGATCA Totally 7 motifs of 7 different REs have been found Description of REs found 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G49360 |PROD: the same as GENE |complement(18314031..18315383) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.31 C - 0.15 1 tttgtttcgg aagatatagt gttatgtaga ataaatccat aacgacgaaa 51 ggaataataa aaggttgtaa tgagtaaact acaaacagaa gaaaggtata 101 agatacattt agatactaat cttccaaaaa acaaatcaag atgtagtttt 151 atagaaaatc atattctttc ttagaagaaa acagattttt ttgtctcatt 201 CACTTGGAAA GAATCCTTCA CTCACTTTCC CTTTAAGAAG CAAGTCTCCT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: Got1-like family protein |LOCUS: AT3G49420 |PROD: the same as GENE |18340372..18342416 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +468 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.27 C - 0.18 1 ttttcacaaa aactcattgt aaccattacg cattggggaa aatgtcatta 51 aaatcttcaa cttatgactg gttctatttg accaaaaaca aaaacttaga 101 ggttatATTG Agaaacagat tgcttaaaga gggaccgaaa aataaaaaca 151 ctaaagaact gaatgaatca acttaagggt agttccggta attcactaaa 201 GGATAAAGTA GAAACCCTAG TTTGAATTTT CACGGCCGAC CTCTCTCTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.010 -strand -118 : -124 GGTCAAA AC RSP01205 Mean Expected Number 0.009 -strand -69 : -78 CCTCTTTAAG Totally 2 motifs of 2 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G49560 |PROD: the same as GENE |18381554..18383060 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.21 C - 0.18 1 catgcttcaa acatcatcta aattcagaca caaaacaagc ttctctatac 51 acacccaact tttttaccta aaaagaatgg agaaattgag caattttcag 101 aaatcagaac tgagtaaaat gtggcaaaga cgataaatgg gcttttttca 151 ggcccagcat atcatatata acccaatggg agatgagaag gagggagaga 201 TAAGACTGAG AAGCAGAGAA CCGAAAGAAG AAAACAAAAC TCTCGAAGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01210 Mean Expected Number 0.003 +strand -59 : -50 CTTTTTTcAG Totally 1 motifs of 1 different REs have been found Description of REs found 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G49580 |PROD: the same as GENE |complement(18386254..18386762) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.22 C - 0.17 1 aaaaaatagt aaattttctc ttttggggtg gtctatgcat acataagcca 51 tgagtatgtt taagtttcaa gtaaggagaa aatattgacc gaaatcaaaa 101 gtgaggagaa ataaaaatca agaagcagat acATTGAacc tggacatgca 151 aaagctacac aaagcgccta ttaaagaaac ataatcaaac cctaacactc 201 AACAAATCAA GAAACAAAGT TAGAACCACA ATCAAATCCT TTTACACAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.004 -strand +46 : +39 TGTAAAAG AC RSP00279 Mean Expected Number 0.005 -strand -6 : -14 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -14 : -6 AAACCCTAA AC RSP00961 Mean Expected Number 0.009 +strand -54 : -47 TGCAAAAG AC RSP01006 Mean Expected Number 0.001 -strand -169 : -175 ACCACCC AC RSP01303 Mean Expected Number 0.008 +strand -15 : -6 cAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G49680 |PROD: the same as GENE |18433644..18436674 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.30 C - 0.18 1 acaatccaaa gagtaccaaa atatatttgg ctatagagag ctatcattgt 51 cttgtacact tgtccatgtt gggctataga tccatatttg tgttgggcta 101 ggctcagttt ttcttaataa cacaaactta cttatcaaac acgtgttgtc 151 tttttggtta tttaagtagt tgacaaacaa aagtacaaat aagctgttag 201 GGCAAAGGAG CAAAAACGAA ACCACAGAGA GAAAGCCTCC GTCTCCCTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.009 +strand -62 : -56 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -55 : -61 ACACGTG AC RSP00782 Mean Expected Number 0.000 +strand -63 : -54 AACACGTGTT AC RSP00782 Mean Expected Number 0.000 -strand -54 : -63 AACACGTGTT AC RSP00891 Mean Expected Number 0.009 +strand -183 : -175 AAAATATAT AC RSP00978 Mean Expected Number 0.002 +strand -63 : -54 AaCACGTGTT AC RSP00978 Mean Expected Number 0.003 -strand -54 : -63 AaCACGTGTT AC RSP01256 Mean Expected Number 0.003 +strand -62 : -55 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -55 : -62 ACACGTGT AC RSP01702 Mean Expected Number 0.008 +strand -63 : -54 AACACGTgTT AC RSP01702 Mean Expected Number 0.007 -strand -54 : -63 AACACGTgTT Totally 11 motifs of 6 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 737. Group TF: G-box binding TF /AC: RSP00782//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 6 /TF: G-box binding TF 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: myb family transcription factor |LOCUS: AT3G49690 |PROD: the same as GENE |18438821..18440186 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.06 T - 0.43 C - 0.21 1 acttatgttg aattaataaa ttaaaacatt taaatttccc taaagttact 51 ttttgatttt tgattttcta tttttattac aactttccta ctttttgaca 101 tcttttctta caaagacttt ttgacatctc cccctccagc tattatatag 151 tctccttttt tcttttctgc attcacataa tatttcccct atatagttta 201 CACAACATCA TACCCACCAA CATATATAAT CTTGATCATA GAGAGATAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.002 +strand +41 : +46 GAGAGA AC RSP00281 Mean Expected Number 0.006 -strand +45 : +41 CTCTC AC RSP00384 Mean Expected Number 0.006 +strand +41 : +45 GAGAG AC RSP01056 Mean Expected Number 0.006 +strand -159 : -149 AAaGTTACTTT Totally 4 motifs of 4 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 272. Group RE: Motif VII /AC: RSP00281//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VII /TF: unknown 369. Group RE: GAGAG motif /AC: RSP00384//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GAGAG motif /TF: runknown TF 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: U-box domain-containing protein |LOCUS: AT3G49810 |PROD: the same as GENE |complement(18485522..18487819) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +552 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.31 C - 0.24 1 tacgcgagtc gagaggacta aatgaccggc tataaccagt gaattcaccg 51 gtcaccttat ctttaatttt tttagatttt ccacccgaat ctttcaacaa 101 atctttaatc tctccccttt tttctccttt ttattttatt caccccattt 151 ttttttcctc tcaaagaaac aaaaacaaaa caatcactca cactacctca 201 GAAGAAGGTA AGAGAGAAAC AAACAAACAA AAGAGAGAGT ACGGGTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.003 +strand -85 : -75 CCTTTTtTCTC AC RSP00445 Mean Expected Number 0.010 +strand +27 : +36 AcAAAAGAGA AC RSP00756 Mean Expected Number 0.008 +strand -14 : -7 CTCACACT AC RSP01017 Mean Expected Number 0.009 +strand -36 : -29 AGAAACAA AC RSP01017 Mean Expected Number 0.009 +strand +15 : +22 AGAAACAA AC RSP01776 Mean Expected Number 0.007 -strand -131 : -141 AaAATTAAAGA Totally 6 motifs of 5 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein, lea32, Arabidopsis thaliana |LOCUS: AT3G49890 |PROD: the same as GENE |18510221..18511705 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.27 C - 0.20 1 tattgaggct ttcattaaat acgaaaatct ccaagggtat tttgataaaa 51 ccccagatat tctggggtaa tttggtagta ctaaaagatt cggggtccat 101 aattaaacta atctctcttc cgtgtcaaaa ttaaacccga cccgaatccg 151 gaaaaagtgt tatctaataa acccttgacg acgttcttct gccggagatt 201 ACGCAGTTCA CGGTAAGACA TAGAAACAAA GTAGAGAGAT TTCACGGCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01091 Mean Expected Number 0.009 +strand +20 : +30 ATAGAAaCAAA Totally 1 motifs of 1 different REs have been found Description of REs found 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CYCD3;3 |LOCUS: AT3G50070 |PROD: cyclin family protein |complement(18576117..18577763) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.13 T - 0.25 C - 0.16 1 gaataaaaca aagaagaagt acggtttcat taattttctc gcgcgccaaa 51 catccgaata ttaaaagaca aaataaaagc agagagagaa aataaaaata 101 aaattaaaaa aaaaacataa aatcttttaa taaaaaaaaa gaaaaaaaaa 151 agaggacaag cgtgaaataa aacccttcac tttctttggc atttgtcttc 201 ACTTCTTTTA TCTCTCTTTC TATCTCACAC AGAGTGAAGA ATCCAGAGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00050 Mean Expected Number 0.000 -strand -38 : -49 ACGCtTGTCCTC AC RSP00861 Mean Expected Number 0.000 -strand +21 : +13 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -120 : -112 AGAGAGAGA AC RSP00876 Mean Expected Number 0.000 +strand -159 : -151 CGCGCCAAA AC RSP01209 Mean Expected Number 0.001 +strand -21 : -12 CTTTCTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 812. Group TF: AtE2F /AC: RSP00876//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 1 E2F (D1) /TF: AtE2F 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MAPKKK20 |LOCUS: AT3G50310 |PROD: protein kinase-related |complement(18659133..18660503) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.30 C - 0.19 1 ataatattga ttttcccaag ttaataaata ttttgttact aaatttcgtt 51 tttagcagcc caacgagaaa aatatcaaat atccgctttc atcacgtgca 101 ttaattaccc caaaaattca agactaagga aaacaaatat cACAATtaaa 151 aataataaaa acttgatagt atataatgaa gaagttccac cataaggcac 201 AATTAACCGT CACGAGCTAC ATGCTCTGTA TCTTCAGATT TCCTAAATAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00966 Mean Expected Number 0.001 -strand -101 : -110 tGCACGTGAT AC RSP01068 Mean Expected Number 0.008 -strand +14 : +6 CGTGACGGT Totally 2 motifs of 2 different REs have been found Description of REs found 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: similar to esterase |LOCUS: AT3G50440 |PROD: the same as GENE |complement(18728292..18729475) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.30 C - 0.16 1 atttttgcat agaaaaataa aactaacact tattttgcaa aaaaacaaaa 51 tcctaaaact acatatagaa acagagggag taagagattc accccatttt 101 tagatttttt agattttttc cttaatctta tactgtaatt attATTGCct 151 tcttggaatc ataaacagat aaagtatgaa acacgtatcc taaccgtcca 201 AATAAGGTCG AATTGGTAAA CCAAGAGTTA TAAGCAGAAC CAGAAAACTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 +strand -3 : +7 CCAAATAAGG AC RSP00284 Mean Expected Number 0.006 +strand -7 : -2 CCGTCC AC RSP00888 Mean Expected Number 0.004 -strand -83 : -91 AAAAATCTA AC RSP00888 Mean Expected Number 0.004 -strand -92 : -100 AAAAATCTA AC RSP01033 Mean Expected Number 0.007 -strand +7 : -3 CCTTATTTGG AC RSP01288 Mean Expected Number 0.005 -strand -13 : -20 ATACGTGT AC RSP01702 Mean Expected Number 0.009 +strand -21 : -12 AACACGTATc Totally 7 motifs of 6 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: late embryogenesis abundant protein |LOCUS: AT3G50790 |PROD: the same as GENE |complement(18890904..18892963) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.25 T - 0.29 C - 0.16 1 aagacacagt gtacagttgc aaaaagtggg gataaaagcc caaggcccat 51 tgttcctacg ggcatagccg catagggttg aaaaatgtag tcgctgtaag 101 taaggatgat tttgttataa taatatattt caagggcttt gATTGCaaat 151 tagtttagat ttcccgacca cataaatgtt gctttgtttt ttcggttagg 201 CAAATTCGTT GTGGTTACCA AAACGACGAC GTGGTGAAGC AAATGGCGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.004 -strand -13 : -22 AaCAAAGCAA AC RSP00792 Mean Expected Number 0.009 -strand -15 : -24 CaAAGCAACA AC RSP00986 Mean Expected Number 0.002 -strand +34 : +27 CCACGTCG Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G50890 |PROD: the same as GENE |18927147..18928309 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +254 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.26 C - 0.16 1 taaaagaaaa tagagagaaa gagagataaa tgcaataatg ggagatggac 51 caaaggtgca ggtggtgaaa gataacaaac atatgacaat gtctcgaaat 101 taagaggcac caccacacat acacacacac tctctctctc tagtaggttt 151 gtgtttttaa aatcaatatt tttgttggat tctcatgtga aataaaactt 201 GATGGGTGAT AGGAAACAAA CACACATACG TCATCATCAT CCTTAATTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.005 +strand +22 : +31 aCACATACGT AC RSP00861 Mean Expected Number 0.005 +strand -185 : -177 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -60 : -68 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -62 : -70 AGAGAGAGA AC RSP00997 Mean Expected Number 0.003 -strand +35 : +26 GATGACGTAT AC RSP01202 Mean Expected Number 0.003 +strand -151 : -144 CCAAAGGT AC RSP01655 Mean Expected Number 0.000 -strand +35 : +24 GATGACGTAtGT Totally 7 motifs of 6 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1473. Group TF: HY5 /AC: RSP01655//OS: Arabidopsis thaliana /GENE: PID (At2g34650)/RE: C/A-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AAA-type ATPase family protein |LOCUS: AT3G50930 |PROD: the same as GENE |18940507..18942820 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +291 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.31 C - 0.16 1 ttgtttgaac aaccaattgt ctttagaaag acataaactc ttgttccaat 51 aaagagccta taccaactct agctattcaa tgacactatt ttagggttta 101 gcatttttgc attattgtCC AATgatacaa aagagagaga tggatatatg 151 aatgtcctct ctatcttgac gcaagcacac aacagctgaa atatcatata 201 GACAAGGACG TTTTAAGAAT CTGGTGGAAT TGATTTGATA GTAGTATACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -110 : -102 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -102 : -110 AAACCCTAA AC RSP00713 Mean Expected Number 0.007 +strand -18 : -12 CAGCTGA AC RSP00864 Mean Expected Number 0.001 +strand -69 : -61 AGAGAGAGA AC RSP01303 Mean Expected Number 0.003 -strand -101 : -110 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -101 : -110 TaAACCCTAA AC RSP01639 Mean Expected Number 0.010 +strand -186 : -177 AATTGTCTTT Totally 7 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G51010 |PROD: the same as GENE |complement(18957681..18959137) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.35 C - 0.17 1 gggaatatca cgtaattctc gccaaaacat ttaatgagat ttggagacaa 51 taattaataa tatccgcacg aattattgat tttagttatt atgagtcttt 101 tctttgagac CCAATgttca attataagcc cttacactat aggcccataa 151 ggcccattag tgtttactag actattcagg gtttagcgaa aaattcttcg 201 TTTCAAGTCT CGAACTTTGT TGGAATCGGC TAAGTGATAA TTTCGAAGCT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATTRX1 |LOCUS: AT3G51030 |PROD: thioredoxin H-type 1 (TRX-H-1) |complement(18961981..18962984) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.27 T - 0.22 C - 0.08 1 tgtgtggtta atttgttaca agtaaaactt tgaggagtaa aagtgtgaat 51 atttatgatt tgggtaaaga aggaaagtag caattggtgg gtgtaattat 101 gggaaacaaa atcacgcgtc gaataaagta gaagagaaaa actATTGAcg 151 ggcaaaattg ggattggtag gtgacgcgca tgctaagtaa ttgaaaaaaa 201 AAAAACACAA GAGGAGAAGA AACAGAACAG AGAAGAAAAA GAGAGAAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00205 Mean Expected Number 0.000 +strand -199 : -186 GTGTGGTTAATtTG AC RSP00377 Mean Expected Number 0.006 -strand -32 : -41 tACCAATCCC AC RSP00651 Mean Expected Number 0.003 -strand -29 : -39 ACCTACCAAtC AC RSP01333 Mean Expected Number 0.000 +strand -200 : -186 TGTGTGGTTAATtTG AC RSP01559 Mean Expected Number 0.004 +strand -27 : -22 ACGCGC Totally 5 motifs of 5 different REs have been found Description of REs found 198. Group TF: GT-1 /AC: RSP00205//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II /TF: GT-1 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 1218. Group TF: BGTF /AC: RSP01333//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: BGTF BS (Box II, wild) /TF: BGTF 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G51130 |PROD: the same as GENE |19005120..19008568 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 1 caattggtca ttactcatta gcttaattga aattatttct gcctatatag 51 cttaattttt cgtaaattta ttagagggag taggtgttaa attctgattg 101 gtggggaagt accatcatat atggataggt caaacaacaa cccaaacccg 151 acccgtgcag caaaagtttg taaaaagagg aactaaagtg gacccgactt 201 AATTCAGAAC TTCAGAAATC AGAAAGCAAA AACAGAATTG TGTATTATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00601 Mean Expected Number 0.000 -strand -95 : -103 CCCCACCAA AC RSP00881 Mean Expected Number 0.009 +strand -68 : -59 AaCAACAACC AC RSP01509 Mean Expected Number 0.001 -strand -99 : -107 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: MUR1 |LOCUS: AT3G51160 |PROD: GDP-D-mannose-4,6-dehydratase (MUR1) |complement(19017989..19019406) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.26 C - 0.23 1 ttgatgagtt tgaccacaaa ataagtaaat cattaacgtg ttatacataa 51 acaaggaaaa tatccaatca atagtcaatt aaaaaaaact taaagaccaa 101 caaagattac caaactaccc ttatcctgaa ATTGActaaa atacccctcc 151 gtcttcaacc tctctgaccc tatttaaatc agctaaaact ctaacagccc 201 AATTCAACAC GGATTTTCAA CACAGAGCTG ACGTTAGCAT TTGTCTCTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00918 Mean Expected Number 0.001 +strand +27 : +36 GCTGACGTTA Totally 1 motifs of 1 different REs have been found Description of REs found 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F3H |LOCUS: AT3G51240 |PROD: |19036243..19037918 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +145 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.34 C - 0.12 1 ccctatcata taatagtaat gtgatacgtt ggaatgtagc caaaaagcat 51 aaaaaataaa tagataatta agtttataat gttttcctac aaaatattat 101 tataccgtat gtatttttta ttttattttc tgaagttaaa aacagatgta 151 gttagttgag taaattgtgt tctagaaaga gaagagagag cagtagtacc 201 GTGGTAGGTA GCTAGCGACC TCTTCGTTCG TCAGTCATCA CAAGCTTTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00824 Mean Expected Number 0.000 -strand +12 : +2 GCTACCTACCa AC RSP00826 Mean Expected Number 0.000 -strand +12 : +2 GCTACCTACCA AC RSP00827 Mean Expected Number 0.000 -strand +19 : -6 GTCGCTAGCTACCTACCACGGTACT AC RSP00861 Mean Expected Number 0.003 +strand -27 : -19 AGAAAGAGA AC RSP00933 Mean Expected Number 0.005 +strand -128 : -116 TTTATAATgTTTT AC RSP00960 Mean Expected Number 0.007 -strand -43 : -50 CAACTAAC AC RSP01529 Mean Expected Number 0.001 -strand +12 : +2 GCTACCTaCCA AC RSP01529 Mean Expected Number 0.001 -strand -161 : -171 GCTACaTTCCA AC RSP01540 Mean Expected Number 0.000 +strand -190 : -155 TAATAGTAATGTGATACGTTGGAATGTAGCCAAAAA Totally 9 motifs of 8 different REs have been found Description of REs found 770. Group TF: R2R3-type MYB /AC: RSP00824//OS: Arabidopsis thaliana /GENE: CFI/RE: MRE-core (AtCFI) /TF: R2R3-type MYB 772. Group TF: R2R3-type MYB /AC: RSP00826//OS: Arabidopsis thaliana /GENE: F3H/RE: MRE-core (AtF3H) /TF: R2R3-type MYB 773. Group TF: R2R3-type MYB /AC: RSP00827//OS: Arabidopsis thaliana /GENE: F3H/RE: MRE (AtF3H) /TF: R2R3-type MYB 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 1376. Group RE: Box I /AC: RSP01529//OS: Pisum sativum /GENE: PsCHS3/RE: Box I /TF: unknown ||Identical REs AC: RSP01530 RSP01531 1382. Group TF: HY5 /AC: RSP01540//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE (-319) /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PAD1 |LOCUS: AT3G51260 |PROD: 20S proteasome alpha subunit D (PAD1) |19041974..19044043 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.27 T - 0.30 C - 0.14 1 tttgacaaaa aacaatgtta ggagttttaa tgttttgaag aagtgggcca 51 gatgtttgga gttttaggcc aatgtagctc atcttgggcc cagtacagaa 101 ataaatccag tgatgattct ttctgATTGG ctggaaggtg tgtgtacgtg 151 aacctgtccg caggtgatta aaacagagct gggcttttgg cttgtcgcct 201 AAGTCGGGAA TCGTTTACTG TGAAATAAAA ACGAGAGAGA GTTTTTGAAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: zinc finger (DHHC type) family protein |LOCUS: AT3G51390 |PROD: the same as GENE |19086555..19089096 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.11 T - 0.38 C - 0.28 1 ttgttattgg gcatgaaaac aaggcccaac tcaagtctat ctcccccact 51 tgttcatctt ctattgtctt gttgcgagtt tgcgacttaa acagtaatta 101 aattactaat tacGCAATaa tggcggatta atcgaaccta ctctctctct 151 ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct 201 CTCGTGCATC TCCATAAACT ATCTTCAAAG ATTAAATTTT GAAGATCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01020 Mean Expected Number 0.006 +strand -188 : -182 ATGAAAA AC RSP01283 Mean Expected Number 0.000 -strand +3 : -14 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +1 : -16 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -2 : -18 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -4 : -20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -6 : -22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -8 : -24 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -10 : -26 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -12 : -28 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -14 : -30 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -16 : -32 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -18 : -34 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -20 : -36 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -22 : -38 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -24 : -40 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -26 : -42 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -28 : -44 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -30 : -46 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -32 : -48 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -34 : -50 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -36 : -52 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -38 : -54 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -40 : -56 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -42 : -58 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -44 : -60 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -46 : -62 GAGAGAGAGAGAGAGtA Totally 26 motifs of 2 different REs have been found Description of REs found 945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: strictosidine synthase family protein |LOCUS: AT3G51420 |PROD: the same as GENE |19095014..19096837 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.29 C - 0.20 1 aaaacacaaa aagtccataa gttaaacact gggcctgaca atttaggccc 51 atatactgaa ggaaaacgag tctataaata attgggccta atgaaatata 101 aaagcccacg atactagatt atcgaatggt ggtccctatt agttacgtaa 151 cgtacgaaga tttatctaca agtttgaatc actccaaaaa tttaaaattc 201 AGTGTTCACC ATTTTTTATT TTTCTCCACA AACCCAATCT TTCTACAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.010 -strand -13 : -20 TTTGGAGT AC RSP00895 Mean Expected Number 0.000 +strand -72 : -65 GTGGTCCC AC RSP01296 Mean Expected Number 0.008 +strand -129 : -121 CTATAAATA Totally 3 motifs of 3 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: YLS2 |LOCUS: AT3G51430 |PROD: strictosidine synthase, putative (YLS2) |19097444..19099089 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.27 C - 0.20 1 acccaaaaaa aataaatgta aagtcgtgta cagtgaatat tactctgttt 51 tcaactccag aaaacataat tgggcctatt gggaatataa ttaaagccca 101 cgagattcga ctagcgagag ttgttgttgg ttacgtaatt tagcgcacta 151 cggaacaaag aagaccaaat ttatacgagt caacactcaa cagcgatttg 201 ATCTGCGATT TGATCATCAA CAACAATCAC TCCAAATTTT GTCTGCTCAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.009 -strand +36 : +29 TTTGGAGT AC RSP00495 Mean Expected Number 0.006 +strand -184 : -177 TGTAAAGT Totally 2 motifs of 2 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: strictosidine synthase family protein |LOCUS: AT3G51450 |PROD: the same as GENE |19101947..19103482 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.32 C - 0.22 1 aggcaaccca ttgtccatac aatattggcc ctactggtaa catagtaaaa 51 ccccacgaga tttcgactaa tagttggtta caacttacaa gggactagag 101 tcaaagatta ttatgagtca acgatgattt gcgatttcat cattaaatac 151 acgtgtttaa tttagttgtt tttctcttca atcacaagtt cacaactaca 201 AAATTGGCAT GTTCACCATT TTTCCACAAA CTCAAATTTG CTCCAATGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.008 +strand -52 : -46 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -45 : -51 ACACGTG AC RSP00817 Mean Expected Number 0.003 +strand -53 : -44 TACACGTGtT AC RSP01256 Mean Expected Number 0.002 +strand -52 : -45 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -45 : -52 ACACGTGT AC RSP01527 Mean Expected Number 0.002 +strand +23 : +34 TCcACAAACTCA AC RSP01715 Mean Expected Number 0.001 -strand -43 : -54 AAACACGTgTAT Totally 7 motifs of 5 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1523. Group TF: STF1/HY5 /AC: RSP01715//OS: Arabidopsis thaliana /GENE: ARF6 (At1g30330)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G51510 |PROD: the same as GENE |19120041..19121030 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.33 C - 0.19 1 tcgagttaat acaatggttt gggagtaaag acttaaactt gctacagttt 51 ttactagatt ctagtgctaa atttaaccaa aactgtgacc aaatgtcgtt 101 tatttgcacc acgtgtcctt catccacaac agaatgatga tggattagat 151 atttctattc aaaaactata acgtgtggct gcaaatcgat tcaccgcttc 201 AGACTCTGTT TTAGACCAAA GTCGAGTGAG TGCTTTCATC TTCTTCTTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.001 +strand -92 : -83 CCACGTGtCC AC RSP00204 Mean Expected Number 0.001 -strand -84 : -93 GACACGTGGt AC RSP00235 Mean Expected Number 0.001 +strand -195 : -184 TTAATaCAATGG AC RSP00340 Mean Expected Number 0.004 +strand -93 : -84 aCCACGTGTC AC RSP00524 Mean Expected Number 0.009 -strand -85 : -91 ACACGTG AC RSP00680 Mean Expected Number 0.010 -strand +11 : +2 aAACAGAGTC AC RSP01035 Mean Expected Number 0.009 +strand -90 : -84 ACGTGTC AC RSP01255 Mean Expected Number 0.002 -strand -85 : -92 ACACGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: diacylglycerol acyltransferase family |LOCUS: AT3G51520 |PROD: the same as GENE |19121628..19123739 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.33 C - 0.15 1 aatcaatgtc ctttggccca atattagctt taacaaaggc ttaacctttt 51 gaaaactcca gttaggcaat aattattacg ggtcaaatga caaagaatga 101 accttgtcgg gctctttaaa gatgggttgt tgtataaaaa gttgggtagt 151 taaaagattg gttatttggg ctctgcactc aagtgagaga gaagatagat 201 AGATCTGAGT AGAATCTTCG ATTCATTATT CGTTGTCGTC GTTCATCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01031 Mean Expected Number 0.008 +strand +11 : +18 AGAATCTT AC RSP01598 Mean Expected Number 0.007 -strand -109 : -116 TGTCATTT Totally 2 motifs of 2 different REs have been found Description of REs found 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LTP5 |LOCUS: AT3G51600 |PROD: nonspecific lipid transfer protein 5 (LTP5) |complement(19149373..19150231) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +128 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.23 C - 0.18 1 tttgtaccag cgaggccaga cacagtttca gaaaaaaaaa aaaaaaaagg 51 atgtgtatac aagagtgaat tacattttta tatagtatat agtatagatc 101 tgacaaaacg gagagtacgt agtaattaaa actacaaaag cgaaagataa 151 gagaagagaa agcaatgcaa taaatgaaac caaccaccaa ctaacctcac 201 ACCTTCTACT TTCATGCATT TGCACTCATA AGCTCTCTCT ATATAAACCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.009 +strand -57 : -49 AAGATAAGA AC RSP01185 Mean Expected Number 0.002 +strand -14 : -3 CCAACTAACCtC AC RSP01470 Mean Expected Number 0.004 +strand +12 : +21 TCATGCATtT AC RSP01755 Mean Expected Number 0.004 +strand -20 : -13 CAACCACC Totally 4 motifs of 4 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G51610 |PROD: the same as GENE |complement(19150536..19153057) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.33 C - 0.22 1 atatgttaaa ccatgtctct ttttttttgt tctgatataa gttgattttt 51 tggtttcgtc aataatcagt taccaggccc tccgaccaaa acaaatatca 101 gttactaggc cctatacctg gtcaaaactg agttggaaAC AATaaagttg 151 ggcctgatat tttggcccaa taataacacg gatgagagtt ctcagttctc 201 ACATTTGACA TCCTCCGCTT CAATTCTAAA TCTCCCGGCG AAGAAAATTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 -strand -176 : -185 AAAAAAGAGA AC RSP01640 Mean Expected Number 0.007 +strand -190 : -181 CcATGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G51700 |PROD: the same as GENE |complement(19190245..19192168) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.13 T - 0.27 C - 0.16 1 taggggaatg agagaaaaag atctccgtta cttaaagttt aaacaattaa 51 ttagaatttc ctttcgaaat taaggaaaga ataagaaaag gaaatcctaa 101 ttatactgat acttaaaact tccgtaagag taagaacact atctataatt 151 ttagatttta tacgcttaca aaagctacac atactttcgt atttagccaa 201 ATTCATAACA AAAAAACAAA AAAGATTCAC AAACCGCTAC AATAATGGCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01092 Mean Expected Number 0.006 -strand -40 : -50 ATAaAATCTAA Totally 1 motifs of 1 different REs have been found Description of REs found 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: saposin B domain-containing protein |LOCUS: AT3G51730 |PROD: the same as GENE |19197645..19199670 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +304 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.37 C - 0.09 1 agagtaagaa gaagaataag aagaagaaga tagctttgaa cttaagttgt 51 taaaagagtg attgaaatgg tctaatcttt acattaggac ttgttgtttg 101 tgtgttatct atttgttttc gatgtgtttA TTGGtgtatg ctaaatattg 151 aaatgagatg tgatttgtta tatctttatg cttattccaa agtccaaact 201 AATTGCATAT TCGAAGATAA TAGCCACATG TATGAGATGA CGTGGTTGGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.002 +strand +38 : +45 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand +45 : +38 CCACGTCA AC RSP00394 Mean Expected Number 0.010 -strand -118 : -124 TGTAAAG AC RSP00596 Mean Expected Number 0.004 +strand +23 : +28 GCCACA AC RSP00913 Mean Expected Number 0.005 +strand +36 : +45 GATGACgTGG AC RSP00915 Mean Expected Number 0.009 +strand +36 : +45 GATGAcGTGG AC RSP00916 Mean Expected Number 0.005 +strand +36 : +45 GATGACGTGg AC RSP00997 Mean Expected Number 0.006 +strand +36 : +45 GATGACGTGg AC RSP01275 Mean Expected Number 0.004 -strand +46 : +37 aCCACGTCAT AC RSP01470 Mean Expected Number 0.005 -strand +35 : +26 TCATaCATGT Totally 10 motifs of 10 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: BAG domain-containing protein |LOCUS: AT3G51780 |PROD: the same as GENE |complement(19217745..19219260) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.34 C - 0.15 1 tttttttctg acgtttcaca aatcatcatc atatgtgaaa aaccaaaaca 51 tctatattaa gaagaaaaaa aatattgtta caatttctga aaatatttgg 101 ttcatttagt ccttaaaaat tctaattacc aaaaaagaca aatatataac 151 aattgaaaca catgtgtgtt atcaggagaa tttgtatgtt ttgaggaggt 201 GTGCATCATC CGTCTATCAA TACCCTGACA AGGAAAACCC TAATTTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.006 +strand -75 : -60 TTACCAAAAAAGaCAA AC RSP00080 Mean Expected Number 0.006 -strand -60 : -75 TTGtCTTTTTTGGTAA AC RSP00279 Mean Expected Number 0.002 -strand +43 : +35 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +35 : +43 AAACCCTAA AC RSP01303 Mean Expected Number 0.005 +strand +34 : +43 aAAACCCTAA AC RSP01469 Mean Expected Number 0.006 +strand -43 : -34 aCACATGTGT AC RSP01469 Mean Expected Number 0.008 -strand -34 : -43 aCACATGTGT Totally 7 motifs of 5 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ACX4 |LOCUS: AT3G51840 |PROD: short-chain acyl-CoA oxidase |complement(19236337..19240140) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.32 C - 0.19 1 gaatagcaac aagttatgtt catttcgctg tcgtttaatt caacaatgaa 51 acgttaacga aacgattttg tcgagatttt taaacgtctt tttcaggttc 101 tacggctaaa attcctaaca tttcatcacc tgtcgttatc gttaatatcg 151 tccttgtcag cagaaaaaaa ttgaaatcag gataagttga taacttctat 201 GAAAAAAACA TTATCTTACA AAAATCCAAA TACTCCGACT TAACCGGGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00698 Mean Expected Number 0.006 -strand -159 : -169 TGAATTAAaCG AC RSP00985 Mean Expected Number 0.006 +strand -189 : -180 AGTTAtGTTC AC RSP01086 Mean Expected Number 0.008 -strand -144 : -153 TTaACGTTTC Totally 3 motifs of 3 different REs have been found Description of REs found 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G51950 |PROD: the same as GENE |complement(19288756..19292304) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +919 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.29 C - 0.21 1 aaatgagaaa gagacagtag gagagagtgg agaccccagc gatacagctg 51 gtctgcatat caatcaccgg cgcgtgacca acacatccca acggaaggcg 101 cgtgtatctt tcctgtccga atgaacaaaa aaaaaaaaat ggggttgtgt 151 cagagaacgt gcaatgcaac catcttttgt ttttaatttg ctttttaaaa 201 ACAGTTTATT ACACAATCTC TCTGTGTTTT TTCTATCTCT CTCTTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 -strand +49 : +40 AAgAAAGAGA AC RSP00523 Mean Expected Number 0.007 -strand -96 : -102 ACACGCG AC RSP00861 Mean Expected Number 0.001 +strand -195 : -187 AGAAAGAGA AC RSP00861 Mean Expected Number 0.001 -strand +48 : +40 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +44 : +36 AGAGAGAGA Totally 5 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G52070 |PROD: the same as GENE |19323696..19324444 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.36 C - 0.21 1 tcggtttaga aatcgaaaca aaccgaatta gttgaaacga accgaataga 51 aattcggcca atttggtttt gcattggcgt gtaccttgtg actacatgtg 101 tgtgtgttag atgagatcta tccacccatt tttcaaatca tttttgtcgt 151 taagctatca agattctgat attttcctgc tcacttttga ttcccaaaac 201 AAAAAACTTT CTTCAATTAT TCTATTCATC TTCTCATGGC GGCTCTCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.002 -strand +44 : +38 AGCCGCC AC RSP00438 Mean Expected Number 0.007 +strand +38 : +43 GGCGGC AC RSP00716 Mean Expected Number 0.002 -strand -130 : -138 CAAAACCAA AC RSP00807 Mean Expected Number 0.007 -strand +43 : +38 GCCGCC AC RSP01011 Mean Expected Number 0.000 -strand +44 : +36 AGCCGCCAT AC RSP01031 Mean Expected Number 0.008 -strand -34 : -41 AGAATCTT AC RSP01064 Mean Expected Number 0.000 -strand -76 : -87 gTGGATAGATCT Totally 7 motifs of 7 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 936. Group TF: AtEBP /AC: RSP01011//OS: Arabidopsis thaliana /GENE: rd29A/RE: AtEBP BS /TF: AtEBP 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 983. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01064//OS: Arabidopsis thaliana /GENE: SEX1/RE: Fungus RE /TF: homeodomain TF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G52180 |PROD: the same as GENE |complement(19360630..19364574) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.23 T - 0.34 C - 0.16 1 caattcaata ttgacggtgc tgatgtggca gcagatatta gttttgtgaa 51 gagggtgttt ttgttattgt ggaaagttgg agactttttc tagtaatgtg 101 ttccacttta cgtaacaaac aaaagtgATT GCattcccgg tgcagaccgt 151 ggggtcccaa ttgtatcgtc gtgagtcgcg tgaccgtcag agtcacactc 201 ACAAACATTT TTGGACATGA ATTGAAAATT ATTATAATTA CCAGATTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.009 +strand -87 : -81 AACAAAC AC RSP00248 Mean Expected Number 0.003 -strand -172 : -181 GCCACaTCAG AC RSP00509 Mean Expected Number 0.001 +strand +33 : +44 TATAAtTACCAG AC RSP00654 Mean Expected Number 0.009 -strand -144 : -153 CACCCtCTTC AC RSP00858 Mean Expected Number 0.005 -strand +42 : +35 GGTAATTA AC RSP00915 Mean Expected Number 0.006 +strand -182 : -173 GCTGATGTGG AC RSP01711 Mean Expected Number 0.006 -strand -108 : -117 CTAGAAAAAG Totally 7 motifs of 7 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G52190 |PROD: the same as GENE |complement(19364950..19368036) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.36 C - 0.24 1 gtctgctata gattacggaa gcacgatgtg acctaacttg tttgtattaa 51 attcggcatc ggaacatgga tcttaaggaa tatcctttcc caccaccgca 101 aatgtccgtt tgttaaatct gagattttTC AATcccatta tataataact 151 caacaaaatc tctctgtcca atttccaaag tcaactcctt tttggttttt 201 GTTTTACTTT CTGTTTTCCT CTTCTCTACT CTGGAACAAC AACTACACAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00755 Mean Expected Number 0.009 +strand -125 : -119 AGGAATA AC RSP01071 Mean Expected Number 0.008 -strand -89 : -98 CAAACGgACA Totally 2 motifs of 2 different REs have been found Description of REs found 717. Group RE: submotif A /AC: RSP00755//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif A /TF: unknown 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CP33 |LOCUS: AT3G52380 |PROD: 33 kDa ribonucleoprotein, chloroplast |19432375..19434072 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +222 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.36 C - 0.19 1 ctgattttct ccaaattctt tagaattctc tctttgctaa tcctgaccaa 51 tatgagaaat tcaccatttt tttgctcata ggtgctatca ataacagttt 101 caagtttcaA CAATtcacca tttatataac attaccaaca gtccaacact 151 agtaacataa tcaccaaaat atattagtaa taaattttca tcacagcttt 201 ATATTTTTGT GATTAGAAAT TAGGATCTTA CAGAAATCTT TCAAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01130 Mean Expected Number 0.009 +strand -117 : -103 GCT-- +8 bp --CAGT Totally 1 motifs of 1 different REs have been found Description of REs found 1049. Group TF: ZPT2-2 /AC: RSP01130//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 4 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G52480 |PROD: the same as GENE |complement(19463232..19464140) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.32 C - 0.26 1 catgactcca aatagtaagt cgtgtcgtgt accttcgctt tcaatcccga 51 tttgactatt aatgatcttt ctaaccggaa cctactcagc aactcttttc 101 cgattatgac acttcaacta cCCAATaatt agtaataatt tacgagacta 151 ccccacttca gtttctgttc ttatcttaaa acatcatatc cataattacg 201 ACAAACGAAA CGACGCAGTA TTAAGGTTAC TCTCTCTCAA ACTCTCGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.006 -strand -24 : -32 AAGATAAGA Totally 1 motifs of 1 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ovate family protein |LOCUS: AT3G52540 |PROD: the same as GENE |complement(19499530..19500828) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +286 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.33 C - 0.12 1 aacagtgacg aatttgtgta ctactaacgg aaaactatca aatgcatgaa 51 aaaaatagtt aagttttgaa gtgattttat atactttaag gactcatcca 101 tgtattaACA ATaaataaat ttaatgtaat attttaagat ttcaaatata 151 tatagatttt ggatattcaa atatcaaaat tgtacttaca aaaattgaat 201 GATCCCCAAC CAAACAACAA TAAATTTGGT GCCAATAATT AAATACACTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.009 +strand -103 : -97 CCATGTA AC RSP00416 Mean Expected Number 0.009 +strand -106 : -100 CATCCAT AC RSP00792 Mean Expected Number 0.004 +strand +10 : +19 CCAAaCAACA AC RSP01435 Mean Expected Number 0.000 +strand +3 : +12 TCCCCAACCA AC RSP01470 Mean Expected Number 0.004 +strand -107 : -98 TCATcCATGT AC RSP01470 Mean Expected Number 0.007 -strand -152 : -161 TCATGCATtT Totally 6 motifs of 5 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ubiquitin-conjugating enzyme family protein |LOCUS: AT3G52560 |PROD: the same as GENE |complement(19505359..19507058) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.35 C - 0.17 1 tgtatataga aattttgcat tgctagttaa aataataaca aatagatgtt 51 gtcaaaactc gaaaataaaa ggggtgtttc tgtagttatc ataatttaag 101 gaattatatg atagaaaaac aaatttgggc ggtaaatttg aaaaaaataa 151 ctttttccag tctccccaaa agtacccgat ttgccaaatt tgaccctccc 201 ATTTTAGCTT TCTGTCTATT CACCAGATTC TCTCTATTCG ATTCTCCCTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: monodehydroascorbate reductase, putative |LOCUS: AT3G52880 |PROD: the same as GENE |complement(19612190..19615431) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.34 C - 0.24 1 ggttaattaa aaaagactta agaatcaatc agtcctttat ttccgtcctt 51 aattcttttt actttccaca tatagcatga accacgacgg ttggataaat 101 tcaacggtcA CAATattgcc acgtgtaagc tttgtatcta catcctccaa 151 tcaacggcca agtcttggtt aagttttagc caattagagt cactcagctc 201 ATATTAGCCT TTTTGCTCTT TCTTTGCTTC TCTAACAAAC CAACTTCAGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -75 : -83 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -76 : -83 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -74 : -83 tACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -73 : -84 TtACACGTGGCA AC RSP00431 Mean Expected Number 0.008 +strand -118 : -107 cACGACGGTTGG AC RSP00447 Mean Expected Number 0.009 -strand +28 : +19 AGCAAAGaAA AC RSP00524 Mean Expected Number 0.009 -strand -75 : -81 ACACGTG AC RSP00530 Mean Expected Number 0.001 -strand -185 : -196 TCTTTTTTAAtT AC RSP00682 Mean Expected Number 0.001 +strand -83 : -74 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -74 : -83 TACACGTGGC AC RSP00936 Mean Expected Number 0.000 +strand -84 : -73 TGCCACGTGTaA AC RSP00938 Mean Expected Number 0.000 +strand -84 : -73 TGCCACGTGtAA AC RSP01034 Mean Expected Number 0.006 -strand -77 : -83 ACGTGGC AC RSP01094 Mean Expected Number 0.004 -strand -15 : -26 TAATTGGcTAAA AC RSP01255 Mean Expected Number 0.002 -strand -75 : -82 ACACGTGG AC RSP01593 Mean Expected Number 0.000 -strand -74 : -85 TACACGTGGCAa Totally 16 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G52920 |PROD: the same as GENE |19635321..19637236 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +258 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.17 T - 0.24 C - 0.12 1 taggattaga tcaaggctaa taatttgaac caaacatttt tttttgtatt 51 ttgttgtata taaaaagaga aaaacaatct ctagacgaca cgtaattaaa 101 agtgtATTGT tttgagaaat attatacgaa cttaacggat acgtaaaaca 151 aaccattaaa taataaaccc aaaaacagaa aagagagtga gaaagcaaac 201 AAAATATAAA AGAGTGAGAA GAAGAGGACA GAGAGAAGAA ACCATTACCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.002 -strand -107 : -114 TACGTGTC AC RSP01035 Mean Expected Number 0.005 -strand -108 : -114 ACGTGTC AC RSP01261 Mean Expected Number 0.007 -strand -106 : -113 TTACGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pyruvate kinase, putative |LOCUS: AT3G52990 |PROD: the same as GENE |19659858..19663479 |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +166 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.38 C - 0.09 1 ttgcttttac tttctacatt agtgatggta acaaaaatca aaagagaaaa 51 ttactagggt ttaagaaaat aagaaaaaca acatagggta taatttgaat 101 taaATTGAga atgtttaggt taaagagaaa ataaaaaagc gtcgacttgt 151 tttctttttt gtcgttgttg ttgttgtgag caacttttat ttatttattt 201 GTCTTCCGTT GCGTGAGATA TTATTGAACG GTGTTTGTTA TTCGGAGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.008 -strand +37 : +30 CAAACACC Totally 1 motifs of 1 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: galactose-binding lectin family protein |LOCUS: AT3G53080 |PROD: the same as GENE |19688974..19689717 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.25 C - 0.20 1 gaatgccttt caccaaactc ctccgaaaac caagagaatg gaaaaatata 51 gaactacatt gagaggaaat ttcgtggcca catttacaaa cgaattcgcc 101 tctccaaagt ttgattaatc taagtttaac gaaagcaaaa gtgtaactac 151 atccataaga agtctactta aacaaatgtc aataccttga ttttgataac 201 ATAAAACAAA AACAAAAATG GAAACTTTAC AATGTCGTCA TCAGCATGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.005 -strand -56 : -66 TACACTTTTGc AC RSP01621 Mean Expected Number 0.001 -strand -56 : -65 TACACTTTTG Totally 2 motifs of 2 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: pectate lyase family protein |LOCUS: AT3G53190 |PROD: the same as GENE |19725019..19728568 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.15 T - 0.18 C - 0.21 1 aattagatat tagtacaata aaagaaaaaa ggaaaaattg aagaccgttt 51 cctcgagaca agcagattct caatcctcga gactgtcagt ggaaaacaac 101 ttcactctct ctcttcaaaa agaaaaacaa aaatacaaaa gccaaggaaa 151 gccattatta caaaagcaat aacacactgt aaaaaagcca ctcacgaaca 201 CTCCTCAGTA ACCAGAGAGA GAAGAAGAAG AACAACAAGC CATGTCTTAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand +14 : +22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -87 : -95 AGAGAGAGA AC RSP01025 Mean Expected Number 0.009 -strand -131 : -137 AGAATCT AC RSP01230 Mean Expected Number 0.009 +strand -156 : -151 CCGTTT AC RSP01602 Mean Expected Number 0.003 +strand -133 : -126 TCTCAATC AC RSP01735 Mean Expected Number 0.001 +strand -137 : -129 AGATTCTCA Totally 6 motifs of 5 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 950. Group RE: R2 /AC: RSP01025//OS: Arabidopsis thaliana /GENE: GapB/RE: R2 /TF: unknown 1135. Group RE: A-box (1) /AC: RSP01230//OS: Arabidopsis thaliana /GENE: C4H/RE: A-box (1) /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G53232 |PROD: the same as GENE |complement(19741956..19742401) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.35 C - 0.23 1 catatatcac attaatattc ttctagaatg cgtaaggtta catatataca 51 gtattagtgt tacctatttc atagaaaaaa aaagaaaata tgtcacataT 101 CAATcattta ttgtaccaaa gcaagtgacc ctcgttctaa ttcataggct 151 tagctctctc catatattga ctctttctat gtcgcaatat gtctccatta 201 ATAAACTCTC CCTCTCTTTC TCCGTCTTCT CACATTTCCA CAACAAAGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 +strand -123 : -114 AAAAAAGAaA AC RSP00447 Mean Expected Number 0.003 +strand -86 : -77 AcCAAAGCAA AC RSP00572 Mean Expected Number 0.008 +strand -113 : -106 ATATGTCA AC RSP00861 Mean Expected Number 0.006 -strand +21 : +13 AGAAAGAGA AC RSP01237 Mean Expected Number 0.007 -strand -150 : -159 CTgTATATAT AC RSP01499 Mean Expected Number 0.008 +strand +18 : +27 TTCtCCGTCT AC RSP01642 Mean Expected Number 0.007 +strand -14 : -5 AtATGTCTCC Totally 7 motifs of 7 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G53270 |PROD: the same as GENE |complement(19761025..19764176) |SUPPORT | 9 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +1030 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.36 C - 0.14 1 ctttatattt taccaaaaaa aaaaaaaaac tcgtaacgtg tagttgtctc 51 aaaagtttcg gtcttgactt ttgggacttg agagattgta tagacttttc 101 ttcaaaaaat gtgtcaaaat ctgatcgact aaaaagtcaa gaagtattag 151 actttacatg ttaggttata cttatacata catattaaat atatgtgcat 201 ATAATATATG GGTTTTTCTT TCCTTCTTCA TTTATGAAAC GCAAAAAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.008 -strand -34 : -43 AACCTAACaT AC RSP01757 Mean Expected Number 0.002 -strand -133 : -140 GTCAAGAC Totally 2 motifs of 2 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: transcriptional factor B3 family protein |LOCUS: AT3G53310 |PROD: the same as GENE |complement(19777642..19779396) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.12 T - 0.37 C - 0.25 1 agtcaagcac caattagaaa tcagcttctc ttttcttttt tactagaatt 51 tatgggttaa actgcaaaaa tcataaagct ttgagatagt acagtactct 101 gttttgtaca agaacgcagc agaggtcttc tttgactcat ttctctctct 151 ctttctcctt taaactctga accttcaacg ttatcttcct ctcactagct 201 AAGAAACCCA TTTCGATTCT CTCTCTCTCT CTCGTTTCCA ACATCATTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00727 Mean Expected Number 0.005 -strand -193 : -199 GCTTGAC AC RSP00735 Mean Expected Number 0.008 +strand -135 : -128 AAAAATCA AC RSP00861 Mean Expected Number 0.010 -strand -45 : -53 AGAAAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +30 : +22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +28 : +20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand +26 : +18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand -49 : -57 AGAGAGAGA AC RSP00864 Mean Expected Number 0.007 -strand -51 : -59 AGAGAGAGA AC RSP00999 Mean Expected Number 0.010 +strand -9 : +2 TCACTAgCTAA AC RSP01283 Mean Expected Number 0.000 -strand +33 : +17 GAGAGAGAGAGAGAGAA AC RSP01283 Mean Expected Number 0.000 -strand -44 : -60 GAGAaAGAGAGAGAGAA Totally 12 motifs of 6 different REs have been found Description of REs found 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-binding S1FA family protein |LOCUS: AT3G53370 |PROD: the same as GENE |complement(19798872..19799821) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.30 C - 0.17 1 aagctgaact aaaaccagat caaacaacct tagttttggt agatataata 51 cgggcctaac ctagcaaaac aaaagatacg gattgaaatc gaaataccta 101 aaaagtaagg ggtccaaaat aatatttatg gattagtgaa agtggcgatg 151 tagtggataa aacacgtgtg tatattatct ctgtgtgagt ttgtttgcgt 201 CTTATTAATC TCTGTGTCGA AAACAGATCC TCGTTTCCTT TCCTCCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.009 -strand -156 : -165 TAtCTACCAA AC RSP00524 Mean Expected Number 0.009 +strand -39 : -33 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -32 : -38 ACACGTG AC RSP01058 Mean Expected Number 0.005 +strand -50 : -43 TAGTGGAT AC RSP01256 Mean Expected Number 0.003 +strand -39 : -32 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -32 : -39 ACACGTGT Totally 6 motifs of 4 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G53410 |PROD: the same as GENE |complement(19811930..19813298) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.23 T - 0.31 C - 0.18 1 gagagaagct ttagagaaag atggagctat cagcggagag aggagatcaa 51 cagaatcttc gagcgcaagt aatcgttttg agttgaaata aatatagggt 101 aaaactggta ttttatatgg gccgatacgt gtggccctgt atcttagccc 151 acaaagttag ttgacctgct tttctgatca tcttcctccc actctctttc 201 ATCTTTTTGT AATCGATTTG CAATTTCAAT TTCGCAAAGT TGGATCATGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.004 +strand -15 : -9 CTCCCAC AC RSP00960 Mean Expected Number 0.008 -strand -38 : -45 CAACTAAC AC RSP01031 Mean Expected Number 0.007 +strand -149 : -142 AGAATCTT AC RSP01288 Mean Expected Number 0.005 +strand -76 : -69 ATACGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: chloroplast lumen common family protein |LOCUS: AT3G53560 |PROD: the same as GENE |complement(19870605..19872009) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.33 C - 0.20 1 atggctattg taagagttat taaaagttac tttacaccac aaagtgaaat 51 gttaaaccat ttattgggtt ttttggatag gtcaaaacgc agcgtgaggt 101 gaggcccaTC AATgaccaaa acgctgtcgt cgtatctgca gcgaggagag 151 aatattcgga atcgaaaggc ttcatcttct tcttcttcac ctatctcttt 201 ACTACTAGCT CAGGGTTTTT ACTTTTCTAG GGTTTATCTA TCTCATTCCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 -strand +27 : +16 gAAAAGTAAAAA AC RSP00055 Mean Expected Number 0.002 +strand -188 : -177 AGAgTTATTAAA AC RSP00495 Mean Expected Number 0.007 -strand -165 : -172 TGTAAAGT AC RSP00734 Mean Expected Number 0.002 +strand -118 : -111 CAAAACGC AC RSP00734 Mean Expected Number 0.002 +strand -84 : -77 CAAAACGC AC RSP01056 Mean Expected Number 0.004 +strand -178 : -168 AAaGTTACTTT AC RSP01601 Mean Expected Number 0.004 -strand -152 : -159 TTTCACTT Totally 7 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATRAB8 |LOCUS: AT3G53610 |PROD: Ras-related GTP-binding protein, putative |complement(19887219..19889480) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +238 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.19 C - 0.27 1 agaataaact aaacatttag tggacaccaa atcataaatt tagcacacaa 51 aaataaaact agcccaaggc ccatggttcg aaatttatca aaccgtaacc 101 gaagaccacg cgccggacca acacagatct ccacgaacaa gatccaacgg 151 tccagatcca ttccctctcc ttctccctct tctctctaac caaaaaaaaa 201 AAAAAAACTT CTGAATCTCC GAAAAAAGCC AATCGGGGGA AGAAAAAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.003 +strand -54 : -47 ACGGTCCA AC RSP00211 Mean Expected Number 0.009 -strand -181 : -191 CTAAaTGTTTA AC RSP00653 Mean Expected Number 0.001 +strand -40 : -30 TTCcCTCTCCT Totally 3 motifs of 3 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: inorganic pyrophosphatase |LOCUS: AT3G53620 |PROD: the same as GENE |19891482..19894648 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +987 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.30 C - 0.27 1 tctcaactct ctccagcata ttccccaaat taacagtagc taacggagac 51 ttaacgtgga ctcctcgcaa tccgagtcac tttaacgtgt atcagacagc 101 caaaccttac gttgacccca ccgccgttag gaattccgtc tatgtctctt 151 tttccatcat ccaataaaat cttgccacat tgacactttc gggtccggac 201 ATATTCCAAA ATTAAAGAGA ATTTAATTTA TTGTTTTCCT TCCAGAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01640 Mean Expected Number 0.007 +strand -61 : -52 CTATGTCTCT AC RSP01678 Mean Expected Number 0.003 +strand -39 : -28 CAATAAAATcTT AC RSP01734 Mean Expected Number 0.005 -strand -141 : -147 TCCACGT AC RSP01776 Mean Expected Number 0.005 +strand +8 : +18 AaAATTAAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G53690 |PROD: the same as GENE |complement(19909794..19911043) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.21 T - 0.28 C - 0.15 1 aacaaaatgg gtttaaggat tacaattttt tgctaaccga ccggttcgtt 51 cgtgaaccgg acaattatta aaaattcgat ttaggttttt tagcagtaag 101 ccaaaaagtg agacgctttg gaaaatggaa agtgatTCAA Tgcaaaagag 151 caaaaagtag taagtgattc ataaacccta attctgattg tggacgaaac 201 CTAATTAGAA TCATTTTTGA AATGGCGACA CAGTCAGTTA ACGCAGTGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.007 +strand -140 : -129 AcAATTATTAAA AC RSP00279 Mean Expected Number 0.001 -strand -20 : -28 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -28 : -20 AAACCCTAA AC RSP00778 Mean Expected Number 0.005 +strand -68 : -59 TGATTCAATG AC RSP00953 Mean Expected Number 0.004 +strand -139 : -131 CAATTATTA AC RSP00961 Mean Expected Number 0.008 +strand -60 : -53 TGCAAAAG AC RSP01303 Mean Expected Number 0.003 +strand -29 : -20 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -29 : -20 TaAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: histone H4 |LOCUS: AT3G53730 |PROD: the same as GENE |complement(19923472..19924011) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.27 C - 0.24 1 ggcataatga cgcggatagc aaacagatcc aacggtccaa aatcattaaa 51 ttataaacac gcggatagat gataacgacc gtcgataaac tcagatccaa 101 cgacacacaa cttcctaaag ttttgtaaaa aacacaagca ctcctcctct 151 tctcgtcgtc tcatcctata taacaaactc aattttcatt tcaatcaatc 201 AAAACCATTC GGCAAAATCA AATAATCTTT TTCTTAGTTC GAATTTAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.002 +strand -169 : -162 ACGGTCCA AC RSP00192 Mean Expected Number 0.005 +strand -30 : -19 TAACAAACTCaA AC RSP00523 Mean Expected Number 0.006 +strand -144 : -138 ACACGCG AC RSP01733 Mean Expected Number 0.008 -strand -137 : -142 CCGCGT AC RSP01733 Mean Expected Number 0.008 -strand -186 : -191 CCGCGT Totally 5 motifs of 4 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ACT3 |LOCUS: AT3G53750 |PROD: actin 3 (ACT3) |19926266..19928599 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +636 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.18 1 gtcagttttg acaaagtaaa tacaaggcta tagctgcttt gctaacgtga 51 ttaattattt accatttacc aaaagcctta accgaggccg agcgagaaaa 101 aaaaacaaaa aaaaggtaga gggcaagaac gtcatttcca caaggaATTG 151 Aatcggaaaa cgaggtgtgc cgaattcgaa gcctttggac ccgtttttat 201 ACTTTTTTAC TTGCCATTCG TTTTTTTTTG TTCATTGGCC TCATTTGATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 -strand +7 : -5 AAAAAGTAtAAA AC RSP00447 Mean Expected Number 0.005 -strand -158 : -167 AGCAAAGCAg AC RSP00681 Mean Expected Number 0.004 -strand -144 : -152 TAATTAATC AC RSP00709 Mean Expected Number 0.007 +strand -149 : -141 TAATTATTT AC RSP00933 Mean Expected Number 0.002 +strand -5 : +8 TTTATAcTTTTTT AC RSP01654 Mean Expected Number 0.006 -strand -65 : -74 AATGACGTTC Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: armadillo/beta-catenin repeat family protein |LOCUS: AT3G53800 |PROD: the same as GENE |19941839..19943868 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.35 C - 0.24 1 agtctattca aatctgtatt tgggccatat cttattaaat gggtttagta 51 tatgccgtcg atttaatcta gcgtggtccc acactcgttc tccttaacgg 101 cttaaccgat aaactggcta gtgcaacttg gccacgtgtt ttttggtcta 151 tccatacttt acggggcaca caaaaatatc tcctctgttc ctgtaataaa 201 AAACAAACTA ACATTCTCAT TCCTCTCTCG ATCTTACTCA ATTTTGCGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -62 : -70 ACACGTGGC AC RSP00153 Mean Expected Number 0.001 -strand -62 : -71 aCACGTGGCC AC RSP00175 Mean Expected Number 0.001 -strand -63 : -70 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -61 : -70 aACACGTGGC AC RSP00306 Mean Expected Number 0.000 -strand -118 : -129 TGTGGGACCAcG AC RSP00819 Mean Expected Number 0.004 +strand -70 : -61 GCCACGTgTT AC RSP00837 Mean Expected Number 0.007 -strand -137 : -146 AaATCGACGG AC RSP00863 Mean Expected Number 0.004 -strand +28 : +20 AGAGAGGAA AC RSP00895 Mean Expected Number 0.001 +strand -128 : -121 GTGGTCCC AC RSP01034 Mean Expected Number 0.007 -strand -64 : -70 ACGTGGC AC RSP01255 Mean Expected Number 0.002 -strand -62 : -69 ACACGTGG Totally 11 motifs of 11 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 293. Group TF: PCF1; PCF2 /AC: RSP00306//OS: Oryza sativa /GENE: PCNA/RE: IIb /TF: PCF1; PCF2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: uracil phosphoribosyltransferase |LOCUS: AT3G53900 |PROD: the same as GENE |complement(19967634..19970019) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.31 C - 0.18 1 aaagttacta cattagaaaa ctctctatgt aaattaataa attatttatt 51 aatttattcc ttaatttgta gatttctgtt tggaaagaaa ttgctaaaaa 101 ttaatataaa agcCCAATgg gccgtgtaat aagtagaccc aaagttattc 151 ggtacagtag tgacgaccgg ttaatcttcg cccgcgctat cgtcattgca 201 AAAATCTCGA ACCAGATTCG GACATCTCGT CGAAAATGGC GTGCTCAATT 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G54000 |PROD: the same as GENE |20007585..20009601 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.14 T - 0.37 C - 0.29 1 cccacaaagt cacttgccat taccctctct gtattagtta gtcgtagtag 51 tctagtagta gttggtagcg cgtcaacttc actttctaac tgtaagcgcg 101 tgaagaacga aaccttttcc ccaccaccac caccaccacc tctctatact 151 acttcttctt cttcttcttc cttctacaaa tacatgacag tctctttccc 201 TCGTCTTCTA GTATTTTTTT GTTTTCTGTT ATTTTTCGCC TGAGACTGGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00999 Mean Expected Number 0.006 +strand -122 : -112 TCACTtTCTAA Totally 1 motifs of 1 different REs have been found Description of REs found 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CDC2B |LOCUS: AT3G54180 |PROD: cell division control protein 2 homolog B (CDC2B) |20070774..20072416 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.26 C - 0.21 1 caaatcatct gagtagatat cagattagac caaaataagt gagtccaatt 51 agttttcccc aaaaacattc acagaggtca cgactttagg ttaatctgtt 101 gcagttgtca cgaacgaatt caaaatccaa aggagcggga aaaacgaagt 151 gacgtggaag tatcttagcg aaagcatctc tctctctctc tctcacaatc 201 CATCATCTTC ATTAATCTGA TCAAATAATA GGGTTAATCA AAAGTCCAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.002 -strand -59 : -66 TTTCCCGC AC RSP00057 Mean Expected Number 0.003 -strand -43 : -52 TCCACGTCaC AC RSP00214 Mean Expected Number 0.001 +strand -51 : -44 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -44 : -51 CCACGTCA AC RSP00233 Mean Expected Number 0.005 -strand -43 : -52 TCcACGTCAC AC RSP00864 Mean Expected Number 0.001 -strand -8 : -16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -10 : -18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -12 : -20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -14 : -22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -16 : -24 AGAGAGAGA AC RSP00880 Mean Expected Number 0.002 -strand -94 : -103 CAACtGCAAC AC RSP01032 Mean Expected Number 0.001 +strand -171 : -162 CCAAAATAAG AC RSP01275 Mean Expected Number 0.003 -strand -43 : -52 TCCACGTCAc AC RSP01283 Mean Expected Number 0.000 -strand -7 : -23 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -9 : -25 GAGAGAGAGAGAGAGAt AC RSP01734 Mean Expected Number 0.009 -strand -43 : -49 TCCACGT Totally 16 motifs of 11 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein, hin1 protein, Nicotiana tabacum |LOCUS: AT3G54200 |PROD: the same as GENE |20076643..20077538 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.29 C - 0.16 1 agtatctcat caaattcttc ccaatttatg aaaatgtaat tttcatcaat 51 taactatttt tttaaaaaat atactcgtgg aaaatcaaga aatattaaaa 101 tgtaaaataa caaattatta aaatgaaatg tgtttgagtc atgtaattaa 151 aaactggtaa cgaatccgcg tacaaatagt ggtctcctcc tttataggat 201 AAACCAAAAC CCCTGAGAAA CTCAACAGCG AGAGAACCAC AAAGCGTAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.010 +strand -66 : -60 TGAGTCA AC RSP00253 Mean Expected Number 0.001 +strand -38 : -31 AATCCGCG AC RSP01733 Mean Expected Number 0.005 +strand -35 : -30 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ribosomal protein L17 family protein |LOCUS: AT3G54210 |PROD: the same as GENE |complement(20078525..20079413) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.27 C - 0.23 1 aatgcactta aacaatatct agcaatagca tacattataa aataattcta 51 acattacata gcccaaatgc aaatatctgt ttggcaacaa aaaccttaaa 101 aagtctcttg ttggcaaagc gctacagagt tacagtttat aggcccatta 151 aggcccatca aaaggtttct gataaacaaa gtcctcttcc tctatccctt 201 ATCCATTCAA CACCAGCAAA ATCCGCTTTG TTGCAGAGGA TCACAATCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00850 Mean Expected Number 0.009 -strand -86 : -91 GCCAAC AC RSP00999 Mean Expected Number 0.009 +strand +41 : +51 TCACaATCTAA Totally 2 motifs of 2 different REs have been found Description of REs found 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: mevalonate diphosphate decarboxylase, putative |LOCUS: AT3G54250 |PROD: the same as GENE |complement(20093286..20095710) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.42 C - 0.15 1 tgttttggtt atttcttacc taactcaatt tttttcctaa aacgttttag 51 gttaagtttt ggtgttttca tcaaaatggc aataaccatt tgattagagt 101 tttacagtta gtgaagttcT CAATttttga ataaaataat atttttaaaa 151 ttgtaaaggc aatgagtcat cattattctg tcgtattctc cgtcgctttc 201 ATTTTCAACT ACTTTGAAGC TGCAGATCTC TTTTGGAGAT TCACATGGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00664 Mean Expected Number 0.001 +strand -39 : -31 ATGAGTCAT AC RSP00838 Mean Expected Number 0.008 +strand -11 : -6 CCGTCG AC RSP01008 Mean Expected Number 0.007 +strand -183 : -177 ACCTAAC AC RSP01278 Mean Expected Number 0.003 +strand -39 : -31 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 -strand -31 : -39 ATGACTCAT Totally 5 motifs of 4 different REs have been found Description of REs found 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AP3 |LOCUS: AT3G54340 |PROD: floral homeotic protein APETALA3 (AP3) |complement(20130152..20132101) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.36 C - 0.22 1 cttgtaatta aaaaaatcag tttacataaa tggaaaattt atcacttagt 51 tttcatcaac ttctgaactt acctttcatg gattaggcaa tactttccat 101 ttttagtaac tcaagtggac cctttacttc ttcaactcca tctctctctt 151 tctatttcac ttctttcttc tcattatatc tcttgtcctc tccaccaaat 201 CTCTTCAACA AAAAGATTAA ACAAAGAGAG AAGAATATGG CGAGAGGGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -180 : -165 TTTaCATAAATGGAAA AC RSP00080 Mean Expected Number 0.004 +strand -107 : -92 TTTCCATTTTTaGTAA AC RSP00080 Mean Expected Number 0.004 -strand -92 : -107 TTACtAAAAATGGAAA AC RSP00080 Mean Expected Number 0.004 -strand -165 : -180 TTTCCATTTATGtAAA AC RSP00085 Mean Expected Number 0.005 +strand -180 : -165 TTTaCATAAATGGAAA AC RSP00085 Mean Expected Number 0.005 +strand -107 : -92 TTTCCATTTTTAGTAA AC RSP00085 Mean Expected Number 0.005 -strand -92 : -107 TTACTAAAAATGGAAA AC RSP00085 Mean Expected Number 0.005 -strand -165 : -180 TTTCCATTTATGtAAA AC RSP00136 Mean Expected Number 0.000 +strand -181 : -164 GTTTACATAAATGGAAAA AC RSP00137 Mean Expected Number 0.000 +strand -133 : -116 CTTACCTTTCATGGATTA AC RSP00445 Mean Expected Number 0.006 +strand +20 : +29 AAcAAAGAGA AC RSP00522 Mean Expected Number 0.003 -strand -83 : -89 CCACTTG AC RSP00861 Mean Expected Number 0.005 -strand -48 : -56 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -52 : -60 AGAGAGAGA Totally 14 motifs of 8 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 132. Group TF: AP3/PI /AC: RSP00136//OS: Arabidopsis thaliana /GENE: AP3/RE: CArG1 /TF: AP3/PI 133. Group TF: AP3/PI /AC: RSP00137//OS: Arabidopsis thaliana /GENE: AP3/RE: CArG2 /TF: AP3/PI 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein, DNA-binding Mel-18 protein |LOCUS: AT3G54360 |PROD: the same as GENE |complement(20139283..20142832) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +273 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.15 T - 0.23 C - 0.18 1 atattaaaaa tccaaccagt ttataatcca gaacaacggt tttcttaaat 51 tgactagtga cccaaattct taaataggct acaaaaaccg caggcccatt 101 tagtaatatc tatttttcgt ttgactgaga gaaaacaaaa caccatccaa 151 ttccaacgca caaaaaaaaa aaaaaaaaaa cttatcggaa acagaaaaaa 201 GAAGAGAGAG AGCTATCAAT CGATCATTGA TTGATTGCAG AGAAGCAGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00378 Mean Expected Number 0.008 +strand -81 : -75 TTTGACT AC RSP00864 Mean Expected Number 0.002 +strand +3 : +11 AGAGAGAGA AC RSP01205 Mean Expected Number 0.009 -strand -123 : -132 CCTATTTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 363. Group TF: WRKY1 /AC: RSP00378//OS: Petroselinum crispum /GENE: WRKY1/RE: WB /TF: WRKY1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SAC3/GANP family protein |LOCUS: AT3G54380 |PROD: the same as GENE |complement(20144872..20147769) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.24 T - 0.34 C - 0.18 1 acttgagttg aattttgaat gctgcatttg tagaaatgca aatttgtgta 51 caagtcagaa ccggtgtaaa ttaaattgac ccggttgccg ccagatttaa 101 ttcgctgaga gtactgtacc ggatttggtt ctcttccggt ttattccaaa 151 taatagttcg gtaacagctt tgattggttc gtttcttcag agtctggttt 201 GGGACTTGGG AGGGAAGAAG ATCTCGTTCC CTCTAAGCCA TGAATCGTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00024 Mean Expected Number 0.006 -strand -46 : -53 TATTATTT Totally 1 motifs of 1 different REs have been found Description of REs found 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G54390 |PROD: the same as GENE |complement(20148719..20150120) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +279 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.35 C - 0.16 1 gacaaataaa agaaaagaaa ccctattttt caatggtaac ccactttctc 51 acatttttct ctttattctc ctctatagta tgtgtgtgtg acgggttgct 101 ccactaactt ttgtgaaggt aagtataaag ccggtGCAAT tatgcgtttc 151 tctgtttgta tttgtaatct ttatacaaac cataaattgg aacaaagact 201 AAAATGACAG TAACAATATA AGTGAAAAAC ATAATTTCAT TAGCTTTAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01068 Mean Expected Number 0.009 +strand -114 : -106 TGTGACGGG AC RSP01598 Mean Expected Number 0.009 -strand +9 : +2 TGTCATTT AC RSP01601 Mean Expected Number 0.009 -strand +27 : +20 TTTCACTT AC RSP01687 Mean Expected Number 0.006 -strand -68 : -74 CGGCTTT Totally 4 motifs of 4 different REs have been found Description of REs found 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SKIP5 |LOCUS: AT3G54480 |PROD: SKP1 interacting partner 5 (SKIP5) |complement(20181663..20184394) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.34 C - 0.19 1 gtttgttttg tcacaagaga gagtgttgtt tgtgcttgag acttctcggc 51 tggcccctta ctaaaataca tctggactgt ccattgcatt aatcaaccaa 101 cggttacgat tcctctcttt tttatTCAAT tttactttta agaaaactcc 151 aaaaaagcat aaccataatg tcataaagac atgtttttgt tggaccggac 201 ATAACCAATG TCGAGATGAC GTCAATGGAT AGTTGAGTCG GCTGTTATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00235 Mean Expected Number 0.001 -strand -109 : -120 TTAATgCAATGG AC RSP00405 Mean Expected Number 0.004 -strand -48 : -55 TTTGGAGT AC RSP00445 Mean Expected Number 0.001 -strand -78 : -87 AAAAAAGAGA AC RSP00548 Mean Expected Number 0.002 -strand -94 : -104 GTAACCgTTGG AC RSP00863 Mean Expected Number 0.001 -strand -83 : -91 AGAGAGGAA AC RSP01654 Mean Expected Number 0.007 +strand +15 : +24 GATGACGTCA AC RSP01731 Mean Expected Number 0.000 +strand +15 : +26 GATGACGTCAaT Totally 7 motifs of 7 different REs have been found Description of REs found 228. Group TF: LFU; WUS /AC: RSP00235//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS1 /TF: LFU; WUS 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1539. Group TF: STF1/HY5 /AC: RSP01731//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: CRE (A/T) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATGCN4 |LOCUS: AT3G54540 |PROD: ABC transporter family protein |20200785..20203770 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +586 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.37 C - 0.16 1 ttgattttga attaattaac agaattatga tatatgtcaa gaataaatga 51 tgttaactat tttcataagt tgaatgcttt acttcaattt ggaaattaga 101 gaaaaggccc aaatatttca gctgtaataa gcccataatg aggcCCAATa 151 agacactaga aaggagttga gtaataacta agcgattctc ttctctccgt 201 CTGCTTCAAT CCCCTTTTTT TTTTCGTTTC GTCGTTTGTT CGTTTTCTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.008 -strand -94 : -100 CCTTTTC AC RSP00355 Mean Expected Number 0.006 +strand -184 : -177 TAACAGAA AC RSP00572 Mean Expected Number 0.009 +strand -169 : -162 ATATGTCA AC RSP00713 Mean Expected Number 0.007 -strand -77 : -83 CAGCTGA AC RSP01444 Mean Expected Number 0.000 +strand -13 : +2 CTCTtCTCTCCGTCT Totally 5 motifs of 5 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 1317. Group RE: RPS-1 /AC: RSP01444//OS: Oryza sativa /GENE: RPBF (OsDof3)/RE: RPS-1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: histone H2A.F/Z, identical to GI:2407800 |LOCUS: AT3G54560 |PROD: the same as GENE |20207248..20208628 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +262 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.33 C - 0.20 1 gttacaaaag aaaaaaaaaa gctgatttta aacgtttcta agaaatagag 51 ggcttaatgg caaaatgttg aaacatttta aggctccaaa gcgaaaaatt 101 taaccgccaa agcgtaggtt tccccccaag attttgaaaa tatttaaaaa 151 ctcccaccaa actttttaat tttaaaactc taatcccatt ctattcaacc 201 AGATTTCGTT TCTTTCGTCC TTTTTTTCCT TTTGCATTCT CTCGTCGTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.010 +strand -50 : -44 CTCCCAC AC RSP00961 Mean Expected Number 0.005 -strand +36 : +29 TGCAAAAG AC RSP01634 Mean Expected Number 0.001 +strand -117 : -107 CTcCAAAGCGA Totally 3 motifs of 3 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1454. Group RE: TERE /AC: RSP01634//OS: Arabidopsis thaliana /GENE: At3g62160/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G54690 |PROD: the same as GENE |20257517..20259002 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.28 C - 0.25 1 aaaaatgatg ctaacatact tgtttgattt tcatctaaac aaattgcaaa 51 gcagttttca taagcatcac gctaataata ccattgatgc aattaatgac 101 caccgatcgc tgaatcaccg cgaaaacgaa ataacccgtt aaattaccca 151 tttgcccctc cgtctccatt aatacacact ctctgctttt tttgagatct 201 CTCTCAGCAC AAAGCAATCA CAAATCAAAG CTTTCAGAGA TCCAAAAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.006 -strand +51 : +42 CCATTTTTGG AC RSP01326 Mean Expected Number 0.010 -strand -4 : -10 TCTCAAA Totally 2 motifs of 2 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1089. Group TF: ABF-2 /AC: RSP01326//OS: Pisum sativum /GENE: AB80/RE: AB1 heptamer /TF: ABF-2 ||Identical REs AC: RSP01326 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT3G54770 |PROD: the same as GENE |complement(20284700..20286876) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.39 C - 0.20 1 aaaaaattgt ggtgatgtta ttataagttt ttcatttgcg ggattggtag 51 tcgcgatcgt atcaagagaa aatgcataag agaaatgaat agagacatat 101 tgaagggtgt agtgatcacg ttaagactta cctgtccaCC AATctgtcac 151 tctttatttt acacaacttc tttattatta ttctctctca ctttttatat 201 ATAATTCAAT TCGCTCTCCT TCTCTCTCTA TCTCTGCCCT TTCTTTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.002 -strand -152 : -161 tACCAATCCC AC RSP00653 Mean Expected Number 0.007 +strand +10 : +20 TTCgCTCTCCT AC RSP00864 Mean Expected Number 0.003 -strand +29 : +21 AGAGAGAGA AC RSP01023 Mean Expected Number 0.002 +strand -89 : -82 GTGATCAC AC RSP01023 Mean Expected Number 0.002 -strand -82 : -89 GTGATCAC AC RSP01640 Mean Expected Number 0.002 -strand -101 : -110 aTATGTCTCT Totally 6 motifs of 5 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 948. Group RE: PI /AC: RSP01023//OS: Arabidopsis thaliana /GENE: GapB/RE: PI /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G54970 |PROD: the same as GENE |complement(20379150..20381066) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.27 C - 0.19 1 tcgaggttct tctctcaact atcttcagca gagaaaagat gatcggagaa 51 ataaataaaa gagacaactt gaaatcccga agatacacca aaaaaaaaaa 101 aaaagaagct taaaccctaa ttatgtctat taaacggcgt cgttttgggg 151 attattcctt tttaaaaacg ttctcttttc ccgttttatc taatttcctc 201 AAGGAAGAGA GAAGCAAAAA TGTCGAATTG CAGATTTCTC TACCACAACG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -56 : -69 AAACGACgCCGTTT AC RSP00279 Mean Expected Number 0.003 -strand -81 : -89 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -89 : -81 AAACCCTAA AC RSP01303 Mean Expected Number 0.006 +strand -90 : -81 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -90 : -81 TaAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: TON1A |LOCUS: AT3G55000 |PROD: tonneau family protein |20392485..20394764 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.32 C - 0.18 1 catctcaaaa tgtgaacttg acatcatatt ctcgttcaaa aaaggaagat 51 aagacaaaac atttaagaaa catttcacaa tcataggggg caaaagatca 101 aaatttaaaa tttcggacga gagtggaaac taTCAATctt taaggggatg 151 atttggcaaa agtgttgttt ttatttttct tttactgttt tcgttttatc 201 ATCTTTCAAC GTCTTTCTCT CCCGACGGCC AAAAACCCCA ATTTTGCCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 +strand -155 : -147 AAGATAAGA AC RSP00914 Mean Expected Number 0.003 +strand -54 : -45 GATGATTTGG AC RSP00915 Mean Expected Number 0.002 +strand -54 : -45 GATGATTTGG AC RSP00943 Mean Expected Number 0.006 +strand -131 : -121 aCATTTCACAA AC RSP01105 Mean Expected Number 0.008 -strand -111 : -116 CCCCCT AC RSP01596 Mean Expected Number 0.006 -strand -121 : -131 TTGTGAAATGt AC RSP01621 Mean Expected Number 0.010 -strand -35 : -44 aACACTTTTG Totally 7 motifs of 7 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1023. Group RE: C-rich motif /AC: RSP01105//OS: Spinacia oleracea /GENE: rps22/RE: C-rich motif /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: TT5 |LOCUS: AT3G55120 |PROD: |complement(20441091..20442447) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.25 C - 0.27 1 ttgaaattat cctaactatg tgctctgcat atttaagggc tcaaagcttc 51 aaccaccaat tgtcaatgca tctcccaatc aaaatataaa aaaagagacg 101 aaaacgaaag tacacgtgct tacacatcca acactcgtaa tcgtaactat 151 tgctacctac ccttctctct tctacttaac cccaaaggcc ccaaaaacac 201 AATCAAGAAA AGCTCTGTAA CATTATTATC AATCGAAATT CCAACCGACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand -112 : -103 AAAAAAGAGA AC RSP00524 Mean Expected Number 0.007 +strand -89 : -83 ACACGTG AC RSP00653 Mean Expected Number 0.003 +strand -38 : -28 TTCTCTCTtCT AC RSP00817 Mean Expected Number 0.003 +strand -90 : -81 TACACGTGCT AC RSP00818 Mean Expected Number 0.000 +strand -97 : -73 ACGAAAGTACACGTGCTTACACATC AC RSP00824 Mean Expected Number 0.002 +strand -49 : -39 GCTACCTACCC AC RSP00825 Mean Expected Number 0.000 +strand -56 : -32 AACTATTGCTACCTACCCTTCTCTC AC RSP00826 Mean Expected Number 0.002 +strand -49 : -39 GCTACCTACCc AC RSP00974 Mean Expected Number 0.002 +strand -90 : -81 TACACGTGCt AC RSP01472 Mean Expected Number 0.006 +strand -49 : -39 gCTACCTACCC Totally 10 motifs of 10 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 764. Group TF: ACE-binding TF /AC: RSP00818//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE (AtCFI) /TF: ACE-binding TF 770. Group TF: R2R3-type MYB /AC: RSP00824//OS: Arabidopsis thaliana /GENE: CFI/RE: MRE-core (AtCFI) /TF: R2R3-type MYB 771. Group TF: R2R3-type MYB /AC: RSP00825//OS: Arabidopsis thaliana /GENE: CFI/RE: MRE (AtCFI) /TF: R2R3-type MYB 772. Group TF: R2R3-type MYB /AC: RSP00826//OS: Arabidopsis thaliana /GENE: F3H/RE: MRE-core (AtF3H) /TF: R2R3-type MYB 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1341. Group RE: Box-I /AC: RSP01472//OS: Pisum sativum /GENE: PsCHS1/RE: Box-I /TF: unknown ||Identical REs AC: RSP01528 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L23A (RPL23aB) |LOCUS: AT3G55280 |PROD: the same as GENE |20511312..20512686 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +332 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.18 1 tttagtgatt ttttgggtac aaaattgagc aatgtctagt gacgttttta 51 ctcaaactca taaaccaaca ttctaatcag aatcacgatt tggactttgg 101 tttgggacct tctttctaca ccaactgggc ttgtaatcag ttggtagaga 151 aagcccaatt atatattatt taaggcccaa aataaatcga tctagggttt 201 ACGGTTTTGT TTCATTTTCA CTTCCCTTAG AATAAATAAA AACCACCAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.002 +strand +11 : +22 tTCATTTTCACT AC RSP00535 Mean Expected Number 0.001 -strand -25 : -41 GCCT-- +7 bp --TATATA AC RSP01654 Mean Expected Number 0.006 +strand -163 : -154 AGTGACGTTT Totally 3 motifs of 3 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: photosystem II reaction center PsbP family protein |LOCUS: AT3G55330 |PROD: the same as GENE |complement(20524870..20526328) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.36 C - 0.14 1 tgtaacaaag agccccaaaa tgtttaactg ttcatcctaa tttgtatatt 51 tatgtaaaac acccattgaa actgtgcgtt ttggttacat ttttgttatc 101 ttgcaaagat ttattatttt gaagggccat ttttgcaaat tagtgttttt 151 tttgtctctc tgacattttt aaaaggtcag gaagtttcaa aagtggataa 201 ACTGAGAAAG AAGTGAATCC ATAAGAGAAG ACAACAAAAG ATCTATCTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.003 -strand -118 : -125 CAAAACGC AC RSP01463 Mean Expected Number 0.007 +strand -161 : -149 ATTTgTATATTTA AC RSP01475 Mean Expected Number 0.001 +strand -186 : -178 CCAAAATGT AC RSP01641 Mean Expected Number 0.005 +strand -51 : -42 TTTTGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G55350 |PROD: the same as GENE |20529450..20531792 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 aacctagata attaaagttg gtccaaagga tctttaattt cgaaaacctt 51 cttttgcaat taatcatcaa aacaagtggc aaaaaaaaag aagcaatggc 101 cacgtttttt ttttttttga aagtcgaaat caaatcacat taccccaaat 151 ctctcttctt tgaactttaa tcctcttctc tattgcatgc tttaagctcc 201 AAACCCAAAA CGCAGGAAAA TCTCTTTGAC AGTTTTTGGT TTTAGATGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 -strand -121 : -130 GCCACTTGTt AC RSP00522 Mean Expected Number 0.004 -strand -122 : -128 CCACTTG AC RSP00734 Mean Expected Number 0.003 +strand +6 : +13 CAAAACGC AC RSP00819 Mean Expected Number 0.002 +strand -102 : -93 GCCACGTtTT AC RSP00961 Mean Expected Number 0.005 -strand -143 : -150 TGCAAAAG AC RSP01034 Mean Expected Number 0.004 -strand -96 : -102 ACGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CER10/ECR |LOCUS: AT3G55360 |PROD: |complement(20531907..20533963) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.28 C - 0.20 1 ttcataaacc gaaaaaacaa aaatctaaac ctaaactgag taattactaa 51 tggtggatcc ttaaaacaaa gccataattt gcaattgcaa caaatgtttt 101 tgtttggagt aaaaaccaaa aaaaaaatga tggggagcaa ctaaaaatgt 151 aaaatggtcc caatctaatc gcataagttg ggaagatagt tagtagttct 201 CCTACTCCCA ACTACATCCT CTTCAATGCT CAATCTCGTC TTCTTCTTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.002 +strand -98 : -91 TTTGGAGT AC RSP00751 Mean Expected Number 0.004 +strand -195 : -184 AAACCGAaAAAA Totally 2 motifs of 2 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ubiquitin-conjugating enzyme 14 (UBC14) |LOCUS: AT3G55380 |PROD: the same as GENE |20542396..20544150 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.35 C - 0.19 1 gaaattgtac atctctctct ctctaactgg tatattggat attttcctct 51 aattcattat ttccattgac aagatttttc ccttaatatg aacaaacata 101 ttccatttta gctttaaatc acaaaaaaaa gagataaatt tctcaaaaga 151 aattataagt agacaccgcc ctttttataa acaaccctaa aagtagtaaa 201 AATAATATCG AGACGAGACG GGTTTGTTTC TTCTCTCTAT CTCTATATCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand -76 : -67 AAAAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -177 : -185 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -179 : -187 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -181 : -189 AGAGAGAGA AC RSP01017 Mean Expected Number 0.009 -strand +31 : +24 AGAAACAA Totally 5 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: integral membrane family protein, MtN24 |LOCUS: AT3G55390 |PROD: the same as GENE |20545592..20546658 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +170 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.05 T - 0.34 C - 0.29 1 atgccgttaa aaaatcacaa tcacaagtat tcataaccta aaattcaaca 51 aagaaatcaa ttacgtattc ttcatttttc cacattaaac cagaatctta 101 aaccaaaCCA ATccaaaaaa gcgacattta aaccaatccg gttatcaaac 151 tatctctctc tcactcacac acctttctct tttcgcatca ctttccctct 201 CATTCTTCTT TCTTATCTCT CTCTCTCTCT TTCTCTGACT CTCTCCTTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.005 +strand -151 : -141 AaAGAAATCAA AC RSP00445 Mean Expected Number 0.002 +strand -86 : -77 AAAAAAGcGA AC RSP00864 Mean Expected Number 0.009 -strand +30 : +22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.009 -strand +28 : +20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.009 -strand +26 : +18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.009 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.009 -strand -40 : -48 AGAGAGAGA AC RSP01031 Mean Expected Number 0.004 +strand -109 : -102 AGAATCTT AC RSP01072 Mean Expected Number 0.005 +strand -141 : -132 ATTACGTaTT AC RSP01283 Mean Expected Number 0.000 -strand +29 : +13 GAGAGAGAGAGAGAtAA Totally 10 motifs of 6 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G55430 |PROD: the same as GENE |complement(20560576..20563192) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.26 C - 0.22 1 atgagtattt accagccaaa aaccattaaa gaaaaagatg acaaattgat 51 tatccaaaca aaagcagact ctataattag ccaaattaat taactaaagt 101 ttccacggtc acaacaaaat ccacttttTC AATaatttac aacggcctaa 151 atttaagccg acgcacatga aaaacaaaga caacacaaac ttcttctttt 201 ATTTTGCTTT CCACAAAATC CAGCTGTTCC TCACTAAAAA TATACACACG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SCL30 |LOCUS: AT3G55460 |PROD: SC35-like splicing factor, 30 kD (SCL30) |20571801..20574709 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.33 C - 0.23 1 ctaaaactgt tttttcccca atttttttta ctgtttctct aattgtcaac 51 aatcaacaat ctttcccttt ttccatttaa aaaaacatac gcgaaaaagg 101 aaaaaacgcg ataaggccaa aagcccattt aataaatggg ccaagctctc 151 cgatcaatag aaaaagatct gtcttcttct tctctattct ctgatctctc 201 ATAAGAAGGG CTTAGGGTTC ACTTCAGATC TGTCTTTGAA CATTGCTACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 -strand -165 : -176 AAAcAGTAAAAA AC RSP01303 Mean Expected Number 0.001 -strand +21 : +12 TgAACCCTAA AC RSP01304 Mean Expected Number 0.001 -strand +21 : +12 TGAACCCTAA AC RSP01776 Mean Expected Number 0.009 -strand -155 : -165 ACAATTAgAGA Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G55510 |PROD: the same as GENE |20589963..20593382 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +248 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.15 T - 0.39 C - 0.22 1 gcaccatatt cactacaatt gtttattctc caaaaacaaa caatcttttt 51 gctgtaaaaa tgtttagatt tttgttaatt ttcctttttt tttgtttttg 101 gtttacagat tttgtttgta tagacaaggt cgggctgacc cggatattcg 151 gatccgtatt gtcgtattga caccgtgaac ccaaccaacc aaaaccctaa 201 ACCCTTTTTT GACTTGTCTC TACTTGTTAC TTCACCGCCG CGTTCTCAGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.002 +strand +36 : +42 CGCCGCG AC RSP00279 Mean Expected Number 0.001 -strand -1 : -9 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -9 : -1 AAACCCTAA AC RSP00566 Mean Expected Number 0.005 -strand -72 : -81 CCTTGTcTAT AC RSP00628 Mean Expected Number 0.006 +strand -162 : -155 AACAATCT AC RSP00870 Mean Expected Number 0.006 +strand -148 : -139 TGTAAAAaTG AC RSP00888 Mean Expected Number 0.007 -strand -128 : -136 AAAAATCTA AC RSP01303 Mean Expected Number 0.003 +strand -10 : -1 aAAACCCTAA AC RSP01454 Mean Expected Number 0.009 +strand -17 : -11 ACCAACC Totally 9 motifs of 9 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: immunophilin |LOCUS: AT3G55520 |PROD: the same as GENE |20604691..20606324 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +465 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.23 C - 0.18 1 aacgagcagc atattggcca atagaaatat aatgggccta atgggctaac 51 ttctgttgtt gctcttcagt taaatagata agacctcttg aaaacatgat 101 gggcctaatg ggctacaaat atgaatttta gcaccggtcc ctagagaaca 151 ataacacgtg acgtcaaaag catcggatta gagaaagaag aagaagaaga 201 AGAAGCCGAT TCTAGGAAAA ATCCGATACT CTTTGGACAG TCTATGGCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00978 Mean Expected Number 0.004 -strand -39 : -48 gTCACGTGTT Totally 1 motifs of 1 different REs have been found Description of REs found 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-binding protein-related |LOCUS: AT3G55560 |PROD: the same as GENE |complement(20615595..20617359) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +544 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.26 C - 0.25 1 gctctggtcg agagagagag agaagagagg accgcttcag agaacttcaa 51 tcacgaaaga tcaaatcaca acccccttat cgtacgcctc ttttccttca 101 gtccttttta acgtacgcat gctcTCAATa ttttccaaag tacaatatag 151 aaagagacgg taataataaa aagacttcat gactttcaaa gtacaaaatc 201 CTCCTCCCCT GCCAAAAAAA AAAAACCCTG TTGGGTCTAT CTTTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.008 +strand -38 : -30 ATAATAAAA AC RSP00861 Mean Expected Number 0.001 +strand -52 : -44 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -190 : -182 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -188 : -180 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -186 : -178 AGAGAGAGA AC RSP01600 Mean Expected Number 0.006 +strand -17 : -10 TTTCAAAG Totally 6 motifs of 4 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G55605 |PROD: the same as GENE |20633599..20634981 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.35 C - 0.14 1 tcttttgact tttgtaaatt ctgagttttt gatatgtgaa actatacttc 51 taaaagatat gccagaaatc agtacaattt gtttgtgaag aggaattgag 101 aaatgaagaA TTGTaattta accggtttgg tttgaagacc ggtatgattt 151 ggttagtata gtttgtcttc ttcgtacact taaaagttaa aaccctaagg 201 AAAGGCCAAA ACCCAGAGAC TGAGAGAATC CATTTTCTTT TAATCGCCAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -3 : -11 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -11 : -3 AAACCCTAA AC RSP00943 Mean Expected Number 0.008 -strand -95 : -105 TCATTTCtCAA AC RSP01014 Mean Expected Number 0.010 +strand -101 : -92 gAAATGAAGA AC RSP01303 Mean Expected Number 0.002 +strand -12 : -3 aAAACCCTAA AC RSP01596 Mean Expected Number 0.008 +strand -105 : -95 TTGaGAAATGA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATDFD |LOCUS: AT3G55630 |PROD: |20647648..20650471 |SUPPORT | 15 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.36 C - 0.16 1 ctttctgagt aagtgataag aaaattctcc ttaatactac acacattttc 51 aattttcaat ttggggtcca cattaggttc aaattttagt ggagaagaaa 101 ccATTGGtga atggataacg gttttgttcg gtacaaatcc gaattctgca 151 attatatgtg tgtagataaa gttaacacct ttttcgttta gatagtttga 201 AGATTAAACT GAAAGTTAGG ACCTTTCATT TCCAATCTCT AAACCCATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.002 +strand -104 : -94 GaAACCATTGG AC RSP01643 Mean Expected Number 0.000 +strand -186 : -174 GAtAAGAAAATTC Totally 2 motifs of 2 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 1463. Group TF: WRAF1; WRAF2 /AC: RSP01643//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np6a-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: mitochondrial substrate carrier family protein |LOCUS: AT3G55640 |PROD: the same as GENE |20650818..20653638 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.24 T - 0.17 C - 0.16 1 aatggaaaag gaatctcacc agtcaccaga aaaagaaaca aggagaaaga 51 aataaaaaag aagaggtgaa tcacgtggcg gtaaaacgtt cgttgcatcc 101 aaaacgctgt cgtttttaaa gtgtttagtg ttgccgtgta ggtgtggcgt 151 tggaaccaag cgtatacaac aaagtcttga agcagagaaa gaaaaaagaa 201 AGACGAGAGG CACACAAAAA GAGATACAAA ACCAAAACTT TCAAGCAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -86 : -99 AAACGACAgCGTTT AC RSP00175 Mean Expected Number 0.001 +strand -129 : -122 CACGTGGC AC RSP00640 Mean Expected Number 0.001 +strand -130 : -123 TCACGTGG AC RSP00716 Mean Expected Number 0.006 +strand +27 : +35 CAAAACCAA AC RSP00734 Mean Expected Number 0.008 +strand -101 : -94 CAAAACGC AC RSP00966 Mean Expected Number 0.001 -strand -122 : -131 GcCACGTGAT AC RSP01012 Mean Expected Number 0.007 -strand -58 : -64 ACCTACA AC RSP01034 Mean Expected Number 0.006 +strand -128 : -122 ACGTGGC AC RSP01476 Mean Expected Number 0.004 +strand -86 : -79 TTTAAAGT AC RSP01699 Mean Expected Number 0.008 -strand -125 : -131 ACGTGAT Totally 10 motifs of 10 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L35a (RPL35aD) |LOCUS: AT3G55750 |PROD: the same as GENE |20709532..20711022 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.31 C - 0.16 1 taaagtgaaa ttaatcaagt agtcatattc ttaagcaaag ccatattcat 51 taagaaaata aataatcatt ttcttatgca gagccatatt tgggccaagc 101 cgtataaacg tttgggccaa cttgtttgag atagcatata agcCCAATag 151 agttttgttg ctgagcttat ttgtgaatcc atataaagtc ttgacctaat 201 AACGAAAGCT AGGGTTTTTT CTCTGTGAAA TCGCTCGCCG GCATAAAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.009 -strand -141 : -151 TATTTtCTTAA AC RSP00447 Mean Expected Number 0.007 +strand -167 : -158 AGCAAAGCcA AC RSP00879 Mean Expected Number 0.009 +strand +3 : +9 CGAAAGC AC RSP01757 Mean Expected Number 0.002 -strand -6 : -13 GTCAAGAC Totally 4 motifs of 4 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LIM domain-containing protein |LOCUS: AT3G55770 |PROD: the same as GENE |20714284..20716299 |SUPPORT | 7 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +494 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.32 C - 0.18 1 ttccaggagc ataaagttat atgaacagat aatctaaact ctttatttgg 51 taaagataag aagacaaata ttttctgtaa ccaataataa tcttcagtta 101 catttgtatt aaattctaat aaaaaaaata tacagaggac aagccaaagt 151 ggaaccccac ccactgtctt ctcaaagatt aaaaaaaaga aaaggatttt 201 ACCCAAAATC TCCGATATTC TTATTCCTTT GCTGTATCAT CTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 +strand -148 : -140 AAGATAAGA AC RSP00254 Mean Expected Number 0.008 -strand -6 : -12 CCTTTTC AC RSP00447 Mean Expected Number 0.003 -strand +33 : +24 AGCAAAGgAA AC RSP01209 Mean Expected Number 0.003 +strand -160 : -151 CTTTATTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: peptidyl-prolyl cis-trans isomerase |LOCUS: AT3G55920 |PROD: the same as GENE |complement(20754426..20756053) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.37 C - 0.13 1 tataatttat aaataatgat tcgttgacaa agttgcaagt agtctgctta 51 ttggttaacg tcgaaatgtt tgggtctaac atgaaaatta ttgttttata 101 agttttaagt tgaaagattt tgataatatg agggtacctt tctaaatttc 151 tgctactctg ttaaatcttt gatagtttct gcagattcat tgacccattt 201 CCCAAATTAC AAAGACGAAG GAGTAATGGC AATTACGGCG ACTAGATTGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.009 -strand -38 : -47 TAACAGAGTa Totally 1 motifs of 1 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: NLI interacting factor (NIF) family protein |LOCUS: AT3G55960 |PROD: the same as GENE |complement(20771436..20774012) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.19 G - 0.07 T - 0.42 C - 0.33 1 caagtggagc gcgtgaggat caaaattcat aaatgtcatt ctcaaaaaga 51 gacttcatcg aaccatcgcc accatagctt cttcctttct tcacaataac 101 acctctctct ctctctctct ctctctctct ctctctctct ctctctctct 151 ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct 201 AATTCATTTT AAATTACAAA TTTATTCATT TTTGATTGCT TTCTTTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.000 +strand -158 : -149 cAAAAAGAGA AC RSP00522 Mean Expected Number 0.000 -strand -194 : -200 CCACTTG AC RSP00702 Mean Expected Number 0.007 -strand -150 : -154 CTCTT AC RSP01283 Mean Expected Number 0.000 -strand -2 : -18 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -4 : -20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -6 : -22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -8 : -24 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -10 : -26 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -12 : -28 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -14 : -30 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -16 : -32 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -18 : -34 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -20 : -36 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -22 : -38 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -24 : -40 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -26 : -42 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -28 : -44 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -30 : -46 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -32 : -48 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -34 : -50 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -36 : -52 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -38 : -54 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -40 : -56 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -42 : -58 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -44 : -60 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -46 : -62 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -48 : -64 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -50 : -66 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -52 : -68 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -54 : -70 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -56 : -72 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -58 : -74 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -60 : -76 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -62 : -78 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -64 : -80 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -66 : -82 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -68 : -84 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -70 : -86 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -72 : -88 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -74 : -90 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -76 : -92 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -78 : -94 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -80 : -96 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -82 : -98 GAGAGAGAGAGAGAGAg AC RSP01559 Mean Expected Number 0.003 -strand -187 : -192 ACGCGC AC RSP01689 Mean Expected Number 0.007 -strand -149 : -153 TCTCT Totally 46 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 668. Group RE: CTCTT motif /AC: RSP00702//OS: Glycine max /GENE: lbc3/RE: CTCTT motif /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1507. Group RE: CARE G /AC: RSP01689//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE G /TF: unknown ||Identical REs AC: RSP01696 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: prenylated rab acceptor (PRA1) family protein |LOCUS: AT3G56110 |PROD: the same as GENE |complement(20832913..20833987) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.24 T - 0.22 C - 0.18 1 ccagaaagag aaaatgtgaa gaaatcggcg gaagaagaag aatgaaccac 51 ccagaccgtg gcgtcagtga agacgttagt cgtgctctct cggtatttta 101 gggtttgatt aaaaaaaaaa aaaatccaaa aacaaaaata aaacATTGTt 151 taaaagcacg aggaggaatc gaaccagcga cttgaggttt tgggccggtt 201 TAACCTTTAT GGTCAGGCTC AGGCCCTAGA ATATCTAATC TACACGGAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -103 : -95 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -95 : -103 AAACCCTAA AC RSP00421 Mean Expected Number 0.004 -strand -107 : -113 ACCGAGA AC RSP00565 Mean Expected Number 0.010 +strand -108 : -102 GTATTTT AC RSP00861 Mean Expected Number 0.008 +strand -198 : -190 AGAAAGAGA AC RSP01006 Mean Expected Number 0.006 +strand -155 : -149 ACCACCC AC RSP01103 Mean Expected Number 0.003 -strand -11 : -18 AAACCTCA AC RSP01303 Mean Expected Number 0.002 -strand -94 : -103 cAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 541. Group RE: AT-rich G /AC: RSP00565//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich G /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G56270 |PROD: the same as GENE |20880979..20883028 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +220 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.26 C - 0.24 1 tatcgcacgg gaaaattata acaattttcg gatattcgta tttgaacaga 51 aacaaacaac acatacgtaa gaatttcctt cacaaaaaag cccaatatag 101 acgaacttga acttcgtacc aacggcCCAA Tatcgcttcc ttaatcaacg 151 gcccaaaatt ttcatttatt aattaatcag ataaccaatc aatagaagcc 201 ACGTCGCCAC AGCCATTAGT AGTAGCATCA TCAAAGCCTG CATTCTTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -3 : +7 GCCACGTcGC AC RSP00073 Mean Expected Number 0.001 -strand +7 : -3 GCgACGTGGC AC RSP00103 Mean Expected Number 0.007 +strand -142 : -133 aCACATACGT AC RSP00153 Mean Expected Number 0.002 +strand -2 : +8 CCACGTcGCC AC RSP00681 Mean Expected Number 0.005 +strand -31 : -23 TAATTAATC AC RSP00986 Mean Expected Number 0.001 +strand -2 : +6 CCACGTCG AC RSP01034 Mean Expected Number 0.006 -strand +4 : -3 ACGTGGC Totally 7 motifs of 6 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G56360 |PROD: the same as GENE |20907460..20908572 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +160 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.29 C - 0.20 1 ttagtctata tcgtcaacac tttacaggga ataatcacct acttaagcca 51 cctcagactt ttgaggataa cgtgaagaat aagataaacg cgatttctac 101 catctctaaa tctcaaccgt ccgatcaaac aacttacaca acttccgtgc 151 tggagaaata aaaaaattag gtatttaata attcatcatt gccattggat 201 TGTGTGTGGC TGCGTCAGTA AAACGTATTC TTAAAAGCAA CCATTGGTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.003 -strand -16 : -27 tGAATTATTAAA AC RSP00132 Mean Expected Number 0.001 +strand -154 : -147 GCCACCTC AC RSP00248 Mean Expected Number 0.002 +strand -154 : -145 GCCACcTCAG AC RSP00495 Mean Expected Number 0.010 -strand -175 : -182 TGTAAAGT AC RSP00548 Mean Expected Number 0.002 +strand +37 : +47 GcAACCATTGG AC RSP00550 Mean Expected Number 0.002 +strand -5 : +6 TGGATTgTGTG AC RSP00869 Mean Expected Number 0.002 -strand -175 : -183 TGTAAAGTG AC RSP00918 Mean Expected Number 0.007 -strand -183 : -192 GTTGACGATA AC RSP01505 Mean Expected Number 0.000 -strand -75 : -83 GATCGGACG AC RSP01631 Mean Expected Number 0.001 +strand +30 : +40 CTTAAAAGCAA AC RSP01638 Mean Expected Number 0.002 +strand +30 : +40 CTTAAAAGCAA AC RSP01702 Mean Expected Number 0.008 +strand +20 : +29 AAaACGTATT Totally 12 motifs of 12 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: WRKY70 |LOCUS: AT3G56400 |PROD: WRKY family transcription factor |complement(20919907..20921456) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.07 T - 0.27 C - 0.27 1 ctcaccataa gcaaaagaaa tgggtggata agttcaagtt ccatctcatt 51 tcctcacaca tctctctttc ttccttctca tttcctcgca tcttcctcta 101 aaaaaaaaaa tcaaagaaac caacaaaata aaaagtgccc atcattacaa 151 atcttatttc caccttatat ttacacacac ttctcttctt tcctttaatc 201 ATACAAACCA CACCAAGAGG AAAGAAAAAT AAGATACCAC TCACCAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.001 -strand -171 : -177 TATCCAC AC RSP00144 Mean Expected Number 0.000 -strand -175 : -180 CACCCA AC RSP00187 Mean Expected Number 0.002 -strand -174 : -178 CCACC AC RSP00445 Mean Expected Number 0.010 -strand -129 : -138 AAgAAAGAGA AC RSP00654 Mean Expected Number 0.000 -strand -175 : -184 CACCCAtTTC AC RSP00861 Mean Expected Number 0.002 -strand -130 : -138 AGAAAGAGA Totally 6 motifs of 6 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G56680 |PROD: the same as GENE |21002259..21004646 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +257 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.32 C - 0.13 1 taccaagaca atcagcacgg acattgttta gagtctctgt tttgaaagaa 51 atgttttcaa aatgcttgtt tagaatataa gctctatata gtatacctac 101 acatgttatc gtgggtccaa atagaagaga aaaactatat ttaaaaaatt 151 aaaattatat gagatattta ttttcaatga aaaggagaaa aataaaaaat 201 AAAGAAGGAA AAAATATAAA GTTTCCTTTC CCTCTCGTTC GTTGGCTTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01167 Mean Expected Number 0.010 -strand -31 : -39 TAAATATCT AC RSP01458 Mean Expected Number 0.010 +strand -62 : -50 ATTTAAAAAaTTA AC RSP01469 Mean Expected Number 0.009 -strand -93 : -102 TaACATGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G56740 |PROD: the same as GENE |21026350..21029521 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +260 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.32 C - 0.16 1 tgcagctcac tggtcatata aaataattaa tgagttaggt caattttgtg 51 cacgatttag atggagacga agatagggaa aaaaataaca gtaggaaaat 101 ataggcccat ctattctcca ccgtaaataa agattaatta tttctctcat 151 tacttactac aaaacgcaat taatttgtgc tataagaaat cttctggact 201 ATTCTCTCTT GCCTATTGCA ACAATAATGA TATGTTTTAT GTTGCACAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.002 -strand -172 : -185 tAATTATTTTATAT AC RSP00681 Mean Expected Number 0.007 -strand -61 : -69 TAATTAATC AC RSP00734 Mean Expected Number 0.003 +strand -41 : -34 CAAAACGC Totally 3 motifs of 3 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CAM3 |LOCUS: AT3G56800 |PROD: calmodulin-2/3/5 (CAM3) |complement(21045656..21047053) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.27 C - 0.21 1 tcaacgctcc gcgtacagac cgcgtgaacg tgtgatccgt ttaattgtcc 51 actctggcgt tttataagag aaaagaaatc attgatgata gcattaacgc 101 aattacagtc ataatccgag gttataacag agatttttcc aaacccggta 151 cgggttaaaa aaaaaagctt ttaaagtccc gggtcggagc aaaagtcgtt 201 AATAGCTTCG TACCCGATAA ATACGGTTGC TCTCTCGTTT TTTCCAGCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.002 +strand -34 : -25 GCTTTTAAAG AC RSP00629 Mean Expected Number 0.007 -strand -63 : -70 AAAAATCT AC RSP01476 Mean Expected Number 0.008 +strand -31 : -24 TTTAAAGT Totally 3 motifs of 3 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: VQ motif-containing protein |LOCUS: AT3G56880 |PROD: the same as GENE |21070894..21071944 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.36 C - 0.27 1 ttaatacaga gattagatag agagtcaaga aaaatgggtt taataaataa 51 gacgaaaaaa acagagctga gtcagagttc cgtacaattc tgctgacgcg 101 tgtcttctcc tttctctctc ttctccacgc ggtttctcat tctctctctc 151 tctctcttcg ccgtcctatt tatattatct ctcctcagct ttcatttctc 201 CAATTCATTC ATTATCACAT TCCTTTACTC ACTCTCTCTC TCTCTCTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00050 Mean Expected Number 0.000 +strand -105 : -94 ACGCGTGTCtTC AC RSP00143 Mean Expected Number 0.001 +strand -106 : -97 GACGCGTGTC AC RSP00190 Mean Expected Number 0.008 +strand -133 : -127 TGAGTCA AC RSP00523 Mean Expected Number 0.004 -strand -98 : -104 ACACGCG AC RSP00864 Mean Expected Number 0.008 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -44 : -52 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -46 : -54 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -48 : -56 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -50 : -58 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -52 : -60 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -80 : -88 AGAGAGAGA AC RSP00999 Mean Expected Number 0.001 -strand -178 : -188 TCtCTATCTAA AC RSP01283 Mean Expected Number 0.000 -strand -45 : -61 GAGAGAGAGAGAGAGAA AC RSP01733 Mean Expected Number 0.008 -strand -69 : -74 CCGCGT Totally 17 motifs of 8 different REs have been found Description of REs found 49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: small basic membrane integral family protein |LOCUS: AT3G56950 |PROD: the same as GENE |complement(21088985..21090810) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +187 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.33 C - 0.18 1 tttgtaaaca attcttaaga aggctaattg tagtaattta tttgtaatta 51 ttagttaact gtgtaaagta aatactttat ccagtaataa cgtatcactt 101 tagttgatgt ctATTGGtta atagccgaag ctcgttccaa aatcgaagag 151 aatctataat ctcatcacga cacaccaaag ccaaaacctt tattgtcgga 201 AGCTGACTCA GACTCAAACA ATGTCTCTAG CGTCAATTAT ATGCTAAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.010 -strand -87 : -97 ATAGAcATCAA AC RSP00495 Mean Expected Number 0.008 +strand -139 : -132 TGTAAAGT AC RSP01205 Mean Expected Number 0.006 -strand -178 : -187 CCTTCTTAAG AC RSP01604 Mean Expected Number 0.004 +strand -143 : -136 ACTGTGTA AC RSP01640 Mean Expected Number 0.005 +strand +19 : +28 CaATGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: nucleolar essential protein-related |LOCUS: AT3G57000 |PROD: the same as GENE |21103247..21105271 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +342 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.20 1 tgaaaagaaa caccacttgt aatacataag gcggtcgtgc tctccggcag 51 aacaaaagtc gacgtcgatg gtcacaattc taggtttctt ggtctctttt 101 tctttttctg ggccttttaa aaaccctaaa acttaatggg cctattttac 151 tacaataagc ccttaaacga ttatataatc tgtgtgaaac aatacaaaaa 201 ACAAAAAATA AAAAAACGCC TACCTTTAAC TTCGAATTAG GGTTTATCAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +37 : +45 TTAGGGTTT AC RSP00279 Mean Expected Number 0.003 -strand -72 : -80 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -80 : -72 AAACCCTAA AC RSP00369 Mean Expected Number 0.001 -strand +45 : +37 AAACCCTAA AC RSP00445 Mean Expected Number 0.009 -strand -99 : -108 gAAAAAGAGA AC RSP00522 Mean Expected Number 0.009 +strand -188 : -182 CCACTTG AC RSP01209 Mean Expected Number 0.004 +strand -99 : -90 CTTTTTCTGG AC RSP01303 Mean Expected Number 0.006 +strand -81 : -72 aAAACCCTAA AC RSP01303 Mean Expected Number 0.002 -strand +46 : +37 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand +46 : +37 TaAACCCTAA AC SP017556 Mean Expected Number 0.001 -strand -130 : -137 CCATCGAC Totally 11 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G57080 |PROD: the same as GENE |21136836..21138615 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.32 C - 0.20 1 ataatagccg aatgatttgc tttgtttgca aggtattttt tatcaatgaa 51 aaatatgtgc aacattacca caaatgtagt ttgattgatt gatgtcacct 101 gctcgctcac ctatattagc tttcttcctt ctgttcttaa atcctaaaac 151 gacaacgttt agtctccctt taaatcccat cactggactc gacgactttt 201 GCTCAGATAA GGGAGACAAA AATGGAAGTG AAAGGGAAAG AGACAGCTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 +strand -54 : -41 AAACGACAaCGTTT AC RSP00447 Mean Expected Number 0.006 -strand -175 : -184 AaCAAAGCAA AC RSP00501 Mean Expected Number 0.006 -strand -96 : -102 CGAGCAG AC RSP01601 Mean Expected Number 0.007 -strand +33 : +26 TTTCACTT Totally 4 motifs of 4 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G57160 |PROD: the same as GENE |complement(21168589..21169795) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.30 C - 0.17 1 tagggaatag aatctggatt cacttcccaa aagcaaaagt taaaaaaaaa 51 aatcaagaaa atatttagga tatacattta aaacataaaa aaagttgact 101 aagatataat ttgataggat aaccgttaga aaataccttt aaaaagagta 151 aacctaattc gcctacaaat aaaaatgcgc ttttcctttt cctctttctt 201 CTCACTTTTT TTCTCTGTTG CATCATCTTC CAAACTCCCG AAGAAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.010 +strand -16 : -10 CCTTTTC AC RSP00445 Mean Expected Number 0.008 -strand +11 : +2 AAAAAAGtGA AC RSP00459 Mean Expected Number 0.003 +strand -106 : -97 TTGACTAaGA AC RSP00530 Mean Expected Number 0.008 -strand -152 : -163 TtTTTTTTAACT AC RSP00949 Mean Expected Number 0.003 -strand -100 : -107 TAGTCAAC Totally 5 motifs of 5 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G57220 |PROD: the same as GENE |21185438..21188080 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.33 C - 0.14 1 atgagtcttt gattatataa aaaaaaaaga tattagtaat ttgcctaatt 51 tcacatgaat cccatagact tatttatttc tttatacttt gcttttttgg 101 gcctttttga taattcataa ataagtggtg ttgatacgat gtcgtATTGT 151 tgtgcgtggg caagttgtaa ttaaatgcta caggctttga agcttcagcg 201 AAAAGTGGAA GAAGCAAATC CAGAGGCGGG GAACCAGAAA TAGCCAACGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00669 Mean Expected Number 0.001 +strand -191 : -178 TGATtATATAAAAA AC RSP00889 Mean Expected Number 0.007 -strand -42 : -48 CCACGCA AC RSP01091 Mean Expected Number 0.009 -strand -183 : -193 ATAtAATCAAA AC RSP01209 Mean Expected Number 0.008 +strand -109 : -100 CTTTTTTGGG AC RSP01499 Mean Expected Number 0.005 -strand +33 : +24 TTCCCCGcCT AC RSP01635 Mean Expected Number 0.001 -strand -9 : -19 CTTCAAAGCCT Totally 6 motifs of 6 different REs have been found Description of REs found 640. Group RE: B-box /AC: RSP00669//OS: Lycopersicon esculentum /GENE: PG/RE: B-box /TF: unknown 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G57280 |PROD: the same as GENE |21204820..21206695 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.27 C - 0.26 1 cctaagctta aaccagctaa accgaaataa ttaaatggat tcgttttttc 51 tcatctccga tccctaaagt caaagattaa accacactaa accgaaattg 101 tcatatgcgc gtaatttctt cgcaacattt tgaccgaaca acttcaaaat 151 caaacgagcg gacggtcaag attgtccgat cagtatcgtc tttttagtca 201 GTCAGTCCTG AACGCCGGCT AGATCAACCA CTCCATCTCT CGTGCTGACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00709 Mean Expected Number 0.004 -strand -168 : -176 TAATTATTT AC RSP01004 Mean Expected Number 0.009 +strand -172 : -163 AaTTAAATGG Totally 2 motifs of 2 different REs have been found Description of REs found 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G57340 |PROD: the same as GENE |21229951..21231463 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +202 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.32 C - 0.22 1 tgtaacaatt tcccataaat tactgaaccg aatcgggacc ggtttgatta 51 tatgcattaa caagtttgta accggaacaa aaccagacca aattgctcaa 101 ACAATtttcc agaaccggaa ctagtatttg tcgtttacgt cgtaccgaca 151 ttggtacgct aatcccagat ttaatcggaa ttgtgtctta tctctctaac 201 AACAAAATTG TTGTTACCTT CCCATTAGTC ATCTTGTAAA TTCTTCGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01009 Mean Expected Number 0.001 +strand -58 : -50 TACCGACAT AC RSP01010 Mean Expected Number 0.002 +strand -58 : -50 TACCGACAT AC RSP01091 Mean Expected Number 0.008 -strand -148 : -158 ATAtAATCAAA Totally 3 motifs of 3 different REs have been found Description of REs found 934. Group TF: DREB1A; DREB2A /AC: RSP01009//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB1A/DREB2A BS /TF: DREB1A; DREB2A ||Identical REs AC: RSP01610 RSP01763 RSP01771 RSP01779 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AGL18 |LOCUS: AT3G57390 |PROD: MADS-box protein (AGL18) |21244678..21246885 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.25 C - 0.24 1 aggcgataca cgaaatagag aagagatcca aaaccaaaac aagggcgtta 51 taaatgggaa gaaagttcca aaagaagaaa acagccactc acaccaagca 101 aagcaaatta gcaaagccac caaatatgga aaATTGCtac ttatagtaac 151 tcccatcttt ttatataata ccctaatttt ggtcctaatt ttccttcctt 201 AGCCCCTTTC CCAATATTTG ATCAATTTCT AAAGAAAACC CCTTCCTCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.001 +strand -104 : -95 AGCAAAGCAA AC RSP01032 Mean Expected Number 0.002 -strand -19 : -28 CCAAAATTAG AC RSP01114 Mean Expected Number 0.006 -strand -19 : -25 CCAAAAT AC RSP01208 Mean Expected Number 0.001 -strand -156 : -167 CCCTTGTTTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 40S ribosomal protein S2 (RPS2D) |LOCUS: AT3G57490 |PROD: the same as GENE |complement(21290643..21291925) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.27 C - 0.22 1 ttttcaagaa acatgcaata actgacacag aaaaaaaaaa cgaatcaaga 51 aacagtcatt acattacacg aatcatatgt tgggccttag tttagtaatg 101 ggcttataaa cCCAATaagc tcattttagc cagaaaaccc taactatctc 151 ttctcgtctg gagatataag tagaatcatt ttttgccgcc gtttctcgct 201 AACACACCGA AAACTGAATC AAATCTCCTA GCTCTTCTAC GCAAAATCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.001 +strand -19 : -12 TTTGCCGC AC RSP00279 Mean Expected Number 0.005 -strand -58 : -66 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -66 : -58 AAACCCTAA AC RSP01127 Mean Expected Number 0.007 -strand +16 : -4 CAGT-- ** bp --AGCG AC RSP01303 Mean Expected Number 0.009 +strand -67 : -58 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G57560 |PROD: the same as GENE |complement(21321802..21323289) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.26 C - 0.20 1 gagacgacga cgaacagaaa aaaaaaaaaa aaaagcctga gctctgtttt 51 atttcccgct acaagatgaa acgacatcgt ttaagtacaa aaagagacag 101 aacaacaacg tcagcgtttt gtatttcaca agtacgtcac cgtttaaact 151 tagggctagg acagcatctt tgtgtctacg ctccacgtgg acattaatca 201 TTTGTTCATT TTGTTGTTTA ACTAAAATCG TCGAAGAAGA TCTGAGAGAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.001 +strand -149 : -142 TTTCCCGC AC RSP00120 Mean Expected Number 0.000 +strand -132 : -119 AAACGACAtCGTTT AC RSP00153 Mean Expected Number 0.002 +strand -18 : -9 CCACGTGGaC AC RSP00280 Mean Expected Number 0.006 +strand -19 : -10 TCCACGTgGA AC RSP00280 Mean Expected Number 0.005 -strand -10 : -19 TCCACGTgGA AC RSP00682 Mean Expected Number 0.002 +strand -19 : -10 tCCACGTGGA AC RSP00682 Mean Expected Number 0.001 -strand -10 : -19 tCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -18 : -11 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -11 : -18 CCACGTGG AC RSP00734 Mean Expected Number 0.001 -strand -80 : -87 CAAAACGC AC RSP01734 Mean Expected Number 0.008 +strand -19 : -13 TCCACGT Totally 11 motifs of 8 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: AP2 domain-containing transcription factor |LOCUS: AT3G57600 |PROD: the same as GENE |21343760..21344840 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.35 C - 0.18 1 gtttgagcct aggtagaaga attatataaa tatgaagttg agatcaaaaa 51 tggttaaaag tttttttttt tttttttctt ttgaaaataa cagaatatga 101 gaaaagcaac ggtcacatgc gcgggtgaaa aaaGCAATtc tctaggaatt 151 gaagcgaacc gtgacattat ttaagcactc acatactctt tctaagctcc 201 ATTATCATAT CCTCTTCTTC CTTCTTCACT ATCAATCTTC TTCTCCACTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.008 +strand -113 : -106 TAACAGAA AC RSP00447 Mean Expected Number 0.004 +strand -101 : -92 AGaAAAGCAA AC RSP00741 Mean Expected Number 0.002 +strand -153 : -142 AAAtGGTTAAAA Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: adenylosuccinate synthetase (ADSS) |LOCUS: AT3G57610 |PROD: the same as GENE |complement(21345261..21347635) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.15 T - 0.37 C - 0.22 1 ttacagcatt caattatggc atgttaacaa aacgctgact ttttaaattc 51 agtttagttc ttgctttgtg ttaagaccgg ttttagtctc ggtttaacca 101 aattaatttc attacatatt tcatgtaaag gtcaaaatgg tcattttagt 151 tcacctgagc tcagtttgaa aaaaggtctt cctcaggttt ccccatactc 201 AAGTGCCGGC GAACCCTAAG ACTTTTGATA CCTCTTCTCT TCTCTCTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.008 +strand -71 : -65 GGTCAAA AC RSP00653 Mean Expected Number 0.009 +strand +40 : +50 TTCTCTCTCtT AC RSP00734 Mean Expected Number 0.002 +strand -173 : -166 CAAAACGC AC RSP00864 Mean Expected Number 0.004 -strand +49 : +41 AGAGAGAGA AC RSP01304 Mean Expected Number 0.003 +strand +10 : +19 cGAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase family protein |LOCUS: AT3G57710 |PROD: the same as GENE |complement(21396936..21398376) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.18 T - 0.39 C - 0.20 1 tccatcagcc tgtcgtagaa aactttttgg ttaggcttat tttgtgttcc 51 caccttatta tcttttggat gggcttatat tgttttccca ccttatgagc 101 ttttagttgg gctttatttt tctataggcc cagaaacttg acccaagact 151 ttttattgct tcttcctttc ttatgacaca ccgttttcaa ccgagagtcg 201 TTTGGGATCA GAAAAGAAAT GGCTTTTGAC ACTTCAGAAG CTTTTAGGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.004 +strand -11 : -5 ACCGAGA AC RSP00862 Mean Expected Number 0.007 -strand -30 : -38 AGAAAGGAA AC RSP00871 Mean Expected Number 0.004 -strand -19 : -28 GGTGtGTCAT AC RSP01024 Mean Expected Number 0.009 +strand -69 : -63 AGAAACT AC RSP01030 Mean Expected Number 0.003 +strand -69 : -62 AGAAACTT Totally 5 motifs of 5 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein kinase, putative |LOCUS: AT3G57750 |PROD: the same as GENE |21404956..21406265 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.33 C - 0.12 1 tatgaagagg gctaactggt gggcagagta gctacagtta acttatttgc 51 tcaatgtgta atatttaaga agatgtggat caaattgaaa tatctaatta 101 tgggagtaga atgtatatta taaatgtATT GGgtcaatat ttaataacta 151 aaacgacatg gataagatta taatatctaa tttgtcggaa tttgaccact 201 CAGTAGTTGA CTATCACAAA TCAAGTTTGC TTCTTTGCAA AAGCCAAAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.010 +strand -157 : -147 TATTTGCTcAA AC RSP00301 Mean Expected Number 0.008 -strand +39 : +33 TGCAAAG AC RSP00383 Mean Expected Number 0.008 -strand -4 : -10 GGTCAAA AC RSP00949 Mean Expected Number 0.005 -strand +13 : +6 TAGTCAAC AC RSP00961 Mean Expected Number 0.006 +strand +36 : +43 TGCAAAAG AC RSP01128 Mean Expected Number 0.008 +strand -166 : -150 CAGT-- +9 bp --TGCT AC RSP01742 Mean Expected Number 0.000 +strand +4 : +16 TaGTTGACTATCA Totally 7 motifs of 7 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 1549. Group TF: WRKY11 /AC: RSP01742//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS4 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G57785 |PROD: the same as GENE |complement(21415551..21416194) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.35 C - 0.15 1 ggttggtgaa aacaacattg cttttgctta gtaaagagat tttggattct 51 tatatttctt tgtgagagaa ttggaaattt ggtttttgtt ttctccaaaa 101 tgactacgtt gtgaATTGTg tgagcacgag ttctccaacg acaccgtttt 151 caacaagtaa ttgtaggttt tctcacacta gagtttattt acgtctaatc 201 ATCAATATAT CACTGAGAGT GAAATCGGAA TCACAAAAAT GGCGTCGACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 +strand -65 : -52 cAACGACACCGTTT AC RSP00756 Mean Expected Number 0.001 +strand -29 : -22 CTCACACT AC RSP01072 Mean Expected Number 0.010 -strand -40 : -49 ATTACtTGTT Totally 3 motifs of 3 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: OTU-like cysteine protease family protein |LOCUS: AT3G57810 |PROD: the same as GENE |21426776..21428925 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +537 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.24 C - 0.22 1 aaaaaaaaca tttctcatgc aaaataactg gcaaacataa aaacgggttg 51 ggtaacctga aacaaaactc cagcccaaaa tgatgcccgc ttatacggcC 101 CAATaaagct aaagtttgct gcgaacttaa aacggcagcg tttgctaatt 151 agattgagta aagcgatttc acggtgcaac agtcgaagct tctcgacttg 201 TTATTGTTTC GTAGCTTCGT CGGTCCAACA AGACCTTGCG CTAGAAGAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01205 Mean Expected Number 0.008 -strand -66 : -75 CCGTTTTAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: squamosa promoter-binding protein, putative |LOCUS: AT3G57920 |PROD: the same as GENE |complement(21455298..21456952) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.11 T - 0.36 C - 0.27 1 tttatttgtt cagatgttac aaaaaccacc aaaacgcacc aacatcccaa 51 aacgcaaacg ctaaaaacac gtagctgtcg tggactagtg tcaatcactc 101 ttgagtgtct cttcttttgt cagcttctct ttctttcttt ctctctcttc 151 tcttctctct gattctttaa aagatagcaa catctaaaat ctgcaaaacc 201 ACATTTTCTT TCCTCTATTC TCCTCCGTCC TTACTATTTC CAGAGTTCAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00404 Mean Expected Number 0.009 -strand -143 : -149 TTTGCGT AC RSP00444 Mean Expected Number 0.001 -strand -58 : -71 gAGAAAGAAAGAAA AC RSP00444 Mean Expected Number 0.001 -strand -62 : -75 AAGAAAGAAAGAgA AC RSP00525 Mean Expected Number 0.007 -strand -184 : -190 ACATCTG AC RSP00734 Mean Expected Number 0.002 +strand -171 : -164 CAAAACGC AC RSP00734 Mean Expected Number 0.002 +strand -153 : -146 CAAAACGC AC RSP00857 Mean Expected Number 0.001 -strand -184 : -193 aCATCTGAAC AC RSP00864 Mean Expected Number 0.008 -strand -53 : -61 AGAGAGAGA AC RSP01260 Mean Expected Number 0.001 -strand -127 : -134 CTACGTGT Totally 9 motifs of 7 different REs have been found Description of REs found 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G58010 |PROD: the same as GENE |complement(21486790..21488475) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.42 C - 0.20 1 acatttaaaa ccatttccca aaaattttat tagaccttta ttgtatgttc 51 taatattatt ttgttacaag attttttttt cagatattat tatctttatt 101 tatgcaaatt cagaatttaa attaaaactg ataaatttag ttgggttctt 151 ctgctgctgc tgctctcgtc ttcttctacc tactcattcc tcagactaat 201 AAAAAGCCAA TCTTTGACCT TTTCCCCCTT ATTCAATGGC ATTGATCCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00985 Mean Expected Number 0.005 +strand -62 : -53 AGTTgGGTTC AC RSP01472 Mean Expected Number 0.003 +strand -26 : -16 TCTACCTACtC Totally 2 motifs of 2 different REs have been found Description of REs found 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1341. Group RE: Box-I /AC: RSP01472//OS: Pisum sativum /GENE: PsCHS1/RE: Box-I /TF: unknown ||Identical REs AC: RSP01528 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: bZIP transcription factor family protein |LOCUS: AT3G58120 |PROD: the same as GENE |complement(21531951..21534304) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +249 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.10 T - 0.41 C - 0.24 1 aagagagacc tcaaatcttt ttaatttttc ttccgaaaca gctgtttcat 51 agctgtccga tctctctcgc cccccatgtg accccactca gagatataaa 101 ccctttgaga tcgaatccat ttatataatt ttatttcgct ttattctatt 151 ataaaaatta tcttatctca tgcatccctc tctctttcta tctcttactt 201 CTGTTTTGTA TAACTACTCT TTGTTATACA TAGCCATTTT AGTTACTCTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.007 +strand -82 : -71 ATTTATATAAtT AC RSP00157 Mean Expected Number 0.007 -strand -71 : -82 AaTTATATAAAT AC RSP00171 Mean Expected Number 0.004 +strand -198 : -193 GAGAGA AC RSP00462 Mean Expected Number 0.002 -strand -28 : -40 GcATGAGATAAGA AC RSP00937 Mean Expected Number 0.002 +strand -40 : -28 TCTTATCTCATgC AC RSP01053 Mean Expected Number 0.010 -strand -34 : -42 GATAAGATA Totally 6 motifs of 5 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 440. Group RE: I-box /Group TF: IBF /AC: RSP00462//OS: Lycopersicon esculentum /GENE: RBCS1; RBCS2; RBCS3A;/RE: I-box /TF: IBF 866. Group TF: GBF /AC: RSP00937//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: I box /TF: GBF 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G58140 |PROD: the same as GENE |complement(21540708..21543549) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.32 C - 0.17 1 attgaattgg tcaataagtt tatgtagaaa gctcttattg gtcaataaga 51 tttgagattt caacaaaatc agaaaacaat aaacatcaag gtgcaatacc 101 taatttagga taaacataag ttccatttgc aatttttACA ATtcagttta 151 gcgtaggggt ataatagtaa aatcgatgga ttcaatccat caaaatttcc 201 AACCCTACTG CTACTCATGA CACGTCATCT CTCCTCGTAA TCGGAGATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.005 +strand +19 : +28 GACAcGTCAT AC RSP00460 Mean Expected Number 0.005 -strand +26 : +17 GACgTGTCAT AC RSP00916 Mean Expected Number 0.002 -strand +29 : +20 GATGACGTGT AC RSP00997 Mean Expected Number 0.003 -strand +29 : +20 GATGACGTGT AC RSP01035 Mean Expected Number 0.007 -strand +25 : +19 ACGTGTC AC RSP01258 Mean Expected Number 0.003 -strand +27 : +20 TGACGTGT AC RSP01527 Mean Expected Number 0.002 +strand -141 : -130 TCAACAAAaTCA AC RSP01654 Mean Expected Number 0.006 -strand +29 : +20 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 -strand +29 : +18 GATGACGTGTCA AC RSP01741 Mean Expected Number 0.000 -strand -184 : -196 TTATTGACCAAtT Totally 10 motifs of 9 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G58460 |PROD: the same as GENE |complement(21634160..21637420) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.21 T - 0.28 C - 0.18 1 catgacatac ggaattagct catcacaaaa aattattcaa tccgttgcaa 51 ctttataatt tgcgaggaag agatgaaata ttgatgtttg ctctcagcga 101 ataaaaagtt tttggtccga cccggttcta caaactttac cagaatcaaa 151 gtgctaaacc gggcgaagaa gttaagatct cgagaagagt cttttacggt 201 GGGAGAGAAA CGAGAGTTGT TCGTCTTCTT CCATGGTCAT TGAAATTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.010 -strand +5 : -2 CTCCCAC AC RSP00940 Mean Expected Number 0.005 +strand -9 : +1 TTtTACGGTG Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PP2A-3 |LOCUS: AT3G58500 |PROD: |complement(21646203..21650079) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +191 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.31 C - 0.20 1 agtttttgtg tgtttaatta aaagaaataa aactacttta caaattttgt 51 gtgtattacc tatttaaaca cttttataag aaaactaaag ggtgttttag 101 TCAATttatc atttagatct caacgaggag gatataatgg tcaaatcaag 151 acacagctcg aaagctacaa acccactcgc ccctttacct cacgcgcccc 201 TTTGTTTTGA TTTCCTCTCT CACTCTGCAC ACGAAGGCGA GAGAGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 +strand -63 : -54 TGGTCAAaTC AC RSP00495 Mean Expected Number 0.010 -strand -159 : -166 TGTAAAGT AC RSP00863 Mean Expected Number 0.001 -strand +20 : +12 AGAGAGGAA AC RSP00864 Mean Expected Number 0.001 +strand +40 : +48 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +42 : +50 AGAGAGAGA AC RSP00879 Mean Expected Number 0.009 +strand -42 : -36 CGAAAGC Totally 6 motifs of 5 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G58520 |PROD: the same as GENE |complement(21654333..21656463) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +209 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.29 C - 0.20 1 tcgaaatatc aaaagcgtga acctttaaac gagcctagtc ttcccgagtc 51 gcacgaatcg agtctagacg cgttggaact tatttttgca aatttggctg 101 tgtaccgcag ataaaaagaa gttccaagtt tttaggttct gtctgcaaaa 151 acatatcgcg aaccaactta aaaggcttac tttgactgta gcctgtgggc 201 CTAGAGTTAG AAGTCGAAAA ATCTCGCTTT TAGATTCGTT CAGGCATTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.009 +strand +17 : +24 AAAAATCT AC RSP01191 Mean Expected Number 0.002 -strand -3 : -10 CCACAGGC Totally 2 motifs of 2 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: F-box family protein-related |LOCUS: AT3G58530 |PROD: the same as GENE |21656524..21659340 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +212 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.23 T - 0.29 C - 0.17 1 ttagtgttct ctcggagttt agttaggact tatcattgaa agaatgaata 51 gagagaagta ggggagagta atgcagagaa ggtgctcgac gaaatgcctg 101 aacgaatcta aaagcgagat ttttcgactt ctaactctag gcccacaggc 151 tacagtcaaa gtaagccttt taagttggtt cgcgatatgt ttttgcagac 201 AGAACCTAAA AACTTGGAAC TTCTTTTTAT CTGCGGTACA CAGCCAAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01191 Mean Expected Number 0.001 +strand -58 : -51 CCACAGGC Totally 1 motifs of 1 different REs have been found Description of REs found 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G58550 |PROD: the same as GENE |complement(21660341..21661264) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.30 C - 0.20 1 aacgaactgt gaacaacttg atatatttta tatgtacccc tccaataact 51 gaagatgatc caaattccaa aactcaaatt tcaattcaga aattagacat 101 gttaaccagt actcattata taatcctttt aaatcaagtt tcttgcagac 151 ttagaactct cgagtatccc tataactaga gagggaaaca tatgtgaaca 201 AGAAACAAGT CTTATAAAAA GCCACATTAA GTTCTTACTC TGCTGCATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.010 -strand -172 : -180 AAAATATAT AC RSP01030 Mean Expected Number 0.007 -strand -58 : -65 AGAAACTT AC RSP01469 Mean Expected Number 0.009 -strand -4 : -13 TCACATaTGT AC RSP01711 Mean Expected Number 0.008 -strand -22 : -31 CTAGTTATAG Totally 4 motifs of 4 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G58600 |PROD: the same as GENE |complement(21679173..21682140) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.23 T - 0.31 C - 0.19 1 taaagtaaat gtggacgttc tttctattgg ttggtgttgg tccatcaact 51 gcttcaatgt tgacttccca gcggtggagg atacataggt gtctagtcta 101 tatcagggtt tcaaagtcaa cgtaatagac ggttcagatt taacagaggt 151 agcttagatc tgatggtttt gaagtagctc agattgaagt aatggtatac 201 ACTACACACA CCTAACGCGA AACCTCTACG TTTCTTCGTC TTCGCGACTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.007 -strand +34 : +25 GAaACGTAGA AC RSP00232 Mean Expected Number 0.007 +strand -81 : -72 ACGTaATAGA AC RSP01008 Mean Expected Number 0.010 +strand +10 : +16 ACCTAAC AC RSP01086 Mean Expected Number 0.008 +strand +25 : +34 TcTACGTTTC AC RSP01600 Mean Expected Number 0.006 +strand -92 : -85 TTTCAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G58670 |PROD: the same as GENE |complement(21714367..21717027) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +736 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.26 C - 0.19 1 gtactaccaa aaaagttgca gtttgttctc gtcctaaaaa aataggtgga 51 attatttatt cgagcttaaa aagcaaaggg ggttgaaatt gactaatttg 101 aaaagtaagg ggagagagag tgagacttga cgtttttaaa cgactcacaa 151 agcaaaagaa acaaaaagaa gagatcaaat tctgattcct ccttccgact 201 AAAAAACCAT TTCCATCATC GGTTTCCTCC GATACATCTC CTCGTCGCCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00865 Mean Expected Number 0.001 +strand -90 : -82 GGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: WRKY69 |LOCUS: AT3G58710 |PROD: WRKY family transcription factor |21725984..21728129 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +185 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.11 T - 0.27 C - 0.17 1 ttgcataatt atgcatggac ttaatcaaaa tgtccagcta attaaagaaa 51 taatttgatt agcaaacctc atggtattaa taaaataaaa ttccacgaga 101 gaagagaacc tttcaaaaaa taaataaact aatccactac aaaacaactg 151 gtcatatctt tattcaaata aaatagcaat gaccgatata ataacaatat 201 AATACCTTTG ATATTTGCCT GCACGTCCCC AAACAAGTAG AGAATAATAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.003 +strand -130 : -123 ATGGTATT AC RSP00349 Mean Expected Number 0.000 -strand -182 : -190 TCCATGCAT AC RSP00350 Mean Expected Number 0.000 -strand -180 : -190 aGTCCATGCAT AC RSP01058 Mean Expected Number 0.008 -strand -62 : -69 TAGTGGAT AC RSP01435 Mean Expected Number 0.002 +strand +26 : +35 TCCCCAAaCA Totally 5 motifs of 5 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays, Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1) 335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SHP1 |LOCUS: AT3G58780 |PROD: |21749437..21752884 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +690 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.46 C - 0.16 1 ccacctactc ttctcttctt tctttttttc tttcttatta ttaaccattt 51 aattaatttc cccttcaatt tcagtttcta gttctgtaaa aagaaaatac 101 acatctcact tatagatatc catatctatt tatatgcatg tatagagaat 151 aaaaaagtgt gagtttctag gtatgttgag tatgtgctgt ttggacaatt 201 GTTAGATGAT CTGTCCATTT TTTTCTTTTT TCTTCTGTGT ATAAATATAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.003 +strand -50 : -41 AAaAAAGTGT AC RSP00756 Mean Expected Number 0.001 -strand -38 : -45 CTCACACT Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein, proline-rich protein A41R |LOCUS: AT3G58800 |PROD: the same as GENE |21759205..21760905 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +334 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.29 C - 0.14 1 aaataataat taaaaagtac aaaaagttac ttttttctta atttatgtgc 51 aaaacttaaa acatcaaact ttatgcaaca gagatgataa ctttaaatta 101 tttccttggt ttaaaacggc aggaactgcg agttataaat gcaaaacgga 151 gcgcttttca ccagaataat aaaagaaaaa acggttggga gttgaatgtt 201 ATTATTCACA ATCGTGAGCA AACGGAACAA AGTTTAAAGT CGTCGTTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00358 Mean Expected Number 0.001 -strand -7 : -14 CAACTCCC AC RSP00428 Mean Expected Number 0.005 +strand -25 : -14 AAAAAACGGTTg AC RSP01056 Mean Expected Number 0.003 +strand -178 : -168 AAaGTTACTTT Totally 3 motifs of 3 different REs have been found Description of REs found 343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G58840 |PROD: the same as GENE |complement(21768289..21769749) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +317 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.23 C - 0.22 1 tatataaaac tcatgaaaca aggaagacaa aatagaactc accgaacaag 51 aataataata actctgcaag caacgatttg ggcctgatgg agcttaacta 101 ctaatggacc ttaaggccca tataacagag atcactgaaa atgatgcagc 151 caagtggact tgctttaaac acgtgggtat tcaggaccgc ccaatttctc 201 AACGCCATTT GTTGTCACTC ACTCTGTAAA GTATAAACCC TAAAAATCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.002 -strand -56 : -67 ATCATTTTCAgT AC RSP00279 Mean Expected Number 0.004 -strand +43 : +35 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +35 : +43 AAACCCTAA AC RSP00495 Mean Expected Number 0.005 +strand +25 : +32 TGTAAAGT AC RSP00522 Mean Expected Number 0.009 -strand -44 : -50 CCACTTG AC RSP00683 Mean Expected Number 0.005 +strand -52 : -43 GCCAAGTGGA AC RSP00297 Mean Expected Number 0.000 +strand -86 : +42 GGCCCA-- ** bp --ACCCTAA AC RSP01255 Mean Expected Number 0.002 +strand -32 : -25 ACACGTGG AC RSP01303 Mean Expected Number 0.008 +strand +34 : +43 TAAACCCTAA AC RSP01304 Mean Expected Number 0.005 +strand +34 : +43 TaAACCCTAA Totally 10 motifs of 10 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: TT12 |LOCUS: AT3G59030 |PROD: |21830048..21833015 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.17 T - 0.20 C - 0.20 1 atattaatcg gcagtaaaat ctctaagtcc atttacggta accagagaat 51 ggttgttaca ctatgatcat caagattaag accaaacagt cacaagagat 101 cttaaccatt gatTCAATtt tggtcaacga ctcgaactcc caacataacc 151 aaaacagtca gtcgtaataa aaagacgccc cggtaggcgt ataacagaac 201 AACAACACCA AAAGAAAAGG GAAAAAAAAA ACAGAGGAAC TAATAAACGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00778 Mean Expected Number 0.002 -strand -85 : -94 TGAATCAATG AC RSP01114 Mean Expected Number 0.004 -strand -78 : -84 CCAAAAT AC RSP01250 Mean Expected Number 0.006 -strand -80 : -89 AAAATTgAAT Totally 3 motifs of 3 different REs have been found Description of REs found 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: amine oxidase family protein |LOCUS: AT3G59050 |PROD: the same as GENE |complement(21835673..21838486) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +336 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.28 C - 0.20 1 aaagtgacac gtgtcttaca agaggagcga gtttatccta atcacatact 51 cgagcgtgta ggtttccgat taaagcgaag cagaaaaaaa ttactaaaat 101 aataaaaacg tatagaatgt gattaattaa gtcaaCCAAT aagcatctta 151 caaatcagca ctctgaaaac aaacacgatt attaatagaa aaagctgcga 201 CCCGACTCCT GAGCCTCTCT CTTTCTATCG CTCTTTGATT TTGTTTCTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 +strand -195 : -186 GACaCGTGTC AC RSP00143 Mean Expected Number 0.002 -strand -186 : -195 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -195 : -186 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -186 : -195 GACACGTGtC AC RSP00524 Mean Expected Number 0.009 +strand -194 : -188 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -187 : -193 ACACGTG AC RSP00681 Mean Expected Number 0.004 -strand -72 : -80 TAATTAATC AC RSP00861 Mean Expected Number 0.001 -strand +26 : +18 AGAAAGAGA AC RSP01012 Mean Expected Number 0.008 -strand -138 : -144 ACCTACA AC RSP01017 Mean Expected Number 0.004 -strand +48 : +41 AGAAACAA AC RSP01035 Mean Expected Number 0.007 +strand -192 : -186 ACGTGTC AC RSP01035 Mean Expected Number 0.009 -strand -189 : -195 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -194 : -187 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -187 : -194 ACACGTGT Totally 14 motifs of 9 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-directed RNA polymerase I, II, and III |LOCUS: AT3G59600 |PROD: the same as GENE |22027362..22029073 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +244 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.29 C - 0.20 1 ccatgcacct actccaatat ttcaaacttc tgatctctcc tttaatgcaa 51 catatgtaat aaacaacaaa atatacatgg aatgtctcgg aaaaacacaa 101 atctataggg tattttctgt aataagtaaa aatataagga aaatatgtaa 151 ataaaccaaa ctacaaggaa tatatgtaat aatatgaaaa agtaaaaaac 201 AAAAAATCCT TTCTCTCTCG CTTCTCTTCT TCTCTGCCCC TCCTTAACAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.010 +strand -199 : -193 CATGCAC AC RSP00021 Mean Expected Number 0.001 +strand -14 : -3 AAAAAGTAAAAA AC RSP00104 Mean Expected Number 0.007 -strand -121 : -127 CCATGTA AC RSP01633 Mean Expected Number 0.002 +strand -161 : -151 CTTTAATGCAA Totally 4 motifs of 4 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G59650 |PROD: the same as GENE |22044152..22045134 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.33 C - 0.21 1 tttctagtaa cctttaaaaa acgttgtaat tcagaaaaac gtgaaaccaa 51 acgggctaca aaatatatta aaacacagag tacaacaggc ttttggtttg 101 agcccaaaca agcccattta aatctattta gtctgtaaca taagtcacgt 151 gcacctatca cgtgatcatc ttctttcttc cttttttctt gtcatctgtt 201 ACACATCGGT TAGGGTTTTA GTTTCTCTTA CCGAGATTCA AATGGCGCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +10 : +18 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +18 : +10 AAACCCTAA AC RSP00421 Mean Expected Number 0.007 +strand +30 : +36 ACCGAGA AC RSP00752 Mean Expected Number 0.000 +strand -44 : -35 ATCACGTGAT AC RSP00752 Mean Expected Number 0.000 -strand -35 : -44 ATCACGTGAT AC RSP00891 Mean Expected Number 0.008 +strand -141 : -133 AAAATATAT AC RSP00978 Mean Expected Number 0.003 +strand -44 : -35 ATCACGTGAT AC RSP00978 Mean Expected Number 0.002 -strand -35 : -44 ATCACGTGaT AC RSP01303 Mean Expected Number 0.002 -strand +19 : +10 aAAACCCTAA Totally 9 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 714. Group TF: G-box binding TF /AC: RSP00752//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 4 /TF: G-box binding TF 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: small nuclear ribonucleoprotein F |LOCUS: AT3G59810 |PROD: the same as GENE |22107492..22108885 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +326 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.28 C - 0.16 1 ctgtagagaa agcaaacgag agagagacga gaacagaaga aactgtgagg 51 tcgaaccgaa acgcactgga gatttaattt caccctccaa agtaaaataa 101 taaaatctat aaggactaat gtTCAATtat tattagtttt aatatgaaaa 151 ctcgatcgaa tcgaaataac aataatcata tagtatatag ttttggaaat 201 AAATAATAAA AGCCCTTAGG ACCGATTCGT TATTTCTTCG CTCTCTCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand -182 : -174 AGAGAGAGA AC RSP00953 Mean Expected Number 0.006 +strand -77 : -69 CAATTATTA Totally 2 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G59840 |PROD: the same as GENE |complement(22116499..22117175) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.19 T - 0.28 C - 0.15 1 atggatatat gtaaaattac aaaaaaacta ccttgtatgt cgtattttaa 51 gggtatgggt tctaattgga atttatatga aataaaaggg catatagtta 101 aattccatat tttcgtgttt aaatgggccc aagtgaagcg cagcttaata 151 attcaaaggc ccaatgtaac aaactcagca gatcagaagg ggaaaaagat 201 AAACCCTAAT TCCTCAGATT ACAATTTGAG AACCACCGAT TCGAGAGTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +9 : +1 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +1 : +9 AAACCCTAA AC RSP00566 Mean Expected Number 0.008 +strand -170 : -161 CCTTGTATgT AC RSP01303 Mean Expected Number 0.003 +strand -1 : +9 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -1 : +9 TaAACCCTAA AC RSP01499 Mean Expected Number 0.007 -strand -7 : -16 TTCCCCtTCT Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: NADP-dependent oxidoreductase, putative |LOCUS: AT3G59845 |PROD: the same as GENE |complement(22117222..22118812) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.34 C - 0.15 1 gtaattttgt tggtcactag tcattatcac agtactatga ttatgaatta 51 gaccatacac tattttaaat tttatcttac caaacatact ttatgcatgc 101 aattcataat catagtactg tgataatgac tatgatgagc ccattctatg 151 tatgatggga gatgcaccaa tttaaacttt gttcagtttt gaagatatat 201 AGATCTGACC AAAGCAAGAA GGGCTTTTAC TAAGAGTAAA ACAGAGGAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.009 -strand -18 : -27 AACAAAGTtT AC RSP00447 Mean Expected Number 0.006 +strand +8 : +17 AcCAAAGCAA AC RSP01217 Mean Expected Number 0.000 +strand -60 : -49 CCATTCTATGTA AC RSP01236 Mean Expected Number 0.001 -strand -66 : -75 TCATAGTCAT Totally 4 motifs of 4 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1124. Group TF: LFY /AC: RSP01217//OS: Brassica oleracea /GENE: BoCRC/RE: CL2 /TF: LFY 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: chloroplast chaperonin 10, putative |LOCUS: AT3G60210 |PROD: the same as GENE |complement(22262219..22263800) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.29 C - 0.17 1 aaaatgtttt aaaacttcta ttttattttt ttcaacaatt ttgttttttt 51 ctaagtgtta aaattttaaa atattttctt caaaaccgta ttaagagaac 101 tagctttcaa agatgagaag caaaagtatt cgggccaaca tagttaggcc 151 caaactaaat caaacaaagc acacaaggaa ggaagcatca agagaagtct 201 GTAGAAGAAA GGTTTGTCCA ACAACACAGC AAGCACGAGC GAATCTCCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.009 +strand -96 : -89 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G60260 |PROD: the same as GENE |22284900..22288123 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +378 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.27 C - 0.17 1 agaatcttaa aaagatgctt aaaaatagag aagattgaaa gataataata 51 aaaaaaatga attagaagat tgtcgttgac gtcgtccgac ttaaataccg 101 atgaccgcac gagtcattat tttccgttac taagcttttg atagcgactg 151 aacaacacgc gccagatcct ttagttgtaa atccccattt ttattttctt 201 AAACCCAAAG AAAGAAAAAA AAGAAGAGAA ACGGCCGAAT CTTCATAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -95 : -86 CGCACGaGTC AC RSP00158 Mean Expected Number 0.005 +strand -9 : +2 TATTTtCTTAA AC RSP00523 Mean Expected Number 0.005 +strand -46 : -40 ACACGCG AC RSP00646 Mean Expected Number 0.000 -strand -3 : -16 GAAAaTAAAAATGG AC RSP01031 Mean Expected Number 0.008 +strand -200 : -193 AGAATCTT AC RSP01639 Mean Expected Number 0.006 +strand -133 : -124 GATTGTCGTT Totally 6 motifs of 6 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G60360 |PROD: the same as GENE |complement(22323285..22325375) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +398 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.31 C - 0.18 1 tacattgaaa tttggaacgg tagatgtgca atgctcatca catttggaaa 51 gttaattacg aaattttcat ctaaagacgt taagacattt tatgtgtgga 101 aactataatt tgcaagtaaa gcaactaaaa cgataaaaag ggtaaatgag 151 taattgcgac gtatccacta aacccttagt ctcagctaga aggttcggtt 201 TGAGTTTTCT TTATCCCCAA AAAACCCTAA ACTCTTCTTC TCGCCGACTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.007 -strand -1 : -10 AACCgAACCT AC RSP00279 Mean Expected Number 0.002 -strand +30 : +22 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +22 : +30 AAACCCTAA AC RSP00442 Mean Expected Number 0.009 -strand -147 : -156 TAACTTTcCA AC RSP00447 Mean Expected Number 0.007 +strand -86 : -77 AGtAAAGCAA AC RSP00749 Mean Expected Number 0.005 -strand -137 : -148 ATTTcGTAATTA AC RSP00751 Mean Expected Number 0.002 +strand -74 : -63 AAAaCGATAAAA AC RSP01058 Mean Expected Number 0.005 -strand -31 : -38 TAGTGGAT AC RSP01303 Mean Expected Number 0.004 +strand +21 : +30 aAAACCCTAA Totally 9 motifs of 9 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G60520 |PROD: the same as GENE |complement(22372505..22373554) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.08 T - 0.45 C - 0.22 1 cacctcccaa gctccaactg aaaacgactg caaagcaacc tgcggtctct 51 acctgcctta ttacgctatt atactttttt attatttatt taacatattt 101 cttggttttt taaatattat tattatttat ggaccgactt gcgaatataa 151 taagttttcc ataaccaatt tatatatctt tttttctcct tctttataga 201 ATCAATTCTT CCCTTTTTTA TTTTGTTTAT CTCTCTCTCT CTCTCATTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.002 +strand -172 : -166 TGCAAAG AC RSP00447 Mean Expected Number 0.000 +strand -172 : -163 tGCAAAGCAA AC RSP01091 Mean Expected Number 0.002 +strand -5 : +6 ATAGAATCAAt AC RSP01283 Mean Expected Number 0.000 -strand +45 : +29 GAGAGAGAGAGAGAGAt AC RSP01283 Mean Expected Number 0.000 -strand +43 : +27 GAGAGAGAGAGAGAtAA AC RSP01638 Mean Expected Number 0.001 +strand -173 : -163 CTgCAAAGCAA Totally 6 motifs of 5 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: VAP27-1 |LOCUS: AT3G60600 |PROD: vesicle-associated membrane protein |22411370..22413678 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.36 C - 0.18 1 aaaaagaaag ttatacgtta cgttgtgaaa tatgatcaga ttataatgta 51 tattctttac tttagttgaa ttgttgttgt tgtaattcat ctccacgcgt 101 ttgcgattag ggcgcgtttg cgtttttaTC AATtttaaat gaattgacag 151 tattaccctt gagaaatgaa caagacaaat agcgatgtcc cactctattc 201 ATTAGCTCTG TCTAATCTCT CTCGATCGAC GACTGCTCTC TCTCTGAACC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00508 Mean Expected Number 0.002 +strand -81 : -70 GCgTTTTTATCA AC RSP00864 Mean Expected Number 0.002 -strand +45 : +37 AGAGAGAGA AC RSP00943 Mean Expected Number 0.004 -strand -32 : -42 TCATTTCtCAA AC RSP01401 Mean Expected Number 0.001 +strand -55 : -45 GACAGTaTTAC AC RSP01596 Mean Expected Number 0.004 +strand -42 : -32 TTGaGAAATGA Totally 5 motifs of 5 different REs have been found Description of REs found 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: transketolase, putative |LOCUS: AT3G60750 |PROD: the same as GENE |22464694..22468127 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +285 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.16 1 tagattttcc atctttgggt gcttttataa accggcttaa ccagagttgg 51 taggcttgat acttgaatct ctttctggtt ttgtatattc aagaataagc 101 aaacatttcc ttaaaaataa cttttttttt gtcgtacctc attttaaaaa 151 agatatttta tcctatttca ttatggcgga atatccaaag aacaaaaaat 201 GGTAGTAATA AAAATAGCGA AAGGCATAGA GGATCACTAA ACTCTTAGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.002 -strand -125 : -133 AGAAAGAGA AC RSP01437 Mean Expected Number 0.004 -strand -34 : -42 AATAGGATA Totally 2 motifs of 2 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G60780 |PROD: the same as GENE |22473632..22474760 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.28 C - 0.23 1 aatcgaagtg agtaaataaa tgggaagata gaagggaatg aaggacacgt 51 aaatgattgg gttaaacaaa tgtcaacgct aagtccattc cttaaagcca 101 aaccacaccc atttattaac ctaactgcct aaccgtcttg tcatcacctt 151 cctttcctca acttctcttt atatagaaac cctttcttct ctcgaaagcc 201 AAACATTTTT ATCAAGATAT TAACACAAGA ATACGATCAT GAGGCTCGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.006 +strand -157 : -148 GACACGTAaA AC RSP00070 Mean Expected Number 0.003 -strand -150 : -157 TACGTGTC AC RSP00114 Mean Expected Number 0.005 +strand -64 : -55 CTTGTCaTCA AC RSP00135 Mean Expected Number 0.001 +strand +2 : +13 AAcATTTTTATC AC RSP00231 Mean Expected Number 0.006 -strand -141 : -147 CCAATCA AC RSP00508 Mean Expected Number 0.001 +strand +3 : +14 aCATTTTTATCA AC RSP00892 Mean Expected Number 0.004 -strand +23 : +15 TTAATATCT AC RSP01035 Mean Expected Number 0.009 -strand -151 : -157 ACGTGTC AC RSP01086 Mean Expected Number 0.009 -strand -148 : -157 TTTACGTgTC AC RSP01261 Mean Expected Number 0.007 -strand -149 : -156 TTACGTGT Totally 10 motifs of 10 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: PBF1 |LOCUS: AT3G60820 |PROD: 20S proteasome beta subunit F1 (PBF1) |complement(22482730..22484904) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.18 1 aagggaaaat ggaagcagct tacgagtttg cgttgagaga gaaaatcgaa 51 gacgaagaag aagaagaaaa gaaaagaaag attatttctt tggaattcaa 101 agcccaaata aggcccatta taaagcctat tacagcccgt aatttccacg 151 tccaaaacgg tattgttttg agtctccgtc tttttcttgt taacaaagcc 201 AGAGCTAATA AGATCCGATT CGGAAGTTTC TTTGACATCA AAACACAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 +strand -97 : -88 CCAAATAAGG AC RSP00404 Mean Expected Number 0.006 +strand -174 : -168 TTTGCGT AC RSP01030 Mean Expected Number 0.005 -strand +31 : +24 AGAAACTT AC RSP01734 Mean Expected Number 0.006 +strand -56 : -50 TCCACGT Totally 4 motifs of 4 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATARP7 |LOCUS: AT3G60830 |PROD: actin-related protein 7 (ARP7) |22485049..22487420 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.37 C - 0.20 1 ttccgggttt gtgttttgat gtcaaagaaa cttccgaatc ggatcttatt 51 agctctggct ttgttaacaa gaaaaagacg gagactcaaa acaataccgt 101 tttggacgtg gaaattacgg gctgtaatag gctttataat gggccttatt 151 tgggctttga attccaaaga aataatcttt cttttctttt cttcttcttc 201 TTCGTCTTCG ATTTTCTCTC TCAACGCAAA CTCGTAAGCT GCTTCCATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.002 -strand -48 : -57 CCAAATAAGG AC RSP00404 Mean Expected Number 0.006 -strand +30 : +24 TTTGCGT AC RSP01030 Mean Expected Number 0.005 +strand -175 : -168 AGAAACTT AC RSP01734 Mean Expected Number 0.007 -strand -89 : -95 TCCACGT Totally 4 motifs of 4 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G60880 |PROD: the same as GENE |22505827..22507672 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +234 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.27 C - 0.24 1 attggagatg ctctaagaac ttaaaaaaat tctcctaaac aaaaatatga 51 atcgaaatcc tatcagaaaa agtctagccc ggaaatctct ggacgtgtgg 101 gccgaatcta aaccctctta aagcCCAATt tgattaggat caagagaaag 151 gggaagccct aaagattggc gtcctgcgtt catcatcacc ttctctcccg 201 CCGCTTTCTT TCATCTTTAC AAAACCGATT ACTTTTGTCG GAATCTGACG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.001 -strand -102 : -109 CACACGTC AC RSP00989 Mean Expected Number 0.001 +strand -7 : +2 TCTCCCGCC Totally 2 motifs of 2 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 910. Group TF: E2F/DP /AC: RSP00989//OS: Zea mays /GENE: RBR3/RE: E2F/DP IV /TF: E2F/DP ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: FLA10 |LOCUS: AT3G60900 |PROD: fasciclin-like arabinogalactan-protein (FLA10) |complement(22510335..22512214) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +398 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.39 C - 0.15 1 gatttttaca tgacagtagt aaactacgta ttttgatttg tcgtttttat 51 aaaaaataat aatttcttta tcagtgctgt gtcgggcaat tagaaccttc 101 tttccatttc taaaagatgt taccaactAT TGAccaagta tttaaaactg 151 ataacgacac ttatttatga gtctactaag tactaacgat attactagtt 201 GTCAAGTAAA AATATCTAAA TCCTTTTTAT CTGAGTGCCT TTTACAAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00020 Mean Expected Number 0.001 +strand +1 : +12 GTCaAGTAAAAA AC RSP01314 Mean Expected Number 0.000 +strand -144 : -129 TAATAATTTCTtTATC Totally 2 motifs of 2 different REs have been found Description of REs found 19. Group TF: GT-1 /AC: RSP00020//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box6 /TF: GT-1 1207. Group RE: Regulatory Motif 4 /AC: RSP01314//OS: Glycine max /GENE: 11S A2B1a/RE: Regulatory Motif 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: thioesterase family protein |LOCUS: AT3G61200 |PROD: the same as GENE |complement(22668430..22669365) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.48 G - 0.12 T - 0.28 C - 0.12 1 attagttaca cttacccaaa taacactatt taataaatct aattcaaaaa 51 tttaaaatag tgaataaact aattgatcgg cataaaaaaa attgtggcta 101 tagttttgta cacttcacct aaaaaagttc ttacagtttt ttactgtcta 151 aaaataggaa aaaaataatt acaaaagaga gaaaagtcaa cattacacaa 201 AAAAAAAATC AATTTGGAAA AAAATCAGAG TAGGTTAAAA ATGAATTGGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.007 -strand -161 : -172 AGAtTTATTAAA AC RSP00596 Mean Expected Number 0.004 -strand -103 : -108 GCCACA AC RSP01614 Mean Expected Number 0.001 +strand -82 : -70 CTAAAAAAGTTCT Totally 3 motifs of 3 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 1434. Group TF: GmDof4 /AC: RSP01614//OS: Glycine max /GENE: Synthetic OLIGO/RE: accD P-box /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: |LOCUS: AT3G61260 |PROD: the same as GENE |complement(22686226..22687763) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.37 C - 0.18 1 tggcatatgt ttaaccgcat tacctgtctg tcggcaagct gaatttttgt 51 gttcggctgc atcgcagttc acgtggatac acaacaaatg gatttataac 101 cgtaggatct gatgccttta tatatcaacg gataataaaa taaggtattt 151 ttaaccccaa aaaaacgcgg ctaatacgta taaacatctt tctgttgctt 201 GGAAATAATA TCTTCAATTT TTCATATTTC GTTTTTAATT TGGTTTTCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.005 +strand -69 : -61 ATAATAAAA AC RSP00640 Mean Expected Number 0.001 +strand -132 : -125 TCACGTGG AC RSP00746 Mean Expected Number 0.001 -strand -41 : -52 tTGGGGTTAAAA AC RSP00792 Mean Expected Number 0.008 -strand +2 : -8 CCAAGCAACA AC RSP01734 Mean Expected Number 0.006 -strand -124 : -130 TCCACGT Totally 5 motifs of 5 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ASK21 |LOCUS: AT3G61415 |PROD: SKP1 family protein |complement(22733685..22737383) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +831 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.13 T - 0.35 C - 0.31 1 ctcaccgact tcatcagcca ccaacgaacc ctgagattct attttcatca 51 tctcgagcca tgagccatcg cggctcgtac acgtggcaat tataacccac 101 tccattttct ctcttgtctt tttttttttt ttgcgcgaga aaaacttaat 151 tattaaaaag aaatcccaaa atattattaa gcccttcttt ctctctctta 201 TCCGCTCCTG TCTCTCTCTC TCTCTTGGTC TGTTTCTGCC GCCGCCGTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -122 : -114 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -121 : -114 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -123 : -114 tACACGTGGC AC RSP00212 Mean Expected Number 0.005 -strand -46 : -54 TAATAATTA AC RSP00524 Mean Expected Number 0.006 +strand -122 : -116 ACACGTG AC RSP00682 Mean Expected Number 0.003 -strand -114 : -123 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -123 : -114 TACACGTGGC AC RSP01034 Mean Expected Number 0.004 +strand -120 : -114 ACGTGGC AC RSP01092 Mean Expected Number 0.005 -strand -159 : -169 ATAGAATCTcA AC RSP01255 Mean Expected Number 0.001 +strand -122 : -115 ACACGTGG AC RSP01593 Mean Expected Number 0.000 +strand -123 : -112 TACACGTGGCAa Totally 11 motifs of 11 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: LHCA2 |LOCUS: AT3G61470 |PROD: chlorophyll A-B binding protein (LHCA2) |22756635..22758256 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.32 C - 0.19 1 cccagtcact tggaatacta gcttatattt tctttcttta aaactcagtt 51 aatagttatg ttcaaataga gagaaaatct aagatgtggt gggacgaagt 101 tgccacgtgC CAATgagttg accaatgagg aaactcagtg cgttatccgt 151 agggataatc agataagcag aatctgattt tgtcaccaga gtgcttttat 201 AGATTACACA ACACACGTTC GTTTCTTTCT TCTTCTAACA CACTCTGAGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -99 : -90 GCCACGTGcC AC RSP00073 Mean Expected Number 0.002 -strand -90 : -99 GgCACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -92 : -99 CACGTGGC AC RSP00183 Mean Expected Number 0.000 +strand -99 : -90 GCCACGTGCC AC RSP00204 Mean Expected Number 0.002 -strand -90 : -99 GgCACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -89 : -100 TGgCACGTGGCA AC RSP00467 Mean Expected Number 0.003 -strand -77 : -86 TGGTCAAcTC AC RSP00468 Mean Expected Number 0.001 -strand -76 : -86 TTGGTCAAcTC AC RSP00847 Mean Expected Number 0.004 -strand -109 : -118 CCACCaCATC AC RSP00860 Mean Expected Number 0.003 -strand +30 : +22 AGAAAGAAA AC RSP00860 Mean Expected Number 0.003 -strand -164 : -172 AGAAAGAAA AC RSP00936 Mean Expected Number 0.000 +strand -100 : -89 TGCCACGTGcCA AC RSP00985 Mean Expected Number 0.009 +strand -147 : -138 AGTTAtGTTC AC RSP01034 Mean Expected Number 0.006 -strand -93 : -99 ACGTGGC AC RSP01482 Mean Expected Number 0.001 +strand -86 : -76 GAgTTGACCAA Totally 15 motifs of 13 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 177. Group TF: G-box binding TF /AC: RSP00183//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 10 /TF: G-box binding TF 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein, contains Pfam domain |LOCUS: AT3G61770 |PROD: the same as GENE |22875518..22877380 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.37 C - 0.21 1 ttgagcccag ttatcctctt ttggacacat ttttggtata ttcgagtcac 51 gatactcgaa tggtatttcc gttataattt acgaaaacaa tgtctcttct 101 tttctctaca accacacgat ttcgatgtta attaccaaaa aagtgtgttt 151 aatttagcta aactaattgt tttcgttgat taggcccagt tgggttgaag 201 AAAATCTCCA ATCTTTCTTC GCCAAGTCTC CCACAACACT TTGTGTTCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.009 +strand +28 : +34 CTCCCAC AC RSP00332 Mean Expected Number 0.008 +strand -141 : -134 ATGGTATT AC RSP00441 Mean Expected Number 0.004 +strand -64 : -55 AAaAAAGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: seven in absentia (SINA) family protein |LOCUS: AT3G61790 |PROD: the same as GENE |complement(22882768..22884665) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.38 C - 0.21 1 gagagaggat atactgtacg tatattatta gaatatgatt atttttcccc 51 tatccagtaa attcttctga atctcttata attcaatttg tttccaaata 101 acattctctc tttaacacag ccgcctttgt gaccgtccga tcttaaatca 151 gcgtttccgg ttcatttgac ggcaactatc tctctctctc tctctagaga 201 ATTGATGAAG AAGAGCATCT ATCTTTTTTG TTTTTGAAAA TTAACAACAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.002 +strand -82 : -76 AGCCGCC AC RSP00438 Mean Expected Number 0.008 -strand -76 : -81 GGCGGC AC RSP00807 Mean Expected Number 0.008 +strand -81 : -76 GCCGCC AC RSP00864 Mean Expected Number 0.003 -strand -6 : -14 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -8 : -16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -10 : -18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -12 : -20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -14 : -22 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -7 : -23 GAGAGAGAGAGAGAGAt AC RSP01505 Mean Expected Number 0.000 -strand -59 : -67 GATCGGACG Totally 10 motifs of 6 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CYP78A9 |LOCUS: AT3G61880 |PROD: cytochrome P450, putative |complement(22916843..22918933) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.09 T - 0.33 C - 0.18 1 taaaagtaca atattaaggt aagaagaatg aaatacacac aaaaaatata 51 gtgtttaata taaaaaacaa catttccttc actctttcag ttatataata 101 ataataccta ttataaatga aatataatat agtttttgaa ctaattacaa 151 aaactaacaa gaggggcttc taatgttttt ttctatataa atacctgaag 201 CCTTTCGTCT TAAACCCCAC AGCAAAAAGC CACTCTCCTT TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.004 +strand -15 : -4 TATAAATACCtG AC RSP00864 Mean Expected Number 0.001 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT3G61950 |PROD: the same as GENE |22950521..22952424 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.11 T - 0.33 C - 0.28 1 ttcaagacaa aactgcttcc accaataata tctctctctc atctgctctg 51 ctcagcctca ccaactctta cagtacccaa atacatctat cttattacct 101 ctctgttttt tacagctcct ctgtttccac tctacTCAAT agctttacta 151 aagactcact gttctatata aagctaacag ttacaagtcc ataaaagctc 201 AGAATCAGAA GAGAGTACAT GAGTTTCCTC TTCTGCCTCT TTGGTGATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.003 -strand -3 : -12 GCTTTTATGG AC RSP00864 Mean Expected Number 0.006 -strand -162 : -170 AGAGAGAGA AC RSP00950 Mean Expected Number 0.007 +strand -144 : -134 CTCACCAACtC Totally 3 motifs of 3 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNA-binding protein, putative |LOCUS: AT3G61970 |PROD: the same as GENE |22962438..22963826 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +366 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.30 C - 0.24 1 ttattttgta aatcaaaata tattagggaa aagaagaaaa gggccaaata 51 aatgtaaatg aatatgtcca tatagagaaa aatgaaacga ggatggtaga 101 aaaaggacaa gaagctcaca tgaacagaac cagATTGTtc atgggccccc 151 ctctcacctc tctcttcttt cctctcgacc catatctcta tcaatcttat 201 ATTACATGAG CTCTCTCTCT CTCTCCTTCT CCTTCTCTCT TCTCCTTCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00155 Mean Expected Number 0.001 -strand -3 : -15 AAGATTGATaGAG AC RSP00254 Mean Expected Number 0.007 -strand -159 : -165 CCTTTTC AC RSP00628 Mean Expected Number 0.004 -strand -62 : -69 AACAATCT AC RSP00653 Mean Expected Number 0.004 +strand +17 : +27 cTCTCTCTCCT AC RSP00653 Mean Expected Number 0.004 +strand +33 : +43 TTCTCTCTtCT AC RSP00864 Mean Expected Number 0.002 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +22 : +14 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +20 : +12 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +26 : +18 GGAGAGAGA AC RSP00891 Mean Expected Number 0.007 +strand -186 : -178 AAAATATAT Totally 10 motifs of 7 different REs have been found Description of REs found 150. Group RE: 13 bp CytRE /AC: RSP00155//OS: Cucumis sativus /GENE: hpr-A/RE: 13 bp CytRE /TF: unknown 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: serine protease inhibitor |LOCUS: AT3G61980 |PROD: the same as GENE |complement(22967114..22967858) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.26 C - 0.22 1 ttacgaccca ataaaaaaaa aattgataaa ccaaaaaccc aggtttgctg 51 aacatgcatc aatacgccgt agaaatacac gacatgacgt ttagttgttt 101 aagtatgaac gacatgacgt ttgatggttt aaacaaataa ctgcgcgtag 151 tttctgtggt ttgctttact cggtgcgtga accagctgta ccaccaattc 201 AAACAACACG GTTACGCAAA CTCTCTCTGA GAAAATCCCC AAATCTCATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.008 -strand -62 : -72 TATTTGtTTAA AC RSP00447 Mean Expected Number 0.002 -strand -31 : -40 AGtAAAGCAA AC RSP00940 Mean Expected Number 0.009 -strand -127 : -136 TTCTACGGcG Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: O-methyltransferase family 3 protein |LOCUS: AT3G61990 |PROD: the same as GENE |complement(22968048..22969970) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.37 C - 0.19 1 ttttgtgatc atcttaattt ctgaaaaggg tcccaaagtc ctaacaaagc 51 tcacagctta atttctcatt gttgtttcta ctatagtatt tttttaatta 101 cttttaagat aaaatttgtg tagaataaga cgttgcaact tttcaaaagc 151 caccgcctat tatttaaatc atattctctg agcatagagc cgaagtcctc 201 ACCAATCACC ACTCACATGT TATCAATAAT TGCTTATAAG AATTTGTATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.005 -strand -172 : -178 CCTTTTC AC RSP00539 Mean Expected Number 0.002 -strand -15 : -43 TATGCT-- ** bp --TAATA AC RSP00819 Mean Expected Number 0.001 -strand -65 : -74 GCaACGTCTT AC RSP01060 Mean Expected Number 0.006 +strand +24 : +32 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand +32 : +24 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand +24 : +32 CAATAATTG Totally 6 motifs of 5 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 515. Group RE: UN E2 /AC: RSP00539//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: UN E2 /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G62050 |PROD: the same as GENE |22989221..22989994 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.27 C - 0.23 1 tataatgagc ctgagaatga gaattgggct atgatgtggc ccaagtcgtg 51 cttttcctaa cttgacaaga gaagttacaa aagtacccac agctacttgg 101 ttgtgttatg tgctttagta ggggtagaat cgaaattagg aaaccacctg 151 agaccgagaa gaaacacaca attgctttgc tctctcgtcc gcagccacag 201 AGGTTGAACC CTAGATTTAC TCACCAATCT CTCATTCTCT CAATCAATCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.004 -strand -20 : -29 AGCAAAGCAA AC RSP01192 Mean Expected Number 0.003 -strand +14 : +5 CTAGGGTTCA AC RSP01602 Mean Expected Number 0.005 +strand +38 : +45 TCTCAATC Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: VGDH2 |LOCUS: AT3G62170 |PROD: pectinesterase family protein |complement(23027198..23029484) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.30 C - 0.25 1 tatattttta gtaatcgaac tcttgatcag gacataatca aatcatcttg 51 tggtgaccaa tttttagtct catagccaat atttgattag agaattttta 101 gccattcaac gaccttaaat ctctccctag ctccatgcaa accctaattt 151 tagaaactac aaatcctata agaatgtctc cacaatgcac cacaatctct 201 ACCAGCCCCA TTAATAAACC ACCGGGCTCT GTTTCAATAA AAAAAATCCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.005 -strand -54 : -62 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -62 : -54 AAACCCTAA AC RSP01000 Mean Expected Number 0.010 +strand -16 : -7 ATGCaCCACA AC RSP01642 Mean Expected Number 0.007 +strand -29 : -20 GAATGTCTCC Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: protein phosphatase 2C, putative / PP2C, putative |LOCUS: AT3G62260 |PROD: the same as GENE |complement(23049265..23051545) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +179 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.27 C - 0.23 1 cataattagg gcttagtctt agccgtgtgt aatccacaaa ctaaacagag 51 atcataatct acataagcaa ccgactcgcc acagatgatg gccacgtgtc 101 aactgaattt taccggttac ccagtcaccc ataatcgagt ctttttcttc 151 ttatatataa tcagagagaa aaagcccacg cggctcagaa atttcgtcca 201 CGAGAGGAAT AAATTCACAC GCGAACTTCG ATAGTTGTTA ATTTTCGTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -102 : -110 ACACGTGGC AC RSP00056 Mean Expected Number 0.005 +strand -110 : -101 GCCACgTGTC AC RSP00063 Mean Expected Number 0.002 -strand -17 : -26 GCCGCGTGGg AC RSP00073 Mean Expected Number 0.002 +strand -110 : -101 GCCACGTGtC AC RSP00073 Mean Expected Number 0.002 -strand -101 : -110 GaCACGTGGC AC RSP00153 Mean Expected Number 0.002 -strand -102 : -111 aCACGTGGCC AC RSP00175 Mean Expected Number 0.001 -strand -103 : -110 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -101 : -110 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -100 : -111 TGACACGTGGCc AC RSP00340 Mean Expected Number 0.005 +strand -110 : -101 gCCACGTGTC AC RSP00523 Mean Expected Number 0.010 +strand +17 : +23 ACACGCG AC RSP00524 Mean Expected Number 0.010 -strand -102 : -108 ACACGTG AC RSP00936 Mean Expected Number 0.000 +strand -111 : -100 gGCCACGTGTCA AC RSP01034 Mean Expected Number 0.008 -strand -104 : -110 ACGTGGC AC RSP01035 Mean Expected Number 0.010 +strand -107 : -101 ACGTGTC AC RSP01255 Mean Expected Number 0.002 -strand -102 : -109 ACACGTGG Totally 16 motifs of 15 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G62390 |PROD: the same as GENE |complement(23097996..23100166) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.35 C - 0.20 1 gttccgttaa ttattgtaaa attcatgagc tcacgagttt gtaagaacgt 51 cattatcatt tcttcaccga atctctcctc tataccccac taattcaacc 101 acctttgtcg actccaaaat tTCAATcctt ttctcaaaca gttccatttt 151 tcgatttcaa atttctctga ttacagataa ttatgaaact gttttttctt 201 AACTAACTTA TAACAGTTAC AGAGAAAAAA TAAATAAAGA GATAGAAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.009 -strand -83 : -90 TTTGGAGT AC RSP00445 Mean Expected Number 0.008 +strand +33 : +42 AAtAAAGAGA AC RSP00750 Mean Expected Number 0.005 +strand -190 : -179 TTATTGTAAAAT AC RSP00920 Mean Expected Number 0.003 -strand +11 : -1 AtAAGTTAGTTA AC RSP01654 Mean Expected Number 0.007 -strand -147 : -156 AATGACGTTC AC RSP01755 Mean Expected Number 0.003 +strand -105 : -98 CAACCACC Totally 6 motifs of 6 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: CP12-2 |LOCUS: AT3G62410 |PROD: CP12 domain-containing protein |23101920..23102538 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.20 1 atcttttttg gataaaatac gcaacaggca cttgtatctt agaaaacggc 51 ttggatggct gcaaattttc aacatcgtac tgcttcataa acgatatcaa 101 atacgtggaa cttaATTGTt ggttaataga ggataagaaa tggggttcac 151 agaattaaat tcacgcacac ttcatatatc ttgttccctc ccaattatct 201 GAACTATCTT CTTTTATCAA AAACTATATT CACAGGCTGC CGTGTACCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01274 Mean Expected Number 0.002 -strand -92 : -101 TCCACGTATt AC RSP01734 Mean Expected Number 0.006 -strand -92 : -98 TCCACGT Totally 2 motifs of 2 different REs have been found Description of REs found 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: DNAJ heat shock family protein |LOCUS: AT3G62600 |PROD: the same as GENE |complement(23161766..23164486) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.30 C - 0.19 1 tcattattaa tgcgccttgt atagattata tgagtataac gacgtcgtac 51 tcattaaagt cgacgaaaag aacagtcagc gattcgacgt tggtttatcc 101 acgtggctaa tatttattgg ttacgatcgt cagagactta atcctgATTG 151 Gttaagcatt gcagtgtaca cgtaacccga ccacgaggct cgagttttgg 201 AATCGTTTCC ACGAAAACAA GTAGAGAGAG TGATTCGAGT TTTCCAATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -103 : -94 tCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -94 : -103 GCCACGTGGa AC RSP00153 Mean Expected Number 0.002 +strand -102 : -93 CCACGTGGCt AC RSP00175 Mean Expected Number 0.001 +strand -101 : -94 CACGTGGC AC RSP00189 Mean Expected Number 0.002 +strand -103 : -94 TCCACGTgGC AC RSP00340 Mean Expected Number 0.004 +strand -103 : -94 TCCACGTGgC AC RSP00682 Mean Expected Number 0.002 -strand -94 : -103 GCCACGTGGA AC RSP00683 Mean Expected Number 0.004 -strand -94 : -103 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -102 : -95 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -95 : -102 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -103 : -94 TCCACGTGGC AC RSP01034 Mean Expected Number 0.008 +strand -100 : -94 ACGTGGC AC RSP01261 Mean Expected Number 0.004 -strand -26 : -33 TTACGTGT AC RSP01509 Mean Expected Number 0.001 -strand -49 : -57 ACCAATCAG AC RSP01722 Mean Expected Number 0.000 +strand -104 : -93 ATCCACGTGgCT AC RSP01734 Mean Expected Number 0.009 +strand -103 : -97 TCCACGT Totally 16 motifs of 14 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G62640 |PROD: the same as GENE |complement(23177265..23177876) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.35 C - 0.22 1 aaaatacagt aaaatttcga aaatattaac aacatggatg atggaacttt 51 ggttgtcatc attacagaaa ataattcctt actaatctat tttttattta 101 cttaaattaa ccttcattca aaaaaacgaa aaaacgcctc ATTGAtcgca 151 tgacctctca cctctttcct tattagtctc acattcccaa atcaagaatc 201 ATTTGATTTC GTTCCTTTTA CCGGTGCTTC TTTCCTATTC GGACGAAGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00416 Mean Expected Number 0.004 -strand -161 : -167 CATCCAT AC RSP00613 Mean Expected Number 0.007 +strand -10 : -3 ATCAAGAA AC RSP01470 Mean Expected Number 0.007 -strand -160 : -169 TCATcCATGT Totally 3 motifs of 3 different REs have been found Description of REs found 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: NADH-ubiquinone oxidoreductase-related |LOCUS: AT3G62790 |PROD: the same as GENE |complement(23234059..23235283) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.29 C - 0.17 1 gactaaattt tattaaacta ttaaaagcct agtaacaaag taacaacaat 51 tcctgcttaa tgttaaggaa cgggtaaaat tctggtaata attaccttca 101 cactaacgta attacaggaA TTGAtatctc aaagttgggc ccatgaagtg 151 tttacgttaa agcccataat ataaaggcac atttatttcg ggttctaatt 201 GGATTAACCT GAATAGATCG GATCCTCGGA AATCAGGCGA AGAAGACGAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00858 Mean Expected Number 0.008 -strand -105 : -112 GGTAATTA AC RSP01094 Mean Expected Number 0.004 +strand -5 : +7 TAATTGGATtAA AC RSP01679 Mean Expected Number 0.001 -strand -17 : -28 AAAtGTGCCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1497. Group RE: JRE (Qualt. Seq.) /AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Qualt. Seq.) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: complex 1 family protein / LVR family protein |LOCUS: AT3G62810 |PROD: the same as GENE |23238683..23239341 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.25 T - 0.23 C - 0.16 1 gattgaaact catcgagaaa ccataataag tatacacatg taaattgtct 51 caaggatacg aaagattcgg gttaacccag cttgaacggg tatgatccga 101 aataatccat taatgggcca aaATTGGgct tattcatgaa agttgtaaag 151 gcccaatgaa actcgaagtt gatcagaagg ttgtcggcga ccaaatttct 201 AAATCCAATT TTGGGAGGGA GACGACGGCG GAGGTTGAAA GGGGAAAGAG 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: 60S ribosomal protein L7A (RPL7aB) |LOCUS: AT3G62870 |PROD: the same as GENE |complement(23253640..23255328) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.32 C - 0.14 1 aaaaatatcg ttgatttaat aaaaaaatat agaaagtaag atataaagat 51 catgaatata taattttctt gacgaaaaat tattttcttg atattcagaa 101 aatctatATT GAgagagcaa tacgtgtcca aaaacgtaat tttctcatct 151 gggcttctga ggaaaaaaaa tatttgtatc atttgggctt cagtgtcttt 201 ATAAATAGTG AAAACACAAA ACCCTAAGAG TCGCTCTTGC TCTCAGCCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.001 +strand -80 : -73 TACGTGTC AC RSP00279 Mean Expected Number 0.002 -strand +27 : +19 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +19 : +27 AAACCCTAA AC RSP00613 Mean Expected Number 0.007 -strand -109 : -116 ATCAAGAA AC RSP01035 Mean Expected Number 0.004 +strand -79 : -73 ACGTGTC AC RSP01233 Mean Expected Number 0.008 -strand +41 : +35 AGCAAGA AC RSP01288 Mean Expected Number 0.004 +strand -81 : -74 ATACGTGT AC RSP01303 Mean Expected Number 0.004 +strand +18 : +27 aAAACCCTAA AC RSP01702 Mean Expected Number 0.008 -strand -73 : -82 gACACGTATT Totally 9 motifs of 9 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G63050 |PROD: the same as GENE |complement(23308866..23309364) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.14 T - 0.20 C - 0.18 1 aaaaagcgac caaaaaacaa aaaaagagta ttatgaaaga agaaactaga 51 taaattctgt tttccttaga tatagaaaag acaaagacaa tcacatttcc 101 ccccaaagcg tagaatcaaa gcaaaGCAAT cggaaaaaga aatccataat 151 cccactaatt ttttcatata ataataaacc aacaccataa tcagacattc 201 ATGTAAACAA ATAGACGATG CAGAGAGCAA ATGATGATGA CAACAAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.008 -strand +47 : +38 CTTGTtGTCA AC RSP00447 Mean Expected Number 0.002 +strand -81 : -72 AGCAAAGCAA AC RSP00456 Mean Expected Number 0.010 +strand -143 : -138 TGTTTT AC RSP01020 Mean Expected Number 0.006 -strand -34 : -40 ATGAAAA AC RSP01093 Mean Expected Number 0.006 +strand -85 : -75 TCaAAGCAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 434. Group RE: Motif II /AC: RSP00456//OS: Pisum sativum /GENE: PSPAL2/RE: Motif II /TF: unknown 945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: ATGPX5 |LOCUS: AT3G63080 |PROD: glutathione peroxidase, putative |23320712..23322361 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +424 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.31 T - 0.19 C - 0.12 1 tgtggatatg cagatccagg gacgtggcat caaaggtgag tgggagacaa 51 gagatgaaga agggcaaagg tgcagtctgc tctaaatgaa agacatttgg 101 gctatagtca tggaaaagaa gaaataggga gaaacaagtg taggttggaa 151 agacctgggc cacttgagag agatgttaat atacaaaaga aaaaaggcac 201 AGTTGGTGTG TGTACATATG ACCAAAAACG TCGTGGAGAA GGCTAAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.002 +strand -41 : -35 CCACTTG AC RSP00821 Mean Expected Number 0.005 -strand -173 : -182 GCCACGTCCc AC RSP00840 Mean Expected Number 0.009 +strand -42 : -37 GCCACT AC RSP00910 Mean Expected Number 0.000 -strand -170 : -182 GATGCCACGTcCC AC RSP01034 Mean Expected Number 0.008 +strand -179 : -173 ACGTGGC Totally 5 motifs of 5 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 785. Group RE: CAT /AC: RSP00840//OS: Arabidopsis thaliana /GENE: H4A748/RE: CAT /TF: unknown 841. Group RE: A1 /Group TF: HvABI5 /AC: RSP00910//OS: Hordeum vulgare /GENE: HvABI5/RE: A1 /TF: HvABI5 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: expressed protein |LOCUS: AT3G63170 |PROD: the same as GENE |23345327..23347732 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +323 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.32 C - 0.18 1 ttggtgagaa cctttcctaa atttgggcct aatatgggct gaattgggtt 51 tcttactaga aaacaaatct tggtgtcgtg aataagacaa gtttggatga 101 ttccttctaa tatctaaatg aatcTCAATc gaccaaggaa gataagacgc 151 aaatatagtg gacctctcat catgacacac acatccttta attggatttt 201 GATTAAAATA TTCTATTCAT TCATCTCCCC AATATTTTTC CAGAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.003 +strand -62 : -54 AAGATAAGA AC RSP00872 Mean Expected Number 0.010 -strand -20 : -29 TGTGTGtCAT AC RSP01602 Mean Expected Number 0.005 +strand -78 : -71 TCTCAATC Totally 3 motifs of 3 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: APG1 |LOCUS: AT3G63410 |PROD: chloroplast inner envelope membrane protein |complement(23426190..23428093) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.32 C - 0.22 1 ttgaattgtc gtcgaagtct ctctctctct gactcaaatc gacttttccc 51 ttccatttgc agaaaaatgc caaaacgccc aatactatta tttgggccaa 101 ttcttgcaaa tgagcccatg ggctcaacaa agggatatgt gttgtcgcaa 151 caaacaacgt gaccgtacat aaacatgtgg ttggagtcag tactgactct 201 GTTAGAGTTA GAGGGTTTAG TCACACTCTC ATTCTCGTTT GTGTTTTTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.010 -strand +4 : -6 TAACAGAGTC AC RSP00734 Mean Expected Number 0.002 +strand -130 : -123 CAAAACGC AC RSP00864 Mean Expected Number 0.002 -strand -171 : -179 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -173 : -181 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -175 : -183 AGAGAGAGA Totally 5 motifs of 3 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: SCPL40 |LOCUS: AT3G63470 |PROD: serine carboxypeptidase, putative |23449449..23452035 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.10 T - 0.27 C - 0.16 1 aaaaataaaa taaataaatt aatctttaat ctgaatctgt tatcaaaata 51 attgtactac tttaaaaatg aaaaacaaaa acaatagttg tcaaaaaaaa 101 aaaaaaaaaa aaaaggaACA ATcattcgta tggttggagg ttttgaccca 151 caaaaaagaa gaagttgttt aaagatgcaa acccacacac tcgtttcttc 201 ATTTAACTGT CTCTTCTTCA AAACCAAAAC CAAAACCAAA ACCTTCTATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.006 -strand -53 : -59 GGTCAAA AC RSP00455 Mean Expected Number 0.008 -strand -68 : -73 CCATAC AC RSP00680 Mean Expected Number 0.003 -strand -159 : -168 TAACAGAtTC AC RSP01014 Mean Expected Number 0.003 -strand +5 : -5 tAAATGAAGA AC RSP01082 Mean Expected Number 0.000 -strand -59 : -70 AAcCTCCAACCA AC RSP01104 Mean Expected Number 0.000 -strand -58 : -65 AAACCTCC Totally 6 motifs of 6 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 433. Group RE: Motif I /AC: RSP00455//OS: Pisum sativum /GENE: PSPAL2/RE: Motif I /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1000. Group TF: DcMYB1 /AC: RSP01082//OS: Daucus carota /GENE: DcPAL1/RE: box-L4 /TF: DcMYB1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: kinesin heavy chain, putative, kinesin heavy chain |LOCUS: AT3G63480 |PROD: the same as GENE |complement(23450847..23454981) |SUPPORT | 16 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.20 G - 0.14 T - 0.33 C - 0.33 1 ccactccacg cccaagggga taacaacacc ccctattctt tctaagctat 51 tattctctgc gtggcgggca ccttagctac cgtgttccta gtgacacgtg 101 tcttcttatg gaccattaga tcttttaaca acccacacgc gtatcctcgt 151 gacctcttct ccttctcctt cttcttcttc cttctctttt ctcaaaaatc 201 AGATTTCGAG TTTCTTCTTT CCCGCCCGTA AGAGAAACCC TACTCTGACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00018 Mean Expected Number 0.008 -strand -2 : -8 ATTTTTG AC RSP00050 Mean Expected Number 0.001 +strand -64 : -53 ACGCGTaTCCTC AC RSP00143 Mean Expected Number 0.003 +strand -108 : -99 GACaCGTGTC AC RSP00143 Mean Expected Number 0.004 -strand -99 : -108 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -108 : -99 GACACGTGtC AC RSP00204 Mean Expected Number 0.004 -strand -99 : -108 GACACGTGtC AC RSP00523 Mean Expected Number 0.007 +strand -66 : -60 ACACGCG AC RSP00524 Mean Expected Number 0.007 +strand -107 : -101 ACACGTG AC RSP00735 Mean Expected Number 0.002 +strand -7 : +1 AAAAATCA AC RSP00889 Mean Expected Number 0.003 -strand -137 : -143 CCACGCA AC RSP01035 Mean Expected Number 0.007 -strand -102 : -108 ACGTGTC AC RSP01115 Mean Expected Number 0.008 +strand -8 : -2 CAAAAAT AC RSP01256 Mean Expected Number 0.002 +strand -107 : -100 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -100 : -107 ACACGTGT Totally 14 motifs of 11 different REs have been found Description of REs found 17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4 49. Group RE: Ce3 /AC: RSP00050//OS: Hordeum vulgare /GENE: HVA1 gene/RE: Ce3 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 3: GENE: nitrogen regulation family protein |LOCUS: AT3G63510 |PROD: the same as GENE |23461530..23463769 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.34 C - 0.24 1 tgactcttat cgcgtgtcgt cgtatcctcc accactagca ttaaataatt 51 agtattaaac taaagacact tgttgctggg ctctatcagt ggccctttcc 101 tactccatca tagatataaa atgcgtaaag taaggcccat cacaactact 151 tatatacttt aaacattatt aatgttccct tactgttatg ctagttccaa 201 ACAAACGGTT TCATTATCTT CTCCAATTCC AAATGTGGTG TCTACCATCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.005 -strand -149 : -159 CTAATTaTTTA AC RSP00523 Mean Expected Number 0.004 -strand -184 : -190 ACACGCG AC RSP00709 Mean Expected Number 0.005 -strand -150 : -158 TAATTATTT AC RSP00792 Mean Expected Number 0.003 -strand -121 : -130 CCcAGCAACA Totally 4 motifs of 4 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATRPS13A |LOCUS: AT4G00100 |PROD: 40S ribosomal protein S13 (RPS13A) |37096..38312 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.19 1 atcagaaaaa tgatagtcta catacatatg gtaatttggt aaataataca 51 aaaagaatct acacaaccaa gtgaaaaatc aaaaatgtgt ctggtcgtgg 101 actccgatgg gctttttgag gcaaATTGAa aactgggcca gaaatatgaa 151 aggcccacgt aagtcccgaa tataacctaa aaagcacact ctctaataac 201 AGCCAGAATT AGGGTTTCTC TTTGTCTTCA GCAGTCAGTG CGCATCCGTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00247 Mean Expected Number 0.005 +strand -47 : -38 cCCACGTAAG AC RSP00279 Mean Expected Number 0.001 +strand +9 : +17 TTAGGGTTT AC RSP00295 Mean Expected Number 0.000 +strand -67 : -44 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -44 : -67 TGGGCC-- ** bp --GGCCCA AC RSP00369 Mean Expected Number 0.001 -strand +17 : +9 AAACCCTAA AC RSP00887 Mean Expected Number 0.004 +strand -148 : -140 AAGAATCTA AC RSP01303 Mean Expected Number 0.002 -strand +18 : +9 gAAACCCTAA Totally 7 motifs of 6 different REs have been found Description of REs found 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: F-box family protein |LOCUS: AT4G00160 |PROD: the same as GENE |63410..65477 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.33 C - 0.16 1 gatcatcgga ttaggtcatt catcggatta ggtcatttag gggtttactt 51 cttagagatg gttaacattt tggtattaat aagtaaaccg atcggattcg 101 gttcgaattt aaacaaaacc gagatATTGA atgagaagcc ctagtcttat 151 cacattcttc tactcgttga aatgcgaata gtcattaggg attcagtttt 201 GTTGAAATGC GATTTTAGCA CTGGAAAAAC ATAAGCCTGA AGGATTTCAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.008 +strand -83 : -77 ACCGAGA AC RSP01475 Mean Expected Number 0.002 -strand -128 : -136 CCAAAATGT Totally 2 motifs of 2 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G00170 |PROD: the same as GENE |complement(70491..72196) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.36 C - 0.20 1 caatagtata atggatcctt tttgttgggc ttatttcagt cagggaacaa 51 tagccttgat tttgttgggc taaccgctaa cgcattaaaa aaatcacggT 101 CAATcggtga tcgtcaaatc tagttacgtg gcatttaata tttaaaacta 151 caaaatttac cagtcttggc tcaaaaaaat atttattcac ttttcttctt 201 CTCTGACCAA AATCAAAATT TGTTCGATTC TCATTCTTCT TCTCACAGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -76 : -69 TACGTGGC AC RSP00247 Mean Expected Number 0.003 -strand -69 : -78 GCCACGTAAc AC RSP00743 Mean Expected Number 0.001 -strand -36 : -47 GAcTGGTAAATT AC RSP01034 Mean Expected Number 0.003 +strand -75 : -69 ACGTGGC AC RSP01678 Mean Expected Number 0.005 +strand -29 : -18 CAAaAAAATATT Totally 5 motifs of 5 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 705. Group RE: box 3 /Group TF: GT-1 /AC: RSP00743//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 3 /TF: GT-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RHB1A |LOCUS: AT4G00335 |PROD: |145928..148334 |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +938 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.28 C - 0.16 1 gatagcgaca gagggtttga ccttctgtag aatggaccat ggtctaaaat 51 gtttatagcc catgtttcag aaaacaaaag cccaatgatt agcccgtatc 101 cttaaccgac gtcgtactat ttaaaaggta tttaatgaga tttgagaata 151 attaggcaaa ctaaataaag taaagtagga ttacagtata attacttact 201 ATGATGAGGT TATTCGACTA GAGAAAAGGA GCTCTGTGTG TCGAAACCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01190 Mean Expected Number 0.001 -strand -159 : -168 CCATGGTCCA AC RSP01703 Mean Expected Number 0.001 +strand -95 : -86 CCGACGTCGT Totally 2 motifs of 2 different REs have been found Description of REs found 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G00585 |PROD: the same as GENE |complement(250955..252532) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +248 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.19 1 gtaaaaagag ttagaaggct caaataaact ttaaatggtt ttaaatgggc 51 cttaagagaa actaatggat tttgaaggcc caaaataaag attactgtcc 101 gagacataaa agaccctgag aattcagaaa atttacaaac aaatgccata 151 actcgtttcg ctcaccctct taactcttta gaacaagtag aagaagtctc 201 ATCTTCTTCG TCTTCTTTGC GATCCTTCTG ATTTCACTAA GGTAAGCCGA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: actin-depolymerizing factor, putative |LOCUS: AT4G00680 |PROD: the same as GENE |complement(279603..280699) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.29 C - 0.24 1 ccaaagttga gctcatatgc aacaaacaca aataaatata gatttatatg 51 tattatcaag gattaaaact atatataggt ttgaaaaaaa tgggcacgac 101 gtgatagcat caaagtcatc tatttcaaga cgtgatcagc ctaaagacca 151 aaagaaaata tcaaatatta cccaactttt gtgtttttcc tcaacctcat 201 AAACCCCCCC AATCCTCCTC ACTCTTCCCT ATCCTCTTCA TTTTTCCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00423 Mean Expected Number 0.008 +strand -103 : -98 GACGTG AC RSP00423 Mean Expected Number 0.008 +strand -72 : -67 GACGTG AC RSP00424 Mean Expected Number 0.008 -strand -67 : -72 CACGTC AC RSP00424 Mean Expected Number 0.008 -strand -98 : -103 CACGTC AC RSP01014 Mean Expected Number 0.008 -strand +44 : +35 aAAATGAAGA AC RSP01699 Mean Expected Number 0.008 +strand -102 : -96 ACGTGAT AC RSP01699 Mean Expected Number 0.008 +strand -71 : -65 ACGTGAT Totally 7 motifs of 4 different REs have been found Description of REs found 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G00770 |PROD: the same as GENE |331157..333477 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.14 T - 0.35 C - 0.26 1 aaactcagtt cctttctttc tctaagcctg tcatcatctt gagatcttca 51 tcaagaagct gcctctctct ttccataaac tcacatcagc cacacataaa 101 tacatcttaa cactcctaag catttcacta gcccactccc gtctttcaag 151 atattttctt tttgttaaga cactttctta tcgtcagttc agtgtttttc 201 AAGTTCAGCT TCGTACCTGA GCCAAAGAGT GTTTCAGGAT GGAGCTAAGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.010 +strand -24 : -15 CTTaTCGTCA AC RSP00613 Mean Expected Number 0.003 +strand -151 : -144 ATCAAGAA AC RSP00862 Mean Expected Number 0.008 -strand -184 : -192 AGAAAGGAA AC RSP01174 Mean Expected Number 0.004 +strand -68 : -58 CCaCTCCCGTC Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT4G00870 |PROD: the same as GENE |complement(362169..363691) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.38 C - 0.18 1 caaagttgga ccactatacg ataaattgtt gttcttataa cgttaaagta 51 ggaaaacagt tcagttttca cgtgactaac ttactactat tggaatattt 101 atcataaact ttaattcacg aaaatcatta atgaaaattt gatattacta 151 ctataatatc gtcttctcta ttaatttaga atcttattca tccttttcca 201 CTTGTCTTCT CTAACCCTCT AAATTCTCTT TGGTCGGGAT CACTGGAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 +strand -4 : +6 tCCACTTGTC AC RSP00340 Mean Expected Number 0.003 +strand -4 : +6 TCCACtTGTC AC RSP00522 Mean Expected Number 0.008 +strand -3 : +4 CCACTTG AC RSP00593 Mean Expected Number 0.004 +strand -22 : -14 GAATCTTAT AC RSP00683 Mean Expected Number 0.003 -strand +6 : -4 GaCAAGTGGA AC RSP01031 Mean Expected Number 0.010 +strand -23 : -16 AGAATCTT AC RSP01751 Mean Expected Number 0.001 +strand -4 : +5 TCCACTTGT Totally 7 motifs of 7 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATP synthase delta chain-related |LOCUS: AT4G00895 |PROD: the same as GENE |381788..382643 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.39 C - 0.14 1 atgattaatg actaaaaccc ttaaaagtgg ttaagtgcaa aatcaacttt 51 agattttttt atacaaaatc aacttagatt ttttaataac tctaatcccg 101 tatttttttt tttggcagtt atTCAATttt gtacgttacg tatacgtata 151 cgtatgagat ctaaagatat atattagtta tttcgagatg gataaaatgt 201 GAAAGGCCTG CAATTGTTTC ATTTTATCGT CAGCCATGGA TACTCTCTCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.005 -strand +43 : +35 GTATCCATG Totally 1 motifs of 1 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G00955 |PROD: the same as GENE |412118..413278 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.32 C - 0.06 1 agataatttt agttacgaaa ttgaaacata acaagaaata gttagtttta 51 ttgtaaaata cgatgaagag agagaaaaaa aaaacaaaaa atagttttaa 101 gaggttgaaa acatatttta aatataagga aaaaaaatta taattataaa 151 tatattttat ttcgttagta caaatatata gaaagaagtc aacgttcaac 201 GAAGGTGATG AATTACATGA AGGTGAGTAG TTTTCTGAGT TTCTTATGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.001 -strand -178 : -188 CAATTTCGTAA AC RSP00653 Mean Expected Number 0.008 -strand -125 : -135 TTCTCTCTCtT AC RSP00750 Mean Expected Number 0.001 +strand -153 : -142 TTATTGTAAAAT AC RSP00864 Mean Expected Number 0.003 +strand -134 : -126 AGAGAGAGA AC RSP01080 Mean Expected Number 0.000 -strand +28 : +17 ACTCACCTTCaT Totally 5 motifs of 5 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 998. Group TF: DcMYB1 /AC: RSP01080//OS: Daucus carota /GENE: DcPAL1/RE: box-L2 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G01026 |PROD: the same as GENE |447090..448510 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.29 C - 0.19 1 ggagaagaga gatatacaca cgtgcttaaa gtcaacagct aatccaaaaa 51 ggtagacgac aaaccagtta aactaagaca cgtaatctat cttaaagatt 101 tgtcggttca tcgtaaatcc gttggtggat taatatatgt cggtgtcttc 151 gttgattttc ttagcctaac caaccaaaca taaataaaaa tcgaagcttt 201 ACTTTGTTTG CTTCTATTAT ATCCACTTCC AACAAGATTC CTCAAAAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00070 Mean Expected Number 0.003 -strand -117 : -124 TACGTGTC AC RSP00524 Mean Expected Number 0.009 +strand -183 : -177 ACACGTG AC RSP00817 Mean Expected Number 0.003 +strand -184 : -175 cACACGTGCT AC RSP00918 Mean Expected Number 0.007 -strand -165 : -174 GTTGACTTTA AC RSP01035 Mean Expected Number 0.009 -strand -118 : -124 ACGTGTC AC RSP01091 Mean Expected Number 0.005 -strand +17 : +7 ATAGAAgCAAA AC RSP01152 Mean Expected Number 0.002 +strand -184 : -175 CACACGTGCt AC RSP01261 Mean Expected Number 0.007 -strand -116 : -123 TTACGTGT Totally 8 motifs of 8 different REs have been found Description of REs found 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G01070 |PROD: the same as GENE |complement(461592..463449) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.10 T - 0.29 C - 0.18 1 atgtccacaa tttaaatggt tgatttcata ttaacatgag aaatcacaaa 51 ataataagta taaaaatgaa ttacgtaaat gatgattttt tagtttaaat 101 aatcggtcac caaaatattc atattcgaac atggtcgcca caagcgacat 151 tctacaaaaa aaacacatac aagtaaatag aaaatagaat ttctcctctc 201 AATGATTCAC ACAAACTCTC TATATAAAGC CATTACTTAA TACCACACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00241 Mean Expected Number 0.009 +strand -97 : -92 CGGTCA AC RSP00395 Mean Expected Number 0.009 +strand -130 : -121 TTACGTAaAT AC RSP00735 Mean Expected Number 0.006 -strand -111 : -118 AAAAATCA Totally 3 motifs of 3 different REs have been found Description of REs found 234. Group RE: C1-motif (2) /AC: RSP00241//OS: Zea mays /GENE: Bronze2/RE: C1-motif (2) /TF: unknown 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GBF2 |LOCUS: AT4G01120 |PROD: G-box binding factor 2 (GBF2) |complement(481597..484483) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +513 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.18 T - 0.33 C - 0.27 1 atgactacgt gtaccaatca ttatttaagt cagatattta aaatgtccag 51 cgcagatcta gggttgccag ctcagcatat gcgttccctt tgcaaaccct 101 tcaagatcat gacacgtgta cggtgacgtg ttcatcagcc tcttggcgct 151 ccgttgtgtc tctcttcttt ttcttctctt ctccttcctc tctcttcttt 201 TACCGAACTC TGGTTCTAGA GAGAGAAACC ATTCTCTCCG ACTAAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00195 Mean Expected Number 0.002 +strand -195 : -185 TaCGTGTACCA AC RSP00337 Mean Expected Number 0.010 +strand -167 : -159 ATATTTAAA AC RSP00340 Mean Expected Number 0.002 -strand -81 : -90 TaCACGTGTC AC RSP00524 Mean Expected Number 0.009 +strand -89 : -83 ACACGTG AC RSP00863 Mean Expected Number 0.005 -strand -8 : -16 AGAGAGGAA AC RSP00864 Mean Expected Number 0.000 +strand +18 : +26 AGAGAGAGA AC RSP00997 Mean Expected Number 0.002 +strand -79 : -70 GGTGACGTGT AC RSP01035 Mean Expected Number 0.009 -strand -84 : -90 ACGTGTC AC RSP01167 Mean Expected Number 0.001 -strand -161 : -169 TAAATATCT AC RSP01256 Mean Expected Number 0.003 +strand -89 : -82 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -82 : -89 ACACGTGT AC RSP01258 Mean Expected Number 0.003 +strand -77 : -70 TGACGTGT AC RSP01260 Mean Expected Number 0.005 +strand -196 : -189 CTACGTGT AC RSP01654 Mean Expected Number 0.005 +strand -79 : -70 GGTGACGTGT AC RSP01717 Mean Expected Number 0.000 -strand -80 : -91 GTACACGTGTcA Totally 15 motifs of 14 different REs have been found Description of REs found 188. Group RE: Box II /AC: RSP00195//OS: Oryza sativa /GENE: Gt2/RE: Box II /TF: unknown 323. Group TF: SEF1 /AC: RSP00337//OS: Glycine max /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/RE: SEF1 BS /TF: SEF1 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ribosomal protein L5 family protein |LOCUS: AT4G01310 |PROD: the same as GENE |complement(543970..545535) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.29 C - 0.20 1 ttagaagccc aaatagtaaa cgggctgaga tttaggccca tatgaaacaa 51 cccctatatt ttatctaaaa tctctaagta taatagtata ttatcaaata 101 ttggggcctt agttgaaata ttatgtttta aaggggctaa acggaaaact 151 ccttatcctc aaactgtcaa caaattacga aggtgccatt gggtttaatc 201 AACAACGAAC GCCGAGAGCT CTCACTTCAC ACTTTATCCA CTTGGAGCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.010 +strand +38 : +44 CCACTTG AC RSP00683 Mean Expected Number 0.003 -strand +46 : +37 tCCAAGTGGA AC RSP00874 Mean Expected Number 0.001 +strand -75 : -65 TTTTAAAGGGG Totally 3 motifs of 3 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G01410 |PROD: the same as GENE |578165..579169 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +143 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.35 C - 0.18 1 aagtacttct ctatcttata ttattacatt aagtattata acaaaataaa 51 atcacaatgt aaaaacagta gtaatttacg gctactttat aaaaagatta 101 gctttaacac ataattacaa ctacaagctt tctaagttaa taaACAATta 151 ataaaactgt actctagaag actgtttact cttattaact agaaaagaga 201 CAAAACCTTG CATCTACTTA TCTTCTTTCT TCTCCTCCTC CTTCTTTAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01641 Mean Expected Number 0.002 -strand +5 : -5 TtTTGTCTCT Totally 1 motifs of 1 different REs have been found Description of REs found 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: brix domain-containing protein |LOCUS: AT4G01560 |PROD: the same as GENE |complement(677054..679229) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.31 C - 0.20 1 atcgttataa tgaaacgcca tagtataatg tttcttcaag gcccagaatt 51 aagcccgtta atagactgat acggcgacgg tttaacgaat attataaaga 101 tagataggcc tatgcttaaa gatgggccca agcataggcc catttgtata 151 ggtttttcaa ttttgagtcg ataaacccta agttagtctc cgtcgtcttc 201 ATTCTCAGCT TTGCCGTTTT CATCGATTAA AGAGAGAGAG GCTTCGTTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -20 : -28 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -28 : -20 AAACCCTAA AC RSP00864 Mean Expected Number 0.001 +strand +31 : +39 AGAGAGAGA AC RSP00297 Mean Expected Number 0.000 +strand -161 : -20 GGCCCA-- ** bp --ACCCTAA AC RSP01016 Mean Expected Number 0.008 -strand -166 : -173 AGAAACAT AC RSP01303 Mean Expected Number 0.003 +strand -29 : -20 TAAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -29 : -20 TaAACCCTAA AC RSP01612 Mean Expected Number 0.000 -strand -97 : -110 TCTaTCTTTATAAT Totally 8 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1432. Group TF: GmDof4 /AC: RSP01612//OS: Glycine max /GENE: Synthetic OLIGO/RE: CRA1-2 /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: serine protease inhibitor |LOCUS: AT4G01575 |PROD: the same as GENE |complement(681868..682583) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.08 T - 0.48 C - 0.18 1 ttttaaaaca ttcctctttt ttttcccaac aataaataaa ataaaatttt 51 cttcactttt tttctttttc aatttgcttt tttaaataat ttaatatata 101 aataacttct tctctgtcaa agatttttcc tgattctttc ttttttcctc 151 tattgatttt ttttttgctc attcgttgtt tcctttcagg aaaagagagg 201 AAACAACGTT TCGTCTTCTC AGATTCTTTA CCTTTCTTAA GGAAAAATCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00281 Mean Expected Number 0.008 -strand -2 : -6 CTCTC AC RSP00384 Mean Expected Number 0.008 +strand -6 : -2 GAGAG AC RSP00863 Mean Expected Number 0.000 +strand -7 : +2 AGAGAGGAA AC RSP01463 Mean Expected Number 0.004 -strand -98 : -110 ATTTATATATTaA Totally 4 motifs of 4 different REs have been found Description of REs found 272. Group RE: Motif VII /AC: RSP00281//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VII /TF: unknown 369. Group RE: GAGAG motif /AC: RSP00384//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GAGAG motif /TF: runknown TF 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: cathepsin B-like cysteine protease, putative |LOCUS: AT4G01610 |PROD: the same as GENE |694695..697126 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +162 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.31 C - 0.22 1 ttgttaaatt gtcattgcga tttcgtaaca aagggtccaa ctccaatccc 51 ataaaaaatt acgaacgatg tgtaatgact aatgacgcaa cgtggcaatc 101 atgtatacct tcaacggcct agaattctgt agattgcaTC AATcaacggc 151 taagatcttc ttttggctct taacaaagtc attggctgat tcagtttccc 201 AAGAAATGTC TCTGTCATTG TGCAGTAGAT AAGCCACTCT CTCTCTCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -114 : -105 GCaACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -105 : -114 GCCACGTtGC AC RSP00441 Mean Expected Number 0.006 +strand -174 : -165 AACAAAGgGT AC RSP00680 Mean Expected Number 0.008 +strand -30 : -21 TAACAaAGTC AC RSP00864 Mean Expected Number 0.002 -strand +48 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +46 : +38 AGAGAGAGA AC RSP01032 Mean Expected Number 0.007 -strand -35 : -44 CCAAAAGAAG AC RSP01034 Mean Expected Number 0.006 +strand -111 : -105 ACGTGGC AC RSP01209 Mean Expected Number 0.007 +strand -44 : -35 CTTCTTTTGG AC RSP01210 Mean Expected Number 0.009 -strand -23 : -32 CTTTGTTAAG AC RSP01642 Mean Expected Number 0.006 +strand +4 : +13 AAATGTCTCt Totally 11 motifs of 9 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: KCO5 |LOCUS: AT4G01840 |PROD: outward rectifying potassium channel |793261..795139 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.29 C - 0.20 1 aatgccaatg gtataccatt gtaaataagt gtcaagtaga ggatttattt 51 gctaaaatga ttagaaaaat gtatatatag ataccattac caatctaaac 101 ctaaacactt acttgcgtga agccatgaac taACAATaat aatacacatg 151 tggtctgacg ataaatctga ttttcatacg tggcatacta tgtgtgcccc 201 ATTCTATAAA CAAATTGCTA ATCCAAAACA CCAATCACAC TCCTCTCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -24 : -17 TACGTGGC AC RSP00158 Mean Expected Number 0.007 +strand -155 : -145 TATTTGCTaAA AC RSP00247 Mean Expected Number 0.002 -strand -17 : -26 GCCACGTAtG AC RSP01034 Mean Expected Number 0.003 +strand -23 : -17 ACGTGGC AC RSP01076 Mean Expected Number 0.001 +strand -26 : -17 CATaCGTGGC AC RSP01469 Mean Expected Number 0.010 -strand -48 : -57 cCACATGTGT Totally 6 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G01960 |PROD: the same as GENE |complement(851210..853078) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +637 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.37 C - 0.18 1 aacaataata aaaagaagac caattttcaa tttgttttcg gcgacattac 51 aatccaaaag acattcttgt gtgttgtgtt tctttatttt tagtattaaa 101 aaaaaccaga tttaatcggg acacgaacaa aagagaaaag aaaaatcaaa 151 atttttgacc tttatgaacc ctaattttgg gttggtcact ctctctctct 201 CTCTTTCCTT TCCCAAAATT GGATTCAAAG TTCTTTCTTT TTGTCTTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.008 +strand -74 : -65 AcAAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +4 : -5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +2 : -7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -1 : -9 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -3 : -11 AGAGAGAGA AC RSP01032 Mean Expected Number 0.008 -strand -21 : -30 CCAAAATTAG AC RSP01303 Mean Expected Number 0.005 +strand -36 : -27 TgAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -36 : -27 TGAACCCTAA AC RSP01454 Mean Expected Number 0.003 -strand -15 : -21 ACCAACC Totally 9 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G02370 |PROD: the same as GENE |1042338..1043206 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.32 C - 0.20 1 gtctaaatta tatacaattt ttttttgtct ttttgttaac aaatgtcttg 51 ataaaattta attcatgatt atctaagaga acttttccca aaaatttgtc 101 ttatcactac aacctgactg cctgtagaaa ctaaccacgt gtccagttgt 151 ctacctaaaa cggcgtagtt tatatctaac aaaagatatt ttcaacgacc 201 ACCATTATTA CAAAAAGTCT ACGACGGCAA AACGAAAATC CACAGGCGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.001 +strand -66 : -57 CCACGTGtCC AC RSP00204 Mean Expected Number 0.001 -strand -58 : -67 GACACGTGGt AC RSP00340 Mean Expected Number 0.003 +strand -67 : -58 aCCACGTGTC AC RSP00524 Mean Expected Number 0.006 -strand -59 : -65 ACACGTG AC RSP00838 Mean Expected Number 0.007 -strand +27 : +22 CCGTCG AC RSP01035 Mean Expected Number 0.006 +strand -64 : -58 ACGTGTC AC RSP01191 Mean Expected Number 0.001 +strand +40 : +47 CCACAGGC AC RSP01255 Mean Expected Number 0.001 -strand -59 : -66 ACACGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: EID1 |LOCUS: AT4G02440 |PROD: F-box family protein |1072481..1073779 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.30 C - 0.20 1 aaaattttga aaacgttcac aataaatgaa cctaaaaaga catgtgcatt 51 gaactcattt tgatacccgg accctttaca ttttagttca gtccgtacga 101 tgtcattttc gagagctgtt gcgcattact tacttgcctt tgtgtgggtg 151 ttagtgaatc tgtgacccac cttaagaaca gttaagacta ttcccggttt 201 ACGCGTACCG GACCCATAAC AGTATAAGTG AATTTGGATA AGAAAGGAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.008 +strand -46 : -36 TGAATcTGTGA AC RSP01215 Mean Expected Number 0.001 +strand -64 : -54 CCTTTGTGTGG AC RSP01598 Mean Expected Number 0.007 +strand -100 : -93 TGTCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 1123. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/RE: EM2 /TF: MADS box TFs 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxidoreductase |LOCUS: AT4G02485 |PROD: the same as GENE |1092681..1094595 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.33 C - 0.10 1 gtgatgtcaa cctacatgaa gatttttcga tcagaggaaa gaactgatat 51 taatctttag gattaggttg ttttaattac gttcttgcca aatttgattt 101 gattttatgg aattaATTGT aaaagacttg gggctattta tatgaaagtt 151 tcgtgatttt cattgataag taggtcgtca aagaaataga gaagaagccc 201 AAAAAAATAA AATAATGGAC GAAGAAGCAG AGAATTTGAG AGCAGCTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01012 Mean Expected Number 0.004 +strand -191 : -185 ACCTACA AC RSP01091 Mean Expected Number 0.008 -strand -93 : -103 ATAaAATCAAA AC RSP01692 Mean Expected Number 0.002 +strand -175 : -168 TTCGATCA Totally 3 motifs of 3 different REs have been found Description of REs found 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: vacuolar ATPase subunit F family protein |LOCUS: AT4G02620 |PROD: the same as GENE |complement(1149248..1151346) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +214 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.36 C - 0.14 1 cgtaccctcg aagaggcaag ctggctttga tgggacttgc actcatcatt 51 atttttagta tatatttaca cttttgccac ttttactgtt aatgagcaat 101 tattaaagga gggtagtatc gttattaaag gtatagtcag gggtaatatt 151 gtcaattgaa tcgtgttctg aacaagtttt ttttttgcgc gtggtctttg 201 GTTGTGATTT ACACAAATCT ATCTATCAAA TCAAATCGAA GAAGGAGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 +strand -134 : -124 TACACTTTTGc AC RSP00870 Mean Expected Number 0.009 -strand -114 : -123 aGTAAAAGTG AC RSP00953 Mean Expected Number 0.004 +strand -104 : -96 CAATTATTA AC RSP01621 Mean Expected Number 0.010 +strand -134 : -125 TACACTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: small nuclear ribonucleoprotein D1 |LOCUS: AT4G02840 |PROD: the same as GENE |1264627..1266486 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.35 C - 0.17 1 tgattagatt ccgcaaatca gattatttga gttaattatt ctgtttcttt 51 catttggggt tgtttttgtt caataaaaag ttgagaaggg tgttattgat 101 aagttcaaaa caaatagggt ataaccaaac attcaaggaa gtaagagacc 151 gtcggtgtga agcagaatcc ataattgggg acttaaacat aaattcccct 201 ATTGCTGCTT TTCCTCCTCC CGCTCTTGCT TCTTGCCATT GCTGTTTCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01015 Mean Expected Number 0.001 -strand -145 : -154 CAAATGAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ABP1 |LOCUS: AT4G02980 |PROD: auxin-binding protein 1 (ABP1) |complement(1319656..1321477) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.39 C - 0.15 1 tcatcaaaac tttctcttaa tatttctaaa attaattaat tccctccttt 51 tatcttcaac attggattat cgaaaatgaa aaatagtatt ttctgactct 101 tttttatagt atcgggttta attcagaaat atataaagct ttggggtctg 151 tttcgaagta tctttactct tttaacagtt ctgagacttc taaagagagg 201 AAAATTAGTT CGTCGAAGCA TCGAGAAAAT GATCGTACTT TCTGTTGGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.000 +strand -7 : +2 AGAGAGGAA Totally 1 motifs of 1 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: proline-rich family protein |LOCUS: AT4G03120 |PROD: the same as GENE |1385664..1387526 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.19 T - 0.38 C - 0.21 1 gcggggagat atctccgatc attttgtttt ttccgttatt ctttcttggg 51 aaatggtctg tttatacgtc gtgtgaaacg acgtcgcttt cagagataat 101 tctccagttA TTGAtagccg ttagatatca taaatgaatc tggaccgtcg 151 gatgatatca ttcttttttt tattaaagta ggcgaaaagt aaattcgact 201 CCCTCTTTGC ACTTTCTTCT TCCCGTCGCT ACCGAAAGCT TCTGTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.002 -strand -53 : -60 ACGGTCCA AC RSP00879 Mean Expected Number 0.004 +strand +33 : +39 CGAAAGC AC RSP01497 Mean Expected Number 0.003 +strand -57 : -48 aCCGTCGGAT Totally 3 motifs of 3 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G03180 |PROD: the same as GENE |1403201..1405570 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.33 C - 0.21 1 agatgtccgt gggcttattg ggcaagccca atatcatgaa ttctgatatg 51 cagatcctaa aactattgcg gtgcttttca taatgtatct aactctacgg 101 tggttctctg tgaaaaagat gaaactataa gggtataata ACAATttaaa 151 ataaggtcgg cgattcccac ttcagacttc agagtgtcgc ctccaatttc 201 AATTAGGGTT CCTACTTTCT TCTCCTTTCT CGTAACTTGA TCAAATCTGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00940 Mean Expected Number 0.007 +strand -108 : -99 cTCTACGGTG AC RSP01304 Mean Expected Number 0.003 -strand +12 : +3 gGAACCCTAA Totally 2 motifs of 2 different REs have been found Description of REs found 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: XTH9 |LOCUS: AT4G03210 |PROD: xyloglucan:xyloglucosyl transferase |1415949..1417352 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.19 G - 0.15 T - 0.40 C - 0.27 1 gctacatttt tcttttatct ctctgtctct ctcttctttt gagtgatttt 51 ttatgaagat gggttctttt gtccacttat tactgtcctg aatcacacgt 101 cgaatcctac gtggcatctc tctccATTGT atgccagctc actctcactc 151 actcactcac ctcccgcctt tataaagcct tacctctctc tcttgtctcc 201 TTCATTGAGT CAAGTGCTCG AGACTGTAGA GTGAAGTTTG ATTTATTTAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 +strand -93 : -86 TACGTGGC AC RSP00110 Mean Expected Number 0.003 +strand -107 : -100 CACACGTC AC RSP00190 Mean Expected Number 0.008 +strand +6 : +12 TGAGTCA AC RSP00247 Mean Expected Number 0.006 -strand -86 : -95 GCCACGTAgG AC RSP00778 Mean Expected Number 0.003 -strand +12 : +3 TGACTCAATG AC RSP00865 Mean Expected Number 0.008 -strand -76 : -84 GGAGAGAGA AC RSP01019 Mean Expected Number 0.003 +strand -148 : -142 ATGAAGA AC RSP01034 Mean Expected Number 0.004 +strand -92 : -86 ACGTGGC AC RSP01259 Mean Expected Number 0.002 +strand -94 : -87 CTACGTGG Totally 9 motifs of 9 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SYP123 |LOCUS: AT4G03330 |PROD: syntaxin, putative (SYP123) |1466335..1467744 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +189 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.34 C - 0.22 1 ttgtacataa ctcataaccg ccttaaggtc cactggttta attacattga 51 attttttttc ggttaagtgg gctccatgat tccccacagg acataaaaaa 101 gtgatcattA TTGGagacca cgtctctgca acatggtacc aaccaaatca 151 caatgtcagt aattttacat tccatcttct ttacaaagtc ttccttggtc 201 TTGAAACTCT TGACTGGTTC TAAACACAGC TCATTATATG TCTATTTAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.007 +strand -84 : -75 aCCACGTCTC AC RSP00445 Mean Expected Number 0.005 +strand -106 : -97 AAAAAAGtGA AC RSP01000 Mean Expected Number 0.005 +strand -122 : -113 ATtCCCCACA AC RSP01250 Mean Expected Number 0.001 -strand -146 : -155 AAAATTCAAT Totally 4 motifs of 4 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G03600 |PROD: the same as GENE |complement(1603700..1604506) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.38 C - 0.18 1 ctacatttct ttttctgtat aacaaaatct taaatttaaa tcgttatggt 51 aacgaaatct tttcttttgt ttttccagtt tattgattaa atatacttcc 101 acagaattta aatttactta attattaaaa ACAATgcagt cacaatcttt 151 ccaattacca tttcattatc tcacaaattc gaccaaatgt ttttcatatt 201 TCACAAAAAA AAATATATTA AAGCGCGTGT GAACCATAAC CACGCGATTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00523 Mean Expected Number 0.001 -strand +30 : +24 ACACGCG AC RSP01559 Mean Expected Number 0.002 -strand +28 : +23 ACGCGC Totally 2 motifs of 2 different REs have been found Description of REs found 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G03960 |PROD: the same as GENE |1887526..1889209 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +145 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.34 C - 0.16 1 tatttttaac acatgaaaaa aatattttaa acaaaaaaaa caatttaatt 51 ccaatatttt agaaaatatt ctaataatta atctcattac ttaagttaac 101 ccctaaatat gttacgtttt aaaactatct aagcacgttc taatacacat 151 catacatcat acagaaacac atatattcct ccgtgctgta acacgggtct 201 GATCTTAGTA AAATAGTGGA GAGAAGAATA TTCTTCTGGA TACCTTTTAA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: pux4 |LOCUS: AT4G04210 |PROD: UBX domain-containing protein |2030348..2031850 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.11 T - 0.33 C - 0.28 1 caaatctaag ttttgtattc ctccttttta agttacataa ttccccaatt 51 cctccaccat atcacgcgcc cacgtgaatt aaccagacac cacaaaccac 101 acacattagt tataacctcc acgcgcttaa tcagcgcgta taacaaatga 151 acgtctctct agcgttgttc gttttgatat cttctcgact tctccacttc 201 TTTAGATTTG ATTCTTCTTC TCTGATCTCT GAAAAAACAC AATGTCTTCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00640 Mean Expected Number 0.002 -strand -124 : -131 TCACGTGG AC RSP01015 Mean Expected Number 0.003 +strand -57 : -48 CAAATGAAcG AC RSP01205 Mean Expected Number 0.009 +strand -178 : -169 CCTTTTTAAG AC RSP01559 Mean Expected Number 0.009 -strand -62 : -67 ACGCGC Totally 4 motifs of 4 different REs have been found Description of REs found 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: autophagy 8b (APG8b) |LOCUS: AT4G04620 |PROD: the same as GENE |complement(2328494..2330198) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +274 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.27 C - 0.25 1 ttgtccacgc ctagtagtcc tgatcatgta aatgacagaa aagcccaaac 51 gagatccaaa cctataaagg cccaataaat agttcacaaa ctcatgacca 101 ctACAATcca acgacgtcgt atcatctcgc tgacgtaaga taagcatcgt 151 aactaattaa aatccaagta ataagtttgg gtgccgtgca ggtaacaatc 201 ACTAAACCCT AAATCCATCC TCTCTGTTTC CTTTATATAT ATTCTCTCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.003 +strand -70 : -63 TGACGTAA AC RSP00144 Mean Expected Number 0.007 -strand -18 : -23 CACCCA AC RSP00279 Mean Expected Number 0.005 -strand +12 : +4 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand +4 : +12 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -132 : +11 GGCCCA-- ** bp --ACCCTAA AC RSP01046 Mean Expected Number 0.004 +strand -97 : -89 CAATCCAAC AC RSP01237 Mean Expected Number 0.008 +strand +31 : +40 CTtTATATAT AC RSP01303 Mean Expected Number 0.010 +strand +3 : +12 TAAACCCTAA AC RSP01304 Mean Expected Number 0.006 +strand +3 : +12 TaAACCCTAA Totally 9 motifs of 9 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATPC1 |LOCUS: AT4G04640 |PROD: ATP synthase gamma chain 1, chloroplast (ATPC1) |complement(2350496..2352016) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.23 C - 0.26 1 ttggggtcaa aactcataaa ataaaaaagc aattattggt tggctgataa 51 acaattacaa agaagtaaga tatataccac acaccccaaa aaaaaaaaac 101 ATTGAagata tcgaaccatc cactaataca acgccacgtc aacaaaaaga 151 ggatcccaca atttgcagac tccaaatagc aaatgtaaaa ccttatctcc 201 AAACCTAATC TCATCACCTT CTCTTCCCTC CACTCAAATC TCTCCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -60 : -68 TGACGTGGC AC RSP00214 Mean Expected Number 0.004 -strand -60 : -67 TGACGTGG AC RSP00215 Mean Expected Number 0.004 +strand -67 : -60 CCACGTCA AC RSP00248 Mean Expected Number 0.002 +strand -68 : -59 GCCACGTCAa AC RSP00316 Mean Expected Number 0.007 -strand -160 : -165 AACCAA AC RSP00850 Mean Expected Number 0.003 -strand -157 : -162 GCCAAC AC RSP00917 Mean Expected Number 0.008 -strand -58 : -67 GTTGACGTGG AC RSP01034 Mean Expected Number 0.004 -strand -62 : -68 ACGTGGC AC RSP01060 Mean Expected Number 0.003 +strand -171 : -163 CAATTATTG AC RSP01060 Mean Expected Number 0.003 -strand -163 : -171 CAATAATTG AC RSP01077 Mean Expected Number 0.001 -strand -163 : -171 CAATAATTG AC RSP01081 Mean Expected Number 0.003 +strand -90 : -79 TCgAACCATCCA AC RSP01106 Mean Expected Number 0.000 +strand -70 : -60 ACGCCACGTCA AC RSP01280 Mean Expected Number 0.001 -strand -58 : -68 GtTGACGTGGC Totally 14 motifs of 13 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 302. Group RE: REalpha /AC: RSP00316//OS: Lemna gibba /GENE: Lhcb2*1/RE: REalpha /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 999. Group TF: DcMYB1 /AC: RSP01081//OS: Daucus carota /GENE: DcPAL1/RE: box-L3 /TF: DcMYB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G04800 |PROD: the same as GENE |2439548..2441203 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.32 C - 0.13 1 gatttcaagt gagattgaga agatgaagaa gagcaagttt ataaaaccct 51 gaacaaaaac cccgacaggg ttgttctatc caattttaaa ccttaggggt 101 gataatttaa TCAATcatat aaattagggg taatcatgta aattaacaag 151 attagttgaa gaagaatcgt caaattttga ttttgtcttg tggattcttc 201 AATTCAAAGA TTATAAATTT ATTGATGAAC ATCGTCAATT CAAAGATTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01031 Mean Expected Number 0.010 -strand +50 : +43 AGAATCTT AC RSP01602 Mean Expected Number 0.007 -strand -181 : -188 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G04830 |PROD: the same as GENE |2445857..2447082 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.28 C - 0.22 1 ctataatatc aaacccgaat tttgtaaacc gaaccgggac aggataatgg 51 gacaaatgag cacttgtatt atcacgtgca ttaatcattc accagtttta 101 tagtagatca cagtggttca tatgtatcta gacgcaaact ttgaatcatt 151 catcaacgca atctaagtac aaatatagat ctcactgcaa tgtttcaagc 201 ACCAACCTGA TCATCATCAA AACCATTTCA TCCGTAGTGG TCAATGGCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.008 +strand +46 : +51 GGCGGC AC RSP00807 Mean Expected Number 0.008 -strand +51 : +46 GCCGCC AC RSP00855 Mean Expected Number 0.001 -strand -104 : -115 AACtGGTGAATG AC RSP00913 Mean Expected Number 0.004 -strand +32 : +23 GATGAAATGG AC RSP00914 Mean Expected Number 0.006 -strand +32 : +23 GATGAAATGG AC RSP00966 Mean Expected Number 0.002 -strand -121 : -130 tGCACGTGAT Totally 6 motifs of 6 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 792. Group RE: 12 bp element /AC: RSP00855//OS: Arabidopsis thaliana /GENE: FIL/RE: 12 bp element /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CDP-alcohol phosphatidyltransferase family protein |LOCUS: AT4G04870 |PROD: the same as GENE |complement(2461211..2464141) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.31 C - 0.26 1 atcggtttcg gatttctgat tttatgctca gccctaaaca aacatttgat 51 ccaattttcc gaatcgggct gaacgttgct aatccgattt cttattccgg 101 ttaatatccc gattcggtat agctataccg aatgatctca ccacgtgtac 151 ataaagcatc cacgtgtttc atgaagatta cacgtggcac aagccagcag 201 CGAAAACCTA GTCGCCTCTC TGATACATCT TCTTCCTCCT TTCCGGTGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -21 : -13 ACACGTGGC AC RSP00175 Mean Expected Number 0.002 +strand -20 : -13 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -22 : -13 tACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -23 : -12 TtACACGTGGCA AC RSP00340 Mean Expected Number 0.008 +strand -42 : -33 TCCACGTGTt AC RSP00682 Mean Expected Number 0.003 -strand -13 : -22 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -22 : -13 TACACGTGGC AC RSP00817 Mean Expected Number 0.003 -strand -52 : -61 TACACGTGgT AC RSP00936 Mean Expected Number 0.000 -strand -12 : -23 TGCCACGTGTaA AC RSP00938 Mean Expected Number 0.000 -strand -12 : -23 TGCCACGTGtAA AC RSP01019 Mean Expected Number 0.009 +strand -30 : -24 ATGAAGA AC RSP01034 Mean Expected Number 0.007 +strand -19 : -13 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -21 : -14 ACACGTGG AC RSP01255 Mean Expected Number 0.003 -strand -34 : -41 ACACGTGG AC RSP01255 Mean Expected Number 0.003 -strand -53 : -60 ACACGTGG AC RSP01584 Mean Expected Number 0.000 +strand -22 : -10 TACACGTGGCACa AC RSP01593 Mean Expected Number 0.000 +strand -22 : -11 TACACGTGGCAc AC RSP01722 Mean Expected Number 0.000 +strand -43 : -32 ATCCACGTGTtT Totally 18 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1410. Group TF: GBF /AC: RSP01584//OS: Nicotiana tabacum /GENE: Ntss-23/RE: G box /TF: GBF ||Identical REs AC: RSP01587 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G04925 |PROD: the same as GENE |2506161..2506784 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.35 C - 0.11 1 gaggaaatga aaagaaaaaa aacaaatttt attttattgt tttttcttaa 51 aatctaaaaa atctcatttt tgtgacttta aaaatttgaa cgtgaattga 101 ataaaaaaga gcagctatac ttttaaaaat aaataaaatc tttaaaatat 151 gattgataaa attttggctt ttaatacttt aaattaaaac taaagttttt 201 AAAGTGTCTT CCAATCAACC CCGTATTATA GAGTGCGGCG GCTTGCGGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.000 -strand +43 : +37 AGCCGCC AC RSP00117 Mean Expected Number 0.009 -strand -67 : -79 AtTTATTTTTAAA AC RSP00231 Mean Expected Number 0.007 +strand +11 : +17 CCAATCA AC RSP00438 Mean Expected Number 0.001 +strand +37 : +42 GGCGGC AC RSP00483 Mean Expected Number 0.007 -strand +49 : +45 GCCGC AC RSP00483 Mean Expected Number 0.007 -strand +42 : +38 GCCGC AC RSP00483 Mean Expected Number 0.007 -strand +39 : +35 GCCGC AC RSP00807 Mean Expected Number 0.001 -strand +42 : +37 GCCGCC Totally 8 motifs of 6 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATALN |LOCUS: AT4G04955 |PROD: amidohydrolase family protein |complement(2522032..2525278) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.27 C - 0.22 1 gaaggagagg aatcttatct ggcacagtcc aagttgtgct taatatctca 51 ccacaaccgt cgatcttcac gattgttgac acgatctaac ggtccttaga 101 gactcctggc ttgttctata accgaatctt ttaaagaatc tttaatcctt 151 agtaggcccc gcttcatagc caataagaga agctctctcc aaataatcgc 201 AGAAGAGATC AAGAGAGAGA TATGGAGAGA ACTTTGCTTC AATGGAGACT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00593 Mean Expected Number 0.002 +strand -191 : -183 GAATCTTAT AC RSP00837 Mean Expected Number 0.005 -strand -135 : -144 AGATCGACGG AC RSP00864 Mean Expected Number 0.001 +strand +12 : +20 AGAGAGAGA AC RSP00892 Mean Expected Number 0.002 +strand -161 : -153 TTAATATCT AC RSP01031 Mean Expected Number 0.006 +strand -66 : -59 AGAATCTT Totally 5 motifs of 5 different REs have been found Description of REs found 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G05060 |PROD: the same as GENE |complement(2590063..2592161) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.26 C - 0.27 1 tccattaacg aataacaccc ccttacaata tccgaatgga tcttagattt 51 ctaaatttgg aatacccgaa cccaaaaaac tcgactcgaa cctgatccga 101 ccCCAATccg aatacccaaa aacccaagcc ttattttttg agtgtaactc 151 aaccgttttt attgcttttc agaacgcaat cactacaaca accaaaaagt 201 AAGCTTTAAG CGAATCCAAA CGCTATCGTA TTAAACGCTA TTACTATCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.002 +strand -153 : -138 TTTCTAAATTTGGAAt AC RSP00085 Mean Expected Number 0.002 -strand -138 : -153 aTTCCAAATTTAGAAA Totally 2 motifs of 1 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: inositol monophosphatase family protein |LOCUS: AT4G05090 |PROD: the same as GENE |2609140..2611735 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.14 T - 0.32 C - 0.11 1 attttaaata aataatctga gaatattaaa atttatatta atcaaaattt 51 gaaaataaat cttactatat tcttagaaac tttaatgttt tatataatta 101 aaagatctta gtttccagAT TGGatcggga cttagttgac caaaaattgc 151 caaaaaaaaa agaagaacat gttaagagac aatttctcca gttcactagt 201 AACTGATAAA GTGATAACGG AGTTGGTTGG AACGTGAAAC GCTTATAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01185 Mean Expected Number 0.000 -strand +30 : +19 CCAACcAACTCC AC RSP01740 Mean Expected Number 0.000 +strand -68 : -56 TAGTTGACCAAaA Totally 2 motifs of 2 different REs have been found Description of REs found 1097. Group RE: box 2 /AC: RSP01185//OS: Petunia hybrida /GENE: chsA/RE: box 2 /TF: unknown 1547. Group TF: WRKY11 /AC: RSP01740//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS2 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxygen-evolving enhancer protein 3, chloroplast |LOCUS: AT4G05180 |PROD: the same as GENE |complement(2671820..2673241) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.27 C - 0.22 1 ttcaattaac tttgactagg tttaaccgaa ttggtcaatt tccacgtcat 51 tcagccacgt gacaatcgca ttctgggaac actcgatctc aatcctatgt 101 ggcaaaactg agaatcaaga aaccacgtgt caacatatta gtagttaaaa 151 ccatatccga gtaatctaag taacaacgtg aatcagataa ggtattcttt 201 GTCACATAAC CAAACACCAA AAATTATAAC TCAACACTTC ACTAATCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -147 : -138 GCCACGTGaC AC RSP00073 Mean Expected Number 0.001 -strand -138 : -147 GtCACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -140 : -147 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -70 : -79 GACACGTGGt AC RSP00204 Mean Expected Number 0.001 -strand -138 : -147 GtCACGTGGC AC RSP00214 Mean Expected Number 0.003 -strand -152 : -159 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -159 : -152 CCACGTCA AC RSP00340 Mean Expected Number 0.003 +strand -79 : -70 aCCACGTGTC AC RSP00459 Mean Expected Number 0.003 +strand -189 : -180 TTGACTAGGt AC RSP00467 Mean Expected Number 0.002 +strand -169 : -160 TGGTCAATTt AC RSP00468 Mean Expected Number 0.001 +strand -170 : -160 TTGGTCAATTt AC RSP00524 Mean Expected Number 0.006 -strand -71 : -77 ACACGTG AC RSP00640 Mean Expected Number 0.002 -strand -139 : -146 TCACGTGG AC RSP01034 Mean Expected Number 0.005 -strand -141 : -147 ACGTGGC AC RSP01035 Mean Expected Number 0.006 +strand -76 : -70 ACGTGTC AC RSP01139 Mean Expected Number 0.002 -strand -73 : -81 ACGTGGTTT AC RSP01255 Mean Expected Number 0.001 -strand -71 : -78 ACACGTGG AC RSP01275 Mean Expected Number 0.004 +strand -160 : -151 TCCACGTCAT AC RSP01450 Mean Expected Number 0.000 -strand -70 : -82 GACACGTGGTTTc AC RSP01482 Mean Expected Number 0.001 -strand -160 : -170 aAATTGACCAA AC RSP01602 Mean Expected Number 0.008 +strand -114 : -107 TCTCAATC Totally 21 motifs of 19 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1322. Group TF: OsIRO2 /AC: RSP01450//OS: Oryza sativa /GENE: OsFDH/RE: OsFDH-OsIRO2-BS /TF: OsIRO2 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: zinc finger and C2 domain protein, putative |LOCUS: AT4G05330 |PROD: the same as GENE |complement(2720558..2723122) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +446 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.37 C - 0.15 1 cataaaccaa attttaataa aaaaaaattt tttaaaaaaa acctatgaaa 51 caataacgcc ggattggaaa tagtgttttt ttttgggatt tttttaaatt 101 aACAATttgc tctaatttct ttatttaaaa aacgcagaaa aaaataataa 151 gataaaaaga aaagtgagca cgtagttgtc atttgcagat attatcattt 201 GCCAATTTTC TTGTAAATTC ACCTCTTTCC TTCGTCTATC TATCCTCCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01598 Mean Expected Number 0.010 +strand -24 : -17 TGTCATTT AC RSP01639 Mean Expected Number 0.009 +strand -27 : -18 AGTTGTCATT Totally 2 motifs of 2 different REs have been found Description of REs found 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: adrenodoxin-like ferredoxin 2 |LOCUS: AT4G05450 |PROD: the same as GENE |2758653..2760895 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +392 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.31 C - 0.13 1 cttgttattc ttctgcaaag aattgtgttg agtggcaaat tgttcctgat 51 tggtttctca ttaccaaatt tgtacatgga tgttggatta gttgtttggg 101 tcagaccggt ACAATccggt tcggtttaag acaatgtcga aattcgaaat 151 ataacaaacc aaatgtttta taagaaaaac agggaagaga aaacaaaaaa 201 AGGTTTAAGA TCTTCAAAAC ATGAAGAACA TATGAGATTC TGAGGTTGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00743 Mean Expected Number 0.002 +strand -171 : -160 GAGTGGcAAATT AC RSP01033 Mean Expected Number 0.006 -strand +3 : -7 CCTTTTTTTG AC RSP01509 Mean Expected Number 0.001 -strand -147 : -155 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 705. Group RE: box 3 /Group TF: GT-1 /AC: RSP00743//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 3 /TF: GT-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: F-box family protein (FBL20) |LOCUS: AT4G05460 |PROD: the same as GENE |complement(2760691..2762413) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.32 C - 0.19 1 tcggtttatt agccgaggcc tatcctaaac aatggagaga acatttgttt 51 tttgttgctc ttgccaactt ttgctgtggg tacaatataa ttataggcca 101 aggcCCAATa ttaaactagg cttggcccaa actggtttcg tagatatgtg 151 ataccataag gatctaattg taaaattaga gactgatgat aattcttgac 201 AATTCGATAC TTAGAAATGG CTTCTTCGTC TTCACCCCCG GCGGCGATGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.002 +strand -36 : -25 TaATTGTAAAAT AC RSP01150 Mean Expected Number 0.009 -strand -7 : -17 AATTATcATCA AC RSP01208 Mean Expected Number 0.000 -strand -166 : -177 CCATTGTTTAGG AC RSP01577 Mean Expected Number 0.010 +strand -177 : -168 cCTAAACAAT Totally 4 motifs of 4 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1118. Group TF: LFY /AC: RSP01208//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL3 /TF: LFY 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G07390 |PROD: the same as GENE |4195677..4197568 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.28 C - 0.18 1 ctaaatttaa aagttgaggc ttttttttta tattttttcc tctatataag 51 aaagaaaatt attgagtcta ttgaaaattg aagcaaaaaa atggaaaacc 101 gagaacgacg taATTGGgct gagtaagagg ccacgtatta aagcccagat 151 tgttatggtc ggaaagttta agattagaga ccacttcacg cgacttaaac 201 AACGAACCAA ACCTCTCTCT GCTCAGCTTT TCCGACCAAA AGATCCAAGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -64 : -71 TACGTGGC AC RSP00064 Mean Expected Number 0.003 -strand -62 : -71 AaTACGTGGC AC RSP00628 Mean Expected Number 0.006 -strand -47 : -54 AACAATCT AC RSP00819 Mean Expected Number 0.002 +strand -71 : -62 GCCACGTaTT AC RSP00860 Mean Expected Number 0.006 +strand -152 : -144 AGAAAGAAA AC RSP01034 Mean Expected Number 0.005 -strand -65 : -71 ACGTGGC Totally 6 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATCSLC12 |LOCUS: AT4G07960 |PROD: glycosyl transferase family 2 protein |complement(4802338..4805644) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +533 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.07 T - 0.42 C - 0.22 1 cttggtctta tctttctctc tcacccactc attacaattt taaccacagt 51 aaaaaaaaaa aaaaacagaa aatccatatc tcaactcaaa tccacatttc 101 tatttttact ttcttcttac cttacgtttg tcttttgcgg atattctcca 151 aaaaataatc cttttagatt actttcctct tttttttttt ttttttcttt 201 CGCGTGTGAT TATTAACTCG AGGTAATTTC TCTAATCCCA GTTAATATCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00317 Mean Expected Number 0.010 +strand -63 : -58 CGGATA AC RSP00523 Mean Expected Number 0.001 -strand +7 : +1 ACACGCG Totally 2 motifs of 2 different REs have been found Description of REs found 303. Group RE: REbeta /AC: RSP00317//OS: Lemna gibba /GENE: Lhcb2*1/RE: REbeta /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G08520 |PROD: the same as GENE |5417347..5420522 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +537 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.38 C - 0.19 1 tattattatt aatttaattt tgcgtaaacg ggagactata caattaagtt 51 tgagtttcct gattttcaaa tgttgggttt gtttgtataa tttcaaatgt 101 tggggtttaa tttGCAATat tcccgaatcc cgactactca ttctaaaata 151 taatcagacc ttcgcgtctt ctttaacagt tagttccata ccatcgtcgc 201 AAGCTCTCAT CTTCTTCAGC TCAAAAAGCC ATCTCAAAGG TAAAAGTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01003 Mean Expected Number 0.009 +strand -161 : -152 ACAATTAAGt AC RSP01134 Mean Expected Number 0.003 +strand -18 : -9 GTTCCAtACC Totally 2 motifs of 2 different REs have been found Description of REs found 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: arginase, putative |LOCUS: AT4G08870 |PROD: the same as GENE |complement(5646566..5648723) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.34 C - 0.14 1 ttgaatacac aaataccata tatatatata tatatatatt attcgtataa 51 agcttataat aaatatgtag ggtaaagatt ttaaacatgt tttaaacaag 101 tgttacaaat ttaactgata ccagcttcta aacttcacta agatatcaaa 151 gtcttatcat tttcttttag tatataagaa catacaatca aaaatgaata 201 ACTTATACCT CACTGACTTA CTACAAATCA GATATGTGGA AGATTGGGCA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: L-ascorbate peroxidase, chloroplast, putative |LOCUS: AT4G09010 |PROD: the same as GENE |complement(5777080..5779418) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.31 C - 0.17 1 ccaattcaaa aatattgggt attaaacttg caaataaaaa ttagtatgag 51 ttttttttgg gatttttaac cacaaaaaaa atctttgacc ttttaaaaaa 101 ctcttATTGA aaaaaaaaaa aggagttata tgatgaaacc aaatggaccc 151 atatgattgg gagatttgga taacagagaa tccacaaaag tgtatccttc 201 ACAAAACCAA AACACACTCT CCATTTTCTT CAGACAACTC TTTCTCCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.005 -strand -41 : -47 CCAATCA AC RSP00270 Mean Expected Number 0.004 -strand -7 : -17 TACACTTTTGt AC RSP00716 Mean Expected Number 0.005 +strand +2 : +10 CAAAACCAA AC RSP01013 Mean Expected Number 0.004 -strand +27 : +18 aAAATGGAGA AC RSP01621 Mean Expected Number 0.001 -strand -7 : -16 TACACTTTTG Totally 5 motifs of 5 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G09340 |PROD: the same as GENE |complement(5924599..5927632) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.28 C - 0.20 1 cattcaatac cgaaccaaaa taaaaccata ctaaaccatc cataatttgg 51 ataccagtac taagaaacca aatttttaaa aaccgaataa ttcaaataaa 101 aaccgaaccg aaatcacatg gttttgtaag agatcatttg aaaaaaataa 151 aaaatattcg ctcaacaatt ttgtttctct ataatcaatc accaatcagc 201 AAAATTCTAG GGTTTCAATT ATCTTCTCTG CGATTTGAAT GAACAAATCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00698 Mean Expected Number 0.006 -strand -107 : -117 TGAATTAtTCG AC RSP01017 Mean Expected Number 0.002 -strand -23 : -30 AGAAACAA AC RSP01509 Mean Expected Number 0.002 +strand -10 : -2 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATP synthase delta chain, chloroplast |LOCUS: AT4G09650 |PROD: the same as GENE |6100740..6101705 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.05 T - 0.27 C - 0.38 1 acacagatat cacaccaatc aaacaactcc acgtgtcgat tcctcactcc 51 ttctcaaacc acagcctaat ccttctgaaa actccacaca agataaacct 101 tctaatctcc accgtccatc taaccACAAT ccaaaatctc caccgtccat 151 tctcatctcc cccaaaaaac cttaccttct tcttcttctt cctctcctct 201 ATCGTCTTCG AGAAACCACA AATCTCTCTT TCTCTCAAAC TCTCTCAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00010 Mean Expected Number 0.007 +strand -171 : -166 CACGTG AC RSP00010 Mean Expected Number 0.007 -strand -166 : -171 CACGTG AC RSP00068 Mean Expected Number 0.003 -strand -164 : -173 GACACGTgGA AC RSP00188 Mean Expected Number 0.002 +strand -173 : -164 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -164 : -173 GACACGTGGa AC RSP00340 Mean Expected Number 0.004 +strand -173 : -164 TCCACGTGTC AC RSP00524 Mean Expected Number 0.002 -strand -165 : -171 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -164 : -173 GaCACGTGGA AC RSP00837 Mean Expected Number 0.004 -strand -80 : -89 AGATgGACGG AC RSP00861 Mean Expected Number 0.005 -strand +33 : +25 AGAAAGAGA AC RSP01035 Mean Expected Number 0.002 +strand -170 : -164 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -165 : -172 ACACGTGG AC RSP01274 Mean Expected Number 0.006 +strand -173 : -164 TCCACGTgTC Totally 13 motifs of 12 different REs have been found Description of REs found 10. Group RE: G-box /Group TF: TAF-1 /AC: RSP00010//OS: Catharanthus roseus /GENE: Str/RE: G-box /TF: TAF-1 ||Identical REs AC: RSP00134 RSP00302 RSP00390 RSP00657 RSP00726 RSP00786 RSP00815 RSP00957 RSP01471 RSP01532 RSP01533 RSP01534 RSP01749 RSP01770 RSP01782 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxidoreductase family protein |LOCUS: AT4G09670 |PROD: the same as GENE |complement(6107147..6109111) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.07 T - 0.38 C - 0.20 1 atttattaat aaaacaacgt ttataatctg gataaattta tcatcttata 51 tattaagaat tacaattttt atttaaaata gaaaaagatg tattttccaa 101 atgaaaactc aaaaacaggt agttttcaaa atctcccatt aACAATttat 151 ctcgtcttgt tgtaacaact tcacctattt cattcgttct ttatcaacaa 201 CACTCTCTCT CTTCTCTATC AACACTTTCT TTCATCTCTC GCCGGAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.003 -strand +12 : +4 AGAGAGAGA AC RSP01014 Mean Expected Number 0.005 +strand -103 : -94 CAAATGAAaA AC RSP01015 Mean Expected Number 0.005 +strand -103 : -94 CAAATGAAAa Totally 3 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: choline kinase, putative |LOCUS: AT4G09760 |PROD: the same as GENE |complement(6148755..6151396) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +249 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.09 T - 0.35 C - 0.24 1 actagtaaac cccccaaagt agttgatatc ttgtttgata gatttttcat 51 gcatataatg aacatttaaa ttttacaaaa caaaaccatt ttttctttat 101 ttgtttcttg gtcctctcaa atccaaccca ccaagacaaa gaaatagata 151 ttccctttct tatgtaaaga caaaagtcca taaatactct ctttcaacac 201 CTCTCTCACA CTCACCATGC AATTTTTCTT TCCTTGTGAC CAAGACTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00394 Mean Expected Number 0.008 +strand -38 : -32 TGTAAAG AC RSP00792 Mean Expected Number 0.001 -strand -90 : -99 CCAAGaAACA AC RSP00888 Mean Expected Number 0.004 -strand -154 : -162 AAAAATCTA AC RSP01017 Mean Expected Number 0.009 -strand -93 : -100 AGAAACAA AC RSP01470 Mean Expected Number 0.007 +strand -154 : -145 TCATGCATaT Totally 5 motifs of 5 different REs have been found Description of REs found 377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RPS18C |LOCUS: AT4G09800 |PROD: 40S ribosomal protein S18 (RPS18C) |6173712..6175146 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.38 C - 0.18 1 attctattaa actctgtcaa attccacggt ttaataaccc cctttataaa 51 agttgatcaa ctctgatata aactttttgt tatttatata agtgttccat 101 cgaaaataat attttaataa atattcatga agggtaaaat ggtctttaac 151 tatttcagta ttacgataac cctactaatg tgtaatatat ataaatcatt 201 GAAAAACCCT AGCAGACCTC TTTTGTGTTC TTCACTCTCC AGCGATCGTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT4G10030 |PROD: the same as GENE |complement(6269787..6273237) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.24 T - 0.20 C - 0.17 1 tatttaaggt ttgatacaag aaaaagagag atgtgagggt gtttagttag 51 gtgagaaact ctggaccgac caagtggtcg attcaagtct gtgcaaagcc 101 gacaaaaggg gcaaatctgt cattcactct gttttcaacc tgagattcac 151 cagaaacaaa aacatacggc ggagtaaaaa acaaaggcga cggagatacc 201 AAGAAAAAAA AAATACAGAG GAGGAAAAGA AGCACATTGT CGCCGTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.004 -strand -145 : -155 TCTCACCTAaC Totally 1 motifs of 1 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT4G10050 |PROD: the same as GENE |complement(6284447..6287287) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.18 1 aaacaaacac tactcttttc ccacaattga cgaccctttt tgttagtcat 51 attgacccgt tgaaagttga aaactgcatg gtgggtgaga caagtgatat 101 taaatcatat gggcctaaaa tggcccaaca agagataaaa gcccatacta 151 ttctacgtcc atcgaggtgt caccttccta ttgaattttg actgaaaact 201 GAAAAAAGCA AATTGTAGAA GAAGAAGAAG AAGAAGAGTG ATACTGAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.002 -strand -111 : -121 TCTCACCcACC AC RSP01184 Mean Expected Number 0.001 -strand -111 : -122 TCTCACCcACCA AC RSP01250 Mean Expected Number 0.001 -strand -12 : -21 AAAATTCAAT Totally 3 motifs of 3 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CNX7/SIR5 |LOCUS: AT4G10100 |PROD: molybdenum cofactor synthesis family protein |6308690..6309512 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +397 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.25 C - 0.22 1 aatttgggct tcccatttca ccagcaccag tatagcccga tggacttcgt 51 atagaaacca aaattggccg acaaaaaaaa aaaactaaac ccaaaatcca 101 ggttggatac gtcatcattt CCAATtgccc tagtcaaaga catggtgggg 151 gcattttagt aaaactaata gtttgagatg acgtagctca tgtgtgtggt 201 ATTCACCAGA GAAATGGTCG TCGCTGACTA CTAACCAGAG CCATCGGTGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.007 +strand -150 : -140 ATAGAAAcCAA AC RSP00314 Mean Expected Number 0.002 -strand -94 : -104 TCCAACcTGGA AC RSP00459 Mean Expected Number 0.005 -strand -64 : -73 TTGACTAGGg AC RSP00997 Mean Expected Number 0.004 -strand -85 : -94 GATGACGTAT Totally 4 motifs of 4 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G10140 |PROD: the same as GENE |6322453..6324660 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.31 C - 0.19 1 ccgaaacaat tctaatttgg gtatatgcta accgataatt gaaccggatt 51 tttcgaatcg ggtcgcttaa atcattttgg gatcttaaat gtttgggctt 101 gggcctgatt taaaaaaaTC AATacttgac ccgattacgc aaacccgttt 151 acggaaatac ccatcttcaa ctggttccgt gaagagacgc gcaaaagacg 201 ATCGATCAAC GTTCATTTGT GTGAAATCTG TTAACTTTTT CTGGGGAGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00597 Mean Expected Number 0.002 +strand +11 : +22 GTTcATTTGTGT AC RSP00735 Mean Expected Number 0.009 +strand -87 : -80 AAAAATCA AC RSP00872 Mean Expected Number 0.010 +strand +18 : +27 TGTGTGAaAT AC RSP01015 Mean Expected Number 0.008 -strand +19 : +10 CAAATGAAcG AC RSP01209 Mean Expected Number 0.007 +strand +35 : +44 CTTTTTCTGG Totally 5 motifs of 5 different REs have been found Description of REs found 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G10280 |PROD: the same as GENE |complement(6374742..6376107) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.35 C - 0.16 1 attatatata aataaaatat ttgttccgtg atgtattacg ggttaaatcc 51 ttagtggtga ttaaattcta aaaaaaaatt cagttaccgc cccaaaaata 101 atttttaggt taatctgcta attagttgcg ctaatttaag atttgcacca 151 attgcagttt tttttctcaa aacagtaaaa aaaaacttct ttgcagctct 201 CAGATTTGGT AAAGTTACCA ACTTCAAAGA ACTCGAAGAG ACCGTCTCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.007 +strand -31 : -20 AAAcAGTAAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G10300 |PROD: the same as GENE |6384458..6386185 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.20 T - 0.27 C - 0.14 1 agatgtgtgc aacttcgtaa ttacataaaa atgtggagca tttccgaata 51 agtccaaata tgtggagcaa ttcataaaat acccgaagat gtggagcact 101 ttcgTCAATa acaaaagatg tgagggcaat ttcataatta gacagaaatt 151 atctaactaa gccgtaacta ataactcaag agatgaggca tgaatggatc 201 ATATGCTATA CGATTATATT GGACAGAAAA TGAAAAATTT AAAATGGAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01000 Mean Expected Number 0.003 -strand -160 : -169 ATGCtCCACA Totally 1 motifs of 1 different REs have been found Description of REs found 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: LHCB5 |LOCUS: AT4G10340 |PROD: chlorophyll A-B binding protein CP26 |6408012..6409673 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +184 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.25 C - 0.19 1 tccaaatgtc ccaaggaatt tactgaaaac cccaactagg actgtgaaag 51 gcttgtggat gacatttaac agttgagatt ttcatgtgtt tgagattctt 101 gtaacacatt ttgctgtata ggtgaaagct tagccacaca aaaggagaaa 151 cagaggatat ggataaaata aattatccaa caaaaaccaa tctaaaagcc 201 ACATCAGCAT CCACAACCAA TCAGAGGACA GAATCATATT TCACATTTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00248 Mean Expected Number 0.002 +strand -3 : +7 GCCACaTCAG AC RSP00915 Mean Expected Number 0.004 -strand +8 : -2 GCTGATGTGG AC RSP01509 Mean Expected Number 0.002 +strand +16 : +24 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G10360 |PROD: the same as GENE |6420451..6422376 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.31 C - 0.19 1 ccaaaccaag tccttttagc cacgtctgta tttaaccaaa acaatctaca 51 gtacttattt ttggtacaca ataaatgctt cttttcaaaa atcaaccttt 101 ttttttaatt tccatataag aaaacagaga gagataataa aaaaaagctt 151 gaaactttga caaattaaca atctgagatt gtaattgagc gggaccagta 201 GTATCGAACG ACCCAGAAAA GAGATTTGAT TCCTTTCCTC ATCTTTGTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -92 : -77 TTTCCATATAAGaAAA AC RSP00080 Mean Expected Number 0.004 -strand -77 : -92 TTTtCTTATATGGAAA AC RSP00127 Mean Expected Number 0.005 +strand -13 : -8 AGCGGG AC RSP00248 Mean Expected Number 0.001 +strand -182 : -173 GCCACGTCtG AC RSP00819 Mean Expected Number 0.002 +strand -182 : -173 GCCACGTCTg AC RSP00864 Mean Expected Number 0.000 +strand -75 : -67 AGAGAGAGA AC RSP01034 Mean Expected Number 0.003 -strand -176 : -182 ACGTGGC Totally 7 motifs of 6 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G10380 |PROD: the same as GENE |complement(6431235..6434818) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +312 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.14 T - 0.46 C - 0.17 1 ttttctcttt ttattcacaa ccttagcttt gagaatcagt ctttgttcag 51 tgttaacgta ggcatatctc tctatgtgtg tgttgtcttt gctttttata 101 agattcggtt tctgagtttg gtttttattt cttaaggtgg ctatctttct 151 tgttcttctt cttaaaacgt agtaacagct ttataaaaat ctttcaaagc 201 ATGTAAATTT AAGTCCTAGC TCCATTTTCG TTTTCTTCTT CTCAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00354 Mean Expected Number 0.002 +strand -147 : -140 TAACGTAG AC RSP00593 Mean Expected Number 0.002 -strand -95 : -103 GAATCTTAT AC RSP00629 Mean Expected Number 0.006 +strand -16 : -9 AAAAATCT AC RSP01600 Mean Expected Number 0.007 +strand -9 : -2 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RBP37 |LOCUS: AT4G10610 |PROD: RNA-binding protein, putative |6557173..6559591 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.12 T - 0.42 C - 0.24 1 gatctagctc tgtccgaaaa ttgcagagcg tgatcttttc tctgtagtac 51 gaccgatttg ttttacttta tccaatcgtt ttaacttttt caccacggtt 101 aaaaaagtta aaatcagatc tctaaccatt ttctcaacga acctcgctaa 151 tatttctcat ttaatcaaaa tttaatcacc attaatcctt tggttgatta 201 CTCTTTTGTC CTCTTCTTCT TCTCTCTTCT CTTTCTTGGT GGCTCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.000 +strand -99 : -88 AAAAAGTtAAAA AC RSP00741 Mean Expected Number 0.000 +strand -99 : -88 AAAAaGTTAAAA Totally 2 motifs of 2 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: HpcH/HpaI aldolase family protein |LOCUS: AT4G10750 |PROD: the same as GENE |6618672..6619935 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.30 C - 0.20 1 gttgtagaac aagaaagaaa agtagaaacc ctaaattaag ttgggctaat 51 taaaaggctt cagaatctag tcgggctttt tgtaaaagcc ctaaatgata 101 ttttctcgtt tcctaagaaa aaacagcatg cagtctacgt ttctatcccg 151 aaaacgctaa taagtgagta ctaatttcgt tttggtcata cgaaagcaaa 201 AACACTTTGT CTTTTACCAC TTCTTCGATA CTTCCCAAGT TCACCGCAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 +strand -120 : -113 TGTAAAAG AC RSP00068 Mean Expected Number 0.005 -strand -58 : -67 GAaACGTAGA AC RSP00279 Mean Expected Number 0.002 -strand -167 : -175 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -175 : -167 AAACCCTAA AC RSP00441 Mean Expected Number 0.008 -strand +11 : +2 gACAAAGTGT AC RSP00860 Mean Expected Number 0.003 +strand -189 : -181 AGAAAGAAA AC RSP01086 Mean Expected Number 0.006 +strand -67 : -58 TcTACGTTTC AC RSP01303 Mean Expected Number 0.005 +strand -176 : -167 gAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G10910 |PROD: the same as GENE |6696708..6697451 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.33 C - 0.10 1 atatgttttt gtacatatta tagtttgtat atatgtgtgt ttctataagt 51 acaatataaa aaatcactta tagtctatcc ccgaagatat tcagttgaaa 101 tatttgctat ATTGCtggca ttttttataa gaattttatc tagaacgcaa 151 gagaacaaaa aaagaaaaaa attagaaaaa aaatgagtta taaaggatga 201 GGATAAGGTA ATAGTATTAT GCACAGCGCG GAGTATCACA TGCAAGTAGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.009 +strand +39 : +45 CATGCAA AC RSP01128 Mean Expected Number 0.005 +strand -109 : -93 CAGT-- +9 bp --TGCT Totally 2 motifs of 2 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: F-box family protein |LOCUS: AT4G10925 |PROD: the same as GENE |complement(6702766..6704618) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +339 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.32 C - 0.19 1 gctcaaagca atgaaattct taaaatgcct attgggccta acctgacgca 51 tttctttata tttttgaaaa ttgttaaacg acgacggatc tgttttctat 101 agtgactctg acgcacttgg ataaacatac atgtGCAATg actataatac 151 ccttgaaact tgaggctatt tcctacagtg acacattttg ataaacattt 201 GCGATGGTCA GTTACGGAGT TGGAGACAAA AGAGCTTCTG AATCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.001 -strand +33 : +23 tCTTTTGTCTC AC RSP00864 Mean Expected Number 0.001 -strand +51 : +43 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: lipase class 3 family protein |LOCUS: AT4G10960 |PROD: the same as GENE |complement(6713553..6718546) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +3178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.33 C - 0.24 1 tcgataactg taactctcgt atattcgtca caaccacacc atattccacc 51 acgtggcatt ttcattattc cattccctta attgaaaacg taataataca 101 tgcgttttta aattaagcct aagtttaatg taaccatatt attcacgtaa 151 ccatcaccga ttctatatat taaaaacctc caagcactct ttcgctggag 201 ATCACAAAGC AATCTAAAAA CATTTCTCTT GATCTTTTTC CTTTACCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.000 +strand -153 : -144 aCCACGTGGC AC RSP00073 Mean Expected Number 0.000 -strand -144 : -153 GCCACGTGGt AC RSP00153 Mean Expected Number 0.001 +strand -152 : -143 CCACGTGGCa AC RSP00175 Mean Expected Number 0.000 +strand -151 : -144 CACGTGGC AC RSP00682 Mean Expected Number 0.001 -strand -144 : -153 GCCACGTGGt AC RSP00718 Mean Expected Number 0.000 +strand -152 : -145 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -145 : -152 CCACGTGG AC RSP01034 Mean Expected Number 0.001 +strand -150 : -144 ACGTGGC Totally 8 motifs of 6 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: TOPP7 |LOCUS: AT4G11240 |PROD: |6847115..6849237 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +214 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.19 1 gaattaaaat tagttagtta tctttatttt tattataagt ttttgtccaa 51 aaccgatcct aacctaaatt gaaccaaatg aaaccacata actggatgca 101 gactaatcaa caACAATcgc acgtgcgtct gagaacttgt cacgtgacca 151 ctccgctcct ttctttggct tcgagttttg gatgatgaaa aataattatt 201 ACCGCGTTTA TTATAAAAGT TTCTAGGGTT TACGAAATTT GGGTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00709 Mean Expected Number 0.008 -strand -3 : -11 TAATTATTT AC RSP00881 Mean Expected Number 0.009 +strand -95 : -86 ATCAACAACa AC RSP01015 Mean Expected Number 0.007 +strand -126 : -117 CAAATGAAAc AC RSP01030 Mean Expected Number 0.010 -strand +24 : +17 AGAAACTT AC RSP01209 Mean Expected Number 0.008 +strand -42 : -33 CTTTCTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G11790 |PROD: the same as GENE |7090362..7093469 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.37 C - 0.16 1 aatcactcca aaatagaaat tatttttaca aacaaaaaaa tgaaaaagaa 51 tgcttattag tattttccac aattgaaatt taaaaagtat atttcccatt 101 atttttcacc taaaaaaaaa gcatctaaaa agaagtattt tttttgttct 151 tctcttttta aagttcgtat ttttttttaa atgtttatga agaaagacac 201 AAAAAACCCT AAATATAATT TCACGCAGCT GCCTCTCTTT TCTTCTTCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.009 +strand -183 : -171 AATTATTTTTAcA AC RSP00279 Mean Expected Number 0.003 -strand +12 : +4 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +4 : +12 AAACCCTAA AC RSP00405 Mean Expected Number 0.008 -strand -189 : -196 TTTGGAGT AC RSP01303 Mean Expected Number 0.006 +strand +3 : +12 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: zinc finger (AN1-like) family protein |LOCUS: AT4G12040 |PROD: the same as GENE |7214699..7215983 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +636 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.23 C - 0.23 1 tcgatgaaat taaaagcagt aatgtcacat aaacgtcggt cgtaacacat 51 ccaacggcta aaaccaatta aaaagcacgc caacactgac gacgttaaga 101 aaaaaacaaa gacaagaccg ACAATaaaaa aaaaaaaaga ggaaaccgtg 151 tctcgtggtt cgtaaaccaa accatataac aaaagcctca tttctctcat 201 CAACCATTGT TGCGTGTTTG GTTATCTCTT CTTTCTTCTC TCTCACCTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00263 Mean Expected Number 0.001 +strand -153 : -145 CATCCAACG AC RSP00422 Mean Expected Number 0.009 -strand -161 : -166 ACCGAC AC RSP01497 Mean Expected Number 0.003 -strand -143 : -152 GCCGTtGGAT Totally 3 motifs of 3 different REs have been found Description of REs found 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: Clp amino terminal domain-containing protein |LOCUS: AT4G12060 |PROD: the same as GENE |complement(7228001..7229935) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.36 C - 0.22 1 ataaaatttg tttttgactc tttcactcgt tgataggccc gtttaatgat 51 aagcaataag cccaaaacta aacttatttt gtgttgggtt tattcacatc 101 ttttaagccc atataagaaa gttttaagat ttataaaacg aatacgatat 151 cgtttcgaca atcgtcattc tccaggactc ttcttctcct ttcccaattt 201 GACGTTCTTT CATTTTTCCC GTTATCCAGA CACACTCGCG AAAATGGCGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 -strand -147 : -153 GCTTATC AC RSP00438 Mean Expected Number 0.005 +strand +46 : +51 GGCGGC AC RSP00807 Mean Expected Number 0.005 -strand +51 : +46 GCCGCC Totally 3 motifs of 3 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT4G12230 |PROD: the same as GENE |7284513..7287536 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.29 C - 0.17 1 atccaaatat tcttggaaat tgattcatac cgaaatctaa tcaaaacata 51 tgtgaaaata gatgttgatg agtcacatga tgaccattaa ttattacata 101 ctttacgtcg ttaactgaga atgactgctA CAATcacgga ccattcacgg 151 cgtcaacgtt gacaggcagt tgatatagga gactctgtta tctcgccgtt 201 ATATAATTCC TATCGAAAAT CAGAGCAAAA AAAAATAAAA AAGATTAATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.006 -strand -11 : -20 TAACAGAGTC Totally 1 motifs of 1 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: MutT/nudix family protein |LOCUS: AT4G12720 |PROD: the same as GENE |7487340..7490073 |SUPPORT | 10 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +373 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.16 1 gttaaaaatt gttgacatca ttttacttca acaatatgcg gtagagtttg 51 ctgctgccgt taggcgtaat gaaacaaata gactaacaca aagaataaac 101 gactacaatt tataattttt catttataaa ataaaataaa aATTGGaata 151 tattgtgcgg aattcctata tatcagaact cattgatctg ctgcttcttc 201 TGAAAGTTCT TAAGTGGTTC CACGATGTTT CCATTTTGTT CTGACTTCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.002 +strand -173 : -162 TCAAcAATATGC AC RSP00933 Mean Expected Number 0.006 +strand -92 : -80 TTTATAATTTTTc Totally 2 motifs of 2 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: photosystem I reaction center subunit XI |LOCUS: AT4G12800 |PROD: the same as GENE |7521319..7522667 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.14 T - 0.24 C - 0.17 1 gtttaaaact catgttaaaa gcatcttaaa gggaaatgaa atattaatac 51 aagaaacaaa tatatatatg taaagacata ttttcaccag cggtccaaaa 101 aaaaggatat attcacatat taaaagaaaa tATTGGggca aagtggataa 151 gataacatcc aatgagaata agacatatca aaattcatat ccctgagagc 201 CACAACAATC TTAAGAAACA GATCCTCTGT CTTGCCACAT CAGCAAACGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.008 -strand -52 : -58 TATCCAC AC RSP00248 Mean Expected Number 0.001 +strand +34 : +43 GCCACaTCAG AC RSP00683 Mean Expected Number 0.003 +strand -63 : -54 GCaAAGTGGA AC RSP00874 Mean Expected Number 0.008 +strand -177 : -167 TCTTAAAGGGa AC RSP00915 Mean Expected Number 0.003 -strand +44 : +35 GCTGATGTGG AC RSP01053 Mean Expected Number 0.005 +strand -55 : -47 GATAAGATA Totally 6 motifs of 6 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT4G12830 |PROD: the same as GENE |7531138..7533584 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.28 C - 0.20 1 ttgtttgtga ggctgttaat aattcatttt aaaaaaggga acttaatagt 51 tgtctctaat aggataagca tttaaaacgc agcgttttat tactaactta 101 cgtcATTGTc tcatgcaaat gacataagct agagaaaatc ttgattcctc 151 cgtcaaggca aaaccacata aagcctatct cctgccgcga aacaaccgtt 201 TAAACCACCA ATTCTCTCAT CCGTACCAAA GAACAAAAAA AAGATAAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.003 -strand -132 : -141 GCTTATCCTA AC RSP00069 Mean Expected Number 0.001 -strand -93 : -103 CAATGACGTAA AC RSP00112 Mean Expected Number 0.004 -strand -96 : -103 TGACGTAA AC RSP01437 Mean Expected Number 0.003 +strand -143 : -135 AATAGGATA AC RSP01655 Mean Expected Number 0.000 -strand -94 : -105 aATGACGTAAGT Totally 5 motifs of 5 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 1310. Group RE: GATA /Group TF: R-GATA /AC: RSP01437//OS: Oryza sativa /GENE: RSs1/RE: GATA /TF: R-GATA 1473. Group TF: HY5 /AC: RSP01655//OS: Arabidopsis thaliana /GENE: PID (At2g34650)/RE: C/A-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxidoreductase |LOCUS: AT4G13010 |PROD: the same as GENE |7600548..7602726 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.29 C - 0.24 1 agatcattat tggataatta aaatcactgg ccagtggaat taaagcccaa 51 acaagcccat gataactcaa aactagatca accagtaatg gcccatgatg 101 tcgtacttga ggtgacgtgg caaattctga attcgcgcac cggtagattc 151 ttttcttttt ccgtataaca cctttcaata cttgaggtga cgtggcaaat 201 TCACAACCAC TTTTTATATG ATATACCGCT TTTACCCCTT AAGCCTCTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -88 : -80 TGACGTGGC AC RSP00113 Mean Expected Number 0.000 +strand -13 : -5 TGACGTGGC AC RSP00208 Mean Expected Number 0.000 -strand -5 : -16 GCCACGTCAcCT AC RSP00208 Mean Expected Number 0.000 -strand -80 : -91 GCCACGTCAcCT AC RSP00214 Mean Expected Number 0.001 +strand -88 : -81 TGACGTGG AC RSP00214 Mean Expected Number 0.001 +strand -13 : -6 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -6 : -13 CCACGTCA AC RSP00215 Mean Expected Number 0.001 -strand -81 : -88 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -5 : -14 GCCACGTCAc AC RSP00248 Mean Expected Number 0.003 -strand -80 : -89 GCCACGTCAc AC RSP00887 Mean Expected Number 0.002 -strand -49 : -57 AAGAATCTA AC RSP01034 Mean Expected Number 0.006 +strand -86 : -80 ACGTGGC AC RSP01034 Mean Expected Number 0.006 +strand -11 : -5 ACGTGGC AC RSP01150 Mean Expected Number 0.008 +strand -185 : -175 AATTAaAATCA AC RSP01280 Mean Expected Number 0.000 +strand -90 : -80 GGTGACGTGGC AC RSP01280 Mean Expected Number 0.000 +strand -15 : -5 GGTGACGTGGC AC RSP01729 Mean Expected Number 0.000 +strand -90 : -79 GGTGACGTGGCA AC RSP01729 Mean Expected Number 0.000 +strand -15 : -4 GGTGACGTGGCA Totally 18 motifs of 10 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 819. Group TF: CCA1 /AC: RSP00887//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (1) /TF: CCA1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1537. Group TF: STF1/HY5 /AC: RSP01729//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G13195 |PROD: the same as GENE |complement(7662367..7663173) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +175 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.37 C - 0.22 1 actctgtccc atgtatatgt ctcacactct tcaaagatgc tcacataaaa 51 gggctcttta gtaatttgat acctcgtgca atatctgcca cacttttttt 101 ataagcaggt gtcccatttt tttcttcaaa ggctgaACAA Tctttgatgc 151 gatgttttcc aacaacatct ttattatacc attattagat taaagtgcgt 201 GTGTGGAAAT TTGAATATCT CTCTCTCTCA TAATTAGCTC ATCAAGCTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.009 +strand -65 : -58 AACAATCT AC RSP00756 Mean Expected Number 0.006 +strand -180 : -173 CTCACACT AC RSP00864 Mean Expected Number 0.004 -strand +28 : +20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +26 : +18 AGAGAGAGA AC RSP00872 Mean Expected Number 0.008 -strand -175 : -184 TGTGaGACAT AC RSP01597 Mean Expected Number 0.001 -strand -157 : -167 GTGaGCATCTT Totally 6 motifs of 5 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G13200 |PROD: the same as GENE |complement(7668146..7669197) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.34 C - 0.20 1 ctaaacgctt cgtttccgca tacccgcttt ttattttcat attttctttt 51 tgttatctat tttgactgaa agaggttatt gtttcggcct tttaaagccc 101 aaatatataa ttcatatata tgggcctttt aaagcccaaa tataatttat 151 aatccatatc gacggctcca aaacccaaaa ctcgttcacc ttcctgagac 201 GGTTTCAGTT CAGAGTAAGA GAGACAGAGA GAGAGATGAG TAGCTTCACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00837 Mean Expected Number 0.002 +strand -45 : -36 AtATCGACGG AC RSP00864 Mean Expected Number 0.000 +strand +26 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +28 : +36 AGAGAGAGA AC RSP01205 Mean Expected Number 0.008 +strand -113 : -104 CCTTTTAAAG AC RSP01205 Mean Expected Number 0.008 +strand -76 : -67 CCTTTTAAAG AC RSP01640 Mean Expected Number 0.003 -strand +29 : +20 CTcTGTCTCT Totally 6 motifs of 4 different REs have been found Description of REs found 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G13360 |PROD: the same as GENE |7775124..7778223 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +5 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.32 C - 0.23 1 tgctgatttt cgaacatgtt tttttttttt ctgtcaaata aaaataattt 51 aaaatcaatt acatggactc aaccgctcga atcaaatgga ccgagacaaa 101 ggcaacaaaa gtgactttac ggtctaaaga aacctctgaa gcagaaagag 151 tgtttcactt accatctcta tctccgtcgc tgatgactgt atcttcttca 201 CCACTATGAT CATCATCAAA ACTTTGTCTC ATCGCATCTT TTTCCCCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.003 -strand -153 : -164 AtTATTTTTATT AC RSP00140 Mean Expected Number 0.001 -strand -152 : -164 AATTATTTTTATT AC RSP00421 Mean Expected Number 0.007 +strand -111 : -105 ACCGAGA AC RSP00880 Mean Expected Number 0.004 +strand -104 : -95 CAAaGGCAAC Totally 4 motifs of 4 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein, predicted protein |LOCUS: AT4G13530 |PROD: the same as GENE |7866715..7868738 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.27 C - 0.30 1 agttgagcat atctgattag caaaagcggt tgaaggtcct ctacttctcg 51 gcccaccgta acaacataca ctgtcaatcc atatagttat cataaaccca 101 cacgtcaacg aaaccactct tttgacttca tcctctatCC AATcacacca 151 cgccacgtta acaccacgac ctagtgtttc tgtgatctcc acacagagaa 201 AGAAGCGTTT CGGTTCTGTT TTCGCCCCAA CACAAAGACT CCTTTTGTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.006 +strand -102 : -95 CACACGTC AC RSP00163 Mean Expected Number 0.004 +strand +41 : +51 CCTTTTGTtTC AC RSP00917 Mean Expected Number 0.008 -strand -92 : -101 GTTGACGTGT AC RSP00997 Mean Expected Number 0.008 -strand -92 : -101 GTTGACGTGT AC RSP01106 Mean Expected Number 0.001 +strand -51 : -41 ACGCCACGTtA AC RSP01258 Mean Expected Number 0.006 -strand -94 : -101 TGACGTGT Totally 6 motifs of 6 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATGRP2 |LOCUS: AT4G13850 |PROD: glycine-rich RNA-binding protein (GRP2) |8020948..8022217 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +362 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.30 C - 0.23 1 tcaaaaagat tggtaccaca agaactgatt tacacagact ctgctacgtg 51 tacaactatt ttacccttta gtacacagta aaaatataca cgtacacaca 101 ccagattaaa ttatttagcg agaaaaaaaa tcctgaaaag aaaatgagat 151 attttttagt gagctttgta tataaagccc cttaaaccct actccttggc 201 TTCATTCTAC ATTTCCTCTG CCTCTTTCTC AGATCACAAA ACCCTAATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.001 -strand -149 : -158 TaCACGTAGC AC RSP00279 Mean Expected Number 0.005 -strand +47 : +39 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand +39 : +47 AAACCCTAA AC RSP00680 Mean Expected Number 0.006 -strand -155 : -164 TAgCAGAGTC AC RSP01260 Mean Expected Number 0.002 +strand -157 : -150 CTACGTGT AC RSP01577 Mean Expected Number 0.008 -strand -82 : -91 GCTAAAtAAT AC RSP01604 Mean Expected Number 0.006 -strand -122 : -129 ACTGTGTA Totally 7 motifs of 7 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: HOG1 |LOCUS: AT4G13940 |PROD: |8054856..8057176 |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.12 T - 0.29 C - 0.38 1 gccacgtgtc caccctccca catcaccgtc cgatctaacc cacgacaagc 51 ttacaacacg ggtcataccg ctcgtgcagc gtgttccgtc atccacggga 101 ttacaacttc taccagatcc accaaaccct caaaACAATc tgaaccgttc 151 atttcatttt gacctcatct atatattctc tgtcactccc tttctcttct 201 CCTCGCACAC ACTTCTCTCT CTCTCTCTCT CTGCCTCCTT TCGGATTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -192 : -200 ACACGTGGC AC RSP00044 Mean Expected Number 0.003 -strand -190 : -200 GGACaCGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -200 : -191 GCCACGTGtC AC RSP00073 Mean Expected Number 0.002 -strand -191 : -200 GaCACGTGGC AC RSP00153 Mean Expected Number 0.007 +strand -199 : -190 CCACGTGtCC AC RSP00175 Mean Expected Number 0.001 -strand -193 : -200 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -191 : -200 GACACGTGGC AC RSP00524 Mean Expected Number 0.008 -strand -192 : -198 ACACGTG AC RSP00628 Mean Expected Number 0.007 +strand -67 : -60 AACAATCT AC RSP00864 Mean Expected Number 0.010 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.010 -strand +30 : +22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.010 -strand +28 : +20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.010 -strand +26 : +18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.010 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.010 -strand +22 : +14 AGAGAGAGA AC RSP01035 Mean Expected Number 0.008 +strand -197 : -191 ACGTGTC AC RSP01237 Mean Expected Number 0.005 +strand -34 : -25 aTCTATATAT AC RSP01255 Mean Expected Number 0.003 -strand -192 : -199 ACACGTGG AC RSP01283 Mean Expected Number 0.000 -strand +31 : +15 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +29 : +13 GAGAGAGAGAGAGAGAA AC RSP01505 Mean Expected Number 0.001 -strand -166 : -174 GATCGGACG Totally 21 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 43. Group TF: ASF1 /AC: RSP00044//OS: Triticum aestivum /GENE: H3/RE: hex3 /TF: ASF1 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1362. Group RE: NonaLS /AC: RSP01505//OS: Triticum aestivum /GENE: H1 (TH315)/RE: NonaLS /TF: unknown ||Identical REs AC: RSP01506 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G14000 |PROD: the same as GENE |8090812..8092662 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.36 C - 0.18 1 ttttagatta ttaattttgt taattattga taaaaaaaac tcaaataatg 51 tcatattttc tcttaattca aaagttaatt gtgtataatt tgattggttc 101 ccccaaaaga aaaattgatt ggtttagtga accgataaat CCAATctcgt 151 accgaccggt tcaatgggtt ttgtatttgc tcctctgtgc tctggcctct 201 ACACTTTGGA TAGCTGCCGC CGAAGTTTTG TGCAATGGCG ACGAAACCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00438 Mean Expected Number 0.007 -strand +21 : +16 GGCGGC AC RSP00807 Mean Expected Number 0.007 +strand +16 : +21 GCCGCC Totally 2 motifs of 2 different REs have been found Description of REs found 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RALFL32 |LOCUS: AT4G14010 |PROD: rapid alkalinization factor (RALF) family protein |complement(8092832..8093377) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.33 C - 0.22 1 taacatagag tggtcggaca taaatataca cacgtactct attaagtaaa 51 gcagtgtgtt aggtgaagtg cggtcccttc tagtgctgct cccactaagc 101 tttgtcttta caatgaggaa atcgtcTCAA Tgtggcattc catgcttatt 151 tattattata taaccaaaga ttcgtcttca caattcactc tcttcttctc 201 TCTTTAAGAC ACTTACAAAA TGGAGATAAA ACCCTCTAGG ATATTCTCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.002 -strand -33 : -44 TtTGGTTATATA AC RSP01013 Mean Expected Number 0.003 +strand +17 : +26 aAAATGGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G14100 |PROD: the same as GENE |8120715..8122406 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.16 1 gttcaaattg aaccaagaaa cactttcccc aatattgtta attttgcaaa 51 tacatttctg attgtagatt gagagattat acatcaataa tgagtttagt 101 agactaatgg actaaaatgt atgtttcgat gataACAATt tatgtagaat 151 ttaaaagaac tgtatactat atagtatttt aatttatctt ccgtgcacga 201 ACCAAAACTT CAGTACCACA CTGATACACA TGGCTTTTAG ACGACCACTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.005 +strand -188 : -179 CCAAGaAACA AC RSP01602 Mean Expected Number 0.004 -strand -127 : -134 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 60S ribosomal protein L36a/L44 (RPL36aB) |LOCUS: AT4G14320 |PROD: the same as GENE |complement(8242544..8243880) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.21 T - 0.41 C - 0.14 1 ttgtatctct aaacggctag tttttgtcca cgggccactg attattaaca 51 atttttattt tcggcaacta gaatatattt actttctttt aaaaaaggga 101 agtgagatgg gcctgacttt ttgattaagt taatgggctt tttgtgttta 151 tagaggccca atgtttgtag tattagggtt ttctcaaatg tctctcttat 201 AAGCTCTGTT ACTTTAGGTT TTTATTAAAG GTTTTGCGGC AGTGGAAGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.006 +strand -28 : -20 TTAGGGTTT AC RSP00369 Mean Expected Number 0.006 -strand -20 : -28 AAACCCTAA AC RSP00445 Mean Expected Number 0.003 +strand -110 : -101 AAAAAAGgGA AC RSP01190 Mean Expected Number 0.000 +strand -173 : -164 CCACGGGCCA AC RSP01207 Mean Expected Number 0.000 +strand -43 : -32 CCAATGTTTGTA AC RSP01642 Mean Expected Number 0.003 +strand -15 : -6 AAATGTCTCt Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor 1117. Group TF: LFY /AC: RSP01207//OS: Arabidopsis thaliana /GENE: AtCRC/RE: CL2 /TF: LFY ||Identical REs AC: RSP01212 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G14365 |PROD: the same as GENE |complement(8271460..8273733) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.10 T - 0.42 C - 0.22 1 aaccgagtcc agtcaactct gaactttctc cgacacttca ttgttcttga 51 aaaagtcttc aaagcaatag tttttttttt gtctttttga agcaattata 101 caaTCAATtc ctggctattg ccgcgttttt tcataatcta ttcctttact 151 tttccctatt tcttaactta aggcaagaac ttttctataa aatagatctt 201 GACTTTCTTC TTCTCCTATC TAAGTTCAAT TCATTTGATA TTCCTTCTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01210 Mean Expected Number 0.005 -strand -146 : -155 CTTTTTCAAG AC RSP01631 Mean Expected Number 0.000 +strand -144 : -134 CTTCAAAGCAA AC RSP01634 Mean Expected Number 0.000 +strand -144 : -134 CTTCAAAGCAA AC RSP01635 Mean Expected Number 0.001 +strand -144 : -134 CTTCAAAGCAA AC RSP01638 Mean Expected Number 0.001 +strand -144 : -134 CTTCAAAGCAA Totally 5 motifs of 5 different REs have been found Description of REs found 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1454. Group RE: TERE /AC: RSP01634//OS: Arabidopsis thaliana /GENE: At3g62160/RE: TERE /TF: unknown 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: enoyl-CoA hydratase/isomerase family protein |LOCUS: AT4G14430 |PROD: the same as GENE |complement(8304596..8305701) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.29 C - 0.20 1 aaaactaaaa acatgttaga tattagtacc attcaaggtc taaattatat 51 ttggtattaa atccaaatga aattatgttt gaccaaaaaa agagatctcg 101 tacacgccgg cccatgggcc tttacaacag ATTGAaccaa aatggaaaca 151 tagaccaatc aggataaggt atatttctct ctatatttgc acaattcaac 201 AACAACACGA TTTCTCACAC ATTTCAAGTT TTCATTATCA TCCAGAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand -115 : -106 AAAAAAGAGA AC RSP01209 Mean Expected Number 0.002 -strand -109 : -118 CTTTTTTTGG AC RSP01509 Mean Expected Number 0.001 +strand -47 : -39 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G14600 |PROD: the same as GENE |8376396..8378331 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +162 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.32 C - 0.18 1 agaggttcac gactaagtgt tctcactcca aagataatag aatgaacaca 51 gcttagagat gatctttctc tattatagtt gtaacaaact ctcgataaaC 101 CAATataatc tttaaccatt accggttcaa ttaaattttt ggttaaaaga 151 atctttaacc gtcgatagct ctccttactg atatgatcca acggttaaat 201 AAAACGTCAT TGTGTTTACG GATATAACTA GACTAAAACG CAGCGTTTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.003 +strand -119 : -108 TAACAAACTCTc AC RSP00405 Mean Expected Number 0.007 -strand -169 : -176 TTTGGAGT AC RSP01031 Mean Expected Number 0.009 +strand -53 : -46 AGAATCTT AC RSP01654 Mean Expected Number 0.007 -strand +11 : +2 AATGACGTTT Totally 4 motifs of 4 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PBD2 |LOCUS: AT4G14800 |PROD: 20S proteasome beta subunit D2 (PBD2) (PRCGA) |8500283..8502224 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.28 C - 0.25 1 gtcggcgact cagcaagaag cgggagagag aagaaaacga gaggttcctt 51 tttaatttac aaattaaccc ctaagctttt cctattactc tctcttacac 101 cctcctactt taaaaaatag aaatgtcccc ataacgttaa tatgtctaaa 151 atacccctga ctatattcta gaactaccaa atcaacccgt cttgttcgcc 201 AAGTCGCTTT GATCTAAAAA GCTCTTAAAC TATTCTTCCA GCGACCGGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.009 +strand -182 : -177 AGCGGG AC RSP00653 Mean Expected Number 0.001 -strand -169 : -179 TTCTCTCTCCc AC RSP00865 Mean Expected Number 0.000 +strand -178 : -170 GGAGAGAGA AC RSP01642 Mean Expected Number 0.007 +strand -80 : -71 AAATGTCcCC Totally 4 motifs of 4 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G14815 |PROD: the same as GENE |8505046..8505942 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.09 T - 0.28 C - 0.22 1 actcaaaaac tttatataat cacaaaaaat aattcaacaa acatatcctt 51 aaaccaaacg taatcatatt ctttcacaaa cttcaccata aggtgttgca 101 aaagttggtc atgcaaATTG Agccacatcc ttattttcgt ctttttctgc 151 ggcctcaact tcttatttat ttacgtaacc acaaaagaaa agactccaac 201 ACAAACCATT AAGCGATCAA ACAACTAAAT TAAAAAAAAA TCTTGAGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.007 -strand -177 : -188 TGTGaTTATATA AC RSP00483 Mean Expected Number 0.009 -strand -48 : -52 GCCGC AC RSP00961 Mean Expected Number 0.004 +strand -104 : -97 TGCAAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G14870 |PROD: the same as GENE |8517187..8517897 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.37 C - 0.23 1 tactcacaga ttcatcgtct ctgctttcgc cgatacgctc ctctggttac 51 tttctccgtc gccgtcgcca gagcattttt tatcctaaat ttaaattttt 101 tcaaataaat atttgggctt tataaggccc ataataATTG Tagcaactct 151 tactatactc attgctgtat ctgatcattt acttcagtct tcagatatct 201 GAATTATCCA CAAATCTAAA ATTGAGAAAA CTTAAAAAAG TTCCCAATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.009 -strand -172 : -178 CGAAAGC AC RSP00953 Mean Expected Number 0.004 -strand -61 : -69 CAATTATTA AC RSP01210 Mean Expected Number 0.007 -strand +40 : +31 CTTTTTTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ferredoxin family protein |LOCUS: AT4G14890 |PROD: the same as GENE |8520827..8521448 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.39 C - 0.20 1 aatttatttg ttcaaactgt tttggaaaaa atatttccct taattacgaa 51 tataattaaa attttaaaat tcattttatt agatcttggt taattcggtt 101 taatgcatta atgaatttcg gtttaagtcg gttttcggtt tttatgtccc 151 accactatct acaaccgatg atcaacctta tctccgtatt caccacaaac 201 AGTCATCACT CTCACTTGAC ACAAAAACTC TTTTGTCTCC GTCTCTCTGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.006 +strand +29 : +39 tCTTTTGTCTC Totally 1 motifs of 1 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT4G14900 |PROD: the same as GENE |complement(8521517..8523700) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.16 T - 0.31 C - 0.29 1 tctccgctca cgttagcaac aaccaatcgg gagtttggtg ctattgctgc 51 cgtcataaaa gtacgcaggc acacaaggcg cactctagat ggctgtcata 101 atcgcgccat agttacagac gccattacac gtgtcattct tctgactaat 151 ccacgtcatc ctcctcctct tatactattg ccatttttag gttttcctgc 201 AAAACAAACA AATCAGTCCT TCTTCTTCAC TTTTGTTACC TTCTTCTCTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.005 -strand -43 : -50 TGACGTGG AC RSP00215 Mean Expected Number 0.005 +strand -50 : -43 CCACGTCA AC RSP00524 Mean Expected Number 0.009 +strand -74 : -68 ACACGTG AC RSP00913 Mean Expected Number 0.008 -strand -41 : -50 GATGACGTGG AC RSP00915 Mean Expected Number 0.009 -strand -41 : -50 GATGACGTGG AC RSP00916 Mean Expected Number 0.008 -strand -41 : -50 GATGACGTGG AC RSP00997 Mean Expected Number 0.006 -strand -41 : -50 GATGACGTGG AC RSP01256 Mean Expected Number 0.003 +strand -74 : -67 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -67 : -74 ACACGTGT AC RSP01275 Mean Expected Number 0.008 +strand -51 : -42 TCCACGTCAT Totally 10 motifs of 9 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: acid phosphatase survival protein SurE, putative |LOCUS: AT4G14930 |PROD: the same as GENE |8538582..8541895 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +245 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.38 C - 0.08 1 aaaattattg gatgggatgt gtacacgaaa catgtgaaaa tggaataaga 51 ttttttttga aagttatttt tcttttatat tcgcattatt acaaaaatat 101 attagtgaat aataaatgac tagATTGAct gtttcattta tttaaagaca 151 acattgtggt caagacaaca ttggaaatta cataatttaa ttcatataaa 201 CAATTTTATG AATATATTAA AATAAAAATA GTTATTATTA TTATGAAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01469 Mean Expected Number 0.005 -strand -164 : -173 TCACATGTtT AC RSP01757 Mean Expected Number 0.001 +strand -42 : -35 GTCAAGAC Totally 2 motifs of 2 different REs have been found Description of REs found 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 60S ribosomal protein L27 (RPL27C) |LOCUS: AT4G15000 |PROD: the same as GENE |8571829..8572485 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.20 T - 0.22 C - 0.20 1 cgaacgtaag aaaaaaaaaa aaggaaaact agaattagta tgacccaata 51 actgaagcta ggtttaccag gccgtgtgat aagaatataa agcccaaatt 101 aaaaatgggt ctaacctaaa ggcCCAATaa ctgaaactag gttctctccg 151 catccatttt ctgcattact attaaagccg catttctcat agaatccgcc 201 ACTTAGGGTT CATAGCAGCC AGAGAGAGAG ACAAGTGAGA GGGATCTACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00048 Mean Expected Number 0.000 -strand +7 : -5 CCTAaGTGGCGG AC RSP00397 Mean Expected Number 0.001 -strand +3 : -5 AGTGGCGG AC RSP00646 Mean Expected Number 0.000 +strand -106 : -93 cAAATTAAAAATGG AC RSP00864 Mean Expected Number 0.003 +strand +21 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +23 : +31 AGAGAGAGA AC RSP01303 Mean Expected Number 0.001 -strand +12 : +3 TgAACCCTAA AC RSP01304 Mean Expected Number 0.001 -strand +12 : +3 TGAACCCTAA AC RSP01711 Mean Expected Number 0.008 +strand -172 : -163 CTAGAATTAG Totally 8 motifs of 7 different REs have been found Description of REs found 47. Group RE: ABRE A2; ABRE2 /AC: RSP00048//OS: Hordeum vulgare /GENE: HVA1 gene/RE: ABRE A2; ABRE2 /TF: unknown 379. Group RE: CDE /AC: RSP00397//OS: Nicotiana tabacum /GENE: RNP2/RE: CDE /TF: unknown 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: VQ motif-containing protein |LOCUS: AT4G15120 |PROD: the same as GENE |8634722..8635558 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.25 C - 0.21 1 tgagaaatgc aaatcgacaa catcatccaa acattaggcg acgcatcaac 51 gacaatcttt tttagatcca cgtgtcccta aaatgtaaaa acaaaccaaa 101 accaacggct gtgatttgtt agatggtctt actttgacca aatccaacca 151 attgacaagt tttaaaatgc tattaaaaac caaaagatga gagaaagtcc 201 ATAAATACTA AACAAGGGCT CCTCTTTGAT CTCTCCCATA ATAATAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 +strand -134 : -125 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 -strand -125 : -134 GACACGTgGA AC RSP00153 Mean Expected Number 0.001 +strand -133 : -124 CCACGTGtCC AC RSP00188 Mean Expected Number 0.002 +strand -134 : -125 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -125 : -134 GACACGTGGa AC RSP00340 Mean Expected Number 0.002 +strand -134 : -125 TCCACGTGTC AC RSP00383 Mean Expected Number 0.009 -strand -62 : -68 GGTCAAA AC RSP00524 Mean Expected Number 0.005 -strand -126 : -132 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -125 : -134 GaCACGTGGA AC RSP00716 Mean Expected Number 0.009 +strand -104 : -96 CAAAACCAA AC RSP01035 Mean Expected Number 0.005 +strand -131 : -125 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -126 : -133 ACACGTGG AC RSP01274 Mean Expected Number 0.003 +strand -134 : -125 TCCACGTgTC AC RSP01722 Mean Expected Number 0.000 +strand -135 : -124 ATCCACGTGTCc AC RSP01734 Mean Expected Number 0.008 +strand -134 : -128 TCCACGT Totally 15 motifs of 15 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: F-box family protein (FBL4) |LOCUS: AT4G15475 |PROD: the same as GENE |8845874..8849279 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.35 C - 0.22 1 taaatttgtt aattttggcg gaattttgat gccttttgtc gtatccattt 51 cgatattctg attgcttaag agcaaaagca aacattgata ccaaacgttt 101 gaagatttat ttaccatcat cgataaATTG Tttttacttt gctctccttt 151 ttttttaaac tcaaccatac acaaaaaaag cgacctcatc ttacccaccg 201 ATCCGCCATT ACAGACGAAG AAGAATTTCA ACTGCAATCT CTCTCTGAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -27 : -18 AAAAAAGcGA AC RSP00447 Mean Expected Number 0.008 -strand -58 : -67 AGCAAAGtAA AC RSP00847 Mean Expected Number 0.009 +strand -20 : -11 CgACCTCATC AC RSP00864 Mean Expected Number 0.003 -strand +46 : +38 AGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: photosystem II reaction center PsbP family protein |LOCUS: AT4G15510 |PROD: the same as GENE |8860614..8862656 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.41 C - 0.15 1 ttcaaggttg ttctcgttaa aaatatttcg aaataattta tttttctttg 51 aacatattta gttgattttt tatcagtaaa attatttgtt tttcctaatg 101 atatataact cttataaata aattaaataa tatatacata ctgtagttcc 151 aacgtatatc atcaatatct atccaaagtt ggattttctt ggttgacgtt 201 ACCCAACCAA AATTCTCAAT TTTCCCAGTG GATTACTCTT ACAGTCCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00135 Mean Expected Number 0.005 -strand -174 : -185 AATATTTTTAaC AC RSP00918 Mean Expected Number 0.003 +strand -9 : +1 GTTGACGTTA AC RSP00934 Mean Expected Number 0.005 +strand -147 : -138 ATATTTAGTT Totally 3 motifs of 3 different REs have been found Description of REs found 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G15545 |PROD: the same as GENE |8875918..8877755 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.18 T - 0.26 C - 0.14 1 caaaccggaa ttgtatttcc cataacacaa tagaatttag cgttgacata 51 atgaagcttt ttgtaataat acagtctcaa tcgatgaata ttgatatgta 101 aaatcaagaa ATTGTttggt ttagactcaa atttcggttt aatactaata 151 ccgggttata ccgtaaccgt atatgaactc ataaggtaca aaaaaaacac 201 AGAAAACGAG AAATGTCAGA GATAGAAGAA GAAGAAGAAG AAGGATCAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01602 Mean Expected Number 0.002 +strand -126 : -119 TCTCAATC Totally 1 motifs of 1 different REs have been found Description of REs found 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G15830 |PROD: the same as GENE |complement(8995126..8996614) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.33 C - 0.22 1 aaacgacgtc gtgtgaattg aacaataaac cagataaccg aatctaattc 51 atgtaaaccg aaccgatgct tgtgaccgtt ggagccaaaa ccttaccaac 101 ggtcttttgc tttttttcct cttgaatttt tgaatataaa atgcgaaaaa 151 ggtaacaaaa atttctcttt atattaagct tttcaacccc accattgatt 201 ATTATTCCCC TAACGAATTT CAAATCAAAA TCTCTCTCTT TCTCTTATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.004 +strand -78 : -68 TGAATTTtTGA AC RSP00249 Mean Expected Number 0.000 -strand -96 : -104 AGACCGTTG AC RSP00861 Mean Expected Number 0.004 -strand +43 : +35 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +39 : +31 AGAGAGAGA AC RSP00894 Mean Expected Number 0.008 -strand -73 : -80 AATTCAAG AC RSP01223 Mean Expected Number 0.000 +strand -125 : -117 CCGTTGGAG Totally 6 motifs of 6 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1129. Group TF: C-myb /AC: RSP01223//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: C-myb motif /TF: C-myb ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G15975 |PROD: the same as GENE |9052187..9053164 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.08 T - 0.23 C - 0.25 1 catttaacta aagatgataa taaagctcaa atcacacaaa actccaggaa 51 agaaatcaac caaacaaaac acatatgtaa gagagaaaca ataaaaaaaa 101 cagtcaacAT TGGtgtcttg gaaatcacaa gtgtcccata actcattctt 151 ctctctcaca cgccattact aaaaccccta aaatcttcat tcacttctct 201 AACCCAACAA CACACTATCT CTCATTTCTC TTCAAAAAAA AAAAAAAACC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.009 +strand -120 : -115 GAGAGA AC RSP00656 Mean Expected Number 0.008 -strand -79 : -84 TCCAAG AC RSP01469 Mean Expected Number 0.002 +strand -76 : -67 TCACAaGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 630. Group RE: Inr /AC: RSP00656//OS: Oryza sativa /GENE: PAL/RE: Inr /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: DNA-directed RNA polymerase II, putative |LOCUS: AT4G16265 |PROD: the same as GENE |complement(9202371..9204086) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.35 C - 0.22 1 agggtcaaat ttatttcgta ttgtcctctt cgtatttctt tatttgtatt 51 tttttctacc ccacaagtta aattctgata tgggccggcc catgggcttt 101 acgcatttAT TGTctaaatg cccgagaaag ttcatgaaat tacatccgat 151 tgccactacg cagtctttag tctttactag agcttgacct cttctctctc 201 ATGTCCGAGT GAACAAATCC CGCCAAAGAT ACGAAGAGAC TGATTGTGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.010 +strand -198 : -192 GGTCAAA AC RSP00559 Mean Expected Number 0.003 -strand -57 : -67 TGTAATTTCAt AC RSP00653 Mean Expected Number 0.007 +strand -9 : +2 TTCTCTCTCaT AC RSP00877 Mean Expected Number 0.000 +strand +19 : +27 CCCGCCAAA Totally 4 motifs of 4 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: integral membrane family protein |LOCUS: AT4G16442 |PROD: the same as GENE |complement(9271887..9273111) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 1 catatgttgg tcttttagta actagttgaa tctagaaact aatttgtcca 51 gccttaattt acacaaaact agtagcaaac ttattcgtta acacagtttc 101 aattttggtg atattttTCA ATaaaagcct aaggacccaa gcgatgtgaa 151 gtaaaagcat ggaactctct atttaaagcc ttaagccgag tgtggacact 201 ATTTCTCTTT AGTCTCTCTA CGGAACCTGT CTTCTTGTCT TGTCCAAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.004 -strand -77 : -88 TTATTGaAAAAT Totally 1 motifs of 1 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G16450 |PROD: the same as GENE |9280104..9280740 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.24 T - 0.29 C - 0.13 1 aatactatat cgtgcatgtt gttagatctg ctattttcga tcgtttggag 51 cttgattgac ttaaatgggc tcattcgggt ctgttatgag aaagcccaac 101 caagaaagtt tatgggtcaa agagaaaagc ctctagacga aagagaggat 151 ctcagcttct gttgaaatga atataaccta gaaattgatt ttgatcggaa 201 GAAGAAGAAA GAAGATAGAA TCAGAGATTT GTAGATTTTA TCGATCGAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01004 Mean Expected Number 0.001 +strand -142 : -133 ACTTAAATGG AC RSP01470 Mean Expected Number 0.007 +strand -191 : -182 TCgTGCATGT Totally 2 motifs of 2 different REs have been found Description of REs found 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G16500 |PROD: the same as GENE |complement(9301413..9302045) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.27 C - 0.27 1 tgagttgccg acgcaaatct agattggccc aaatcaacat atatgggccc 51 atttagtgct ctgctccact acgagtacac gtgacgggac aaccctcgtt 101 gactctttaa catgttgtac attatctttc gccacgtgga cttatccagt 151 tgtcaaatct gacggtgtaa aaagacaatt cactcgtcac cgcgtaacac 201 ACAATTGAGA TCTCCGTAAA TTTCTGGAAC TATCAGCCCA CATTCCAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.004 +strand -70 : -61 GCCACGTGGa AC RSP00073 Mean Expected Number 0.004 -strand -61 : -70 tCCACGTGGC AC RSP00153 Mean Expected Number 0.005 +strand -69 : -60 CCACGTGGaC AC RSP00153 Mean Expected Number 0.003 -strand -62 : -71 CCACGTGGCg AC RSP00175 Mean Expected Number 0.002 -strand -63 : -70 CACGTGGC AC RSP00189 Mean Expected Number 0.002 -strand -61 : -70 TCCACGTgGC AC RSP00340 Mean Expected Number 0.004 -strand -61 : -70 TCCACGTGgC AC RSP00682 Mean Expected Number 0.002 +strand -70 : -61 GCCACGTGGA AC RSP00683 Mean Expected Number 0.004 +strand -70 : -61 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.002 +strand -69 : -62 CCACGTGG AC RSP00718 Mean Expected Number 0.002 -strand -62 : -69 CCACGTGG AC RSP00784 Mean Expected Number 0.000 -strand -61 : -70 TCCACGTGGC AC RSP01734 Mean Expected Number 0.009 -strand -61 : -67 TCCACGT Totally 13 motifs of 10 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G16515 |PROD: the same as GENE |complement(9305278..9305786) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.33 C - 0.22 1 atacgataga tatgtatgtt gaatgtaaaa tatatttgaa taatagacaa 51 gagagaagat taaaaagaaa taaaagagaa gaggaacaag agcatgttat 101 gataatgaag gacccctccc cccacctgta tttaatgctt gtcttactct 151 ctttactctc ttctgcctac aaatactctc cttccctctt ctcttctctt 201 ACACCAATTA ACAACATTTC AAACTTTCTT TGTCCTGCTC TAGTCTCATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 +strand -131 : -122 AtAAAAGAGA AC RSP00597 Mean Expected Number 0.003 -strand +12 : +1 GTTAATTgGTGT AC RSP00935 Mean Expected Number 0.000 +strand -26 : -13 aCTCTCCTTCCCTC AC RSP01641 Mean Expected Number 0.003 -strand -149 : -158 TCTTGTCTAT Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 573. Group RE: GT-1/16 JJ1 /AC: RSP00597//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: GT-1/16 JJ1 /TF: unknown 864. Group RE: CT element /AC: RSP00935//OS: Pinus sylvestris /GENE: GS1a/RE: CT element /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: autophagy 8f (APG8f) |LOCUS: AT4G16520 |PROD: the same as GENE |complement(9306708..9308482) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +346 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.40 C - 0.18 1 cctcgtacac cttcagtaaa atggacggtt gagattccta tttcagtaaa 51 tagctaatat ctaccgtcag attctcactg aacagattaa gcatacaacg 101 tcagctgaag tgtttagatg ttaccataca ccatctgtag agaatctctg 151 accttatcgc ataatttttt aatgttttgc agaatttttg taggttgctt 201 ATTTGCTTTT TCTTTCATAT TTTTTCGTTA ATTGTTGTTG TTATCTTCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00284 Mean Expected Number 0.007 -strand -173 : -178 CCGTCC AC RSP00557 Mean Expected Number 0.000 +strand +1 : +16 aTTTGCTTTTTCTTTC AC RSP00713 Mean Expected Number 0.005 +strand -99 : -93 CAGCTGA AC RSP00713 Mean Expected Number 0.008 -strand -94 : -100 CAGCTGA AC RSP01068 Mean Expected Number 0.009 -strand -130 : -138 TCTGACGGT AC RSP01735 Mean Expected Number 0.001 +strand -132 : -124 AGATTCTCA Totally 6 motifs of 5 different REs have been found Description of REs found 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 533. Group RE: UN U2 /AC: RSP00557//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: UN U2 /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G16566 |PROD: the same as GENE |complement(9334648..9335980) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.31 C - 0.13 1 agaatggtta ttcggtggtg tagcgcaaat tttccatatt tttgaaaatt 51 aatacaagta aagactatac taaatcggaa cgtatatgag ttaagggttt 101 aacttaGCAA Taaaaatatt tgtggggtta aaatgaaaga tccaaatatt 151 tagtttcgga gaaaaaaaga ggcttttggc cggagaagac aactttccca 201 TTTCCACAAC TTGGAAATCG AAATCCATTT CGAATTTTGG TTAGCAGCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.006 -strand -81 : -92 AATATTTTTATT AC RSP00135 Mean Expected Number 0.004 -strand -81 : -92 AATATTTTTATT AC RSP00140 Mean Expected Number 0.003 -strand -80 : -92 AAaTATTTTTATT AC RSP00450 Mean Expected Number 0.002 -strand -156 : -167 TCAAAAATATGg AC RSP00746 Mean Expected Number 0.002 +strand -79 : -68 gTGGGGTTAAAA AC RSP00934 Mean Expected Number 0.002 +strand -55 : -46 ATATTTAGTT AC RSP00988 Mean Expected Number 0.000 -strand -16 : -27 CTCCgGCCAAAA Totally 7 motifs of 7 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: matrix metalloproteinase, putative |LOCUS: AT4G16640 |PROD: the same as GENE |complement(9367270..9368797) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +285 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.14 T - 0.33 C - 0.09 1 taatttgagt taagattaca gaaaaaaatc ttttgagtat gagaaaacca 51 atcaaattat tttattgaaa aacatttaat aacaaaataa atttagtatt 101 agtataatta aatatgtaaa attaaataat aaatacatca ttaatctata 151 aattaaaagt tgaagagctt acattaatta ttcagtggac acatggcaaa 201 TGTTAAAGTG ATGATGTGTC AATCATATGG AGAGAGTTGG CCAACTTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.005 +strand -153 : -147 CCAATCA AC RSP00850 Mean Expected Number 0.004 +strand +40 : +45 GCCAAC AC RSP00850 Mean Expected Number 0.006 -strand +41 : +36 GCCAAC AC RSP00915 Mean Expected Number 0.002 +strand +10 : +19 GATGATGTGT AC RSP00997 Mean Expected Number 0.001 +strand +10 : +19 GATGATGTGT AC RSP01013 Mean Expected Number 0.008 +strand +24 : +33 CATATGGAGA Totally 6 motifs of 5 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT4G16690 |PROD: the same as GENE |complement(9392169..9393491) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.33 C - 0.13 1 ttaaatattt ctttttacct taacatctaa ttttcttttt gtgtgcttta 51 caatatcttt tttacaaatt taaaatgaaa aaatggaaaa ttgagctggt 101 agcaaaatta aatacaaaca ttagaccctt ttgaaaaagg aaaaaaagga 151 tcgtacgtta cgttgttatc tccaaactgt ggaccaaaac tgcataacgt 201 GTTAAAAGGT GAGATAGTGT AAAAGCATTG ATCAAGATTC ATGCAATGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -68 : -74 CAAAAGG Totally 1 motifs of 1 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 60S ribosomal protein L15 (RPL15A) |LOCUS: AT4G16720 |PROD: the same as GENE |complement(9399987..9401404) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.35 C - 0.18 1 tgtcaaatga tgaaatattt ttttgtactc aatacaagtt ttgttttgtg 51 tgtgtgtctg ttcgtctgaa aaagaaatta aagggcctta atccgaattt 101 caaagcCCAA Tagtggaagt cttttatggg cctttattta ttaattcaag 151 tagcccaatt tcgtataata taaaggtcca ttggagataa aaccctaatc 201 TTCCACTTTA AATCAGGAAC AAACCCTTCA CTGCGCCAGT GTTGTGCGGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -3 : -11 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -11 : -3 AAACCCTAA AC RSP00894 Mean Expected Number 0.007 +strand -58 : -51 AATTCAAG AC RSP01303 Mean Expected Number 0.003 +strand -12 : -3 aAAACCCTAA AC RSP01600 Mean Expected Number 0.009 +strand -103 : -96 TTTCAAAG AC RSP01678 Mean Expected Number 0.006 -strand -176 : -187 CAAaAAAATATT Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT4G16790 |PROD: the same as GENE |complement(9451604..9453273) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.31 C - 0.20 1 tagcgattct gtagtcgctg tcaaataatc aaaataacgt tagaatagta 51 tttgaaacca aaaaaataaa gttaggaatg aattcacaca tcaacttcaa 101 ttccagattt tgttctctTC AATctcattt ttcttcttac aacaacaaaa 151 aaaaaaaaaa aaaaaaaaac agaacttaac ctctaagtct agcatttcca 201 CTAACTTATT ACTTATCTCT CTCTTCTTTC ATCACCAAAA TAAAGAACCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +24 : +16 AGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: nuclear RNA-binding protein (RGGA) |LOCUS: AT4G16830 |PROD: the same as GENE |9470458..9472613 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +182 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.12 T - 0.43 C - 0.19 1 gaccaaaatt tgctaaaata gattgttttt tttttttttt ttttggtagg 51 ggacactgga cagggagata atccaataat gaaatataaa cttttgttta 101 gatatgccgt cggtttaagt attctgataa tcaccaccgt ttttttgcct 151 attccaaatt tccacacatt ttattttcat ttcttaatat ttatttcctt 201 ATCATTTCTT TCTCTCACCA ACCAACAAGT TCTCCTTTCT ACCCATTTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.002 +strand +13 : +23 TCTCACCaACC AC RSP00627 Mean Expected Number 0.004 -strand +5 : -4 ATGATAAGG AC RSP00628 Mean Expected Number 0.008 -strand -174 : -181 AACAATCT AC RSP00792 Mean Expected Number 0.002 +strand +18 : +27 CCAAcCAACA AC RSP00838 Mean Expected Number 0.010 +strand -94 : -89 CCGTCG AC RSP00950 Mean Expected Number 0.001 +strand +14 : +24 CTCACCAACCa AC RSP01044 Mean Expected Number 0.000 +strand +13 : +24 TCTCACCAACCa AC RSP01083 Mean Expected Number 0.000 +strand +13 : +24 TCTCACCAACCa AC RSP01184 Mean Expected Number 0.001 +strand +13 : +24 TCTCACCaACCA AC RSP01435 Mean Expected Number 0.000 -strand -148 : -157 TCCCCtACCA AC RSP01454 Mean Expected Number 0.006 +strand +17 : +23 ACCAACC AC RSP01497 Mean Expected Number 0.001 +strand -95 : -86 GCCGTCGGtT Totally 12 motifs of 12 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 603. Group TF: GAF-1 /AC: RSP00627//OS: Pisum sativum /GENE: rbcS-3A/RE: GA-1 SITE /TF: GAF-1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 60S ribosomal protein L15 (RPL15B) |LOCUS: AT4G17390 |PROD: the same as GENE |complement(9714225..9715624) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.28 C - 0.20 1 gaatagagaa ctatcgtaac cgaatccaaa agactcttca cctaattctc 51 ttgcgttttg gctcctttta cataaattta taatgggcca tacagttcaa 101 ttagagatgt tttatgttgt agcgaaggcC CAATacataa agctaacgga 151 aaaaggccca ataagggctt tctttgtctg atggaaaccc taattcccat 201 GGAGCCATCT ATTTAAAGCA CAAACCTAAT TCGAAGAAAG AAGTGACTGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.007 -strand -129 : -136 TGTAAAAG AC RSP00229 Mean Expected Number 0.001 +strand -44 : -35 CCCAATAAGG AC RSP00279 Mean Expected Number 0.002 -strand -8 : -16 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -16 : -8 AAACCCTAA AC RSP00734 Mean Expected Number 0.002 -strand -141 : -148 CAAAACGC AC RSP01214 Mean Expected Number 0.004 -strand -35 : -44 CCTTATTGGG AC RSP01303 Mean Expected Number 0.005 +strand -17 : -8 gAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein, contains Pfam domain |LOCUS: AT4G17420 |PROD: the same as GENE |complement(9722451..9724652) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +197 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.22 T - 0.30 C - 0.17 1 taaaccggct attgaataag aaattttgta ccaaataaat ctagtgaaag 51 agggttggtt gagaagaaat gtaattatat taaaccggaa atgaaatttt 101 acgtcgatgt gtattttgtg aCCAATgaga tctctccacg taaacagatt 151 ccacgtgcag cttcaggccg atttaagcga atttaatctg tcgttttgtt 201 GGGTTCCCGT CGGTGACATC CACCGCGAAC ATTTCGACCG GAGTTTTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00280 Mean Expected Number 0.005 +strand -66 : -57 TCCACGTAaA AC RSP00974 Mean Expected Number 0.002 +strand -51 : -42 TcCACGTGCA AC RSP01713 Mean Expected Number 0.000 +strand -67 : -56 CTcCACGTAAAC AC RSP01734 Mean Expected Number 0.008 +strand -66 : -60 TCCACGT AC RSP01734 Mean Expected Number 0.008 +strand -51 : -45 TCCACGT Totally 5 motifs of 4 different REs have been found Description of REs found 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1521. Group TF: STF1/HY5 /AC: RSP01713//OS: Arabidopsis thaliana /GENE: PIN1 (At1g73590)/RE: C/A-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: palmitoyl protein thioesterase family protein |LOCUS: AT4G17480 |PROD: the same as GENE |complement(9745018..9746978) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.30 C - 0.18 1 attttctgaa agttttcaaa taatttgttt aacctttctt taaagtttca 51 agtcaatgcc gacaaagaaa aaaaaacaaa gaaaattatg ccacagaaga 101 aatttagatg agtaagatca gtagatacaa aacaccaacc accaagtaat 151 aaattctctt ccattttatg actaaagcac aaaaaattag ataaatctgt 201 ATCAAACGTA AACTTATTGC TTTCTTCCTT CTGGTAGTTC CCCAAAACTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.007 +strand -143 : -138 GCCGAC AC RSP01755 Mean Expected Number 0.003 +strand -65 : -58 CAACCACC Totally 2 motifs of 2 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: nuclear RNA-binding protein, putative |LOCUS: AT4G17520 |PROD: the same as GENE |9771343..9773605 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +166 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.38 C - 0.19 1 tcgtaggatt tagaatggaa aaccttttgg aataattcac caatttacaa 51 ttcattttat gattttgcca tcacaaacga catcagagta aatatgacta 101 acgggcccgg cCCAATaatt caagattagt tttttttaag gatttctagg 151 gtttttactt tttagtatat tatcttcttc tctctctaac cctcagttct 201 GTTAAGTACT TGGCTTCTAA CAAACGCTGT CTGAATCATA TTTCGATTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 -strand -38 : -49 AAAAAGTAAAAA AC RSP00064 Mean Expected Number 0.002 +strand +5 : +14 AGTACtTGGC AC RSP00864 Mean Expected Number 0.002 -strand -14 : -22 AGAGAGAGA AC RSP00894 Mean Expected Number 0.006 +strand -84 : -77 AATTCAAG Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ribosomal protein L19 family protein |LOCUS: AT4G17560 |PROD: the same as GENE |9780292..9782194 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.31 C - 0.19 1 tggtgggccc aaattatagg tttatgtaat cataataaga ctgtgtcatt 51 agccgactct tttattgata tttttataaa tcatagtact atctatttat 101 attaatATTG Atatactaaa ggcccacaat aacaaacggc ccataaagaa 151 aattcacacg tgcgatggca tacgtgtgcc aaaataggaa gcgaaaagca 201 GATAAGGCTC TTTTCCACTG TCTTCCCTCC ATTTTCTCCG AGTAACTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 -strand -37 : -46 CGCACGTGTg AC RSP00157 Mean Expected Number 0.007 +strand -131 : -120 ATTTtTATAAAT AC RSP00157 Mean Expected Number 0.007 +strand -106 : -95 ATTTATATtAAT AC RSP00157 Mean Expected Number 0.007 -strand -95 : -106 ATTaATATAAAT AC RSP00157 Mean Expected Number 0.007 -strand -120 : -131 ATTTATAaAAAT AC RSP00524 Mean Expected Number 0.009 +strand -45 : -39 ACACGTG AC RSP00680 Mean Expected Number 0.008 -strand -137 : -146 TAAaAGAGTC AC RSP01032 Mean Expected Number 0.009 +strand -22 : -13 CCAAAATAGG AC RSP01033 Mean Expected Number 0.006 -strand -13 : -22 CCTATTTTGG AC RSP01152 Mean Expected Number 0.001 +strand -46 : -37 CACACGTGCg AC RSP01288 Mean Expected Number 0.004 +strand -31 : -24 ATACGTGT AC RSP01727 Mean Expected Number 0.000 +strand -47 : -36 TCACACGTGcGA AC RSP01727 Mean Expected Number 0.000 -strand -36 : -47 TCgCACGTGTGA Totally 13 motifs of 9 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1535. Group TF: STF1/HY5 /AC: RSP01727//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (2) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CKB2 |LOCUS: AT4G17640 |PROD: casein kinase II beta chain, putative |9825210..9827285 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +241 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.17 T - 0.35 C - 0.27 1 ttgtgattca aagattttaa actgggtcca agcagaaagc gagtctaaca 51 tgggccgggt ctgttttaaa ctgggtccaa gccttctaat cttatcacgt 101 gagcgtcacg tgctctcttt ttctctctct ctctctctcc ctctggctga 151 cgaatcaccg gagaacccaa tttgtttcat tcctttcccg ttttgccctt 201 CCCTGTTCTT TTATTCTTTT CTTATCTACA AAAAAAACTT CGAGCAAGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.006 -strand -63 : -71 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -65 : -73 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -67 : -75 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -69 : -77 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -71 : -79 AGAGAGAGA AC RSP00865 Mean Expected Number 0.005 -strand -61 : -69 GGAGAGAGA AC RSP00940 Mean Expected Number 0.004 -strand -36 : -45 TTCTcCGGTG AC RSP01233 Mean Expected Number 0.004 +strand +43 : +49 AGCAAGA AC RSP01283 Mean Expected Number 0.000 -strand -62 : -78 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -64 : -80 GAGAGAGAGAGAGAGAA AC RSP01283 Mean Expected Number 0.000 -strand -66 : -82 GAGAGAGAGAGAGAaAA Totally 11 motifs of 5 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: aromatic-rich family protein |LOCUS: AT4G17650 |PROD: the same as GENE |9827532..9829668 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +230 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.33 C - 0.22 1 atgattttga tgtcagttcc atccggatac aattgttcca taaagcccat 51 tgggcccaac aatccacaag gccaaccaaa ttcgattata ttaaaagttt 101 cggcccttta taaatcaaca tgtagctttc tttgaccagt gaacaagaaa 151 aggtttctcc tttttaattt aggtgtatag gtgtgtgctc ctgcttgcat 201 ATAGATTACG TAAGAGTCTC TCTCTCTCTC TCTCTCTGGA AGAGGGCCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.008 -strand -48 : -54 CCTTTTC AC RSP00864 Mean Expected Number 0.002 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +31 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +29 : +21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +25 : +17 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +36 : +20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +34 : +18 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +32 : +16 GAGAGAGAGAGAGAGAc Totally 11 motifs of 3 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT4G17720 |PROD: the same as GENE |complement(9862459..9864676) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.32 C - 0.19 1 aattagatta aggattatga tagattagtc cagaatttaa tgaataaaat 51 ctctagatag aactttacgt gactaaaaag ggtcaaaagc aaaagaagtt 101 taaaattagg actctttttt aatcatcgca cgtgagaagg ttccgaccat 151 atcacgtgcc aaacccgaat aagactcgtt tttccaaggc gtttaaaatc 201 AGGTCCCACT TTTTTCTTTT ATTTTTCACT CTTCTTCACA TCAAATCCGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00253 Mean Expected Number 0.001 +strand +44 : +51 AATCCGCG AC RSP00966 Mean Expected Number 0.001 -strand -41 : -50 GGCACGTGAT Totally 2 motifs of 2 different REs have been found Description of REs found 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G17960 |PROD: the same as GENE |9970859..9972468 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +307 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.22 T - 0.28 C - 0.14 1 ttgcattgaa aaatgaaaac acttacggaa actaatgaac ttggaagcaa 51 ttgaccaaaa gtataattat tggtcaggtg ggcttttatt aatgggctta 101 actctcacta atgtagccca ctagtgaaat gtaATTGTgg taaataagaa 151 tttaccgctc gttaatggag aagaagaagg gttagatttg gaaagtagag 201 AAATGAGCAA AAGCAAGAAG AAGAAGATTC TCTCTTTGAT CCACTTTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -136 : -146 TAtACTTTTGG AC RSP00467 Mean Expected Number 0.003 -strand -144 : -153 TGGTCAATTG AC RSP00468 Mean Expected Number 0.001 -strand -143 : -153 TTGGTCAATTG AC RSP00743 Mean Expected Number 0.000 -strand -41 : -52 GAGcGGTAAATT AC RSP01031 Mean Expected Number 0.008 -strand +31 : +24 AGAATCTT AC RSP01482 Mean Expected Number 0.001 +strand -153 : -143 cAATTGACCAA Totally 6 motifs of 6 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 705. Group RE: box 3 /Group TF: GT-1 /AC: RSP00743//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 3 /TF: GT-1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G18330 |PROD: the same as GENE |10126590..10128745 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.30 C - 0.19 1 ttgggccgta ttgggtgcta atggttttac taataataag aatgggccta 51 gttaatcata aggcaatgaa aaaaaggttt acaaaaccct acatttttta 101 ccttccacgt gtaaacttct tccCCAATct tacaaatctt taactgtcat 151 cgagcgagct caacattttt cggacaacaa agtgtaagag actgattaaa 201 CAAAATCGAG ACTTTATAGT ACTCAGGTTT GTCGGAATCG ACTGAGTATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.003 +strand -97 : -88 TCCACGTGTa AC RSP00441 Mean Expected Number 0.010 +strand -25 : -16 AACAAAGTGT AC RSP00524 Mean Expected Number 0.009 -strand -89 : -95 ACACGTG AC RSP00974 Mean Expected Number 0.002 -strand -88 : -97 TACACGTGGA AC RSP01255 Mean Expected Number 0.002 -strand -89 : -96 ACACGTGG AC RSP01734 Mean Expected Number 0.009 +strand -97 : -91 TCCACGT AC RSP01776 Mean Expected Number 0.006 -strand -54 : -64 ACAgTTAAAGA Totally 7 motifs of 7 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: TCP family transcription factor, putative |LOCUS: AT4G18390 |PROD: the same as GENE |complement(10162964..10165573) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1253 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.31 C - 0.18 1 aaacaaacga aaatatcaaa taatttttct cacctgaaat caaattactg 51 aggatgataa tttaatacag atattttgta gaggaccgtg gcaattccgt 101 gaataagtaa tgtaatgaag ggcaaaaatg gaaataaaat caaagtttat 151 gcccaatatc tctctcccca tctgatgatc actcctttaa aatcaccatc 201 AAAGAAATTC CAATTTTCTC GGATTTTTAT TTCTTATATA CAAATCCCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.003 -strand -175 : -188 AAATTATTTgATAT AC RSP00865 Mean Expected Number 0.000 -strand -34 : -42 GGAGAGAGA AC RSP01190 Mean Expected Number 0.000 -strand -110 : -119 CCACGGTCCT Totally 3 motifs of 3 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G18395 |PROD: the same as GENE |10169455..10169941 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.31 C - 0.18 1 cccatgttaa gtttcggttt ataactttgg tttgtttggt ttaaatgttc 51 agactagttt cctttatatg tggtttaaaa gtggaaagtc tccaaaaaat 101 tgaaggcctt tccgatagtt caggctaaat agaaggaatc accggtcgtc 151 taaaacaagg gaagatattt aaactcatca gactctccca ccatttaaag 201 ACTACTACGA ATATGGAGAC AAGGTTTCCA AATGTTGCAA AAATCACCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.005 +strand -16 : -10 CTCCCAC AC RSP01167 Mean Expected Number 0.005 -strand -30 : -38 TAAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G18400 |PROD: the same as GENE |complement(10169877..10171268) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.14 T - 0.31 C - 0.11 1 atagtttttt ttccctcagc gaaataaaca atgataaatt atatgaaaga 51 aattaaaata taatagtatc actatttgat aaaatgacat tataaagagc 101 ttttaaaact tttttaacaa aacggaaata aataaatcac agtggaaaat 151 agcaataagg agattttgta tttacttcag ctgactttaa taaaataaaa 201 ATCTCTGTGG GAAAAAAATT TCTTGAAACT TCTTCAATGG CGGAAGAAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00713 Mean Expected Number 0.003 +strand -23 : -17 CAGCTGA AC RSP00713 Mean Expected Number 0.002 -strand -18 : -24 CAGCTGA AC RSP00749 Mean Expected Number 0.008 +strand -38 : -27 ATTTTGTAtTTA Totally 3 motifs of 2 different REs have been found Description of REs found 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SNI1 |LOCUS: AT4G18470 |PROD: |10192920..10195673 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.41 C - 0.18 1 ttatatatat ttttatgaat tattataacc aactaatatt gtctctattg 51 gttctaagtt caaacttcta accttcgagg gccgggttca aattccagta 101 agtgatttat tttttgctaa caattctctt atggcgggaa aATTGActtc 151 tgtcgagaat tagggtttct acaaatcttt ctccgttcta atttcggatt 201 AAGATTTCAA TCTCTCCTTC TCGTTTTCTT CTTTGGTGCT GCTGAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.000 -strand -60 : -67 TTTCCCGC AC RSP00279 Mean Expected Number 0.003 +strand -41 : -33 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand -33 : -41 AAACCCTAA AC RSP01303 Mean Expected Number 0.005 -strand -32 : -41 gAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G18580 |PROD: the same as GENE |complement(10234421..10236056) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +521 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.26 C - 0.16 1 ctagtctctg gattgacgaa tgagaggaga agataggagc gaggtcgaga 51 aattaatagt gttaaaccga accggtttgt tggaagctga accgctcgag 101 attggtttaa tcagagacac gtcagccaac ataaattaAT TGGaaaaggt 151 ttagaaaagg gaaacaaaat aaaaagtaaa taatccctat ttatatcgct 201 AATAAGATTA CTGTTCATCG CTAATCTCTA GTTTTCGCCA CCGCTGATGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 +strand -30 : -19 AAAAAGTAAAtA AC RSP00248 Mean Expected Number 0.002 +strand -85 : -76 GaCACGTCAG AC RSP00377 Mean Expected Number 0.004 -strand -94 : -103 AACCAATCtC AC RSP00434 Mean Expected Number 0.000 +strand -193 : -181 CTGGATTGAcGAA AC RSP00997 Mean Expected Number 0.002 -strand -75 : -84 GCTGACGTGT AC RSP01127 Mean Expected Number 0.006 -strand +13 : -4 CAGT-- +9 bp --AGCG AC RSP01258 Mean Expected Number 0.003 -strand -77 : -84 TGACGTGT Totally 7 motifs of 7 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 414. Group TF: TFIIIA /AC: RSP00434//OS: Arabidopsis thaliana /GENE: eEF-1beta/RE: TFIIIA-box /TF: TFIIIA 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1046. Group TF: ZPT2-2 /AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 1 /TF: ZPT2-2 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: dual specificity protein phosphatase-related |LOCUS: AT4G18593 |PROD: the same as GENE |10237583..10238847 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +582 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.26 C - 0.18 1 gacgaaaatg ttcaaggaat tttgcagatt agtaatgttt tctagaattt 51 tagattgttt ttggttcaca caatgacaca gttttgaaga aaagacctta 101 gcccacggcc cagtccaaaa tttttaaacg acagcgttaa gaactggtcc 151 ggttaaaccg ggatttagcc attatggaag aatcataaga caaaacctaa 201 ACTTAAACCG AACAGATTTG TCACGAAGAA GAAATCAGTG TAGCAGACAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.010 +strand -7 : +3 AACCTAAaCT AC RSP00628 Mean Expected Number 0.006 -strand -142 : -149 AACAATCT AC RSP01190 Mean Expected Number 0.001 +strand -98 : -89 CCACGGCCCA AC RSP01767 Mean Expected Number 0.005 -strand -75 : -83 TAAAAATTT Totally 4 motifs of 4 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 1101. Group RE: C-box /Group TF: C factor /AC: RSP01190//OS: Nicotiana tabacum /GENE: Adhl/RE: C-box /TF: C factor 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: BIN2 |LOCUS: AT4G18710 |PROD: shaggy-related protein kinase eta / ASK-eta (ASK7) |10296284..10299373 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +201 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.20 T - 0.25 C - 0.18 1 ttagacctta aaccaaacga atacatgatt caaatttgac cgacaagtac 51 atgatgcctt ccctttgatc acgaaatttc cacaaagagt ccgtgtctgc 101 gtaattaacc agcaatttca agggtgttta cgtaATTGTa gcttaacaaa 151 taaaaaacac gaaagaagat ggcgaagaaa acggaaagta gtagatagat 201 AAAGAAAGAG AAAGAGAAGA GCTGGATTCA CATGGTCTTG TTCTTTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.001 -strand -63 : -73 CAATTACGTAA AC RSP00383 Mean Expected Number 0.009 -strand -160 : -166 GGTCAAA AC RSP00861 Mean Expected Number 0.005 +strand +3 : +11 AGAAAGAGA AC RSP00861 Mean Expected Number 0.005 +strand +9 : +17 AGAAAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G18890 |PROD: the same as GENE |10352633..10355566 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +152 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.30 C - 0.21 1 caaaatgtaa acacaaactg tgtcgcattt cgattttcct gctttattaa 51 aaaagcctga gcacgtgtta acacatatgg gacatccttg taaattacaa 101 catactttaa gggtaatttc gtcttttcAC AATcagactt cttttttctt 151 caccctgtta agtgcttctt catttattac tccaccagaa aaaactcaga 201 ACCAGAAAAA GGAACAAAAC AAAAATAAAG CGCGAAATTA GTTTTCACCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00111 Mean Expected Number 0.001 -strand -116 : -124 ATGTCCCAT AC RSP00524 Mean Expected Number 0.006 -strand -133 : -139 ACACGTG AC RSP00817 Mean Expected Number 0.002 -strand -132 : -141 aACACGTGCT AC RSP00943 Mean Expected Number 0.008 +strand -79 : -69 TCtTTTCACAA AC RSP00978 Mean Expected Number 0.002 +strand -141 : -132 AgCACGTGTT AC RSP01014 Mean Expected Number 0.008 -strand -25 : -34 tAAATGAAGA AC RSP01596 Mean Expected Number 0.008 -strand -69 : -79 TTGTGAAAaGA Totally 7 motifs of 7 different REs have been found Description of REs found 109. Group RE: AuxRE /AC: RSP00111//OS: Pisum sativum /GENE: PS-IAA4/5/RE: AuxRE /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G18910 |PROD: the same as GENE |10366070..10368392 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +152 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.35 C - 0.15 1 attacatatt ttcaaaaatt caatattttg taccaaaatc tggtgagaac 51 ataaaaacag agatatatgt tttctcttga caaaaaaaaa acagagagat 101 ATTGTagttt tcttaataga gccagcaatg gtcaaatata tcatgtgaaa 151 tagtttctaa aatacatcat ccttttcttc ttaattaata aaatagtcaa 201 ATAAAAAATC GTCTCCAATC TTTTTCTCTC TCTGGATTTG CCAATAAATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.009 +strand -71 : -65 GGTCAAA AC RSP00615 Mean Expected Number 0.005 -strand -154 : -159 CTCACC AC RSP00864 Mean Expected Number 0.001 -strand +33 : +25 AGAGAGAGA AC RSP01250 Mean Expected Number 0.005 +strand -186 : -177 AAAATTCAAT Totally 4 motifs of 4 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ankyrin protein kinase, putative |LOCUS: AT4G18950 |PROD: the same as GENE |10375375..10378400 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +321 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.17 T - 0.31 C - 0.28 1 agtcgtttaa ccgaatcgaa tccaaacacg tgcgggttca tccacaccgt 51 taagtttcat ctgacgctgt ttacatcaac ggctaagatt tgttattctc 101 tcttttcgtc aacgcATTGT taccgtggcg ccagatatga cgtctatata 151 cgcgcataaa atcacgtgac aaacacgcgc tcaacaaaag ctggttcttc 201 TCCTTTTCCT CTCCGATGAC TTTCTTACCG ACCAGCTTAG TCTTCTCCAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.003 -strand -167 : -176 CGCACGTGTt AC RSP00366 Mean Expected Number 0.001 +strand +17 : +28 TGACTTTCTtAC AC RSP00523 Mean Expected Number 0.009 +strand -28 : -22 ACACGCG AC RSP00524 Mean Expected Number 0.010 +strand -175 : -169 ACACGTG AC RSP00966 Mean Expected Number 0.003 -strand -31 : -40 GtCACGTGAT Totally 5 motifs of 5 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 351. Group RE: ERE /Group TF: TDBA12 /AC: RSP00366//OS: Nicotiana tabacum /GENE: CHN50/RE: ERE /TF: TDBA12 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G19140 |PROD: the same as GENE |10469675..10472152 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +166 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.25 C - 0.19 1 aaagcacata tataggccca tttgaaggcc caaaatggca agtaaacgaa 51 catattacgt ggaagacgtg gcaagtgtac tgctgagtca gcaatctctc 101 tccatcacat tcacATTGAt caaccctgtc cgaaaaaatt attttattat 151 tattttttgt tgtaattgca tttaacacac tcgcatcata gtcaaagact 201 CAACGCGGAA GGGAAAAAAA AAAAAGGCGC AATTGAAAGA AAAAAATTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.002 -strand -51 : -59 ATAATAAAA AC RSP00024 Mean Expected Number 0.010 +strand -53 : -46 TATTATTT AC RSP00459 Mean Expected Number 0.005 -strand -6 : -15 TTGACTATGA AC RSP00642 Mean Expected Number 0.005 -strand -27 : -34 TAAATGCA AC RSP00819 Mean Expected Number 0.003 -strand -129 : -138 GCCACGTCTT AC RSP00821 Mean Expected Number 0.001 -strand -129 : -138 GCCACGTCtT AC RSP00865 Mean Expected Number 0.000 -strand -98 : -106 GGAGAGAGA AC RSP01034 Mean Expected Number 0.005 +strand -135 : -129 ACGTGGC AC RSP01214 Mean Expected Number 0.005 -strand -163 : -172 CCATTTTGGG AC RSP01275 Mean Expected Number 0.003 -strand -138 : -147 TCCACGTaAT AC RSP01480 Mean Expected Number 0.010 +strand -61 : -54 TATTTTAT AC RSP01734 Mean Expected Number 0.009 -strand -138 : -144 TCCACGT Totally 12 motifs of 12 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: integral membrane family protein |LOCUS: AT4G19185 |PROD: the same as GENE |complement(10489096..10491668) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +169 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.34 C - 0.13 1 actttattta caaattttaa cgtatttcaa ttaaaatttg agtcaaatgg 51 tttattcaaa atacttatga aaattcaatt tttaatgcct aaattaggca 101 gcctatgagt atgagcctga tgtcctaacc agatttaata atacacgaat 151 atattttgat aaaatgatac agactcaaat aaaagtagat cgatttgaga 201 ATTAAATCTC CTAGATATTG TATATGAAAA TTTGCACAGA ACCTATAGGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01250 Mean Expected Number 0.005 +strand -131 : -122 AAAATTCAAT Totally 1 motifs of 1 different REs have been found Description of REs found 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: pectinacetylesterase, putative |LOCUS: AT4G19410 |PROD: the same as GENE |complement(10582032..10585769) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +992 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.28 C - 0.14 1 gtttcttgac gttggataac ctggcgaatc tactaacaca tgtgcacgct 51 atgccagtca caagtatctt ataaaaagaa aaaagaaaaa agaaaacttt 101 atgcaaatta aagcaaaaga gtaaataaaa aagcaaatta aaaagaagaa 151 aaagtttgat tttttatttg caacttgtgg atatgtatct atatgatgaa 201 GAAGACATCA ATGACTGGCT TCCATAAACT TTTAAAGCTC TCTCTTTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.008 -strand -37 : -44 AAAAATCA AC RSP00859 Mean Expected Number 0.001 +strand +13 : +22 GACTGGCTtC Totally 2 motifs of 2 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G19540 |PROD: the same as GENE |10657393..10659243 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.22 T - 0.31 C - 0.22 1 tacaacacga tttagatttg cgaggacgta cgtaccttac tttaatcact 51 gcattgaacg agaccaatcg caaatgctgg ggctgggagg gtaatgatga 101 cgttgacagt tttgcccatg tctATTGCtg taatttacga gaaaacccaa 151 cctttgtttt ttcaccgata tagagatgat ctaagccgtc gtctttcgcc 201 GTCGAGCCTG ACAATTGAGT GATCTGATCC TCCTTCTTCG TCTTGTTAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.007 +strand -57 : -48 AACCcAACCT AC RSP01275 Mean Expected Number 0.004 -strand -95 : -104 TCaACGTCAT AC RSP01345 Mean Expected Number 0.000 +strand -58 : -48 AAACCCAACCT AC RSP01347 Mean Expected Number 0.000 +strand -58 : -48 AAACCCAACCT Totally 4 motifs of 4 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1228. Group RE: IMH2 /AC: RSP01345//OS: Cucumis sativus /GENE: ms/RE: IMH2 /TF: unknown 1230. Group RE: IMH2 /AC: RSP01347//OS: Cucumis sativus /GENE: ICL/RE: IMH2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATPP2-A1 |LOCUS: AT4G19840 |PROD: lectin-related |10774286..10775911 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.29 C - 0.13 1 agtggaaaca agaataagct acatattgta ttcccttatc aaactttagt 51 tttgtgaata aagtgttacg aaagtgtaat aagatagatg aaaaaaacaa 101 aagaggaaaa agtaggagat aaaacatgat agaataaatt cttgatcaaa 151 cccctttacc tagggctata tatgtacaca tttaatagct tttctctgtc 201 AAGTTGAATG TACTGATCAA GATAACAAAT TTATCAAAAA TAAATACATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.004 -strand -55 : -62 ATCAAGAA Totally 1 motifs of 1 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G19985 |PROD: the same as GENE |complement(10830318..10832104) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +383 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.18 T - 0.40 C - 0.21 1 gtcgtactcg cttttttata ctcgcggtta tgttggtttc ttcttctctc 51 ctcttcctcc ggttatcgtt gcttaaacct gtttttattt tcgataaccg 101 gatccatttc gtcgataacc ggataatttt tcttgcacga gaaaaaatct 151 tgagccacac atttttttgg tgttcttctt cttcacctct gctgatggaa 201 AAATCGTGAG TTTAGAAGCA AAAATGGTTG ATTTTCTTCG AGAAATTTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00018 Mean Expected Number 0.009 -strand +25 : +19 ATTTTTG AC RSP00629 Mean Expected Number 0.004 +strand -58 : -51 AAAAATCT AC RSP01115 Mean Expected Number 0.009 +strand +19 : +25 CAAAAAT Totally 3 motifs of 3 different REs have been found Description of REs found 17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT4G20030 |PROD: the same as GENE |10846352..10847741 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.16 T - 0.43 C - 0.19 1 gaaattaggg tttttgtgtg ggttttacaa tatctaaata aatagtaaat 51 tactttttaa gtccttattg tttcaaatgt ttttagtttc cgcctaaagt 101 ttcaaattta tcactgggcc aaaaaactta ggccttagct ttttactata 151 ccgctgtcgt tttataactc tctgtttgtt tcttcttctt ctccctctct 201 ATTTCCGGCG ACTGTGAATT ATGTGGTCGG CGACGTTATC TTTCCCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 +strand -196 : -188 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand -188 : -196 AAACCCTAA AC RSP00550 Mean Expected Number 0.004 +strand +15 : +25 TGaATTATGTG AC RSP00297 Mean Expected Number 0.000 -strand -81 : -196 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.005 -strand -187 : -196 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G20150 |PROD: the same as GENE |complement(10888309..10889606) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.28 C - 0.19 1 tagtttttaa ctttctgtta atgttaaaaa aaaaaaaaaa aaagtagtgc 51 ttcttttttt actgtctaaa cttactaaca ttttccaaaa caactaaaca 101 tagcagatag cgttccatat catttatgta acccaaggtc taggcccaag 151 cccaagccca tatgagggcg atacactgaa atggcaatgt atgtggggaa 201 AACATTGTGA AGCTAAGTCC GAGTAGTCAC TTAACCGGAG ATCGGAGACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.005 -strand -181 : -188 TAACAGAA AC RSP00530 Mean Expected Number 0.001 +strand -149 : -138 TCTTTTTTtACT Totally 2 motifs of 2 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GSNAP |LOCUS: AT4G20410 |PROD: gamma-soluble NSF attachment protein / gamma-SNAP |complement(11013961..11016571) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.33 C - 0.10 1 ttcatctaaa ttatgagaat tagaatctca caaagaacag aatcgtggaa 51 atggtgtaat ttgaaacata acaaaagtat ggtttggttt gtttgaataa 101 gaatgtttca aggagttaaa ataaaatatt tgattttatt atatatctgg 151 aagataaagt ccaataattt caataataaa attaactaaa aatagaagat 201 TTGCAAATTC CTTTGATCAG ATAGTGAAAA CGATTCTCTC TATATTGCCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.009 -strand +40 : +35 GAGAGA AC RSP00228 Mean Expected Number 0.005 -strand +34 : +23 ATCgTTTTCACT AC RSP00999 Mean Expected Number 0.010 -strand +27 : +17 TCACTATCTgA AC RSP01091 Mean Expected Number 0.010 -strand -62 : -72 ATAaAATCAAA AC RSP01100 Mean Expected Number 0.000 -strand -10 : -29 TTTTAGTTaATTTTATTAtT Totally 5 motifs of 5 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1018. Group RE: RE2 /AC: RSP01100//OS: Medicago truncatula /GENE: MtLec5/RE: RE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 3-hydroxyisobutyrate dehydrogenase, putative |LOCUS: AT4G20930 |PROD: the same as GENE |complement(11198417..11201084) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.29 C - 0.16 1 cacatgctga ctacgttgac tagggaagac cggaagagac aagggcatca 51 gaccaattat ttgggttcta ctgataatgt tgaaagtaaa tgtccgggtt 101 cagaataaat taatagttaa ggggtcataa ttcaaaaaac aaaaatctga 151 gtgttttgat gagattacac acttacgtct aaaactcact ctcatttgct 201 AATTGTTAAC TTGCTCTGAG TTTGAAGAAA TTCATCAATG GCGATTCGCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.006 +strand -2 : +9 CTAATTGTTaA AC RSP00459 Mean Expected Number 0.006 +strand -185 : -176 TTGACTAGGg AC RSP00949 Mean Expected Number 0.005 -strand -179 : -186 TAGTCAAC AC RSP01641 Mean Expected Number 0.009 -strand -157 : -166 cCTTGTCTCT AC RSP01724 Mean Expected Number 0.000 +strand -192 : -181 GACTACGTtGAC Totally 5 motifs of 5 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown 1532. Group TF: STF1/HY5 /AC: RSP01724//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: EMB1417 |LOCUS: AT4G21190 |PROD: pentatricopeptide (PPR) repeat-containing protein |complement(11291508..11294019) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +246 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.25 T - 0.26 C - 0.16 1 agctgagaga gagagaattc gtttccagct cagagaatcg atggcgaaga 51 ggaaagagat gaagaataca gacgacgggt caaaattttc aggttaatgg 101 gcctatttaa ctttactagt taatgggcct atttaacttt actagttaat 151 gggccttatc cgttacttcc ataaacgcat ttcgtatgtt ttggatgaga 201 ATCAGACATC AGAGGGAACT TGGAGGACAC AGAGAAGCGC AAATTATCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00379 Mean Expected Number 0.001 -strand -39 : -48 CGGATAaGGC AC RSP00864 Mean Expected Number 0.004 +strand -195 : -187 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand -193 : -185 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: similar to oxygen-evolving enhancer protein 3 |LOCUS: AT4G21280 |PROD: the same as GENE |11334412..11335783 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.27 C - 0.19 1 taaagtattt aaacatatgg gctaactttg ggcctacaat tcggcccaaa 51 tgtttaaata atcttgccac gtggctttaa ggcggacaaa aatgacacgt 101 ggttttatat gagtggctac aaccatatcc aagttatcta aagtacagat 151 aaggcgctct gtgtcggaga atgaaaccaa ccaatcatat aagcataacc 201 AATAATCATC GGCTTCAATT TTCGTCTTGA GAAAGAAAAA CAAAATGGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.001 +strand -135 : -126 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -126 : -135 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -135 : -126 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -126 : -135 GCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -134 : -125 CCACGTGGCt AC RSP00153 Mean Expected Number 0.001 -strand -127 : -136 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -133 : -126 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -128 : -135 CACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -135 : -126 GcCACGTGGC AC RSP00204 Mean Expected Number 0.002 +strand -107 : -98 GACACGTGGt AC RSP00204 Mean Expected Number 0.001 -strand -126 : -135 GcCACGTGGC AC RSP00340 Mean Expected Number 0.004 -strand -98 : -107 aCCACGTGTC AC RSP00682 Mean Expected Number 0.002 +strand -135 : -126 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -126 : -135 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -134 : -127 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -127 : -134 CCACGTGG AC RSP00860 Mean Expected Number 0.006 +strand +30 : +38 AGAAAGAAA AC RSP01034 Mean Expected Number 0.005 +strand -132 : -126 ACGTGGC AC RSP01034 Mean Expected Number 0.005 -strand -129 : -135 ACGTGGC AC RSP01139 Mean Expected Number 0.001 +strand -104 : -96 ACGTGGTTT AC RSP01255 Mean Expected Number 0.002 +strand -106 : -99 ACACGTGG AC RSP01450 Mean Expected Number 0.000 +strand -107 : -95 GACACGTGGTTTt AC RSP01726 Mean Expected Number 0.000 +strand -136 : -125 TGCCACGTGGcT Totally 23 motifs of 14 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1322. Group TF: OsIRO2 /AC: RSP01450//OS: Oryza sativa /GENE: OsFDH/RE: OsFDH-OsIRO2-BS /TF: OsIRO2 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxidoreductase |LOCUS: AT4G21580 |PROD: the same as GENE |11475731..11477780 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.27 C - 0.18 1 ttagacacac aatttatatg attagagtcg aatgcataaa atctcaaacg 51 cgaaaaataa gcggttaaac ttttaaacac aaaataatat aaaaattgag 101 cggttaaatc CCAATtgcgg cggttgaata gtaccgatca aaccaaagat 151 tttggaattt gacggaacaa ataaaccgtg gagcattggt caataacaac 201 ACTCTTTACT CTTTCTTCCG TTTGCTCGAA CCATCTAGTC TAAGAGAAAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycine-rich protein |LOCUS: AT4G21620 |PROD: the same as GENE |11491495..11492179 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.33 C - 0.21 1 ctcaactagt tacgcaagta atagagacta tagagaaaga cacaagagtc 51 ttctttgcaa agtagagtag tagtacgggc attaaagtga ttgtattaca 101 cactaaagtc cacgaatcat tgtcttaact gtattttcat accttCCAAT 151 ttaatgctct tctctatctt tatatatcat ccagcttttt atttaatctc 201 CTCAACCAAA CCCACTAAAT ATCTACATTA CCAAAAATGT TCACAAAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.009 +strand -145 : -139 TGCAAAG AC RSP01167 Mean Expected Number 0.008 +strand +16 : +24 TAAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G21830 |PROD: the same as GENE |complement(11584371..11585431) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.41 C - 0.22 1 ctacatgctg acatgcacaa cctcgatttt aatatctccc tctctctctc 51 tccttgctgc atgttaatta ttttagatct agatctattg cgtaaatgag 101 ctgttaccta aattatttgt attATTGTta tttgtttagt atagtttctt 151 tggaagattc tcatcagttc tttaagaaat actcttctct aagcctattt 201 ATACCCCGAC CCATTTTCAC TTTGAATCAC CATTAAACCA GGTCTTTAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.008 +strand -189 : -183 CATGCAC AC RSP00864 Mean Expected Number 0.006 -strand -150 : -158 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -152 : -160 AGAGAGAGA AC RSP00865 Mean Expected Number 0.003 -strand -148 : -156 GGAGAGAGA AC RSP01031 Mean Expected Number 0.007 -strand -40 : -47 AGAATCTT AC RSP01735 Mean Expected Number 0.002 +strand -46 : -38 AGATTCTCA Totally 6 motifs of 5 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G21850 |PROD: the same as GENE |complement(11591128..11592250) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.41 C - 0.17 1 ttgtcacctt tctataatat acatgcgtca attagatcta gatctacgtg 51 tgagttgtaa ttgtaaccat atacaatcat ttttttatta ttatggtttc 101 ttaggtgtta ggaagattca tATTGTcaca tttcagacga aatagaataa 151 aatatgattg tctatgcgta tttaaacccc cctttgtagt tcttctactc 201 ACTCACAAAA TTAATTCTTC TTCTCTTTTC TTTTCTTAAA AGAGCTCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.006 -strand -149 : -158 cACACGTAGA AC RSP00357 Mean Expected Number 0.001 -strand -144 : -151 CAACTCAC AC RSP01091 Mean Expected Number 0.006 +strand -59 : -49 ATAGAATaAAA AC RSP01210 Mean Expected Number 0.009 -strand +44 : +35 CTCTTTTAAG AC RSP01260 Mean Expected Number 0.002 +strand -157 : -150 CTACGTGT Totally 5 motifs of 5 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G21860 |PROD: the same as GENE |complement(11600085..11601572) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.25 T - 0.19 C - 0.16 1 catggcctca ttaaaccacc cttagggttt gaaccaggta cacgaatgat 51 tccgacaagg atggcatagc taaacttgaa cagagaataa tgcaatttcg 101 agtgtatgta tATTGGgcta aagggcccaa acgtaaggcc caaattagaa 151 gagtgttcca gagaaaagga aaaatctgag aaaagattga gagagagtca 201 GAAAAAGCTG TTGTCAAGAG AAGAAGGAAG AGAGGAGATA AAAAGCCAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.000 +strand -179 : -171 TTAGGGTTT AC RSP00369 Mean Expected Number 0.000 -strand -171 : -179 AAACCCTAA AC RSP01006 Mean Expected Number 0.004 +strand -186 : -180 ACCACCC AC RSP01303 Mean Expected Number 0.002 -strand -170 : -179 cAAACCCTAA AC RSP01602 Mean Expected Number 0.009 -strand -9 : -16 TCTCAATC Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: MATE efflux family protein |LOCUS: AT4G21910 |PROD: the same as GENE |complement(11625374..11631090) |SUPPORT | 8 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.31 C - 0.25 1 acccgcagtt tcgtgtggcc ctcttcagtc ttcactcatc agaccgaaag 51 aaggaaaaaa aaagagagtt aaaaagcata aaacccattt tccaataaga 101 gttttctttt tctcttcttc ttacgtgtac gatcCCAATc taacaacaca 151 aaaagggttc agttttctta tctccatttt gatcatgtca aaaaccccac 201 ATGTCCACCC ATAATTCCTC CTCAGTCTTT TTATAAACAA ACCATTTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -143 : -134 AAAAAAGAGA AC RSP00596 Mean Expected Number 0.010 -strand -182 : -187 GCCACA AC RSP00750 Mean Expected Number 0.005 -strand -103 : -114 TTATTGgAAAAT AC RSP01013 Mean Expected Number 0.009 -strand -21 : -30 aAAATGGAGA AC RSP01261 Mean Expected Number 0.003 +strand -80 : -73 TTACGTGT Totally 5 motifs of 5 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G22000 |PROD: the same as GENE |complement(11659650..11660916) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +702 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.14 T - 0.33 C - 0.10 1 aaatcaaaat taagcaaaaa aaattttgaa gatggaattg tataaattaa 51 atataaatac tacactagtt tagaattgta tagtgagaat gtgagagtaa 101 cctgtactat ttatactttt tttgtcttct gaattttatt tggaaatata 151 catgattttt aaaatattta tactaagtaa ttacaaataa tttgggtgag 201 AAAACAAAAA AGAAATAGGA AAAGGGTTTA CTAACGCCAA AAAACCCAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -80 : -91 AAAAAGTAtAAA AC RSP00144 Mean Expected Number 0.010 -strand -3 : -8 CACCCA AC RSP00933 Mean Expected Number 0.007 +strand -91 : -79 TTTATAcTTTTTT Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ISU1 |LOCUS: AT4G22220 |PROD: iron-sulfur cluster assembly complex protein |complement(11759173..11760943) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.22 C - 0.24 1 atctaaagtt taggttagcg tctcaagtta gctaatacta aaagaaaaaa 51 tcaaaggaaa aaaagaaaag aaaaaagaaa tagcaaatat ctcagaacca 101 tctaaaccgt ccacgtgtcc cctcgcttat ctctctgtct gaaaccaaac 151 cgacttcttc tcacaaccct taaaggaaaa gtccgatctc atttctcatt 201 ACCAAAATCA GCGGAGCAAA AGTTACTTCC GAAACCCTAA AAAAAACACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.008 +strand -76 : -70 GCTTATC AC RSP00057 Mean Expected Number 0.004 +strand -91 : -82 TCCACGTgTC AC RSP00068 Mean Expected Number 0.002 -strand -82 : -91 GACACGTgGA AC RSP00153 Mean Expected Number 0.002 +strand -90 : -81 CCACGTGtCC AC RSP00188 Mean Expected Number 0.002 +strand -91 : -82 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -82 : -91 GACACGTGGa AC RSP00230 Mean Expected Number 0.001 -strand -185 : -194 AACCTAAaCT AC RSP00279 Mean Expected Number 0.008 -strand +40 : +32 TTAGGGTTT AC RSP00340 Mean Expected Number 0.002 +strand -91 : -82 TCCACGTGTC AC RSP00369 Mean Expected Number 0.008 +strand +32 : +40 AAACCCTAA AC RSP00440 Mean Expected Number 0.001 -strand -17 : -25 GGACTTTTC AC RSP00524 Mean Expected Number 0.005 -strand -83 : -89 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -82 : -91 GaCACGTGGA AC RSP01035 Mean Expected Number 0.005 +strand -88 : -82 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -83 : -90 ACACGTGG AC RSP01274 Mean Expected Number 0.003 +strand -91 : -82 TCCACGTgTC AC RSP01734 Mean Expected Number 0.008 +strand -91 : -85 TCCACGT Totally 17 motifs of 17 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G22340 |PROD: the same as GENE |complement(11799971..11803457) |SUPPORT | 12 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +824 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.37 C - 0.14 1 taaccaattc tggaagatta tgagcattga acataacaag gtaacaattt 51 gcaactttgt agaaaagagt tcataatatt ctcgaatttt taattgtcat 101 ttcaagttaa tatagaggag gacctttacc tttaattaaa atattatatc 151 cctttattaa ttgtggcttc tagaatcaaa agttaaaaga ttcgagaaat 201 AAGGAGAATC ATTTTCGTCT TCTACTTAGT TTTCTTCAAC TCGATTTCTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: adenine phosphoribosyltransferase, putative |LOCUS: AT4G22570 |PROD: the same as GENE |complement(11882161..11885414) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.43 C - 0.12 1 ctttttggat tttggaagat tttgttggac gacatattta tagaagttta 51 tttattattt attactaatt atcttattga actttacagt tgtacagaga 101 gatttttaac acattttaaa gcacactaca ttttaaagaa cagagaatct 151 aaccaatttt tttcttttct tttaaagata taaatagtgg taagagtagt 201 ATGACTGCTT CACTTTCTCT TTCTCTTTTG TTCAAGTAGT TTGGGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.004 -strand -46 : -52 TGGTTAG AC RSP00495 Mean Expected Number 0.007 -strand -113 : -120 TGTAAAGT AC RSP00861 Mean Expected Number 0.002 -strand +24 : +16 AGAAAGAGA AC RSP01092 Mean Expected Number 0.008 +strand -59 : -49 AgAGAATCTAA AC RSP01463 Mean Expected Number 0.006 -strand -16 : -28 ATTTATATcTTTA Totally 5 motifs of 5 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G22610 |PROD: the same as GENE |complement(11902116..11902653) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.35 C - 0.17 1 gagcaattta agtagtccga aatttcatgg tgacttttca cattgttttg 51 agaagatata acgcgtgctc gctacatgta ggaccaaaac ttactttagt 101 ttattaacta tatgtataat tATTGTagtg gacttttaat tagacgttag 151 ataattgtta atcatattct ataatctata gtaagcaact aaactttcta 201 AAAGACTATA AATCCAAGCC CTCACCTCCA AAACTAATTA CTCAACATTT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: tetratricopeptide repeat (TPR)-containing protein |LOCUS: AT4G22670 |PROD: the same as GENE |11918091..11920921 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.29 C - 0.22 1 aactttattg ggccttatta acgggcttat agtggcccac ggaaaaactc 51 gccaacaaaa taagccggtt tgtaaactaa ttttattcca atttcaacat 101 tttggttttt gtTCAATtcg attttccgca aataaaaaag cacgaagccg 151 gtccaaaacc ggcgatgctt atccgtttag aaatgagaag gtactagaac 201 AAAAGCCTTA TTCACTTCCT TTTGTTCCCC AAATTCTCGA AATCGAAACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01475 Mean Expected Number 0.001 -strand -96 : -104 CCAAAATGT Totally 1 motifs of 1 different REs have been found Description of REs found 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: DNA-binding family protein |LOCUS: AT4G22770 |PROD: the same as GENE |complement(11963639..11965695) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +245 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.08 T - 0.35 C - 0.16 1 tttctttttc gtattaattt attcaatatt aaatttaaac ggacagacaa 51 ggaaaaagtt aggaaggaaa tgaactaaaa gcctgaaata aatattaaaa 101 taatatatag aaaacgcttt attttccaaa tttcaaaatc aaaaatattc 151 attgccgtca aaaaaatatt tattttctta tttcatctaa aactacacag 201 CATAAATAAA TCTAATTTTC CTCACTTTCC TCTCAAACAT TTCCTAATTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.004 +strand -62 : -51 TCAAAAATATtC Totally 1 motifs of 1 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT4G23470 |PROD: the same as GENE |12249059..12251406 |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +240 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.28 C - 0.24 1 atctctccct tcttcgtagt cgaaaaatat ttagaatcat gaccgctcat 51 tttctccctt cttcaacctc cacacttctt ctcctccgag acgatcagtg 101 acaagagaca caaagacacg aaATTGCaaa aagtaatagg tcggggttaa 151 aataaaacta attacagttt aaccctagta ttattgatat ttgacgaaat 201 TGCCTCGTGA CTTCGTCTAG TCAACGCCAG TTGCCATCCA GGGGAGGGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00949 Mean Expected Number 0.005 +strand +18 : +25 TAGTCAAC AC RSP01641 Mean Expected Number 0.005 -strand -95 : -104 TCTTGTCaCT Totally 2 motifs of 2 different REs have been found Description of REs found 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G23493 |PROD: the same as GENE |complement(12256192..12257049) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +346 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.29 C - 0.19 1 aaaaaaaatc ttcggtacgt tttcattcaa atgtatttgt caaagacgca 51 aaccagctaa atcaatggac tatatctctg gacctgaatg aaattatata 101 ttaaatatgc ggcaaatatg aaataatgaa aaagtacgag gctattttat 151 aaaattattt aattaaacca agagtcccgg accttctcaa accttcctct 201 GCCTTTGAAA TTATCCAAAC TAAAAACAAA TCTGCGATCA GTCTTCACTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.001 +strand -68 : -59 AGTACGaGGC AC RSP00166 Mean Expected Number 0.001 -strand -85 : -92 TTTGCCGC AC RSP01213 Mean Expected Number 0.000 -strand -133 : -144 CCATTGATTTAG AC RSP01218 Mean Expected Number 0.000 -strand -133 : -144 CCATTGATTTAG AC RSP01600 Mean Expected Number 0.009 -strand +10 : +3 TTTCAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 1121. Group TF: LFY /AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/RE: CL3 /TF: LFY 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G23496 |PROD: the same as GENE |complement(12257689..12258421) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.35 C - 0.22 1 aagcttatca aaatcataag ttcgaacatt tgaatatata tttatgagat 51 tgtatatata tcactcttac aagttacaat ctctactacc atctctattt 101 agacattaga gtaaatgtac ttacgagatt atacctctta cactacgtct 151 acaatcgcta ccgccacctc tatttaagct tctctgtctt acaatatctt 201 GCTTAGTACT CAGCATTGTC TGATTAAGCT GTCGTACAAA ACAAGTCAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00132 Mean Expected Number 0.001 +strand -38 : -31 GCCACCTC Totally 1 motifs of 1 different REs have been found Description of REs found 130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: reticulon family protein (RTNLB1) |LOCUS: AT4G23630 |PROD: the same as GENE |12317834..12319947 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +246 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.31 C - 0.25 1 cctgcaatta aaaaaattag atcgtaccgc atcatgcgtc agccgcgtga 51 cacctgatca taacctagtt acttagctca gacatcgcca cgtatacgtc 101 cctcatgacg ggaaacgtta actctgacgg cgtcacatgt cgaccattcg 151 ttttgtgaaa tgtattttgt gttcccattt ggctttttgc ctttttcccc 201 AAGGTTTGGC TCTAATTAAG TAAACGAACC TGTAGCTTCG GAAGTTCGTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.003 -strand -107 : -114 TACGTGGC AC RSP00051 Mean Expected Number 0.005 +strand -114 : -105 GCCACGTAtA AC RSP00063 Mean Expected Number 0.003 +strand -159 : -150 GCCGCGTGaC AC RSP00075 Mean Expected Number 0.005 -strand -106 : -115 aTACGTGGCG AC RSP00943 Mean Expected Number 0.002 -strand -38 : -48 aCATTTCACAA AC RSP01086 Mean Expected Number 0.003 -strand -80 : -89 TTaACGTTTC AC RSP01596 Mean Expected Number 0.002 +strand -48 : -38 TTGTGAAATGt Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CDPK6 |LOCUS: AT4G23650 |PROD: calcium-dependent protein kinase, putative / CDPK |complement(12324779..12327469) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.29 C - 0.20 1 cattgaatta gccgtgtgat tgattggaga agtggaaaca actaatatgc 51 agaagatttc cacatccact aatttatctt ccaatgggac aaatactttt 101 gtttatacgc ggttcaacta cgtaCCAATa aaaacacgcc acgtggtcat 151 cgtgtctgat ctcagacatt aaaaagccat aagaatcgga gatacaatct 201 TTCTCTCTCG ATTGACTTTA TTGACTGAGA GAAAGCTTTT GACAATGGGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.004 -strand -165 : -174 TCCACtTCTC AC RSP00073 Mean Expected Number 0.002 +strand -63 : -54 GCCACGTGGt AC RSP00073 Mean Expected Number 0.002 -strand -54 : -63 aCCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -62 : -53 CCACGTGGtC AC RSP00153 Mean Expected Number 0.002 -strand -55 : -64 CCACGTGGCg AC RSP00175 Mean Expected Number 0.001 -strand -56 : -63 CACGTGGC AC RSP00682 Mean Expected Number 0.002 +strand -63 : -54 GCCACGTGGt AC RSP00718 Mean Expected Number 0.001 +strand -62 : -55 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -55 : -62 CCACGTGG AC RSP01034 Mean Expected Number 0.006 -strand -57 : -63 ACGTGGC AC RSP01058 Mean Expected Number 0.005 -strand -130 : -137 TAGTGGAT Totally 11 motifs of 8 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: major latex protein-related / MLP-related |LOCUS: AT4G23670 |PROD: the same as GENE |complement(12332570..12333814) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.28 C - 0.16 1 ttaatatgta tggggcatga atcatgaacc gtgattatct tctaaaggat 51 gctgtgccaa ctacccacgt aaataacgtg gtccaacatt aaatataaca 101 atttaATTGA aagctcttca acaaaaaagt taaaaaacaa cacacatcta 151 tcattaaata gtgtttgagt taaaaaagaa acagagaaga ttttaggtat 201 GCACTATCAA ATGATTTAAA GAAACGGTAG AAACCTTGTT TTTAACCGTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.010 -strand -22 : -33 TCTTTTTTAACT AC RSP00530 Mean Expected Number 0.010 -strand -62 : -73 TgTTTTTTAACT AC RSP00741 Mean Expected Number 0.008 +strand -77 : -66 AAAAaGTTAAAA AC RSP01000 Mean Expected Number 0.001 -strand -183 : -192 ATGCCCCAtA Totally 4 motifs of 3 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: aldose 1-epimerase family protein |LOCUS: AT4G23730 |PROD: the same as GENE |12362494..12365104 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +471 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.39 C - 0.14 1 taggtttagt agttccaaac gcaagtttta ttatgggatt atttcatggc 51 gttatagagt ttggtgactt tggtctttaa tattaaccta atgaatttca 101 gaaaatattt atctaacaac ttgatagatt acggagtgag gaattaatca 151 agtaaacaat tacatattaa aataccattt gcagtctttt attaaaacct 201 GTTGAATCTT TAGCAACTTT TCTACATATT GCCCAATTTT TCTGACTTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.010 -strand -38 : -48 gTAATTGTTTA AC RSP00332 Mean Expected Number 0.007 -strand -23 : -30 ATGGTATT Totally 2 motifs of 2 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G23885 |PROD: the same as GENE |12419404..12420477 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.29 C - 0.17 1 tgagtcaaaa acaaaaaaga aattcctagt ttgattttta tttatggttt 51 tgacttgaga gggatttttt ttgtcccaac agagaaacga acattgtgag 101 gcttttaaat gggtcatata gacttatctg ggcctaacca caaaaaatgg 151 cccacttttg gagaaacttt gaaaataaac ccgaaggttc gggaaaatac 201 AGAGAGAGAA AATTTCCAGT CGCCGTCGTC AACATTCTCC TTTTGGTACA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.005 -strand -160 : -170 ATAaAAATCAA AC RSP00295 Mean Expected Number 0.000 +strand -72 : -47 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -47 : -72 TGGGCC-- ** bp --GGCCCA AC RSP00864 Mean Expected Number 0.002 +strand +1 : +9 AGAGAGAGA AC RSP01030 Mean Expected Number 0.009 +strand -39 : -32 AGAAACTT AC RSP01600 Mean Expected Number 0.008 -strand -27 : -34 TTTCAAAG Totally 6 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein, hypothetical protein |LOCUS: AT4G23890 |PROD: the same as GENE |complement(12420424..12421474) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.33 C - 0.22 1 gcaatatgtt taattacatt accattgttt ttaatctagg cccatatctc 51 ttaagaatat tcaaacttgg tccaggttaa acttatgaca aagcccaaat 101 gttcctactc tttctcctaa atcattattc caaacaccgg ttacgcatta 151 accggttcag gtccactggt aatttggaaa tagatagaac tcatctaact 201 GAAATCATGA TATGTGGTCA TTATAACAAG CGAATCAATC ACACGCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.006 +strand -70 : -63 CAAACACC Totally 1 motifs of 1 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATCSLG2 |LOCUS: AT4G24000 |PROD: cellulose synthase family protein |12462040..12465634 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.35 C - 0.18 1 atttaccgtt ctttcttata aactagtcag gctattctgg tgttgaacta 51 cttcacttca cacgtgtctt ttggagaagt agtttcatta ataaacactt 101 atctttaatt ttggcttcaa cttttcaaag gcacataatg atcacactgt 151 actgtatcat cttatctcat aaatgagaaa ctcgaccata agaactgtct 201 ATAGTGTGTA TATTCAGAAA AGTTATCAAT AGTTCAATAC TAAGAAACCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -142 : -133 CaCACGTGTC AC RSP00524 Mean Expected Number 0.006 +strand -141 : -135 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -134 : -140 ACACGTG AC RSP01035 Mean Expected Number 0.007 +strand -139 : -133 ACGTGTC AC RSP01152 Mean Expected Number 0.001 +strand -142 : -133 CACACGTGtC AC RSP01256 Mean Expected Number 0.002 +strand -141 : -134 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -134 : -141 ACACGTGT AC RSP01469 Mean Expected Number 0.009 +strand -143 : -134 TCACAcGTGT AC RSP01600 Mean Expected Number 0.009 +strand -78 : -71 TTTCAAAG Totally 9 motifs of 7 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: Dof-type zinc finger domain-containing protein |LOCUS: AT4G24060 |PROD: the same as GENE |12503821..12505656 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.36 C - 0.20 1 ggtgtatata taaatagtta tataagccca tacatacatg cttatattat 51 atatagacgc tattcaagta tttgtttatt ttcagtacga caaagattcc 101 cactcggaat gttttaataa tcttttatca tACAATttgt tctctctctc 151 tctctctctc tctctaccat aaagcaaatg tgatcagaga caaagcatac 201 AAAGAAGTTC CTCATTCAAA AAAGATTTCT CAGCCATCAA AATTCTCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand -36 : -44 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -38 : -46 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -40 : -48 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -42 : -50 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -44 : -52 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -46 : -54 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -48 : -56 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -50 : -58 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -52 : -60 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -37 : -53 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -39 : -55 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -41 : -57 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -43 : -59 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -45 : -61 GAGAGAGAGAGAGAGAA AC RSP01597 Mean Expected Number 0.001 -strand -98 : -108 GTGGGaATCTT AC RSP01640 Mean Expected Number 0.002 -strand -6 : -15 CTtTGTCTCT Totally 16 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G24175 |PROD: the same as GENE |12546979..12548968 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.30 C - 0.12 1 ttcaaactct ttctctcgta ttagcttcac tggatgataa ataatgaaag 51 cagaaatatt cagtctttgt gtgtattgtg aaagatgagt atgtattgat 101 tggaatcaaa cTCAATgaac agagccaaaa aaaaaaagtc gtatatataa 151 agaaaaaaaa ctgactttga taaaagagaa aactttatag tttatagagt 201 GTAGATTAGA TAAAGCTCTG ACCTTGGAAC GATTTTGCCG GAGCTTGCAA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: WRKY7 |LOCUS: AT4G24240 |PROD: WRKY family transcription factor |12571776..12573735 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.31 C - 0.23 1 atttttctcg aataataata acgaatatat atataattcg agctccactt 51 gctccaaatt taaaatcatt gacgctgagg agtgtcaaaa cgcttgacaa 101 atgatcacac gtgtaagcct atgagtggtg gtcgatttga ctgatgcact 151 atcaacacat acctaaagat atagagagag aaacgcatat cgttgactct 201 CCCCCTTTTT CACTCTCTTC ATTTATTCTT CCCCTCATCA TCATCATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.008 +strand -94 : -88 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -87 : -93 ACACGTG AC RSP00727 Mean Expected Number 0.008 +strand -109 : -103 GCTTGAC AC RSP00734 Mean Expected Number 0.004 +strand -115 : -108 CAAAACGC AC RSP00864 Mean Expected Number 0.000 +strand -28 : -20 AGAGAGAGA AC RSP00915 Mean Expected Number 0.007 -strand +42 : +33 GATGATGAGG AC RSP01256 Mean Expected Number 0.003 +strand -94 : -87 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -87 : -94 ACACGTGT AC RSP01469 Mean Expected Number 0.008 +strand -96 : -87 TCACAcGTGT AC RSP01727 Mean Expected Number 0.000 +strand -96 : -85 TCACACGTGTaA AC RSP01727 Mean Expected Number 0.000 -strand -85 : -96 TtACACGTGTGA Totally 11 motifs of 8 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1535. Group TF: STF1/HY5 /AC: RSP01727//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (2) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G24330 |PROD: the same as GENE |complement(12603531..12606338) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.34 C - 0.15 1 taattttaaa gtataaattg ttcccgcgat ataccgcgga tgaaaattta 51 gttagggtat gatttttggt agaaatctta atatatccta tccaacgaga 101 aaatattata actcaacctt attcttattt tcctttaata tttttaattt 151 gtcagatgaa tttttggaac aaaaaaaaaa ggatctggtg gtggtggcca 201 AGCAAGGCTT AGGCTATAGC ACGACGACTC AACCAGCTAA TTAACAAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.006 +strand -64 : -53 AATATTTTTAaT Totally 1 motifs of 1 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CER2 |LOCUS: AT4G24510 |PROD: eceriferum protein (CER2) |12660759..12662666 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +180 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.32 C - 0.18 1 gttaccagga aactgaactt ggttttttat agattaatgt gacttgttag 51 gtaccgtaat ataatactag ttggctacga cacgtacatg tgcgtttatt 101 gcttgaagCC AATaaggaca aggtggacgt aataaagtgt gcttgttgtt 151 ggatggatct gaatatgatg actcaactgt ccaactctaa tgttgttgct 201 AAAGACCCAA ATCCCACCCA CATTTAATGT TGCCGTCACG GAAACAGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.003 +strand -122 : -113 GaCACGTACA AC RSP00068 Mean Expected Number 0.006 +strand -122 : -113 GACACGTAcA AC RSP00070 Mean Expected Number 0.003 -strand -115 : -122 TACGTGTC AC RSP00072 Mean Expected Number 0.008 -strand -114 : -120 GTACGTG AC RSP00075 Mean Expected Number 0.002 -strand -114 : -123 GTACGTGtCG AC RSP00441 Mean Expected Number 0.008 +strand -70 : -61 AAtAAAGTGT AC RSP00871 Mean Expected Number 0.004 -strand -24 : -33 GtTGAGTCAT AC RSP01035 Mean Expected Number 0.009 -strand -116 : -122 ACGTGTC Totally 8 motifs of 8 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G24760 |PROD: the same as GENE |complement(12761293..12763791) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +217 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.34 C - 0.13 1 acaatgatat tggacatgtt atgttttgca tttcaaacaa aacaaagaaa 51 gaagaaatgt cgttttttgt ttgtataaat ccaggaataa tggttttggt 101 ttttagacGC AATagagaca gtatcaccat tttcgttctg gacaaacaaa 151 taaaattaaa attttgatac attaaaatat ggttagaact tagaaaacaa 201 ATTTATTTAG GTTCATAGGC CAGTGAGTCT CTCTCTCTCT ATCTCTAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.000 -strand +40 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +38 : +30 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +36 : +28 AGAGAGAGA AC RSP00985 Mean Expected Number 0.008 +strand +5 : +14 AtTTAGGTTC Totally 4 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 26S proteasome regulatory subunit, putative (RPN7) |LOCUS: AT4G24820 |PROD: the same as GENE |complement(12789040..12792732) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.38 C - 0.12 1 tttatgattt ccattggaaa gagatataaa atataaatat ccattacttg 51 aattcaacga tcttaagttt aaattattta taacgagaat ttaaatgtaa 101 atgtttttta cttttttttc ttatggtaaa aattccaaat ttaaatgtaa 151 aaaaagataa gggtgtttaa ggtaatgcga aacttatttt ttttttacat 201 ACACAAAAAA AAAAAACCAT CGGACCTGAA ATCTTTGTAA GCTCTTCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 -strand -85 : -96 AAAAAGTAAAAA Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G25020 |PROD: the same as GENE |complement(12860644..12861985) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.17 T - 0.22 C - 0.18 1 gaagttagtg ttttttaaaa ataaaaataa aaataataat aataatagaa 51 gtgttaataa cagacaaaac aaaaaataaa aaccctggcc cataggcaaa 101 acaaaaaagg aagacacgtg ctaaatgagg gatggcccat aggcccagta 151 aactggttat atgatgaatt accacctctc aaaaccaaaa gtgtcgactg 201 TAGCGACTCT CGCCGGATAA TTTCCTAGGT AACAATCATC ACCATGAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 -strand -79 : -88 aGCACGTGTC AC RSP00125 Mean Expected Number 0.008 -strand -164 : -175 AtTATTTTTATT AC RSP00140 Mean Expected Number 0.004 -strand -163 : -175 tATTATTTTTATT AC RSP00270 Mean Expected Number 0.005 -strand -6 : -16 gACACTTTTGG AC RSP00524 Mean Expected Number 0.009 +strand -87 : -81 ACACGTG AC RSP00716 Mean Expected Number 0.009 +strand -21 : -13 CAAAACCAA AC RSP00817 Mean Expected Number 0.002 +strand -88 : -79 gACACGTGCT AC RSP01035 Mean Expected Number 0.009 -strand -82 : -88 ACGTGTC Totally 8 motifs of 8 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G25030 |PROD: the same as GENE |12864638..12866837 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +708 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.28 C - 0.18 1 aaaagtaaaa tgttgacaaa atggggttgg gaaattgaga ataaaaattc 51 aaagaaggca tgcatattgc aataataatg tgcgatttgt caaacaagtg 101 gggctgtgag agagagcgcg tggtcagcac gaagaagaag caggtacaga 151 gttttatcac cagctatcta tctttggttt gttcttaaat aataatcaaa 201 CGCCATCTCT CTCTATTCTC TATCTATCTT CTCCACGTTA CTACCACCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00474 Mean Expected Number 0.000 +strand -106 : -95 CAAGTGGgGCTG AC RSP00864 Mean Expected Number 0.000 -strand +14 : +6 AGAGAGAGA AC RSP01087 Mean Expected Number 0.004 -strand -52 : -59 CTGTACCT AC RSP01734 Mean Expected Number 0.007 +strand +32 : +38 TCCACGT Totally 4 motifs of 4 different REs have been found Description of REs found 452. Group TF: Alfin1 /AC: RSP00474//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS4 /TF: Alfin1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ACP4 |LOCUS: AT4G25050 |PROD: acyl carrier family protein / ACP family protein |12870077..12871228 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.22 C - 0.25 1 gctcaactag atgcaaaaga accaagatgg gcccgttgaa gtaacttata 51 ttttggactg ggcctgtcac ttggcaactg tgggacccac atgaacatgt 101 gccgaagata ggcctgaatc tccgagaaca aacctccgcc acaaaaacag 151 aagacttgtt gcttgcgtat cataatacga cgccgtatct ctacttgctc 201 GAACAAACCC AAAAAGATAC ATATCAAGAG ATTAAACCTT ATCCAACTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00285 Mean Expected Number 0.000 +strand -3 : +10 CTCgAACAAACCC AC RSP00303 Mean Expected Number 0.000 +strand -176 : -165 AGaTGGGCCCGT AC RSP00792 Mean Expected Number 0.002 -strand -35 : -44 gCAAGCAACA AC RSP00961 Mean Expected Number 0.007 +strand -189 : -182 TGCAAAAG AC RSP01104 Mean Expected Number 0.008 +strand -71 : -64 AAACCTCC AC RSP01114 Mean Expected Number 0.007 -strand -145 : -151 CCAAAAT Totally 6 motifs of 6 different REs have been found Description of REs found 276. Group RE: Box P /AC: RSP00285//OS: Petroselinum crispum /GENE: PAL-1/RE: Box P /TF: unknown 290. Group TF: PCF1; PCF2 /AC: RSP00303//OS: Oryza sativa /GENE: PCNA/RE: IIa /TF: PCF1; PCF2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: peptide methionine sulfoxide reductase, putative |LOCUS: AT4G25130 |PROD: the same as GENE |complement(12898603..12900074) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.28 C - 0.21 1 tgcctagctc agaatgtggc gttggcatcg aaccgaaaca taaaacgcaa 51 aacgaacctt tgggctcgtc agtatgggtt tgggccttca atagattcct 101 tctatacggc ccacatatcc actATTGGca acaaaattag aaaaatttag 151 gatttagttt taaaatttgt tccgcgacat tctagaacaa tgaagaaaat 201 GGATACAAAT AATAAATCTA TCTGCCTCTT AAAAGTTCCA AATTTCACCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01058 Mean Expected Number 0.007 -strand -77 : -84 TAGTGGAT AC RSP01202 Mean Expected Number 0.002 -strand -138 : -145 CCAAAGGT Totally 2 motifs of 2 different REs have been found Description of REs found 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G25170 |PROD: the same as GENE |12909585..12911590 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.30 C - 0.14 1 ttttatttcg tttttggaaa ctcatatgct gacgtaccaa ataaatttgg 51 gatatataat ccagtattga aacaattatt attataacaa cagtggagta 101 gtattttaat gcatttaatg gaaaaaaaga aaacagagta aacggataag 151 cgtgtcgtgg agaagaagga ccaaagcaaa gtaaagaaag tcatatattc 201 CTGAAAATCT ATAAAAGACA TTTCGCATTT ATCCACTTCC TCGATTCAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.009 +strand +30 : +36 TATCCAC AC RSP00642 Mean Expected Number 0.007 -strand -84 : -91 TAAATGCA AC RSP00953 Mean Expected Number 0.007 +strand -128 : -120 CAATTATTA Totally 3 motifs of 3 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: Clp amino terminal domain-containing protein |LOCUS: AT4G25370 |PROD: the same as GENE |12972718..12974880 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.32 C - 0.17 1 tgtgctaggc acggtgagtt aggattagaa tttgttccac tatacttgtt 51 ggttcgtttg tcctgagatt gaaatttaag atttgggagt tatgagttca 101 agtttattca tactagtcga aatttcataa attatataaa ctgggggggg 151 cgcatttgca aaatagctga gtaataatcg cctatctcac tgactcaccc 201 AAAGCCCGAC CAAAAGCTTT TGATTCCTCA AGAGTGAAAA TGGCGTCGTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00871 Mean Expected Number 0.004 -strand -2 : -11 GGTGAGTCAg AC RSP00941 Mean Expected Number 0.008 -strand -127 : -134 TTTCAATC AC RSP01594 Mean Expected Number 0.008 +strand -134 : -127 GATTGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ACYB-2 |LOCUS: AT4G25570 |PROD: cytochrome B561 family protein |complement(13053719..13055632) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.27 T - 0.20 C - 0.18 1 gacacgaagc gcggaagcgg aactagtaga tgcagctact acaatatcca 51 cgtggcgaaa cattagtcgt ttatcgagaa ctgccccacg aaattacacg 101 tctgaataga taaatcgaaa atggatcgtg aggcccacgt gtctgcgaag 151 aagggcccac agtggattat tgaaaagaag aaatggaaaa tctgaggatt 201 GATTCGTCTC AGAGGCCGAG GTTGAAGATT AATCGGACAA AGGAGATTAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.003 +strand -67 : -58 CcCACGTGTC AC RSP00073 Mean Expected Number 0.004 +strand -154 : -145 tCCACGTGGC AC RSP00073 Mean Expected Number 0.004 -strand -145 : -154 GCCACGTGGa AC RSP00093 Mean Expected Number 0.007 +strand -156 : -150 TATCCAC AC RSP00153 Mean Expected Number 0.003 +strand -153 : -144 CCACGTGGCg AC RSP00175 Mean Expected Number 0.002 +strand -152 : -145 CACGTGGC AC RSP00189 Mean Expected Number 0.002 +strand -154 : -145 TCCACGTgGC AC RSP00204 Mean Expected Number 0.002 -strand -58 : -67 GACACGTGGg AC RSP00340 Mean Expected Number 0.002 +strand -154 : -145 TCCACGTGgC AC RSP00340 Mean Expected Number 0.002 +strand -67 : -58 cCCACGTGTC AC RSP00524 Mean Expected Number 0.008 -strand -59 : -65 ACACGTG AC RSP00682 Mean Expected Number 0.002 -strand -145 : -154 GCCACGTGGA AC RSP00683 Mean Expected Number 0.002 -strand -145 : -154 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.002 +strand -153 : -146 CCACGTGG AC RSP00718 Mean Expected Number 0.002 -strand -146 : -153 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -154 : -145 TCCACGTGGC AC RSP01035 Mean Expected Number 0.008 +strand -64 : -58 ACGTGTC AC RSP01255 Mean Expected Number 0.002 -strand -59 : -66 ACACGTGG AC RSP01734 Mean Expected Number 0.006 +strand -154 : -148 TCCACGT Totally 19 motifs of 16 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: FIB2 |LOCUS: AT4G25630 |PROD: fibrillarin 2 (FIB2) |13074142..13076432 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.29 C - 0.16 1 acaattttgt tgttgctgta acacgttagt gtgtgtgatg atagaatttc 51 ataaagcttt aactacgagg ggcaaaatgt taattctaaa tagttgacag 101 cagaaaaaga tatgtataca taatataagg attaaaacgt aaataataat 151 aaataaggcg agttaaatta aaaccctgtt aaaaccctag cttgaaacac 201 ATGTATAAAA ACACTTGCGA GCGCAGCTTC ATCGCCATCG CCATTCTCTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G25660 |PROD: the same as GENE |13083416..13085194 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +270 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.29 C - 0.17 1 accaatctct tttgacaaat ttataatcca acggttcaaa ttaaaatatc 51 tcaggatgta tttaaaccaa ttgataatca tttttctggt ttaatgaaaa 101 ctaaaccggt taATTGAaag agaaagtgtc ggttgagtgt gaaaccggcg 151 tcggcaaagt gagggtataa gggtcctttc cagacaccac agcatcagtt 201 TCTTCAATCT CCCACGTCTG AGATTGAAAA GTTTGGGAGA AGATAAACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.004 +strand +9 : +15 CTCCCAC AC RSP01085 Mean Expected Number 0.000 -strand -68 : -76 ACCGACACT Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 1003. Group RE: DRE2 /Group TF: HaDREB2 /AC: RSP01085//OS: Helianthus annuus /GENE: sHSP/RE: DRE2 /TF: HaDREB2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G25680 |PROD: the same as GENE |13088249..13090170 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +185 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.26 C - 0.21 1 ccataaattc ataatctaaa cgcgtgctta agttgtaaac aaaaggaatt 51 aacaagggac acgtaaagta gcaattccgc aggaaaagcg agggtaaaat 101 tgtcatttca gtggatcccc accaccacca ccaccgccgc accagtttct 151 tcttcatctc ctacgtctga aattgagaaa tcggaagaag aaagataagt 201 CTAATCTTGT GCCTTTAGAT TTCTTTTCGG GGAGATCTAG TAGTTGTTGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.006 +strand -33 : -23 TGAAATTGaGA AC RSP00068 Mean Expected Number 0.008 +strand -143 : -134 GACACGTAaA AC RSP00070 Mean Expected Number 0.004 -strand -136 : -143 TACGTGTC AC RSP00559 Mean Expected Number 0.003 +strand -100 : -90 TGTcATTTCAG AC RSP00790 Mean Expected Number 0.001 -strand -189 : -199 aTGAATTTATG AC RSP01086 Mean Expected Number 0.010 -strand -134 : -143 TTTACGTgTC AC RSP01261 Mean Expected Number 0.006 -strand -135 : -142 TTACGTGT AC RSP01598 Mean Expected Number 0.004 +strand -100 : -93 TGTCATTT AC RSP01639 Mean Expected Number 0.008 +strand -103 : -94 AATTGTCATT Totally 9 motifs of 9 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G25720 |PROD: the same as GENE |complement(13099821..13102587) |SUPPORT | 11 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.18 1 acttagtgga tctatctatc ttgtttatca aatttaccgt aatcgacaat 51 gttcttgtac catggaagtt cctaatattc acatctggat tgagaacagt 101 agtttaataa gcttCCAATa ttgaacgatc gatttaaaaa aagttttcta 151 aaaaagaatt caatttttcc ataaaaagca aaaacacaaa tgagtcaaca 201 ACACACTTTA ACGCATTTCT CAAAATTACG TTGCCAAAGT CTGGTCAGAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.005 +strand -35 : -20 TTTCCATAAAAaGCAA AC RSP00080 Mean Expected Number 0.005 -strand -20 : -35 TTGCtTTTTATGGAAA AC RSP01058 Mean Expected Number 0.003 +strand -197 : -190 TAGTGGAT AC RSP01602 Mean Expected Number 0.003 -strand -106 : -113 TCTCAATC AC RSP01632 Mean Expected Number 0.002 +strand +6 : +16 CTTTAAcGCAT AC RSP01633 Mean Expected Number 0.001 +strand +6 : +16 CTTTAACGCAt Totally 6 motifs of 5 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxysterol-binding family protein |LOCUS: AT4G25850 |PROD: the same as GENE |13143657..13146939 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.27 C - 0.25 1 ccgactaaac taaactctta actcttaagt gaactaaacc gactaaacta 51 aagtcttgga ccattcccct aagtgcaaca caaatcggcc acgatctaag 101 cgaacgatga gatattaaat gacgaaaaga tggacctaac gaccaacgcc 151 tcctccgaat caatagttaa tgcttaccca actcttttcc ttattttacc 201 ATCTCTCTCT GTTTGCATTG TTTATATATA ATATGATCGG AGCCAAAAGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.005 -strand -72 : -81 CTTtTCGTCA AC RSP00163 Mean Expected Number 0.001 -strand +50 : +40 CCTTTTGgCTC AC RSP00864 Mean Expected Number 0.001 -strand +10 : +2 AGAGAGAGA AC RSP00892 Mean Expected Number 0.003 -strand -83 : -91 TTAATATCT Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: NFU3 |LOCUS: AT4G25910 |PROD: nitrogen fixation protein, putative |13163982..13165173 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.39 C - 0.20 1 tccaattctc gtttttgggt ctatctatat ttgggctggg ctttataaga 51 ggcgaagccc atgtcgaaca atcaattttt ttttaatttt atatttcttt 101 tgggagtctg ttctgtcgtA TTGAttaata aagtaaaaaa tcttagccac 151 aaaattaaat catctccaag acgtatcaat atcatcatca atccaccaat 201 GAAAAGTTCT CTCTTTTTTT TTCCCACTCT TACTCTGTTC TCGCTACAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -73 : -62 AtAAAGTAAAAA AC RSP00296 Mean Expected Number 0.000 +strand -164 : -140 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -140 : -164 TGGGCT-- ** bp --AGCCCA AC RSP00445 Mean Expected Number 0.005 -strand +19 : +10 AAAAAAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: KH domain-containing protein |LOCUS: AT4G26000 |PROD: the same as GENE |13197255..13199837 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.27 C - 0.21 1 aagagttgga gtattcattc tttggttaaa catagaccta atacatagct 51 catatggaca atttttcgac aaaacaaaaa tgatagcaaa tgggctaaaa 101 tggtttcata tcgaaaagcc caaaccatta agccaaaacg acgtcgtacg 151 atatgacagc ggcgattcct ataaccacca ccagaggtta aaaagtctct 201 CTCTTTAGCT ATCTTTTTTG TGTTACCGGT TCAAATGGCC GCCGTCGCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 -strand +19 : +10 AAAAAAGAtA AC RSP00857 Mean Expected Number 0.004 -strand +38 : +29 CCATtTGAAC AC RSP00864 Mean Expected Number 0.001 -strand +4 : -5 AGAGAGAGA AC RSP01221 Mean Expected Number 0.005 +strand -29 : -22 TAACCACC Totally 4 motifs of 4 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G26060 |PROD: the same as GENE |complement(13214755..13216470) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +506 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.26 C - 0.15 1 gtaaaaacat cattattgat tacataatat aaatcatgaa aaggacaaaa 51 gattagtgga agaattaaat actcgtatag ttgttaagac attaaaagta 101 tttaattaag caaaatagta ctagaaaaga gacaaacttg ctttaggcaa 151 aagaaaaaat agactttcat ttttcttgca tcttccgctc tctacgcatt 201 TATCACGCTG ACGAAGTTGA AACAAGCAGC ACAAGAAGAA GACGAAGCAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00595 Mean Expected Number 0.004 -strand -90 : -98 GCTTAATTA AC RSP01015 Mean Expected Number 0.003 -strand -28 : -37 aAAATGAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: thioredoxin family protein |LOCUS: AT4G26160 |PROD: the same as GENE |13255283..13256768 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +22 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.27 C - 0.16 1 gaacaacatg attattgtaa tataccttaa ctaccatata atttttttca 51 attctttctg gatacaattg taagaaaaca gaaaaatcgg aaaaatgaga 101 aaattcacca aaactaatgg ggttgttttg aaattagttt gatacttgag 151 gattgacaaa cgaattctac ttttccgggg aaagaattag agagcgaaac 201 AGAACAAAAC AAACAAAAAG TCATGTCTCC GACGACGACA TCGTTACGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.004 +strand -189 : -178 TTATTGTAAtAT Totally 1 motifs of 1 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G26210 |PROD: the same as GENE |13281946..13283411 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +433 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.31 C - 0.22 1 cgtgagaggt gagacctaac aattcaattc aaatttgaca ttatttgggc 51 ctccttctta agattcgcct acgtttgatc aatctaattt catattgggc 101 tattaagagt tattaaaggc tcatatgagg cctgtaatgt ttttttcgcc 151 gcattatcgg aaaaacctca agaagaagag tggtgacata acaaaacccc 201 AAAAGCTCCC AAGCCTAGAG ATTCTGTTGT TGATCCGATT CCCGCTCTCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.002 +strand -95 : -84 AGAgTTATTAAA AC RSP00881 Mean Expected Number 0.008 -strand +34 : +25 ATCAACAACa AC RSP01103 Mean Expected Number 0.005 +strand -38 : -31 AAACCTCA AC RSP01205 Mean Expected Number 0.007 +strand -148 : -139 CCTTcTTAAG Totally 4 motifs of 4 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: caffeoyl-CoA 3-O-methyltransferase, putative |LOCUS: AT4G26220 |PROD: the same as GENE |13283667..13285332 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +521 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.31 C - 0.17 1 ccagagaaga gtaagacggc attatattat aaaccgtttg gtaatatgta 51 tcattcttct tctatcacaa aaaaggaaga aaatcctata tttttgacaa 101 ttgtctgaaa atacgattag gttcagagta tttcaacgtt gtctctgtca 151 tttgtctatc gcaatttcgc ataaaagcaa gccttgtagg tgtagaagcc 201 ATCACACCAG ATTGTAGTGG ATGATCGGAA ACTAAGACTT CAGTCATCTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00868 Mean Expected Number 0.007 +strand -181 : -170 cATTATATTATA AC RSP01058 Mean Expected Number 0.005 +strand +15 : +22 TAGTGGAT AC RSP01598 Mean Expected Number 0.008 +strand -55 : -48 TGTCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G26240 |PROD: the same as GENE |complement(13286786..13288980) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.31 C - 0.20 1 ctcttgtagt tttgcgacca aaaaaagtag tgtaactaaa ttgttctagt 51 taggcccact tgcgttgaat taaatagccc atttatttca acacagcaaa 101 ccaagccgga gataagaaac cgaaTCAATc ttgctaaact atgggctggg 151 cttcttaata ggccgtagct taaaggcgtt ttggctggag acactttcgt 201 TGAAGAAACG ATGATGCTCA TTGAAGTTTT CCTAATTTCT CCATCTTCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.003 -strand -18 : -25 CAAAACGC AC RSP00988 Mean Expected Number 0.000 -strand -11 : -22 CTCCaGCCAAAA AC RSP01032 Mean Expected Number 0.007 +strand -183 : -174 CCAAAAAAAG AC RSP01209 Mean Expected Number 0.006 -strand -174 : -183 CTTTTTTTGG AC RSP01642 Mean Expected Number 0.005 -strand -5 : -14 AAgTGTCTCC Totally 5 motifs of 5 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CSN6B |LOCUS: AT4G26430 |PROD: COP9 signalosome subunit 6 / CSN subunit 6 (CSN6B) |13355000..13357610 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +237 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.04 T - 0.35 C - 0.11 1 acataataaa attttaatag taacacttac aaacatatcc aataatatta 51 aataaaatta attcattatg atctttatgt tatttctata tactcaaacc 101 aaaaaaaaag aagtaaatga ttcaaaatCC AATcataatt atttttcaaa 151 ttcattaaaa tacaagaaat ttcatattaa aaaaatagat atttctttca 201 AAGATTTATA TTCAAATTAT AAATATATAC TAAAACGCTA AAAAATTAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.006 +strand -5 : +3 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: EMB1374 |LOCUS: AT4G26500 |PROD: |complement(13382206..13383649) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.35 C - 0.19 1 aagaaccagg aagacgatgc ttcaaaacaa aacaaaaaaa atctagatat 51 ctttttcttt tccttattta tgaaaagagt cgtatacttt ctaattattc 101 ataatcaacc ccacaATTGA ttttacatct aatttttgga ttttggtaca 151 ttcccggttt aattcccggt tactacctaa ttggcggtat tggtttttga 201 CTCAGAAAAA GTGAAGAAGG AGAGCTTTCA TCATCATCTC AGTCTCTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.002 -strand -6 : -15 AACCAATaCC AC RSP00888 Mean Expected Number 0.006 +strand -164 : -156 AAAAATCTA Totally 2 motifs of 2 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G26510 |PROD: the same as GENE |13384070..13388297 |SUPPORT | 15 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +743 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.36 C - 0.20 1 ctcaaacacg tccgccatta ttatatatca aatcaatcat gtccgaatcc 51 agcttttacc aatgtaagca attaaattaa attaaataaa aacactttta 101 tcaaatttaa tcaaattaaa aaactgtccc tttcttatct gagattctat 151 tgtttctgtc tacttccaca gaaagaaact gcatctccgt ttttttttct 201 GATTTGAGGC TTTCCTTAGA TCCTTGAGAG CAAAACTGAA TCTGGGTAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.001 +strand -31 : -23 AGAAAGAAA AC RSP01093 Mean Expected Number 0.003 -strand +20 : +10 TCTAAGgAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: fructose-bisphosphate aldolase, putative |LOCUS: AT4G26530 |PROD: the same as GENE |13391351..13393126 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +222 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.36 C - 0.17 1 aatgatgaca aaatgcaaaa aaaataaaat acatttgggt tcattatcta 51 aaatatctct tgtgtttgta agttttggtt gcacactcgt gtggttgaag 101 tgtgtgtgag aggtactatA CAATacactc tgcttttgtt ttgtacctat 151 ctctttctct tctccacata tccaagactt tggggataaa gctgagatca 201 TTGGTTGCCA TTTGGTTGTG TAGAAGCAAT CACCCATTTG CTTTATCCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.005 -strand -95 : -104 CACaCACTTC AC RSP00861 Mean Expected Number 0.003 -strand -43 : -51 AGAAAGAGA AC RSP00999 Mean Expected Number 0.004 +strand -160 : -150 TCAtTATCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATCBL3 |LOCUS: AT4G26570 |PROD: calcineurin B-like protein 3 (CBL3) |complement(13408451..13411076) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +1072 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.34 C - 0.16 1 aatggacaca tgctccacta gacgacgacg tgtgaaagtg aatgtaacaa 51 ggagttttat tacaactgta tcaacatcga gtaaaaataa acaaaattat 101 ttatttttta aatttaaaaa gtataaaaac gccaacaaac aaaaataatt 151 tggtcttttt cttagcatat ttaaaatttt gcaatatatt cattctgctt 201 ATAGAAAATC GTGTCGACCT TTTTTCTCTC ACTTACCCAA TAAGAGCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00020 Mean Expected Number 0.001 +strand -125 : -114 aTCGAGTAAAAA AC RSP00110 Mean Expected Number 0.000 -strand -167 : -174 CACACGTC AC RSP00163 Mean Expected Number 0.001 +strand +18 : +28 CCTTTTtTCTC AC RSP00286 Mean Expected Number 0.001 +strand +27 : +37 TCTCACtTACC AC RSP00423 Mean Expected Number 0.009 +strand -174 : -169 GACGTG AC RSP00424 Mean Expected Number 0.009 -strand -169 : -174 CACGTC Totally 6 motifs of 6 different REs have been found Description of REs found 19. Group TF: GT-1 /AC: RSP00020//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box6 /TF: GT-1 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G26760 |PROD: the same as GENE |complement(13478598..13481757) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +451 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.33 C - 0.24 1 gaaagccttt taactattca gacatgagca tgaggagtca acgaggtctg 51 tgagatcagt ggtcaaatca gtaaataacg cgaaaagaca gggtctctca 101 cctttttgct gttgtttttt cctcattaat tATTGAgttc cgtaaaatgg 151 gtcccacttt tcccatttcc caacctccat aaccaaagtt ggagatttct 201 CTGTTTCCTA TGCTCTCTCT CTCTCTTACT CTCACAGTGA CTATTCGTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.009 +strand -140 : -134 GGTCAAA AC RSP00467 Mean Expected Number 0.004 +strand -141 : -132 TGGTCAAATC AC RSP00747 Mean Expected Number 0.001 +strand -135 : -124 aATCAGTAAATA AC RSP00864 Mean Expected Number 0.004 -strand +26 : +18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +24 : +16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +22 : +14 AGAGAGAGA Totally 6 motifs of 4 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: AR192 |LOCUS: AT4G26780 |PROD: co-chaperone grpE family protein |complement(13484845..13486777) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.29 C - 0.24 1 agcaacagta acatactgct gcttgttctg tttggtagga ctgtaccaat 51 caggcccagg agataaatgg acttcgtctg tcccaaagat atacaagtac 101 ctttggttct ttctagaggc ttctcaaatt agctttcaaa atctcccatt 151 tgctataatg acaataatac cctcacaggc tcgccgaatc aaagcgatca 201 TTTTAGCCTC AGCCCGCTCG TGCAGCGGTA AGGCTATTTA CGTAAATTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00395 Mean Expected Number 0.010 +strand +38 : +47 TTACGTAaAT AC RSP00566 Mean Expected Number 0.009 -strand -103 : -112 aCTTGTATAT AC RSP01202 Mean Expected Number 0.003 -strand -95 : -102 CCAAAGGT AC RSP01509 Mean Expected Number 0.001 +strand -156 : -148 ACCAATCAG Totally 4 motifs of 4 different REs have been found Description of REs found 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT4G26790 |PROD: the same as GENE |13487463..13489382 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +402 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.19 1 atgagagaca ctttcttgcc gttacttgtt attgtcgttg caacaaccaa 51 aactatggtt gaactaaaaa gccccaaaac gtgcgacaca gttcacccaa 101 agtgcaaata atctttacat tcaagactct agactcagta aGCAATaaaa 151 acagtaagtg atacaagaac agagagttga gttttgagcg tgaatccggt 201 AAAAAGGAAG ATGCGTTACA TATACATCTG AAGCTTGCAA TGGTACGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.004 -strand -184 : -193 AAgAAAGTGT Totally 1 motifs of 1 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SUM1 |LOCUS: AT4G26840 |PROD: ubiquitin-like protein (SMT3) |13497334..13498733 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.17 1 gcaacctaaa atatttaacc aaatgaaatt gtctagtggg ttagatgtgg 51 cccaataaaa atataagccc attataacga aacgacagat ttgaacataa 101 ctagcagccg ttggattaaa agagaaccta gagagaatat gaaccgttgg 151 atagatgccc tacgatttat gatagagagg aatccgatgc gtccaagtac 201 AAAAGCCACG GCCAATTAGA GAGATTTTCA GAGTCAGTCT TTTTATATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.004 -strand -136 : -147 tATATTTTTATT AC RSP00863 Mean Expected Number 0.003 +strand -27 : -19 AGAGAGGAA AC RSP00985 Mean Expected Number 0.010 -strand -99 : -108 AGTTAtGTTC AC RSP01465 Mean Expected Number 0.000 -strand -145 : -155 ATTGGGCCACA AC RSP01497 Mean Expected Number 0.002 +strand -94 : -85 GCCGTtGGAT Totally 5 motifs of 5 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: alanine racemase family protein |LOCUS: AT4G26860 |PROD: the same as GENE |complement(13503092..13504756) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.29 C - 0.17 1 tataaaaaca caattttgat attgtttatg caataaagat tccaataatc 51 tcgtgaattg atgactatat acatcaaccc ttacatgtgt ctctgccttg 101 gaaattttga ttaaaagtga agagataaat aatcgcaatt agtATTGAac 151 gtgtggaccg tgaattatcc aattaaaggc cataaactaa tttacgtgac 201 AAAAACATTA CTCCCGAAGA AGCCCAAATT GACGACAGGC GTTAGTGGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 -strand -40 : -47 ACGGTCCA AC RSP00114 Mean Expected Number 0.006 -strand +39 : +30 CcTGTCGTCA AC RSP01094 Mean Expected Number 0.002 -strand -26 : -37 TAATTGGATAAt AC RSP01469 Mean Expected Number 0.007 +strand -120 : -111 TtACATGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 2-oxoacid dehydrogenase family protein |LOCUS: AT4G26910 |PROD: the same as GENE |complement(13519817..13523220) |SUPPORT | 14 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +325 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.32 C - 0.21 1 aaccggaacc acaatatgga attgaaaagc aattcaactc aaattccaga 51 tctttttctt ttgtcaaaat tgtacaactt tctgtttata cattgtgcca 101 aaaataaaat aaaaaacaac gaattatagt ttgacacgtg taaatcagaa 151 gacaagtctt atgaactttg ccatattccg gtgacttgct ccaaagtctc 201 ATATGCGTTT ACCGATCTTC TCGATTCTCC AATTCCAAAC CCTAACATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.004 -strand +45 : +37 TTAGGGTTT AC RSP00340 Mean Expected Number 0.001 -strand -59 : -68 TaCACGTGTC AC RSP00369 Mean Expected Number 0.004 +strand +37 : +45 AAACCCTAA AC RSP00524 Mean Expected Number 0.006 +strand -67 : -61 ACACGTG AC RSP00524 Mean Expected Number 0.006 -strand -60 : -66 ACACGTG AC RSP00859 Mean Expected Number 0.001 +strand -18 : -9 GACTtGCTCC AC RSP01035 Mean Expected Number 0.006 -strand -62 : -68 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -67 : -60 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -60 : -67 ACACGTGT AC RSP01303 Mean Expected Number 0.008 +strand +36 : +45 cAAACCCTAA Totally 10 motifs of 8 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: galactosyltransferase family protein |LOCUS: AT4G26940 |PROD: the same as GENE |complement(13529431..13532705) |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +312 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.33 C - 0.20 1 ttagttggtc aaaatttatg cgtagagtgg tcctgtcggt agcttcaatt 51 ttaattagtt tctcttaatc caatctactt gatattatta ctgtaaagtg 101 aaaattaact aataaagcaa aaataataat ataattttaa ttagcccaac 151 actaaaatcg caactaaata agattcgatt catcttcttc cagcttcgaa 201 TTCCACGCAC CAAAGGCAAA GACACAAAGC CACGGCTTTT CTCTCTTGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00495 Mean Expected Number 0.006 +strand -109 : -102 TGTAAAGT AC RSP00593 Mean Expected Number 0.003 -strand -25 : -33 GAATCTTAT AC RSP00869 Mean Expected Number 0.001 +strand -109 : -101 TGTAAAGTG AC RSP00889 Mean Expected Number 0.006 +strand +3 : +9 CCACGCA AC RSP01601 Mean Expected Number 0.007 -strand -98 : -105 TTTCACTT AC RSP01687 Mean Expected Number 0.006 +strand +33 : +39 CGGCTTT Totally 6 motifs of 6 different REs have been found Description of REs found 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: TSB2 |LOCUS: AT4G27070 |PROD: tryptophan synthase, beta subunit 2 (TSB2) |13586500..13588825 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.33 C - 0.24 1 taaaattagg catgtgataa acactccaac ccccaaaatg tacaccgccc 51 tattctcacc aacctcttct gactcttctc tcattttctg ttgttcacaa 101 ataagttaac gtggtaccga actaccgatt tcctccacta ttttATTGAa 151 tttctggtca aaaaacttaa gtgttacata acgaatctat aaaaagaacc 201 CTCACTTTCA AGGTTTTTGT CAGCAAAACA TTTGTCTTCG TGTTTGAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.005 +strand -147 : -137 TCTCACCaACC AC RSP00383 Mean Expected Number 0.009 +strand -45 : -39 GGTCAAA AC RSP00950 Mean Expected Number 0.004 +strand -146 : -136 CTCACCAACCt AC RSP01044 Mean Expected Number 0.001 +strand -147 : -136 TCTCACCAACCt AC RSP01083 Mean Expected Number 0.001 +strand -147 : -136 TCTCACCAACCt AC RSP01475 Mean Expected Number 0.002 +strand -168 : -160 CCAAAATGT AC RSP01678 Mean Expected Number 0.003 -strand -53 : -64 CAATAAAATAgT Totally 7 motifs of 7 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATPDIL5-4 |LOCUS: AT4G27080 |PROD: thioredoxin family protein |13589078..13593555 |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.24 T - 0.32 C - 0.14 1 caactctgat cgaatgattt ataaacaact ctgctcttta atggtgatca 51 ttgtaaattc aaacttgtgt attgtttgta ctaatttgtt ctgatagaaa 101 ctattttggg ttaaatggga aacgggtcaa agcatagggg gctagtgttg 151 taatttagta gattggggag gagtttcaaa tctgaacgct gaagataaat 201 CACAAGGGAG GTGCTTCGTC CTCGAAGCTT TTAGAACTTA GCCAAGCAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01692 Mean Expected Number 0.005 -strand -187 : -194 TTCGATCA AC RSP01776 Mean Expected Number 0.008 -strand -156 : -166 ACcATTAAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: eukaryotic translation initiation factor SUI1 |LOCUS: AT4G27130 |PROD: the same as GENE |complement(13604601..13606454) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +923 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.26 C - 0.20 1 atcaaatttt gtttttaccg aaaacgaatc ttggtttaat ttggtaccaa 51 atatatatca ctctaaaccg aaccaaaatc caccgcatcg taaccaaaac 101 aaagctctgt ttcgttcaaA TTGAtaaaat aaaataaaat accaaaccgc 151 aaaattgaaa ttccaaaatc tccaaataac cggaatgcct agctctctct 201 ATCCATGGAA AAAATAAAAT AAATATCTAA AGAAAAGCTG CTAAAGAGAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.007 +strand -121 : -112 CCACCgCATC AC RSP01167 Mean Expected Number 0.008 +strand +20 : +28 TAAATATCT Totally 2 motifs of 2 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: histone H2A, putative |LOCUS: AT4G27230 |PROD: the same as GENE |complement(13637345..13638425) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.30 C - 0.21 1 tagcccatat aacaatccat tgaaatcatc ggagaaccaa aaaaaggaca 51 aagcaggtgg gcgcacgaat ctcaaatcac gtcccttaaa cttgtaacaa 101 tctgacggtg tagattatcg atccatgcag tgtcatatcA TTGGtcagaa 151 atattttcta tctcgccact atattaatca tcatggcggg tttcgctgat 201 ACTCATTATT GTTATTTTTG ACAGAGAGAA ATTTCTCAGT TACGCTTCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.002 +strand -88 : -78 GATtATCGATC AC RSP00628 Mean Expected Number 0.010 +strand -105 : -98 AACAATCT AC RSP01032 Mean Expected Number 0.009 +strand -164 : -155 CCAAAAAAAG AC RSP01033 Mean Expected Number 0.006 -strand -154 : -163 CCTTTTTTTG AC RSP01209 Mean Expected Number 0.008 -strand -155 : -164 CTTTTTTTGG Totally 5 motifs of 5 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: calcium-binding EF hand family protein |LOCUS: AT4G27280 |PROD: the same as GENE |complement(13663582..13664246) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.28 C - 0.30 1 ccctttacga agtgacgata ttacccctaa aagcgacctt cctcgaagaa 51 accacatacc aacaatctga gagattaatc gcaatttccc agacacggga 101 ccttccctca ttaatcttag ctggcttcca tggatgttcc ttctcagaaa 151 tcccaatttc tcttccttta tattctcatt cactcctcat tctcctcctc 201 AAATCAATAA CAACGATAAA AAAACAAACC TTCCTTAACC AGAACCAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.008 +strand -132 : -127 GAGAGA AC RSP00172 Mean Expected Number 0.007 -strand -187 : -192 CACTTC AC RSP00234 Mean Expected Number 0.004 -strand -167 : -176 GCTTTTAGGG AC RSP00416 Mean Expected Number 0.002 -strand -65 : -71 CATCCAT Totally 4 motifs of 4 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 166. Group RE: CACTTC motif /AC: RSP00172//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACTTC motif /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: plastocyanin-like domain-containing protein |LOCUS: AT4G27520 |PROD: the same as GENE |complement(13750446..13751911) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.30 C - 0.22 1 ctgttctcta atgcgttttt cccggggata aattcatata acttcaaatc 51 ccaaaaagaa ttaaattaaa cacgtcggca gatacgaaga agcaatatct 101 tcttttaatg tgaggaaaac gagtagatac agagatTCAA Tttcgaacac 151 gtattaccca taaaaacgac ctctctctat cattaagaca aaaaagcttc 201 ACACTTTCCT TAGCCCATTA TAAACGCTTC ATTTCTATAT AAACATCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.006 -strand +38 : +28 ATAGAAATgAA AC RSP00359 Mean Expected Number 0.006 -strand -122 : -127 GCCGAC AC RSP01288 Mean Expected Number 0.006 -strand -47 : -54 ATACGTGT AC RSP01702 Mean Expected Number 0.009 +strand -55 : -46 AACACGTATT AC RSP01703 Mean Expected Number 0.000 -strand -123 : -132 CCGACGTGTT Totally 5 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: prenylated rab acceptor (PRA1) protein-related |LOCUS: AT4G27540 |PROD: the same as GENE |complement(13753219..13754751) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.35 C - 0.11 1 actagctatc ttaattcata gaatgatttt tttaataatt aatatgatat 51 ttagtttcgt gcatgcatgt ttcatctaat ataaaaggta tttagtaagC 101 CAATtgatta acaagaacca ttaaactaca ttataggagt taaattaaca 151 aaagataata taagagccct atattagcaa ttatgaagat attttggatc 201 ACGAGTTGCA ATTTCTTGTA AATTGATTTT GGGAAGACCG AGGAGACGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.005 -strand -136 : -142 CATGCAC AC RSP00108 Mean Expected Number 0.001 +strand -139 : -132 CATGCATG AC RSP00108 Mean Expected Number 0.001 -strand -132 : -139 CATGCATG AC RSP00350 Mean Expected Number 0.000 +strand -143 : -133 CGTgCATGCAT AC RSP00934 Mean Expected Number 0.004 +strand -154 : -145 ATATTTAGTT AC RSP01074 Mean Expected Number 0.000 +strand -140 : -131 GCATGCATGT AC RSP01074 Mean Expected Number 0.000 -strand -131 : -140 ACATGCATGC AC RSP01470 Mean Expected Number 0.006 +strand -140 : -131 gCATGCATGT Totally 8 motifs of 6 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown 992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycosyltransferase family protein |LOCUS: AT4G27560 |PROD: the same as GENE |complement(13759850..13761565) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.25 C - 0.19 1 caagaacgta aaagcaatga aaaaaaagaa gtaatcaagt agtaaaatga 51 ccttaatctt aatggtcctc caagttacac atgcacttac caaagtactt 101 aaacaaatag taaataactt ttgagacagc accgacgaag tgacATTGGc 151 cgactaatat actcacgtgt tagatatttt cataccaacc gcggcatcat 201 ATAGATTTTA GACCTTTTAG TCTCCAAAGC ATAATAGAGA TACAAAGAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.005 -strand -31 : -37 ACACGTG AC RSP00854 Mean Expected Number 0.000 +strand -11 : -3 CGCGGCATC AC RSP00978 Mean Expected Number 0.001 +strand -39 : -30 cTCACGTGTT AC RSP01511 Mean Expected Number 0.001 +strand -10 : -3 GCGGCATC Totally 4 motifs of 4 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 791. Group RE: OCT /AC: RSP00854//OS: Zea mays /GENE: H4C7/RE: OCT /TF: unknown 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1365. Group RE: OLS /AC: RSP01511//OS: Triticum aestivum /GENE: H1 (TH315)/RE: OLS /TF: unknown ||Identical REs AC: RSP01512 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G27580 |PROD: the same as GENE |complement(13765667..13766603) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +291 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.29 C - 0.20 1 acatggtcct tgtgttctta ttcaccttta ttcccattgc attgcttatt 51 acctgtaccc gttattattc ggttcggttg cagagtattg caatctaacc 101 aggaggagct tgtgaatcca tgagatgtca gaatttgcca gcagaaaaga 151 agccattgcc ccctaaacag gatatagaag aatggtggag ataaaagttg 201 TCCTCCGGAT AAATAGGTCC TCACAGAGAA TCAAAGGTGT AATGACTTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.008 +strand -87 : -79 GAATCCATG AC RSP01091 Mean Expected Number 0.004 +strand +25 : +35 AgAGAATCAAA Totally 2 motifs of 2 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: band 7 family protein |LOCUS: AT4G27585 |PROD: the same as GENE |complement(13766769..13769967) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.27 C - 0.20 1 attttcttgc aatttctcga ttcacaatga attttggatt caactaaaaa 51 aaactcttta aaataacaac caaaacaatg aataataaat taataacaga 101 tggatatttc aggcgtctga atgggctaga gataagcCCA ATaataacag 151 caggtaccaa actatccact aaagcccaat aaaatatttg cctcctctcc 201 ACGCATATTG CGTGAAATCT TCGTGATCCG GCGAAGAAAC AGTACCTGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00889 Mean Expected Number 0.009 +strand -2 : +5 CCACGCA AC RSP01058 Mean Expected Number 0.008 -strand -30 : -37 TAGTGGAT AC RSP01114 Mean Expected Number 0.010 -strand -164 : -170 CCAAAAT AC RSP01678 Mean Expected Number 0.009 +strand -24 : -13 CAATAAAATATT Totally 4 motifs of 4 different REs have been found Description of REs found 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: MSP1 protein |LOCUS: AT4G27680 |PROD: the same as GENE |13821112..13823345 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.17 T - 0.29 C - 0.26 1 tagtacctac aaaatctagt ggacgccgaa cagtacttta attcggtttt 51 agaacattct gaattgaagg cctattaaag gcccttcttg acacaatcta 101 gttacacgac ttacgacggt gcagctaagg ctatttcggt aatttcagct 151 tctcctttcc tcgatctcca agtattcgag aaacccccac caaggcaaaa 201 GCTCTGTCGT CGTCCACAAG AACAACCAAA TTTGTTTCCG TCTTCTGCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00559 Mean Expected Number 0.003 +strand -63 : -53 gGTAATTTCAG AC RSP00601 Mean Expected Number 0.002 +strand -16 : -8 CCCCACCAA Totally 2 motifs of 2 different REs have been found Description of REs found 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: rhodanese-like domain-containing protein |LOCUS: AT4G27700 |PROD: the same as GENE |complement(13826380..13827829) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.18 T - 0.24 C - 0.13 1 ataaccgaaa acgtaaaaac caggttaacc aaatctaagc gatccaatca 51 aaaactcaag aatggcgcaa tgagaaaact aaagaagata agagaaatat 101 tttattttat gttttggtcg aaaagaagat aagagaagat tatgttgtgt 151 caacttttga tcgtttgaat acaaaagata gaaaatcggg aaaataaaat 201 AAGCACCACA TGTTCAGATT TTTTCCTAAC AAGAAGAAAA GAAGTCGCAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.007 -strand +23 : +16 AAAAATCT AC RSP01678 Mean Expected Number 0.003 -strand -94 : -105 aAATAAAATATT Totally 2 motifs of 2 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G27720 |PROD: the same as GENE |13831126..13833820 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.31 C - 0.18 1 atatttcttc tattatcctc tgcacttaac acacggtgga ctacgtactc 51 tcacgctgct tcagattcgt acattgcgat ttggaatgtt tattatatac 101 ccaaagagca aaactttagg tgggccttaa actaattaat ggcatttacg 151 cgtcagtgag agtggagtat ataacaatct gaagctgaag aagaagaatt 201 GAGAGATAAC AGAGAGATAG TTTCTTCTTC ATCCAAAAGA ATCCAATCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00200 Mean Expected Number 0.001 -strand -60 : -69 CATTAATTAG AC RSP00628 Mean Expected Number 0.008 +strand -28 : -21 AACAATCT Totally 2 motifs of 2 different REs have been found Description of REs found 193. Group TF: GmHdl56; GmHdl57 /AC: RSP00200//OS: Glycine max /GENE: vspB/RE: PRD motif 1 /TF: GmHdl56; GmHdl57 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: mitochondrial substrate carrier family protein |LOCUS: AT4G27940 |PROD: the same as GENE |13904480..13907249 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +271 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.21 G - 0.24 T - 0.35 C - 0.20 1 aagcattcgt taagaccgtg tgttgtgtgt cgttttttgt cgacgaaaat 51 tagaccggct ctgtttttat tggctcgttt cgattgaaag cgtggctata 101 ATTGGtttaa ccaaaccgaa gtcgacgtct cggtttgttc ggttaagatt 151 aagccttgta gaacattcca aaacgccgcg tcaaagcttt tagggtttga 201 TTCTGCTGTG TGGCTACCCA CTCAAGTCTC CAGTGTTCCT TTGTGGCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.006 +strand -79 : -70 TCgACGTCTC AC RSP00142 Mean Expected Number 0.006 +strand -27 : -21 CGCCGCG AC RSP00234 Mean Expected Number 0.004 +strand -15 : -6 GCTTTTAGGG AC RSP00279 Mean Expected Number 0.004 +strand -11 : -3 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 -strand -3 : -11 AAACCCTAA AC RSP00426 Mean Expected Number 0.002 -strand -67 : -77 ACCGAGACGTc AC RSP00734 Mean Expected Number 0.001 +strand -32 : -25 CAAAACGC AC RSP00941 Mean Expected Number 0.003 -strand -112 : -119 TTTCAATC AC RSP01303 Mean Expected Number 0.006 -strand -2 : -11 cAAACCCTAA AC RSP01594 Mean Expected Number 0.003 +strand -119 : -112 GATTGAAA Totally 10 motifs of 10 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 407. Group RE: DRE1/ABRE1 /AC: RSP00426//OS: Zea mays /GENE: rab17/RE: DRE1/ABRE1 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G28030 |PROD: the same as GENE |complement(13937682..13939150) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +13 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.30 C - 0.18 1 aaaacgttaa aagtttgtta cgtatctttt gtttatgagt tatgacattt 51 agttggtatt tgtgtggctg ccatttctct cggataaaaa ttgaaagaag 101 cgtaaacaaa cagaaaacta tgggctcatA TTGGgcccaa ataatagaaa 151 agcccaaaca tgcgagcttt gaagcttagc aagaagctga ggatgtgatt 201 AGTCCGCGAA AAAATGGCGT TTCTCTGTTC GTCTCTCCCA AGTTCATCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.002 +strand -200 : -189 AAAAcGTTAAAA AC RSP00920 Mean Expected Number 0.001 +strand -192 : -181 AAAAGTTtGTTA Totally 2 motifs of 2 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: senescence-associated protein, putative |LOCUS: AT4G28050 |PROD: the same as GENE |complement(13942013..13943738) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.37 C - 0.16 1 ttcattaatc gtttttcctt ggatgatcaa ttaaataaat tggaacaaga 51 cattctttgg attcatcatg tcagaatttt atttgtcgag acaattttgt 101 cacttccaac aacttaaagg gtgtaaACAA Taaatagcaa aagattttaa 151 cttttagttg tctagctgtc ttaagaacca attagttccg tttaagtccc 201 AACAGATTTC GTAACGGACA AAGTTCCCAA TTCTTTTTTT TTGCATAATA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28100 |PROD: the same as GENE |complement(13965114..13966837) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.28 C - 0.20 1 agttaagaat tcttagttac tactagaact agtagtacaa aacaaaaaga 51 caaggcctat aatttccgga gctaaacaca gtttacaaag ggattataga 101 ctctaaaaca aaccagaaac tgccaaaagt caggaatctc ttgtttttct 151 tccctcacat ctctcttctc tctctcttca caatagtcct ttggacagaa 201 CAAAAGAGAG AGAAGATAGT GAATAATGGA AGGCTGCTTT TCTTCGTGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.002 -strand +14 : +4 TTCTCTCTCtT AC RSP00864 Mean Expected Number 0.001 +strand +5 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -24 : -32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -26 : -34 AGAGAGAGA Totally 4 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: EMB1923 |LOCUS: AT4G28210 |PROD: expressed protein |13990626..13992084 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.23 T - 0.35 C - 0.21 1 catggctgct gcttctcgat tctcggcggg gactgataac ggtagggcaa 51 acgcttaatg cttcttcttc tttcttcagt tattatataa tgggccgtaa 101 gagtaagaag ctattgggcc tacgtctaat tttatcacgg cCCAATgtta 151 aaactcttgc tatgagctat ttgttgttgt tctgggggaa aagctttaga 201 AGTTGAAGAC GACGATGACG CTTTTAGCTC TCTCTTCTTC TCTGTCTTCT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: NADH dehydrogenase-related |LOCUS: AT4G28220 |PROD: the same as GENE |13993003..13998353 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.32 C - 0.19 1 tatttaatca cacataattg gttgcacgat ttccgaatgg cacaagctaa 51 tcaattgtaa ctaacttaag ctaatcaatt gtatgtaact tgaataatca 101 atcgaccaga taaaaaaagg agactttgta tccacgacat ctggattatg 151 gagacactaa gcgtttttaa ttagtgaaaa gtcgctacta aagctcagta 201 CTTGAACTCG GTCAGAGGTT TCTCTTGGAT CTCTTCAACT TTGTCTTCTC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: wound-responsive protein-related |LOCUS: AT4G28240 |PROD: the same as GENE |complement(13997800..13998352) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.08 T - 0.35 C - 0.29 1 cattactcag cactttcaat ttcccccgag atatttcacg ataacttaac 51 catatcgtac cgtatcgctt tcctatacct ggatcccact aatccattgt 101 gcacggtatc gcttatttta gatctttttg aatttaccta tttaccctca 151 ccccaatatc cctctggcta taagtaccaa cctcatctct tcatttcctt 201 CCTACAAAAA TCGAACTAAT CTTCCTTTTT AACAAAAGCT TCTCAAATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00012 Mean Expected Number 0.005 +strand -171 : -158 GATA-- +6 bp --GATA Totally 1 motifs of 1 different REs have been found Description of REs found 12. Group RE: GATA /AC: RSP00012//OS: petunia /GENE: Cab22R/RE: GATA /TF: unknown ||Identical REs AC: RSP00013 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATEXPB3 |LOCUS: AT4G28250 |PROD: beta-expansin, putative (EXPB3) |complement(14000044..14002047) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.26 C - 0.24 1 gctggatcgt gcgaaatcga cgccttaact gtcggtgggt cctaatttct 51 agtggcattt caccgtaaat aagaccaatg gcaaagggac taaaccggca 101 aatagaactt tagaaaacaa aaagagaaac cacagaaagc agtttgcttc 151 taccttttat ttttgtctat ataacaacaa caacattgac atatcaattc 201 ACACATAAAC TCACTCTCAC TCTCTCACTG TCGGCAAACT AACTTATTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.003 -strand -22 : -33 TGTtGTTATATA AC RSP00572 Mean Expected Number 0.007 -strand -7 : -14 ATATGTCA AC RSP01003 Mean Expected Number 0.010 -strand -169 : -178 ACAgTTAAGG Totally 3 motifs of 3 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28310 |PROD: the same as GENE |14017414..14018554 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.25 C - 0.22 1 atggaaaaaa aaatgtcaaa aatagatttg cgtaaatcct taaaaccaaa 51 aaacaaatag aaaaaaaaaa ctgcgggaaa ggaaaataga agaggcgcca 101 aagattttat ttcaagcagc gcggttagag tctcgcgCCA ATaaacatac 151 cgccacaatc tccttctaca taaacagccc taatcctcta tctcaatctc 201 AATCTCTCAT TCATCATCCT CTTTTTTCAA TCTCGTTTAA AATTAACATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.001 -strand -121 : -128 TTTCCCGC AC RSP00404 Mean Expected Number 0.003 +strand -174 : -168 TTTGCGT AC RSP00445 Mean Expected Number 0.004 -strand +27 : +18 AAAAAAGAGg AC RSP00941 Mean Expected Number 0.008 +strand +25 : +32 TTTCAATC AC RSP01594 Mean Expected Number 0.008 -strand +32 : +25 GATTGAAA AC RSP01602 Mean Expected Number 0.007 +strand -10 : -3 TCTCAATC AC RSP01602 Mean Expected Number 0.007 +strand -4 : +4 TCTCAATC Totally 7 motifs of 6 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ribosomal protein L22 family protein |LOCUS: AT4G28360 |PROD: the same as GENE |complement(14029015..14031046) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.22 1 ttttaataag ctcttactaa ttaaacataa gataaaacaa tattattaat 51 ttctcaacaa tcaaatgtgg atagaaacca aaaagataaa ataaactcgg 101 atgtcatagg cccataatcc agccttttct caaagcttaa acgtaacggg 151 ctcggcccaa atttggtgtg ttcatcatct tccccacaaa acctaatttt 201 GTTTCTTCAG TAGTACTGTA GCTTCAGATG CAACTCCTCG AAAACCCGTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.007 -strand -128 : -134 TATCCAC AC RSP00550 Mean Expected Number 0.007 -strand -80 : -90 TGGATTATGgG AC RSP01017 Mean Expected Number 0.005 -strand +6 : -2 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: AAC3 |LOCUS: AT4G28390 |PROD: ADP, ATP carrier protein, mitochondrial |complement(14040745..14043251) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +464 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.30 C - 0.24 1 ttcctaggaa aataaatttt gggtccattt agaagaagtc aagactcggg 51 tcccttaaaa ttgggcccag aaagaaacgg gtcaaaggag tccagtagca 101 ttttcgtaAT TGTaccttct cttctgctca gtttcgtctt ttagtttagg 151 accagaagtc gagaatcatg tagaaaccta ctcttctcgc aattttccac 201 AGCTCTCTCT CTCTCTCTCG TTAACGCTTC GGCGAAAAAT CCACGGTAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.001 +strand -132 : -124 AGAAAGAAA AC RSP00864 Mean Expected Number 0.002 -strand +18 : +10 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +16 : +8 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +14 : +6 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +12 : +4 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +19 : +3 GAGAGAGAGAGAGAGAg AC RSP01757 Mean Expected Number 0.003 +strand -163 : -156 GTCAAGAC Totally 7 motifs of 4 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATA7 |LOCUS: AT4G28395 |PROD: lipid transfer protein, putative |14043946..14044898 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.17 T - 0.24 C - 0.16 1 acaaacaatg aaacaaaccg atacgtattg agagtaccag aatataggca 51 atgatatcgg ctcatgtatt agataacaag acacatcata catgtcatgc 101 gatataaaat aaactcgaat tacatGCAAT aaccttaata tgtgtaggta 151 gattatttca aaagattcaa gaaaactaaa agagaactca gctggaattc 201 ATCCGAGTAA GAAGGAAACA TGAGAACTAC ATGTGTTCAT TAAACTAAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00131 Mean Expected Number 0.010 -strand +37 : +31 AACACAT AC RSP00460 Mean Expected Number 0.004 +strand -112 : -103 tACATGTCAT AC RSP00713 Mean Expected Number 0.005 -strand -7 : -13 CAGCTGA AC RSP01012 Mean Expected Number 0.007 -strand -52 : -58 ACCTACA AC RSP01470 Mean Expected Number 0.004 +strand -115 : -106 TCATaCATGT AC RSP01472 Mean Expected Number 0.001 -strand -49 : -59 TCTACCTACaC Totally 6 motifs of 6 different REs have been found Description of REs found 129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1341. Group RE: Box-I /AC: RSP01472//OS: Pisum sativum /GENE: PsCHS1/RE: Box-I /TF: unknown ||Identical REs AC: RSP01528 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: reticulon family protein |LOCUS: AT4G28430 |PROD: the same as GENE |14057798..14059865 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.29 C - 0.24 1 taaaagagac ggacccactt tgccgccgtc aaatttaaaa aatgcaaaag 51 atttgtcttt tactttcttt cttcatcaac ggctctctga tccacagtag 101 ccggagaaaa agcagagagc tcaaATTGTc ggaattaaga atccccaaat 151 cacatcttca agaaccctaa taaattccca gagattcctc tcatttaatc 201 ACTTCAGATT CGAAAAAAGT TCTCTCTTTT TCCCAAAAAA AACTTTCTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.001 +strand -182 : -175 TTTGCCGC AC RSP00444 Mean Expected Number 0.000 -strand -128 : -141 AAGAAAGAAAGtAA AC RSP00860 Mean Expected Number 0.002 -strand -129 : -137 AGAAAGAAA AC RSP00961 Mean Expected Number 0.004 +strand -158 : -151 TGCAAAAG AC RSP01304 Mean Expected Number 0.006 +strand -40 : -31 aGAACCCTAA AC RSP01614 Mean Expected Number 0.000 +strand +11 : +23 CgAAAAAAGTTCT Totally 6 motifs of 6 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1434. Group TF: GmDof4 /AC: RSP01614//OS: Glycine max /GENE: Synthetic OLIGO/RE: accD P-box /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: casein kinase, putative |LOCUS: AT4G28540 |PROD: the same as GENE |14106979..14110712 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +311 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.31 C - 0.20 1 ttgcgagttg cgtgtttcta aatgcacaaa gcctcaacca caactagtcc 51 gagcacaatt tggtgtgcaa cccacaaaga aatgtttggg ccgattagtt 101 gaaacagttg ggccgggcct attaatagaa gtgttaggcc catttattat 151 tctctttctc tgtactgggt caacttttct ttcgccaaag aaatatcaat 201 CAATTCGTCA CCTTTTTGAT TTGGGGAATG TGACAAAGCA ATCTGGGTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.005 +strand -182 : -175 TAAATGCA AC RSP00861 Mean Expected Number 0.002 -strand -42 : -50 AGAAAGAGA AC RSP01708 Mean Expected Number 0.009 +strand -82 : -73 CTATTAATAG AC RSP01708 Mean Expected Number 0.009 -strand -73 : -82 CTATTAATAG Totally 4 motifs of 3 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: alcohol oxidase-related |LOCUS: AT4G28570 |PROD: the same as GENE |14119460..14122093 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.26 C - 0.20 1 cttttaacgt tggaacataa aaagaaacaa agactttcga gagagaggta 51 gtgaaaactc ttttgaagat gtcaaattct tactcgaaga caaaaagatc 101 tactactaat ctactattat cgtagtcgta caaatattat aactagtgag 151 acccaccagc agaaacaaaa cacaaggaag acttcgtgat aacgagactt 201 GTCTGATTCT TCAATAAGCT CACGGATTTC TCCTCAAAAT CCTAATCCAA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G28660 |PROD: the same as GENE |14149922..14151103 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.27 C - 0.24 1 ccacgtgtgt ttcatgcatc ttaaaaacct ctgagacagc aagagactct 51 ctgactctgt ctaaagccaa aatgggttta ttatatgaca atttgaccaa 101 aatgggctta ttataaacat ctcgggccta aaggtaaaag cccataagtt 151 gagacgatga cggtatccaa atgaaggaac ggctttggta gtgacacgtc 201 ACGATTCTCC CGCCACCACA CCACAGCTTT TTGCTTCATC TCCTTCTTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00989 Mean Expected Number 0.001 +strand +6 : +14 TCTCCCGCC AC RSP00062 Mean Expected Number 0.000 +strand -199 : -183 CACGTG-- +5 bp --CATGCA AC RSP01014 Mean Expected Number 0.007 +strand -33 : -24 CAAATGAAGg AC RSP01015 Mean Expected Number 0.007 +strand -33 : -24 CAAATGAAgG AC RSP01255 Mean Expected Number 0.003 -strand -193 : -200 ACACGTGG AC RSP01258 Mean Expected Number 0.005 -strand +1 : -7 TGACGTGT AC RSP01470 Mean Expected Number 0.008 +strand -189 : -180 TCATGCATcT Totally 7 motifs of 7 different REs have been found Description of REs found 910. Group TF: E2F/DP /AC: RSP00989//OS: Zea mays /GENE: RBR3/RE: E2F/DP IV /TF: E2F/DP 922. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 2 & box 3) /TF: ABI3 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28740 |PROD: the same as GENE |14200995..14202651 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.29 C - 0.17 1 acctcatttg aatacaataa ttatagttaa taaataacat atacatatca 51 tgtaattgtt gatctctctt tgtttttcac cacttgaatt cacagttttc 101 aagccttcag agtaatccaa atattaCCAA Tcccaggctg ataaataaag 151 aaggaaaaaa gtggcctaat atatattcta gaaaatccaa aatcagagag 201 AAGCGTGGCA AGTTTAGGAT CACAGGTCAA TAGAGTGAAA AATGATCCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.004 +strand -76 : -67 tACCAATCCC AC RSP00445 Mean Expected Number 0.006 -strand -127 : -136 AAcAAAGAGA AC RSP00522 Mean Expected Number 0.006 +strand -121 : -115 CCACTTG AC RSP00894 Mean Expected Number 0.007 -strand -111 : -118 AATTCAAG Totally 4 motifs of 4 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G28770 |PROD: the same as GENE |complement(14211328..14213677) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.36 C - 0.21 1 caagtctcaa atatctctaa cctgagtccc cccatcactt gaacttgaac 51 ttctgaagcg ggaagtctct tcacaatgag ctttcctgac cctaagccca 101 tttattcgaa ttctagccca tttagtttgt ttggcctcat caactatatc 151 aaaattttga actattacat taatgataat gaaaattttc gttaattaat 201 AAATTTTCGT TAATGATTAA TTAGTAAGCT TCGGAATATA TCCTATCTGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.004 +strand -144 : -139 AGCGGG AC RSP00681 Mean Expected Number 0.004 -strand +23 : +15 TAATTAATC Totally 2 motifs of 2 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT4G28780 |PROD: the same as GENE |14215551..14217585 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.08 T - 0.34 C - 0.19 1 aatcatttct atatattaat aaatatacaa gttttgacat ttcacttttg 51 ttcctcttaa atatgacacc ttgtttctca ccattagatc gaccgacgac 101 ataagtaata acatttatta catacaccaa aaaaacaagc aaatcattaa 151 tacaattttc cattagtgta tataacaaac aagagactaa tcttttcttt 201 AACATTTCAT AGTATTACAA AACAACGCCA AAAGTCAAAA GGTTTCGCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.007 +strand +36 : +42 CAAAAGG AC RSP00837 Mean Expected Number 0.001 +strand -115 : -106 AGATCGACcG AC RSP01017 Mean Expected Number 0.006 -strand -123 : -130 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycine-rich protein |LOCUS: AT4G29020 |PROD: the same as GENE |14304927..14305727 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.33 C - 0.20 1 aacatgcata tatcatgtca aaagtaactt ctaactaata tcagtgattt 51 acaagagaac aaaatggatt tttttttatg tatacataag agaagtaaat 101 tgtaactctt gacgtggagg gatctgcatc gaacatatag gtgatgagat 151 ggtccaacat tcatttataa cttatccatc tgtcactcta taaccctaat 201 TTTAACCCTT CACTCTTCTA TATAAATCTC CCCCAAGTAC TTAACACTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00091 Mean Expected Number 0.001 -strand +11 : -1 GAAGGGTTaAAA AC RSP00214 Mean Expected Number 0.000 +strand -91 : -84 TGACGTGG AC RSP00215 Mean Expected Number 0.000 -strand -84 : -91 CCACGTCA AC RSP00847 Mean Expected Number 0.001 -strand -49 : -58 CCAtCTCATC AC RSP00913 Mean Expected Number 0.001 +strand -58 : -49 GATGAGATGG AC RSP00914 Mean Expected Number 0.002 +strand -58 : -49 GATGAGATGG AC RSP01275 Mean Expected Number 0.002 -strand -83 : -92 TCCACGTCAa AC RSP01734 Mean Expected Number 0.004 -strand -83 : -89 TCCACGT Totally 8 motifs of 8 different REs have been found Description of REs found 89. Group RE: ARE 76/65 /AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/RE: ARE 76/65 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycine-rich protein |LOCUS: AT4G29030 |PROD: the same as GENE |14307255..14307979 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 1 ttgttatact ccagcaggag cggaacgtta gttaccgtgt cacaaccatt 51 tatttttctg aaagtaaata gaaacttaaa gttgatatca gagcgtttgg 101 ttatagcatt tacaATTGGc attaactatc tacaccggtc gattttattg 151 tatgtggcct ttcttggcct ttaaaaggac ccaacatatc tcccagattt 201 TGGGCAAGGC AACAAACATA ATCAACTTAA ATCTTATCTA CTTTCTATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.003 -strand -43 : -52 GCCACaTACA AC RSP01030 Mean Expected Number 0.007 +strand -131 : -124 AGAAACTT AC RSP01033 Mean Expected Number 0.007 +strand -43 : -34 CCTTTCTTGG AC RSP01205 Mean Expected Number 0.005 -strand -23 : -32 CCTTTTAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29070 |PROD: the same as GENE |14321822..14323313 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +293 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.33 C - 0.16 1 ataaaataat tttttgtttc cttttggata ttatatctaa atataaaaat 51 caaaccgacc gaattactac atacactaca ataatgtttt tttcctttta 101 taatttgtgg gctaaaaaag gtcggtcggc ccattttgag cCCAATaaaa 151 tttagggata gataaagaca taaagtaacg aacgatattc cgaggttgtc 201 ATTTGCTAAG GAAAAAAAAA ACGAAAACGT GTGTCTGTCT CTTCTCGTAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.008 -strand -71 : -76 GCCGAC AC RSP01033 Mean Expected Number 0.005 -strand -80 : -89 CCTTTTTTAG AC RSP01205 Mean Expected Number 0.007 -strand -80 : -89 CCTTTTTTAG AC RSP01463 Mean Expected Number 0.006 -strand -151 : -163 ATTTtTATATTTA AC RSP01598 Mean Expected Number 0.008 +strand -4 : +4 TGTCATTT AC RSP01639 Mean Expected Number 0.010 +strand -7 : +3 GGTTGTCATT Totally 6 motifs of 6 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: zinc finger (CCCH-type) family protein |LOCUS: AT4G29190 |PROD: the same as GENE |complement(14391944..14393379) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.30 C - 0.23 1 cgtccacatc acgaaacggt ccacgtacgt ctatctcgtg gataagtctc 51 cagccgctgt ttcacatgct tatctcacag ctttgttacg ataacctagt 101 cctatgctaa tatctttaac catagttaaa taattttaac caaaccacgg 151 ttaagtgttt caactacata agtagctttg ccggtgtatt acaaacaaac 201 AACACAAACA AAAAAAAAGA ACTCTTTCGT CGACTAATGT GATTTATTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.007 -strand -157 : -163 TATCCAC AC RSP00097 Mean Expected Number 0.002 +strand -185 : -178 ACGGTCCA AC RSP01276 Mean Expected Number 0.003 -strand -173 : -180 GTACGTGG Totally 3 motifs of 3 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G29240 |PROD: the same as GENE |14418611..14420256 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.13 T - 0.25 C - 0.18 1 tgcatccatt caaatgacaa atgtaacaat ttgtcaaaac atgtgattca 51 atattttaca ctaaaatgca ttgaaataac aaagtggaac aaaaggaaaa 101 agaagaaaaa cccgtgatat gattcatGCA ATcataagtt gaacataaac 151 agtaaaactt aacaatacaa aggcaaatgt gacataacta cacaaggaac 201 AAATAAGAAC TCTTTTTGAT AATCTTGTCC CCTCTCTCAT ATCATCAATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.008 -strand -137 : -148 TTAgTGTAAAAT AC RSP00914 Mean Expected Number 0.005 -strand +46 : +37 GATGATATGA AC RSP01136 Mean Expected Number 0.009 -strand -17 : -23 TGTCACA Totally 3 motifs of 3 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: LCR24 |LOCUS: AT4G29285 |PROD: expressed protein |14431532..14432294 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.43 C - 0.13 1 ttttttttta cctttacttt aaataaaata tatataagca tacaaactaa 51 taatatatga tgcttattgt tttttattta aaatgtagaa ctttgactat 101 aTCAATtatt ttggtcaaag tcttcataat tttgtatata tgtttcctat 151 aaagatttat tatagatcat gtaccatttt tcacagtcta taaaaaggtt 201 ATTTCTCTCT ACCATTTTCA ATATCAAAAA GTTTCTTCAA ACAAACAAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.004 +strand -88 : -82 GGTCAAA AC RSP00745 Mean Expected Number 0.001 +strand -8 : +4 aAAAGGTTATTT Totally 2 motifs of 2 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PRF4 |LOCUS: AT4G29340 |PROD: profilin 3 (PRO3) (PFN3) |14447653..14448704 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.25 C - 0.19 1 tagacgtggc aaatagcgaa acaatgattg agctataaca aaggcgaaac 51 ttgagcggca ctaattgaaa atcactcctt gtttttttga agaaaaagta 101 agatgtaggg ctgagaattc gtctatgtga tccaacggtt ttaaaatgat 151 ccttgttcct tcctctccta tttatctgaa ggacgaagtc cccacgctgc 201 ACATAACCGG GGCACTTAAC GTATAGATCA TAAACAAAGA AGAAGAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00819 Mean Expected Number 0.003 -strand -191 : -200 GCCACGTCTa AC RSP01034 Mean Expected Number 0.007 +strand -197 : -191 ACGTGGC Totally 2 motifs of 2 different REs have been found Description of REs found 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glycosyl hydrolase family 17 protein |LOCUS: AT4G29360 |PROD: the same as GENE |complement(14451419..14453869) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.38 C - 0.20 1 tctttttaat attatttttt attattataa atctaaaaaa gttttttttt 51 tttttttttt ttgttctcga agcagtaaaa tctactacaa cagtcaaaga 101 gagagagcaa acatgctcgc ttaattcacg gaatcgagac gtttctacaa 151 actcaatttt atattttcag ctggaatccg aactctgata tagaaagcac 201 ACAACGTTCA CCTCCAGTGA CTTCTCTCTA TCTCTAAATC TCTCTTGCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00698 Mean Expected Number 0.006 -strand -73 : -83 TGAATTAAgCG AC RSP00713 Mean Expected Number 0.006 -strand -28 : -34 CAGCTGA AC RSP00864 Mean Expected Number 0.000 +strand -103 : -95 AGAGAGAGA AC RSP01527 Mean Expected Number 0.001 +strand -57 : -46 TCtACAAACTCA AC RSP01614 Mean Expected Number 0.000 +strand -168 : -156 CTAAAAAAGTTtT Totally 5 motifs of 5 different REs have been found Description of REs found 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1434. Group TF: GmDof4 /AC: RSP01614//OS: Glycine max /GENE: Synthetic OLIGO/RE: accD P-box /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RPS15AE |LOCUS: AT4G29430 |PROD: 40S ribosomal protein S15A (RPS15aE) |14472408..14473627 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.27 T - 0.28 C - 0.12 1 catggtgttt cttgatttgg gaaattgaag gaaaggaaga agacgaagga 51 gagaaggagt tatagaaatt tggaggtacg tgtggttaaa atcccgcacg 101 tgttaaaATT GTaaacgact aaactaccct tatgaattct ggaaaataac 151 aaacgtgtca tagagtgaag aaaaaccctt attgttttct agatttctcc 201 GATTTGTGTA GTATCGTCGG GATTTTTTGA CCGGAGAAAT GGGGAGGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -106 : -97 CGCACGTGTt AC RSP00383 Mean Expected Number 0.007 -strand +32 : +26 GGTCAAA AC RSP00524 Mean Expected Number 0.007 -strand -98 : -104 ACACGTG AC RSP00613 Mean Expected Number 0.005 -strand -185 : -192 ATCAAGAA AC RSP01035 Mean Expected Number 0.007 +strand -48 : -42 ACGTGTC AC RSP01152 Mean Expected Number 0.003 -strand -117 : -126 CACACGTaCC AC RSP01676 Mean Expected Number 0.000 -strand -93 : -110 TTTtAACACGTGCGGGAT Totally 7 motifs of 7 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1494. Group TF: MYC2 /AC: RSP01676//OS: Arabidopsis thaliana /GENE: ERF1/RE: ERF1-GBOX /TF: MYC2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29520 |PROD: the same as GENE |complement(14493920..14495735) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.22 C - 0.21 1 acacatacaa aaaaacaaaa cagtaattat ctaacatggt cgagaaagtg 51 gacccaagtt cgtgtcagca ttccaacagc caataagatt gcaggaaaca 101 cgttaacaag cgtaacatcg attccacttc atgaacacgg cacaggatca 151 aaacccagag aattctttaa acccatgatc ttctatatag aacccgtgaa 201 AGAATTTTAT TAAAGTCCCA AACTTTACCA TATTTAAGAG AGATAGAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01192 Mean Expected Number 0.002 -strand -143 : -152 CTTGGGTCCA Totally 1 motifs of 1 different REs have been found Description of REs found 1103. Group RE: D-box /Group TF: D factor /AC: RSP01192//OS: Nicotiana tabacum /GENE: Adh2/RE: D-box /TF: D factor ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29550 |PROD: the same as GENE |14502218..14503853 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +221 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.23 C - 0.20 1 tctgtacacg gaatgcaaag aaagggggaa aacaaaaatt tgagaaaaga 51 taaaagacgt tactgttgac cggtgaccaa gtagacaata gccggcgacg 101 aaataagcgg gaatatcgtt atCCAATttg acgattggtc caaaaccaaa 151 tgagcctagc agagcggaat gaaaatacat cggtctaaac gacggcgttt 201 ATCTGAATAT TTATTGCCTT TCTACTTGTC TCCGTTGCCA TCCGCCAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.003 -strand +30 : +21 GACAaGTAGA AC RSP00337 Mean Expected Number 0.010 +strand +7 : +15 ATATTTATT AC RSP00716 Mean Expected Number 0.003 +strand -60 : -52 CAAAACCAA Totally 3 motifs of 3 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 323. Group TF: SEF1 /AC: RSP00337//OS: Glycine max /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/RE: SEF1 BS /TF: SEF1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29590 |PROD: the same as GENE |complement(14512555..14514449) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.28 C - 0.21 1 tctaattttt gtaacaataa acgttattat atttttacag ttactcccca 51 taactttgta aaaagtaaag aaaagcccca aacagagaga aacgaccacg 101 taagagtggt ttggatcact aaactcgaat cgtcatcttc atcgatcgat 151 atgcgacaca tcatcttcat cgtcatgttc tgtcttgcaa agttcaaacc 201 TTTTTACAAA TCAGACAAAA CCCAACAATT AATGAAACAA TGTCAAAAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -141 : -130 AAAAAGTAAAgA AC RSP00247 Mean Expected Number 0.003 +strand -106 : -97 aCCACGTAAG AC RSP00442 Mean Expected Number 0.009 +strand -150 : -141 TAACTTTGtA AC RSP00442 Mean Expected Number 0.008 -strand -6 : -15 gAACTTTGCA AC RSP00915 Mean Expected Number 0.006 -strand -36 : -45 GATGATGTGT AC RSP00997 Mean Expected Number 0.005 -strand -36 : -45 GATGATGTGT Totally 6 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: EMB2752 |LOCUS: AT4G29660 |PROD: expressed protein, predicted proteins |complement(14534269..14535298) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.33 C - 0.13 1 atagtgaaaa acaaatacat agcacaatgg ttacaataat catgtgttgt 51 gattacaatt tacaaattta caagaatcat atcaaataag attttttaaa 101 aatttacaaa tgtgagctca agacttttaa gtgttaaaga taagttaagg 151 gctgaaaact aaaacatgta ggaataagag gactgtttgg taaacgtttt 201 AACGTTTAAA GTCTTGCCTT TTGATATCAG ATTTTTCTCA GGTTCCCACG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.007 -strand +23 : +17 CAAAAGG AC RSP00548 Mean Expected Number 0.001 -strand -167 : -177 GTAACCATTGt AC RSP01458 Mean Expected Number 0.009 +strand -143 : -131 ATTTAcAAATTTA AC RSP01458 Mean Expected Number 0.009 +strand -107 : -95 tTTTAAAAATTTA AC RSP01469 Mean Expected Number 0.009 -strand -86 : -95 TCACATtTGT Totally 5 motifs of 4 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: thioredoxin family protein |LOCUS: AT4G29670 |PROD: the same as GENE |complement(14535548..14537256) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.28 C - 0.15 1 acatagatgg catttaagta aataagtttg ttatgtgtgt aaagaaaaaa 51 gcattactta tctgcgttcc gtgttaaaac acgattctaa cggagaaaca 101 aaaacgcgtt tacgcttttt caactatcat atcgacaaaa cgccaagtgg 151 atgatggcgg tttaaacgct atttaatgtt gaaaaatcgc gtctatgtat 201 AATTGGAGAG ACATGATGAG AGAAATATCA CTGGAATCTG AACCAGACAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.005 +strand -59 : -50 GCCAAGTGGA AC RSP00734 Mean Expected Number 0.003 +strand -65 : -58 CAAAACGC Totally 2 motifs of 2 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29735 |PROD: the same as GENE |complement(14562645..14564384) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.20 T - 0.26 C - 0.16 1 tcgaaaatgg taaaggatca cattgcactt tgaataaagt tatacaacgt 51 taaaagaaga taaagatatg aacacatttt atatcaaagg ccttaataag 101 tatatttggg cctattaaat cgaaccttta aacagaaaaa ctggcccata 151 aaataaccgt ggttgtgtta taacaagccg gttaagtaca aaccggaagc 201 GACTCGTGTT TGTTTAGTGA AGCGATCAAG CGAGCGAGAT CAGTCAAATA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00313 Mean Expected Number 0.001 +strand -182 : -172 CACATtGCACT Totally 1 motifs of 1 different REs have been found Description of REs found 299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29820 |PROD: the same as GENE |complement(14595686..14597487) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.31 C - 0.24 1 gcaaaagacc caaatttgaa acagagactt tgattctcgt tttttagtta 51 taaaatagaa actcgcgtcg tttttagtag ttggaaacaa tagagtgttt 101 aacatcgttc cgtattcttg tttactacta aaggcccatt aatatcgtaa 151 caggcccatt aatatcttct tcctcactct cccgccgtcg tcagctaatt 201 GCGGAGAAGT ACTCTCTGGA GCCGCCACGT CTCAGTGATC CGACTACGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.007 +strand +20 : +26 AGCCGCC AC RSP00057 Mean Expected Number 0.008 +strand +24 : +33 gCCACGTCTC AC RSP00204 Mean Expected Number 0.002 -strand +33 : +24 GAgACGTGGC AC RSP00426 Mean Expected Number 0.001 -strand +36 : +26 ACtGAGACGTG AC RSP00819 Mean Expected Number 0.004 +strand +24 : +33 GCCACGTCTc AC RSP00892 Mean Expected Number 0.003 +strand -42 : -34 TTAATATCT AC RSP00989 Mean Expected Number 0.001 +strand -23 : -15 TCTCCCGCC AC RSP01034 Mean Expected Number 0.009 -strand +30 : +24 ACGTGGC AC RSP01599 Mean Expected Number 0.008 -strand -180 : -187 TTTCAAAT AC RSP01630 Mean Expected Number 0.000 +strand +19 : +28 GAGCCGCCAC Totally 10 motifs of 10 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 407. Group RE: DRE1/ABRE1 /AC: RSP00426//OS: Zea mays /GENE: rab17/RE: DRE1/ABRE1 /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 910. Group TF: E2F/DP /AC: RSP00989//OS: Zea mays /GENE: RBR3/RE: E2F/DP IV /TF: E2F/DP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown 1450. Group RE: GCC-box /Group TF: TaERF1 /AC: RSP01630//OS: Triticum aestivum /GENE: Synthetic OLIGO/RE: GCC-box /TF: TaERF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein, predicted protein |LOCUS: AT4G29870 |PROD: the same as GENE |14606007..14606680 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +11 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.24 C - 0.23 1 ggaacaccga gaaagagaaa gcctttgaaa ctctccctta tatcaaaaac 51 tacgtgtcgt ttaatattaa cttttttcta aaacggcaca atgtgcaaat 101 gtattcatat agcggataAC AATatccaag tttccaaaca aaccaactct 151 gaaactgttt cactcacata ataagagaac gaagagctaa ttgctgaaga 201 ATCCGACGAA AATGGCTCCG AGATCAGATT CACAAACCCT AGCCACCGGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.003 -strand -143 : -152 GACACGTAGt AC RSP00070 Mean Expected Number 0.002 +strand -150 : -143 TACGTGTC AC RSP00861 Mean Expected Number 0.003 +strand -191 : -183 AGAAAGAGA AC RSP01035 Mean Expected Number 0.007 +strand -149 : -143 ACGTGTC AC RSP01260 Mean Expected Number 0.002 +strand -151 : -144 CTACGTGT AC RSP01600 Mean Expected Number 0.006 -strand -171 : -178 TTTCAAAG Totally 6 motifs of 6 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29960 |PROD: the same as GENE |complement(14660608..14662393) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.28 C - 0.14 1 tagtcctcaa ttttggatgg ataagttttt aacaacataa ttttattatt 51 ttgtccaaaa tttcactttt ggtaaagaac caggatgttt tgtgcaattt 101 actagaaata caaaactaaa taACAATgtc acaagcatag gtgacgtgtc 151 caactttaat tggataagct gacgaaggag cagagcaaaa tttcacctcc 201 AAAGAAAAAA ATTATCAGAC TTTCAGAAGA AGAAAAAACG AAGGAGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.005 -strand -152 : -160 ATAATAAAA AC RSP00270 Mean Expected Number 0.002 +strand -139 : -129 TtCACTTTTGG AC RSP00997 Mean Expected Number 0.002 +strand -61 : -52 GGTGACGTGT AC RSP01035 Mean Expected Number 0.005 +strand -57 : -51 ACGTGTC AC RSP01094 Mean Expected Number 0.006 +strand -44 : -33 TAATTGGATAAg AC RSP01258 Mean Expected Number 0.002 +strand -59 : -52 TGACGTGT AC RSP01280 Mean Expected Number 0.000 +strand -61 : -51 GGTGACGTGtC AC RSP01601 Mean Expected Number 0.003 +strand -140 : -133 TTTCACTT AC RSP01621 Mean Expected Number 0.005 +strand -139 : -130 TtCACTTTTG AC RSP01654 Mean Expected Number 0.005 +strand -61 : -52 GGTGACGTGT Totally 10 motifs of 10 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G29980 |PROD: the same as GENE |complement(14664960..14665589) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.07 T - 0.30 C - 0.25 1 tcataaaact atcagtgtat tatcatccca tcattaccgt tactatcagt 51 atcattcaaa atcagccatg aatcatgtta aatgcacttg aaaatactta 101 tagctctttg cattctccaa ctacaaccaa atacaaaact aatttacatg 151 attcacctaa cagattattc ttttatataa acaaaaaaga agaaccctcc 201 AACACTACAA CAATTTTCAT ACCTCATATT CTCTTCCATG GCAACCACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00642 Mean Expected Number 0.008 +strand -122 : -115 TAAATGCA Totally 1 motifs of 1 different REs have been found Description of REs found 617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: peroxidase, putative |LOCUS: AT4G30170 |PROD: the same as GENE |14762847..14764633 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.07 T - 0.35 C - 0.22 1 caaatataga acattaaaat actaactcga tgcctcacct tagcctcctc 51 tcaaattgtc aatatctaga tggagtgtta catccacatt cctaacagtt 101 tttactcttt attttaatat atccttcaac agatcatcat cagaataatc 151 atcaaatcat tattatatat ttaactagcc caaattgtac catacctatc 201 AATTTAAATT TCTCTTTCTA TCTACTATAA AAAGTGACTC TCTAAGAACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00574 Mean Expected Number 0.007 +strand -60 : -53 CAGAATAA AC RSP00861 Mean Expected Number 0.005 -strand +19 : +11 AGAAAGAGA AC RSP00871 Mean Expected Number 0.009 -strand -162 : -171 GGTGAGgCAT Totally 3 motifs of 3 different REs have been found Description of REs found 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: small nuclear ribonucleoprotein F |LOCUS: AT4G30220 |PROD: the same as GENE |complement(14802961..14804329) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.34 C - 0.22 1 gaaaccattc ttcttgccgg ttttatgtca ttaggttgga atgcatgtcg 51 tttttgtcat gtattatttg ttttcacttt tatggagatt tcacaaagca 101 agccagttga aCCAATaatg ggccttatga gatattttcg caggcccatt 151 atcttctgta cagcaacgaa taaacccagc caaaaaccct aaatcgagag 201 AAACCACAAG CGTATCGATA TTTGTTCTCC CAGATCTTCG TTTCGTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -9 : -17 TTAGGGTTT AC RSP00319 Mean Expected Number 0.002 -strand -43 : -51 CAGAAGATA AC RSP00369 Mean Expected Number 0.001 +strand -17 : -9 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 +strand -18 : -9 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: small nuclear ribonucleoprotein E |LOCUS: AT4G30330 |PROD: the same as GENE |complement(14836558..14838024) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.35 C - 0.08 1 tgattttgct gtctttaaac tctgtttctt aagtcgtttt tcagtgtttt 51 ggagatagta gtaatgggtc taaaaagtta aataatgttt ttgtggggag 101 aaaaatgaaa atagcagatt ttcgaggatg ggaagagtaa aacatatatt 151 tgagaagtcg aaaagtgtga aatatttgtt ctgtctcgcg aggaagagag 201 AAAAATCGAA TTAGAAATTG CAAGTTTTAG GGTTTTAGAA AATCTATCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.005 +strand +27 : +35 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 -strand +35 : +27 AAACCCTAA AC RSP01195 Mean Expected Number 0.001 +strand -30 : -18 AATATTTgTTCTG Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30390 |PROD: the same as GENE |complement(14862015..14863191) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +279 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.29 C - 0.20 1 tcaattcgac ggtattaaga aactaaacta aacatattca agcccgcgta 51 tccagattgg tgggcttgag agtgtagttt taaagcattt taacactcaa 101 caaaattcga tggcttTCAA Tttaacttcg gcccatcgtt agggagcccc 151 gttcactgaa agacaaacat gttatcacaa tctctaattg gtaggatcga 201 AACTTCGAAA GATTTAGCGA TTTTTACAAA CGCCGCGTTA CGCGTTTATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.003 +strand +31 : +37 CGCCGCG Totally 1 motifs of 1 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: cinnamoyl-CoA reductase-related |LOCUS: AT4G30470 |PROD: the same as GENE |14894111..14896819 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.27 C - 0.15 1 tttctgaaag aagacacacg ttccaaaatt gtcaacacgt aaacaaaaac 51 caataaggga ttgacttgtg gatattggat aaccaagcaa ttaattaaga 101 tggtttagag acgtaaaatg attaattaag aaatagtact aatactttat 151 tggaaaataa gagatgaggt ataataaaag atgagtagct gggaacgtgc 201 AACAGAAAAA TAGTTCACCC AACTTTCTCC TATTAATACT TGCCTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00681 Mean Expected Number 0.006 -strand -73 : -81 TAATTAATC AC RSP00750 Mean Expected Number 0.005 +strand -54 : -43 TTATTGgAAAAT AC RSP01152 Mean Expected Number 0.001 +strand -186 : -177 CACACGTtCC AC RSP01261 Mean Expected Number 0.007 -strand -159 : -166 TTACGTGT AC RSP01678 Mean Expected Number 0.004 -strand -49 : -60 CAATAAAgTATT AC RSP01713 Mean Expected Number 0.000 +strand -168 : -157 CaACACGTAAAC AC RSP01725 Mean Expected Number 0.002 +strand -94 : -83 AGAgACGTAAAA Totally 7 motifs of 7 different REs have been found Description of REs found 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs 1521. Group TF: STF1/HY5 /AC: RSP01713//OS: Arabidopsis thaliana /GENE: PIN1 (At1g73590)/RE: C/A-box /TF: STF1/HY5 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: tetratricopeptide repeat (TPR)-containing protein |LOCUS: AT4G30480 |PROD: the same as GENE |14897352..14899127 |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.32 C - 0.20 1 ttttttttaa atgatatgtt cttacctgag aataatgtga attggattta 51 tactaaaaac accaaattat aagaacagta cttttgcgaa caaagatctt 101 attcacaaaa ccatatgata tacttaatgg gCCAATacca ggcctgagat 151 tgcctaacgt cgttagtaaa acccgtttaa ccagctaaag tataacgtcg 201 TCGTTTAAAC AAGGCATCTT GACCCTTCTT CTTCTCTATC GAGTGCTCTG 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30500 |PROD: the same as GENE |14903496..14904923 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.23 C - 0.20 1 cgaaagccca aattaagaat ctttgtccta aacccaagga aaagcgtaat 51 tacgacacgc agccaaacaa aacatttcct gcgtgaaaaa agtatttgag 101 aaaagaggac gacaaaaagg tacaggtgtc aatatataAT TGGattaaac 151 aagcttagac acctaaaagt tttctctcac accatttgtg aagatccaaa 201 GCAAAAGAAG AATTACAGAA ACTGAAAAAA CTATCTTCCT CGTCTCTTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 +strand +37 : +46 TCCtCGTCTC AC RSP01031 Mean Expected Number 0.006 +strand -185 : -178 AGAATCTT AC RSP01087 Mean Expected Number 0.003 -strand -76 : -83 CTGTACCT AC RSP01094 Mean Expected Number 0.003 +strand -64 : -53 TAATTGGATtAA AC RSP01499 Mean Expected Number 0.001 +strand +36 : +45 TTCCtCGTCT Totally 5 motifs of 5 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1005. Group TF: CRR1 /AC: RSP01087//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 1 /TF: CRR1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G30550 |PROD: the same as GENE |14925416..14926864 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +208 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.36 C - 0.10 1 aataataata ataaattacc gataaacaaa aagaagaaga ctggtatttg 51 taattttaat ttagtcattt ataagtgggt ataggttacg tgtataaata 101 gattatttga tcttcaaaaa atacacgtaa aatcgagcta cggtaaacaa 151 ataaatgtga ttctaaactt agataaatta ttaggtggag ttgtcatctt 201 ATAGACAGCT AATCTCGATG TGTGATTCTT TTTTTTTCAA CTAATTTTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.003 -strand -149 : -160 TAcAAATACCAG AC RSP01261 Mean Expected Number 0.004 +strand -115 : -108 TTACGTGT AC RSP01261 Mean Expected Number 0.003 -strand -71 : -78 TTACGTGT AC RSP01725 Mean Expected Number 0.001 +strand -80 : -69 AtACACGTAAAA Totally 4 motifs of 3 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30620 |PROD: the same as GENE |complement(14948592..14950078) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.37 C - 0.22 1 aaatacatgt ttttgcataa ttctcaattt ctcatattat tattggaccc 51 aaatcctgtg aaaataatct cttctttggg ctttttctca tataagcatc 101 aattttaaaa gcccattaaa cCCAATtaag ggatcctcaa gcttttccac 151 gtggcacaat cttattagtc tttaagaaac atatctcgtt ctttctgttt 201 ATCTTGTCGA AGCACACTTC TCTGTTTCAG GAGAACAATG GCTTCGACGG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -55 : -46 tCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -46 : -55 GCCACGTGGa AC RSP00153 Mean Expected Number 0.001 +strand -54 : -45 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -53 : -46 CACGTGGC AC RSP00189 Mean Expected Number 0.002 +strand -55 : -46 TCCACGTgGC AC RSP00340 Mean Expected Number 0.005 +strand -55 : -46 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 -strand -46 : -55 GCCACGTGGA AC RSP00683 Mean Expected Number 0.005 -strand -46 : -55 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -54 : -47 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -47 : -54 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -55 : -46 TCCACGTGGC AC RSP00838 Mean Expected Number 0.008 -strand +50 : +45 CCGTCG AC RSP00938 Mean Expected Number 0.000 -strand -45 : -56 TGCCACGTGGAA AC RSP01003 Mean Expected Number 0.008 +strand -79 : -70 cCAATTAAGG AC RSP01016 Mean Expected Number 0.005 +strand -26 : -19 AGAAACAT AC RSP01034 Mean Expected Number 0.003 +strand -52 : -46 ACGTGGC AC RSP01591 Mean Expected Number 0.000 +strand -55 : -43 TCCACGTGGCACa Totally 17 motifs of 15 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1414. Group TF: GBF /AC: RSP01591//OS: Glycine max /GENE: SRS-4/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30630 |PROD: the same as GENE |14950644..14952382 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +410 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.27 C - 0.21 1 tctttacata catatccaac aatattaact ctttcatctc ttcaataacc 51 cagatgtgct ttttaattca aattctttac aatttatcaa acccacctca 101 caaagacatg aacCCAATca tcaacaaaca caataaaagg aagaaccttt 151 tttttgggtt aagtggtcag catttcaata ccccttctgc aacttccaaa 201 AGGACACACA TAGAAATAAT AAGTGAAAAA GAAAGAAAGA AATGAGAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00145 Mean Expected Number 0.005 -strand -41 : -46 AACCCA AC RSP00444 Mean Expected Number 0.000 +strand +29 : +42 AAGAAAGAAAGAAA AC RSP00525 Mean Expected Number 0.007 -strand -144 : -150 ACATCTG AC RSP00860 Mean Expected Number 0.005 +strand +30 : +38 AGAAAGAAA AC RSP00860 Mean Expected Number 0.005 +strand +34 : +42 AGAAAGAAA AC RSP01527 Mean Expected Number 0.005 +strand -80 : -69 TCAACAAACaCA AC RSP01601 Mean Expected Number 0.009 -strand +28 : +21 TTTCACTT Totally 7 motifs of 6 different REs have been found Description of REs found 141. Group TF: SEF3 /AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 2 /TF: SEF3 ||Identical REs AC: RSP00338 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30760 |PROD: the same as GENE |14982528..14983425 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.25 T - 0.29 C - 0.23 1 agggactttg tgaatttagg gattttatta tagcggtggc tggctgatga 51 gcgactttgt gaatttaggg tctgtctgtc aatttggcgg gctgtccatg 101 ggccaagcgt ctttcgcagg tttttgggcc caagcctact aagtgccagg 151 tccagcccat taagatccta tatcaaagat agggcacaat tgtagtaacc 201 ACCCTAATTT CACAAAGTCT CTCAATAACC ATGTGTGCTC CGCAGCCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.002 -strand -170 : -178 ATAATAAAA AC RSP00877 Mean Expected Number 0.001 -strand -110 : -118 CCCGCCAAA AC RSP00943 Mean Expected Number 0.002 +strand +5 : +15 TaATTTCACAA AC RSP01006 Mean Expected Number 0.009 +strand -3 : +4 ACCACCC AC RSP01221 Mean Expected Number 0.002 +strand -5 : +3 TAACCACC AC RSP01305 Mean Expected Number 0.002 +strand -3 : +7 aCCACCCTAA AC RSP01596 Mean Expected Number 0.002 -strand +15 : +5 TTGTGAAATtA Totally 7 motifs of 7 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown 1198. Group RE: Telo box /AC: RSP01305//OS: Nicotiana tabacum /GENE: Thio h2/RE: Telo box /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G30820 |PROD: the same as GENE |15006495..15008542 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +655 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.36 C - 0.13 1 ataggactgg gtattaatct ggtaacggat ataatactgg ggtagaaaat 51 agaatttaga ctagtattgg gggtctaaac gaaattatac agaagcattg 101 ggcttgactt ggcccatgag acctaagccc atattttaaa gaattagggg 151 tttcttcttc ctttgtctgt tcaaattgaa gaaacctgtt tttttttttt 201 TTTTTCTGGA AGTGAATTGT CTTGAGTTGA ACATTGAACT TCAATTGGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.005 -strand -54 : -64 CTAATTcTTTA AC RSP00727 Mean Expected Number 0.008 +strand -99 : -93 GCTTGAC Totally 2 motifs of 2 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: WD-40 repeat protein family |LOCUS: AT4G30840 |PROD: the same as GENE |complement(15017625..15019741) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.33 C - 0.18 1 ggacagaatg agacgaagct actgtgttgt aaggtcagca ttttcacttt 51 tcccggaatg agagattatc agactttaca tgttgataag ggtaatgttt 101 tttttttcta atacagctaa agactgaggg tgcttaggta atttaacttg 151 aaattctgaa gcttctaatt tttcccacca ttgttctcgt ttagctcggc 201 TAAAACCCTA GAAAACCTCT GGAGCTATGG AGATGATGCA GGATTCGTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00228 Mean Expected Number 0.001 +strand -164 : -153 AgCATTTTCACT AC RSP00495 Mean Expected Number 0.006 -strand -121 : -128 TGTAAAGT AC RSP01601 Mean Expected Number 0.009 +strand -159 : -152 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: FAD6 |LOCUS: AT4G30950 |PROD: omega-6 fatty acid desaturase |complement(15056981..15059794) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +115 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.35 C - 0.16 1 aattatcttt aacaaaaaat tgataattat ctaacccttt tttttcccca 51 ataattctta accatttttg ttattctgta ttaaataaat attgactatt 101 aatcATTGTt tcgacttttc tagtatgcaa aattttagtt tctgacaaaa 151 aaaaaaagac tgaaaaaaac aaaaacccaa ctttaaaatt gtggaagtcc 201 AATTTGCTGA AGAAGGTGAA GAGGTGAGGG CTCTTCACAG CCATTCAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.002 -strand -158 : -169 AAAAAAgGGTTA AC RSP00574 Mean Expected Number 0.009 -strand -123 : -130 CAGAATAA AC RSP00615 Mean Expected Number 0.007 -strand +28 : +23 CTCACC Totally 3 motifs of 3 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G30993 |PROD: the same as GENE |15098073..15100564 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.32 C - 0.16 1 ccttgtatga aattttgtta atctcatagt agaagcaatc agagataata 51 aatcacttat gagtctacgt ttcaatttga atgttctcaa tcttttttat 101 tccattttat ctaaatgacg acgaaagaga tttaaaagcg aaagcaactg 151 caaacttatc gtgacaaatt tgggtaacta gtcatcatca tcaagctaat 201 GTTGCAGTCT CTTACTACCA CTAAAATAAG AAGACAAAAC ATTAAAATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.003 -strand -128 : -137 GAaACGTAGA AC RSP00431 Mean Expected Number 0.010 -strand -46 : -57 GTTtGCAGTTGC AC RSP00879 Mean Expected Number 0.007 +strand -62 : -56 CGAAAGC AC RSP01086 Mean Expected Number 0.006 +strand -137 : -128 TcTACGTTTC AC RSP01602 Mean Expected Number 0.005 +strand -116 : -109 TCTCAATC Totally 5 motifs of 5 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: proton extrusion protein-related |LOCUS: AT4G31040 |PROD: the same as GENE |complement(15111491..15114132) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +245 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.30 C - 0.14 1 aaagtggaat ttacttaaaa tttatttctg taaatataca gtcattcaat 51 ttttagccaa tcaaaaacga cggaaacaac aattttgact ctacaaaata 101 atatgtaaat gtaattaatt atttgaaacc aaaaaaGCAA Tctttatgga 151 taacagatat tttacaagct taatttgaag aagaagataa caaaacaaaa 201 AAAAGAGCGT GGCTTTATCT ATCATCTGGT ATCCACTATC CACAACTGGG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00838 Mean Expected Number 0.005 -strand -128 : -133 CCGTCG AC RSP01058 Mean Expected Number 0.005 -strand +38 : +31 TAGTGGAT AC RSP01063 Mean Expected Number 0.002 -strand +25 : +14 ATGATAGATAAa Totally 3 motifs of 3 different REs have been found Description of REs found 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: protein kinase family protein |LOCUS: AT4G31170 |PROD: the same as GENE |complement(15153188..15155659) |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +807 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.20 T - 0.22 C - 0.18 1 atgtgtattg ctcggaatgg tagagcgcgt gtgagacact ttctatcgga 51 gagagtattg ctcggaagct gtcccaatta ataaaaaaac gaatttgcca 101 gcaaaggacg gaccaaaatt aaataaaaat cccaaaaaaa acaaattaat 151 aataaaaaaa aaaaagagag aaaatcggag tctggaaaaa aagagtaaat 201 GGGAAGCGAC GACTGACTCT TCTTCCTCCT CCTCCTCCAC CTCTTGTTTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.006 +strand -41 : -32 AAAAAAGAGA AC RSP00523 Mean Expected Number 0.003 -strand -169 : -175 ACACGCG Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PBA1 |LOCUS: AT4G31300 |PROD: |15188769..15191159 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.25 T - 0.25 C - 0.14 1 cttcaccgtg ggagcaaata actgaaatgt gtatcgagct tgtatttgga 51 agatccatgg acaagtaggt attgggcttg tatttggaag ggccatgagg 101 acaaatatgt ATTGGgcttt tatttggaag gtccatgagg acaaatagat 151 attgggcttt cacgtttttt atctgtcgcc taacaaaaca aaaaaaaaaa 201 GTAAAACCAA AAAAAAGAAA GGAGAGAGGC CGACTTGGGG TATAAGCCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -5 : +7 AAAAAGTAAAAc Totally 1 motifs of 1 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G31410 |PROD: the same as GENE |15243729..15245844 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +536 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.34 C - 0.15 1 actatttgtg aaatactaac ctgtagtata tttttgatta tgttatttta 51 ttaaaaaagt cgtcataaaa tattttagat taatgaaaga aaccttccat 101 taattaatat attaaggata ttaaaatagc tgctaatagt ttaattagtg 151 tattgaaaag gtaaaaatgg ttatggggat tgagagaaaa aagctaccaa 201 CTGCGAAACA CTATCCCCAC AAGCAAACCC CATCATCTCC CTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.002 -strand -164 : -175 TCAAAAATATaC AC RSP00741 Mean Expected Number 0.005 +strand -45 : -34 AAAAGGTaAAAA AC RSP00915 Mean Expected Number 0.002 -strand +37 : +28 GATGATGGGG AC RSP01602 Mean Expected Number 0.004 -strand -16 : -23 TCTCAATC Totally 4 motifs of 4 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G31450 |PROD: the same as GENE |complement(15255634..15258818) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +835 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.32 C - 0.20 1 cgtaatctct accaaccgtc agatattccg accccattat cgacggcgag 51 gatctctgcg tcttcgtcat ctcagattct ttctttcgat ataaaattta 101 atgaatattt gctttaaggt cattatggaa taaaaacaaa tatttgattt 151 attcttaatt ccaaaaagat aaattactta aaataacata ataaaaaacc 201 GAAGAAAAAA TATCGGCAAC AAGAACAAAA CGCTCTTCTA TTTTTCTCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.009 +strand -95 : -85 TATTTGCTTtA AC RSP00734 Mean Expected Number 0.004 +strand +26 : +33 CAAAACGC AC RSP00739 Mean Expected Number 0.001 +strand -195 : -184 TcTCTACCAACC AC RSP00838 Mean Expected Number 0.005 -strand -155 : -160 CCGTCG AC RSP01068 Mean Expected Number 0.009 -strand -178 : -186 TCTGACGGT Totally 5 motifs of 5 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 701. Group RE: Box 1 homolog (2) /AC: RSP00739//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog (2) /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ribosomal protein L28 family protein |LOCUS: AT4G31460 |PROD: the same as GENE |complement(15259475..15261197) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +344 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.29 C - 0.22 1 ttgggataat ggtttggtct atgttagatg ttattgactt tttatccgga 51 ttgacaaatt agaaccgatt aaaaccgaac cgtaaattaa tgagagaatt 101 aatttgggcc taagagccaa cgaattaaaa aagcccaacg cttcaaaact 151 cagaaattga accctatggc taagatcgac gccggttctc atcgccggcc 201 GAAACCTCGA CTCGTGCCAT CGTCAGTTTC ATTTCTGCTT CTTCTCTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00837 Mean Expected Number 0.004 +strand -28 : -19 AGATCGACGc Totally 1 motifs of 1 different REs have been found Description of REs found 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: WRKY11 |LOCUS: AT4G31550 |PROD: WRKY family transcription factor |complement(15289977..15291545) |SUPPORT | 3 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.32 C - 0.33 1 tgccaggggt gggtcccagt aacctcgaac tttgaggaga ccaaactgtt 51 gattgcttta ttccgtggaa atcctcaact caatcacagc cgttggatca 101 aaacctcctt cccggtttga ctaaaaaatc accaaaaatc tgacccggtc 151 acctcctctt ttccccatat atcacgcatc cttcttcttc tctcttctcc 201 ATCACAACCA TTTCTCTCTC TCGTCTTCGT CTTCTTCTTC TTCAACGTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.004 +strand -67 : -60 AAAAATCT AC RSP00735 Mean Expected Number 0.003 +strand -77 : -70 AAAAATCA AC RSP00864 Mean Expected Number 0.009 -strand +21 : +13 AGAGAGAGA AC RSP01104 Mean Expected Number 0.009 +strand -100 : -93 AAACCTCC AC RSP01497 Mean Expected Number 0.003 +strand -112 : -103 GCCGTtGGAT AC RSP01748 Mean Expected Number 0.000 +strand -87 : -75 GGTTTGACTAAAA Totally 6 motifs of 6 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1555. Group TF: WRKY11 /AC: RSP01748//OS: Arabidopsis thaliana /GENE: AtWRKY11 (At4g31550)/RE: WRKY11 BS1 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G31560 |PROD: the same as GENE |15295207..15296233 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.36 C - 0.17 1 ttgaaaatgt ttgattggtt aattaaccaa gtgaagttgt aatactatta 51 tgcaagaatt aattgcagca ctctatgggt ttcgtaattt ggttaatagt 101 ttaatgggcc tcgtacaagt cagcccATTG Gatatatttc agattaatcg 151 ggtcgggtca caaatgatta tccttgttgc cttgcctttg ccaatcgttt 201 GTTTCCAAAA TAAAAATCAT GGCGAGACTT TTCGTCTCTA TCCCTATGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.002 +strand -93 : -84 GCCtCGTACA AC RSP00735 Mean Expected Number 0.007 +strand +12 : +19 AAAAATCA Totally 2 motifs of 2 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: TAFII15 |LOCUS: AT4G31720 |PROD: |complement(15353958..15356352) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +642 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.27 C - 0.16 1 gatacactaa actcaaatat tgattttatg ggaagagaat aaaaaatgga 51 ttgtgaaaaa ggaaaaaaaa aaacctaaat ttgggccata tgtgaagaat 101 acttccttaa gtttgggcca tagtttaaaT CAATaggccc attagtctat 151 ctaacgattc tttctcaact cttaaaaatc tgaccggcgg agatggctct 201 GAGTTGGACC AGTCGGAGGA TTAGGGTTTC AACGGAGACT CACTAGTCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +21 : +29 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +29 : +21 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 -strand +30 : +21 gAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ASP5 |LOCUS: AT4G31990 |PROD: similar to aspartate aminotransferase |complement(15470767..15473862) |SUPPORT | 13 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +332 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.39 C - 0.16 1 tttttttgaa ttttacagtt tgatctctga ttgctttgag taatttaatt 51 tgggggtgaa aaatgtgagg acagaagggt attcacttgt cattattgta 101 tttgtaaATT GAttaatata taaattgtgt tgtcactaag tgtaaatatt 151 caattaattg ttgcatgaac cactaatcac aatccactag tatccatcca 201 TCCACTCTTT CAACTTTTAA ACATAATCCT AAATGACTAT CTTACCCCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00160 Mean Expected Number 0.001 +strand -193 : -182 GaATTTTACAGT AC RSP01058 Mean Expected Number 0.004 -strand -12 : -19 TAGTGGAT AC RSP01081 Mean Expected Number 0.000 +strand -8 : +4 TCCAtCCATCCA AC RSP01463 Mean Expected Number 0.005 -strand -76 : -88 ATTTATATATTaA Totally 4 motifs of 4 different REs have been found Description of REs found 155. Group TF: DF1 /AC: RSP00160//OS: Pisum sativum /GENE: pra2/RE: DE1 /TF: DF1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 999. Group TF: DcMYB1 /AC: RSP01081//OS: Daucus carota /GENE: DcPAL1/RE: box-L3 /TF: DcMYB1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATP synthase family |LOCUS: AT4G32260 |PROD: the same as GENE |complement(15573643..15574743) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.23 T - 0.38 C - 0.17 1 ggatgttgtg tgtgtgcaaa atgaataagg cattgtgtat ttacgtttgt 51 agtggatata attgcaacct taccgtctta gccattttaa ccttatctgg 101 tacagcgttc gcgtttgcgt ttgcgtttgc gtttgtgttt gcgtttgtgg 151 ccaaaacgca atcatttact ttttaattga ttttccgctc cattgatttt 201 AATCTGACGA CCACAGCCTT TAGCTTATTT GTGTGGCGAA GAGAAGAGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.001 +strand -49 : -42 CAAAACGC AC RSP00741 Mean Expected Number 0.004 -strand -105 : -116 AtAAGGTTAAAA AC RSP01058 Mean Expected Number 0.008 +strand -151 : -144 TAGTGGAT Totally 3 motifs of 3 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: mitochondrial substrate carrier family protein |LOCUS: AT4G32400 |PROD: the same as GENE |15638631..15640471 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.25 C - 0.21 1 actacatttg cttgtcggca attatttcgt ggatttgcat ttcccaattc 51 tagaaaataa ttgaatatct taacaataaa atataaaact ctttttaatt 101 ttagtttcaa agaaaataaa aaaaaatcaa agcgccgcag tcgacgtccc 151 actgacctac ctaccaaccc acccaaaaag ggcaagaaaa ctagcagact 201 GGTTAAAAGT AAAACCCTAA AATCTCAACG AAAGGGACGA CCAATTGTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.006 +strand -45 : -36 CCtACCTACC AC RSP00114 Mean Expected Number 0.003 +strand -190 : -181 CTTGTCGgCA AC RSP00279 Mean Expected Number 0.006 -strand +20 : +12 TTAGGGTTT AC RSP00359 Mean Expected Number 0.008 -strand -182 : -187 GCCGAC AC RSP00369 Mean Expected Number 0.006 +strand +12 : +20 AAACCCTAA AC RSP00489 Mean Expected Number 0.001 +strand -43 : -34 TACCTACCAA AC RSP00651 Mean Expected Number 0.004 +strand -46 : -36 ACCTACCtACC AC RSP00651 Mean Expected Number 0.004 +strand -42 : -32 ACCTACCAACC AC RSP00739 Mean Expected Number 0.001 +strand -43 : -32 TAcCTACCAACC AC RSP00826 Mean Expected Number 0.001 +strand -45 : -35 cCTACCTACCA AC RSP01214 Mean Expected Number 0.005 -strand -20 : -29 CCTTTTTGGG AC RSP01303 Mean Expected Number 0.010 +strand +11 : +20 aAAACCCTAA AC RSP01600 Mean Expected Number 0.007 +strand -96 : -89 TTTCAAAG AC RSP01678 Mean Expected Number 0.009 +strand -127 : -116 CAATAAAATATa Totally 14 motifs of 13 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 701. Group RE: Box 1 homolog (2) /AC: RSP00739//OS: Pisum sativum /GENE: PSPAL2/RE: Box 1 homolog (2) /TF: unknown 772. Group TF: R2R3-type MYB /AC: RSP00826//OS: Arabidopsis thaliana /GENE: F3H/RE: MRE-core (AtF3H) /TF: R2R3-type MYB 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G32570 |PROD: the same as GENE |complement(15716039..15718864) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.12 T - 0.33 C - 0.14 1 acattatgaa tctatgataa ccttaattta aaaagagtct ataatgccat 51 gattttacaa tcgtactttt ttcttttggg ctgaactttt aatcatatat 101 tatttgaaag atgtgattat tataatatta aagggaatta aaatcatgta 151 agagaaaccc aataaagtag cttgaagaag aaaaagacaa gctttattat 201 ACACTTACCC AGAAAAACAA AAAACAAAAA ACTGATAATA TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.000 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand +49 : +41 AGAGAGAGA Totally 2 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G32680 |PROD: the same as GENE |complement(15763242..15765119) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.31 C - 0.21 1 tgaccaaaac taaagacact tgtcttgatg attctctttg acttttggtc 51 ctatccaatc aatttaggat tttgaagtaa ttgggcacac ttgaattggc 101 ccgttaagaa gcccattatt ctaaacgcga caaactcttt agtgacgacg 151 atttgcgttt gaagaaataa gtgatttaaa atccgcgttt aaaaaggact 201 AAGCTGAGCT GACCCCGTCG AGAATTGGTT TCCTCTTTTC CTCGCTCCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.005 +strand -186 : -177 GaCACTTGTC AC RSP00253 Mean Expected Number 0.002 +strand -21 : -14 AATCCGCG AC RSP00894 Mean Expected Number 0.008 -strand -104 : -111 AATTCAAG Totally 3 motifs of 3 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: protein kinase, putative |LOCUS: AT4G32830 |PROD: the same as GENE |15842457..15844540 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.37 C - 0.20 1 agctacggtt aatgtaaatt ttgtagttaa attaaggcta aacaatctca 51 aatataaatt ggtcaggtcc acagacaaca gcctggcaag tggcaagcac 101 taaaaattcg accgttattt tttgcccctt tttttaatat ttcgaaATTG 151 Tatcttttag ttttatttta aagcttttta gcccgctcct cctccgctcc 201 ACCTTTAATT TTTTCACCAA TTGGATTTGG ATCTGTCAAA AATATTGGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.002 -strand -107 : -116 GCCACTTGcC AC RSP00522 Mean Expected Number 0.005 -strand -108 : -114 CCACTTG AC RSP00628 Mean Expected Number 0.009 +strand -160 : -153 AACAATCT AC RSP00749 Mean Expected Number 0.005 +strand -183 : -172 ATTTTGTAgTTA AC RSP01577 Mean Expected Number 0.000 +strand -164 : -155 GCTAAACAAT Totally 5 motifs of 5 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G32900 |PROD: the same as GENE |complement(15878737..15881044) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.35 C - 0.22 1 ccgtgtgttc gagagatatt ctatagtaat tacattagta gctatatact 51 gttaaaactt ttctaattgg accatgtatt tttccagaat gtacattaag 101 ccccaaacaa cgcgtcgttt tgtaatcaga gatatgaaca ccctgacgtt 151 tacggttact aaggctgctc ttatctccct tcttcatcat actcatgggc 201 ATTCGATTTT AAAGGCTTAG CTTTGTTCCT CTGTCGCCTT GGAGAATCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00176 Mean Expected Number 0.001 -strand -28 : -38 TAAGAGCaGCC AC RSP00203 Mean Expected Number 0.005 -strand -49 : -58 TAaACGTCAG Totally 2 motifs of 2 different REs have been found Description of REs found 170. Group RE: GCC-box /Group TF: EREBP /AC: RSP00176//OS: Nicotiana tabacum; arabidopsis (Arabidopsis thaliana) /GENE: CHN48/RE: GCC-box /TF: EREBP ||Identical REs AC: RSP01320 RSP01321 RSP01324 RSP01325 RSP01341 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G32915 |PROD: the same as GENE |15885523..15886954 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.24 T - 0.29 C - 0.16 1 gtttccatct ttcactagtt tgtaagctga ttgcaaaagt aaagcagaaa 51 agagaggtgt tctgactgaa aactgaaaaa caaaattcga ttattgtaag 101 tggaccggtt aaaaccggtt tagttagtcc ttggagaaaa cgacacaggc 151 tgtgtcgttt tagaaatgtt tgttatgaag ctggtcaatt ctatctattc 201 ATTCACAGGA GTCGAGAGAG AAATTAGCCA TGGCGACCAG AGCTTTGCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 +strand -19 : -10 TGGTCAATTC AC RSP00468 Mean Expected Number 0.001 +strand -20 : -10 cTGGTCAATTC AC RSP00961 Mean Expected Number 0.006 +strand -169 : -162 TGCAAAAG AC RSP01482 Mean Expected Number 0.001 -strand -10 : -20 GAATTGACCAg Totally 4 motifs of 4 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: glutaredoxin family protein |LOCUS: AT4G33040 |PROD: the same as GENE |complement(15940564..15941333) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.08 T - 0.39 C - 0.23 1 actcatcaga ataaataaat tttctaaact acaaaaaaaa aaaacgaaag 51 caaaagaaac acatcacgag acagtacttt gtgatgtaag caagcacata 101 caccactccc ttcttctcct ccccATTGTt tgtccttttc tttttctttc 151 cccaataatt ctcttcttat tttattggcc cttgtattta tttcctctat 201 GATTCCTTCT TTTGTTTTAA ACTTCTTTTT GATTCTTTCT ATATATACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand +36 : +51 TTTCTATATATAcAAA AC RSP00085 Mean Expected Number 0.006 -strand +51 : +36 TTTgTATATATAGAAA AC RSP00100 Mean Expected Number 0.010 -strand -128 : -133 TGTCTC AC RSP00574 Mean Expected Number 0.004 +strand -194 : -187 CAGAATAA AC RSP00879 Mean Expected Number 0.002 +strand -156 : -150 CGAAAGC AC RSP01546 Mean Expected Number 0.010 +strand -135 : -130 ACGAGA Totally 6 motifs of 5 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 98. Group RE: AuxRE /Group TF: ARF /AC: RSP00100//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AuxRE /TF: ARF ||Identical REs AC: RSP00261 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1388. Group RE: DRE1 /AC: RSP01546//OS: Sorghum bicolor; Sorghum vulgare /GENE: Sbdhn2/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: coclaurine N-methyltransferase, putative |LOCUS: AT4G33110 |PROD: the same as GENE |complement(15972326..15974616) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.32 C - 0.13 1 taagaaaatt ataattaata gcgatatacg tttttcgaat cgtataaact 51 aaaattaggt cacatggaag tcaaacaaaa gaataaggta atacaggtaa 101 ataggtaatt aACAATcctt agtgggctga acgttgaatt aagaaataaa 151 gccacgagtt tgatttgttt cttatttact ttacgtccgt gtctatttat 201 ATGTTTAACG TTACACTCAT TAAGATCGTA CCTTAGGGAA AAAAAACTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01017 Mean Expected Number 0.005 -strand -29 : -36 AGAAACAA AC RSP01054 Mean Expected Number 0.003 +strand +7 : +17 AACGTTACAcT AC RSP01463 Mean Expected Number 0.006 +strand -6 : +7 ATTTATATgTTTA AC RSP01715 Mean Expected Number 0.001 -strand -166 : -177 AAAaACGTATAT Totally 4 motifs of 4 different REs have been found Description of REs found 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1523. Group TF: STF1/HY5 /AC: RSP01715//OS: Arabidopsis thaliana /GENE: ARF6 (At1g30330)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT4G33180 |PROD: the same as GENE |16000244..16002272 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.19 1 ctagtttttt tacatggact ttagaaatca ttcttgtaca gattcaagga 51 aaaacaatta tcgtgtatat taaagaatgg aaacaaatat aaaaatcaca 101 ccattccttc aacgttacat ccctacacAT TGAatacgat tatcttccat 151 attatgatct ttttaaaaaa aaagattttg tccatttctc accctttctc 201 ATACTCTCTT TTTTTCTCGG ACAAGAAGGC TACAGAAAGA TATGTCGCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00104 Mean Expected Number 0.009 -strand -184 : -190 CCATGTA AC RSP00445 Mean Expected Number 0.002 -strand +14 : +5 AAAAAAGAGA AC RSP00748 Mean Expected Number 0.001 +strand -126 : -115 GAATGGaAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 102. Group RE: RY1 /AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 710. Group TF: GT-1 /AC: RSP00748//OS: Arabidopsis thaliana /GENE: Pc/RE: PCbox1 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33640 |PROD: the same as GENE |complement(16159551..16160306) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.30 C - 0.16 1 aaatagagaa aaatcgaatg ttaaaatcgt ggtaaaccgg ctgatgtcgt 51 atcatttatt aaggtctcaa accggaggtg tgtgttaatt ttcaatgttg 101 aagaaaaatc ggtacgataa ggttttcaaa ccggttaagt gtgcgcattt 151 tggtcttttc aaccggatta ggagggacaa gaatgagtcc atcgagctgt 201 CTTCGTCAGA AACAGAAAGA GTCTCTTCTT CAATCCAATC TTTTTACAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00434 Mean Expected Number 0.000 -strand +38 : +26 tTGGATTGAAGAA AC RSP01641 Mean Expected Number 0.007 -strand -19 : -28 TCTTGTCcCT Totally 2 motifs of 2 different REs have been found Description of REs found 414. Group TF: TFIIIA /AC: RSP00434//OS: Arabidopsis thaliana /GENE: eEF-1beta/RE: TFIIIA-box /TF: TFIIIA 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33780 |PROD: the same as GENE |complement(16201833..16203643) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.35 C - 0.14 1 ccaaaaaaaa ttagcaaatc attttattat tggaaactca actttatttt 51 tcatctaaaa tcaaaactca attttagtat aaatatatag ttattcaatc 101 aACAATgata aatactaatt aataaaattt tgacgtcatt ctaatagatt 151 tattatattt tggtattatg cattaatatc gaccagagga aaaaaaaagt 201 GAGCGTGTTG ATGCATAACG AACGATGCCA TTTTCCGCAT CAATCTCATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00071 Mean Expected Number 0.009 +strand -69 : -64 GACGTC AC RSP00071 Mean Expected Number 0.009 -strand -64 : -69 GACGTC AC RSP01654 Mean Expected Number 0.004 -strand -61 : -70 AATGACGTCA Totally 3 motifs of 2 different REs have been found Description of REs found 70. Group RE: C-box /Group TF: RITA-1 /AC: RSP00071//OS: Oryza sativa /GENE: rifa-7-P-glucuronidase transgene/RE: C-box /TF: RITA-1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 40S ribosomal protein S29 (RPS29C) |LOCUS: AT4G33865 |PROD: the same as GENE |complement(16233214..16234201) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.33 C - 0.15 1 gtaggcatgc ttaaacgtat gagttagtgt taaattaggt agaaaaatga 51 caagcttggt atataacgtt caataatata aggaagatgt ggcagagtta 101 gtgttgagaa tgggctagtc tacttgtgtt taggcccata tatataaggc 151 ccatatatat ttgaagacca caaataacta gggtttacaa atttggttat 201 ATAGCTCTCT CTCTCGAGCC GCACATATTT CGTCTTCTTG ATCTAATCGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.003 +strand -9 : +3 TtTGGTTATATA AC RSP00613 Mean Expected Number 0.009 -strand +42 : +35 ATCAAGAA AC RSP00864 Mean Expected Number 0.000 -strand +14 : +6 AGAGAGAGA AC RSP01598 Mean Expected Number 0.007 -strand -149 : -156 TGTCATTT Totally 4 motifs of 4 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: oxidoreductase |LOCUS: AT4G33910 |PROD: the same as GENE |complement(16256738..16258776) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.25 C - 0.20 1 aaaagaagcc cacctaattc aaatcacaaa aacgttcaag ttccatcgaa 51 ccaaaactta aaccactcta cgcaaccaaa cttcaaccaa aaaaaaggat 101 aaattcggcg catttttttg tatttgttga ccagtgaaga aaatgacaaa 151 ctggtcaacg agatctgatc attaaactat aaaacaatat attttaaagt 201 AAATAGAAAT TTGTGGTGCT TCATTGGATC GACGAAAGGC GTCCCGATAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00891 Mean Expected Number 0.004 -strand -6 : -14 AAAATATAT AC RSP01476 Mean Expected Number 0.010 +strand -8 : -1 TTTAAAGT AC RSP01597 Mean Expected Number 0.002 -strand -188 : -198 GTGGGCtTCTT Totally 3 motifs of 3 different REs have been found Description of REs found 823. Group TF: Dof family /AC: RSP00891//OS: Solanum melongena /GENE: SmCP/RE: EE 1 /TF: Dof family 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33925 |PROD: the same as GENE |16263242..16264229 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.15 T - 0.23 C - 0.18 1 aacattatcg atcacaaacc aaaataagcc aacaaaattc cagatgttgc 51 ctaaattttg gaaaatatgc atgacagaca ttcgaaactt cagatccaaa 101 tcaaaccgaa attgaaattt gtcaaatatc taaaccgaAT TGAacacgag 151 cggtttttga gaatatgaaa ttgggcagag caattcaaac tcaaaaattc 201 AACAATTCCA GAAGAACTTT CTCAGAAAAG TTTCGACGGA AGAAAAAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.002 +strand -182 : -173 CCAAAATAAG AC RSP01114 Mean Expected Number 0.007 -strand -140 : -146 CCAAAAT Totally 2 motifs of 2 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G33940 |PROD: the same as GENE |16266035..16267786 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.29 C - 0.22 1 taaacatctg tccaccttta atccaagtac ctctcccaac tactgcgact 51 aaatgaccca tttgcctaaa tgtagtcctt taccttactg aaaatagcga 101 ggacaaatca gtcattcacc gccctaaaac acgctttgac atgtatttat 151 ccatttactg ttattttatc tgtaagaaat ccaaataaac tcatttctgt 201 AAATTAGGAA ACTTCTGAGA AAGTGACGAA AGCGAAGAAG GTTTCGGAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.010 +strand +27 : +33 CGAAAGC AC RSP01094 Mean Expected Number 0.003 -strand -44 : -55 TAAaTGGATAAA AC RSP01761 Mean Expected Number 0.000 -strand +46 : +35 CgAAACCTTCTT Totally 3 motifs of 3 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1566. Group TF: NSP1 /AC: RSP01761//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: MRE (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G33980 |PROD: the same as GENE |complement(16282801..16285063) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.14 T - 0.37 C - 0.24 1 aagaaaagat catttttatt tttatttaac acaacctccc ttctccttga 51 gctccaaaaa aaaatatctg gctgatattt gtcggagata ttattagcga 101 cccagatgac gtgGCAATac tatgacacgt gtaaaagcga cgccatgtgg 151 accttttgtc tctctctttt tttccttttc atctccttct tctctcattc 201 CTCTCTCTCT TAAAGCTCTC TTCTTTGGCT CTTTCGAAGA AGAACCATTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.002 +strand -71 : -64 TGTAAAAG AC RSP00113 Mean Expected Number 0.000 +strand -94 : -86 TGACGTGGC AC RSP00163 Mean Expected Number 0.009 +strand -49 : -39 CCTTTTGTCTC AC RSP00208 Mean Expected Number 0.000 -strand -86 : -97 GCCACGTCAtCT AC RSP00214 Mean Expected Number 0.001 +strand -94 : -87 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -87 : -94 CCACGTCA AC RSP00248 Mean Expected Number 0.002 -strand -86 : -95 GCCACGTCAt AC RSP00340 Mean Expected Number 0.001 -strand -68 : -77 TaCACGTGTC AC RSP00445 Mean Expected Number 0.006 -strand -29 : -38 AAAAAAGAGA AC RSP00524 Mean Expected Number 0.006 +strand -76 : -70 ACACGTG AC RSP00524 Mean Expected Number 0.009 -strand -69 : -75 ACACGTG AC RSP00683 Mean Expected Number 0.001 +strand -59 : -50 GCCAtGTGGA AC RSP00819 Mean Expected Number 0.001 -strand -86 : -95 GCCACGTCaT AC RSP00821 Mean Expected Number 0.000 -strand -86 : -95 GCCACGTCaT AC RSP00847 Mean Expected Number 0.001 -strand -87 : -96 CCACgTCATC AC RSP00863 Mean Expected Number 0.006 -strand +6 : -3 AGAGAGGAA AC RSP00864 Mean Expected Number 0.006 -strand +10 : +2 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -34 : -42 AGAGAGAGA AC RSP00870 Mean Expected Number 0.004 +strand -71 : -62 TGTAAAAGcG AC RSP00913 Mean Expected Number 0.001 +strand -96 : -87 GATGACGTGG AC RSP00915 Mean Expected Number 0.001 +strand -96 : -87 GATGACGTGG AC RSP00916 Mean Expected Number 0.001 +strand -96 : -87 GATGACGTGG AC RSP00997 Mean Expected Number 0.001 +strand -96 : -87 GATGACGTGG AC RSP01034 Mean Expected Number 0.003 +strand -92 : -86 ACGTGGC AC RSP01035 Mean Expected Number 0.006 -strand -71 : -77 ACGTGTC AC RSP01256 Mean Expected Number 0.002 +strand -76 : -69 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -69 : -76 ACACGTGT AC RSP01275 Mean Expected Number 0.001 -strand -86 : -95 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 +strand -96 : -86 GaTGACGTGGC AC RSP01658 Mean Expected Number 0.000 +strand -96 : -85 GATGACGTGgCA Totally 30 motifs of 27 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G34265 |PROD: the same as GENE |16402284..16403827 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.34 C - 0.22 1 cgtcatcgtt caagaaatta gggttcccaa atactaaagt gtaaatgaca 51 aaccaaatct ctataccaga aaccaaacca attaatttta ttaaatcgat 101 cgattatagc gaaaACAATa aaccgaacca aaccaaaccg agtctctctc 151 gctctctctc gtttagggct tatttactga gtttctgtag tctcttcttt 201 GGTTCCGTCT TCGAGATTGA TCTGATTTGC TTTGTTGTTT TCTTTCTGCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.009 +strand -39 : -33 TTTAGGG AC RSP00447 Mean Expected Number 0.009 -strand +36 : +27 AaCAAAGCAA AC RSP00860 Mean Expected Number 0.006 -strand +47 : +39 AGAAAGAAA AC RSP01304 Mean Expected Number 0.002 -strand -174 : -183 gGAACCCTAA AC RSP01598 Mean Expected Number 0.006 -strand -151 : -158 TGTCATTT AC RSP01621 Mean Expected Number 0.005 -strand -158 : -167 TACACTTTaG Totally 6 motifs of 6 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SWIB complex BAF60b domain-containing protein |LOCUS: AT4G34290 |PROD: the same as GENE |16410836..16412389 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.16 T - 0.26 C - 0.16 1 catgggaggc tgatgataaa accaaaagag aggcttcaca aaaaaaaaca 51 agtgactcat gtattgttgt atttattgta ctaatagaat acgatgaata 101 ttaaaaaatg aaaatgttat ttttcggtga taaataaaaa aatagtttag 151 gtcgaacgac gaattttgac tatataagca aaacttccga ggaaaaggat 201 AACACAAAAC CTCTCGTCTT CTCAAATCCA CTCTCATACA CAGTCACAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01604 Mean Expected Number 0.005 -strand +44 : +37 ACTGTGTA Totally 1 motifs of 1 different REs have been found Description of REs found 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G34340 |PROD: the same as GENE |complement(16426643..16428014) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +178 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.37 C - 0.17 1 agaaaaactt attttcaaca aaatcagcca cgccaatttc ttataaaatt 51 ttccaataat tttttgggtt atgattacta caatttacat ttgtttaatt 101 ttaaaccaaa attttggtct aaaaaaaaaa aaaaaagttg gtagttaatt 151 ttggggttgg agctctatat aagcgagaga tggcaggatt ctcaagacgc 201 ATTTCTCTCT GTCTCTCTTT CTCTCTTCAT ATTTCCCGGT GCTTCGTCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.007 -strand -54 : -63 TAaCTACCAA AC RSP00750 Mean Expected Number 0.006 -strand -142 : -153 TTATTGgAAAAT AC RSP00861 Mean Expected Number 0.003 -strand +22 : +14 AGAAAGAGA AC RSP01527 Mean Expected Number 0.001 +strand -186 : -175 TCAACAAAaTCA AC RSP01640 Mean Expected Number 0.007 +strand +7 : +16 CTcTGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SSR16 |LOCUS: AT4G34620 |PROD: ribosomal protein S16 family protein |complement(16534867..16536176) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.26 C - 0.17 1 tgattgaata ttttggaatt tctggataat ccgagatttt agataagtga 51 cttctgtata gcaaatcacg aaaagaaacg tatagcagat ctaatgggct 101 taatgtgaat aaagagataa aatgtaaact ggcccaacat ggcccatctt 151 atcaataacg atcgtaacag aagaaagaga acacagataa ggggaaaaag 201 CCAAAACCCA CCAGCTTAAA TAAAAACCTT TACTTATCTT CTTTCTTCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.005 +strand -29 : -21 AGAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SH3 domain-containing protein 2 (SH3P2) |LOCUS: AT4G34660 |PROD: the same as GENE |complement(16545253..16548455) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.39 C - 0.16 1 gagagaaagc cctaattcac tggcttttca tttatatatg tctagggttt 51 tgcgtctttt tagttatttt gagatgatat aaatttatag cttactggat 101 tttattttca agcCCAATgg gctattatag agagcccaat attaaccttc 151 ttggtgaaac agagactttg tctatctttg atttcttcgt gttcgaaagc 201 AGAGAAATTT GTTCTGAGCT CAACGCCATT TTTGACGATT TCGAATCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.004 +strand -7 : -1 CGAAAGC Totally 1 motifs of 1 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G34720 |PROD: the same as GENE |complement(16567829..16569300) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.29 C - 0.21 1 gttgtgtact tgtgtcattg ggcccgtatc tcatgtatgc agtaacattt 51 taggcccaaa caaaaatcag aacctaatcc attgtttatg ttacttatac 101 tacatcggta tcttagaaAT TGGgctttta atctaaaata ggcccaagcc 151 aaaatgacgt ggtcgtcctt gttacagaac aagcagcgtt gttcccttcc 201 ACTCATCTGA AAACAAAAAC AACAAACAAA ATAAATAAAT TCAACAGCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00214 Mean Expected Number 0.001 +strand -46 : -39 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -39 : -46 CCACGTCA AC RSP01275 Mean Expected Number 0.003 -strand -38 : -47 aCCACGTCAT Totally 3 motifs of 3 different REs have been found Description of REs found 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ROC5 |LOCUS: AT4G34870 |PROD: |16614332..16615318 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.27 C - 0.27 1 ttaggctttt ggagtcggcc cacctaaact ccaacgccgt aattctgtcg 51 gtccatctaa aaagaatcaa atcaattatg gaaaggagcc taggatccac 101 gcgacttcaa ccctagtcag atccgattca accacggtta atttccatat 151 catcacagct ctacacgtgt cataaatcaa cggtcaccaa cataatttcc 201 ATTTTCAGAT TCACCGTTTT AGAAATTAAA TCCTCTCTAT AAGAACCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.006 +strand -39 : -30 TaCACGTGTC AC RSP00405 Mean Expected Number 0.001 +strand -193 : -186 TTTGGAGT AC RSP00524 Mean Expected Number 0.010 +strand -38 : -32 ACACGTG AC RSP00524 Mean Expected Number 0.009 -strand -31 : -37 ACACGTG AC RSP00913 Mean Expected Number 0.006 -strand -47 : -56 GATGATATGG AC RSP00914 Mean Expected Number 0.001 -strand -47 : -56 GATGATATGG AC RSP01035 Mean Expected Number 0.009 +strand -36 : -30 ACGTGTC AC RSP01091 Mean Expected Number 0.006 +strand -140 : -130 AaAGAATCAAA AC RSP01256 Mean Expected Number 0.003 +strand -38 : -31 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -31 : -38 ACACGTGT Totally 10 motifs of 8 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: 1-phosphatidylinositol phosphodiesterase-related |LOCUS: AT4G34920 |PROD: the same as GENE |16635689..16636980 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.32 C - 0.22 1 ttatcatgac ctaattagtt ctcttaaata gttgttggca acttttaatt 51 agatagccaa tcaatttgaa taaagaggtc aaactccaac caatcccaca 101 acaaataATT GTctttgatt taacgtttta cacttaaaag acaaacactg 151 cacgatatct ctctcagatt tataagtgaa ccctacaaag tacaagtcgt 201 AAACTCAACC ACAAGAGAAA CCTTATCTTC TTCTTCTTCT TCATCATCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.010 +strand -113 : -104 AACCAATCCC AC RSP00383 Mean Expected Number 0.008 +strand -124 : -118 GGTCAAA AC RSP00850 Mean Expected Number 0.006 -strand -162 : -167 GCCAAC AC RSP01082 Mean Expected Number 0.002 +strand -120 : -109 AAaCTCCAACCA AC RSP01639 Mean Expected Number 0.007 +strand -94 : -85 AATTGTCTTT Totally 5 motifs of 5 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 1000. Group TF: DcMYB1 /AC: RSP01082//OS: Daucus carota /GENE: DcPAL1/RE: box-L4 /TF: DcMYB1 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: APX3 |LOCUS: AT4G35000 |PROD: L-ascorbate peroxidase 3 (APX3) |complement(16664827..16667710) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.29 C - 0.19 1 aaaaaataat ggtttatgtc catttttatt caatgtttcc attttacaaa 51 atttaaggaa tgaacatgca cgctgtttaa caaataacta gcaaactcgt 101 gtgccgtttt ttgtgtaaca aaatgacatg caagtcacgt gccaACAATc 151 gtatctaaaa agccaatgag gtccaccgaa agatgtggct gaggaaaaca 201 GGAGATAACT GACACCGCCC ATTCAAATCC CGTTTCTCAT TGGGTGGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00785 Mean Expected Number 0.000 +strand -67 : -58 GTCACGTGCC AC RSP00966 Mean Expected Number 0.001 -strand -58 : -67 GGCACGTGAc AC RSP01006 Mean Expected Number 0.004 -strand +48 : +42 ACCACCC Totally 3 motifs of 3 different REs have been found Description of REs found 740. Group TF: G-box binding TF /AC: RSP00785//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 9 /TF: G-box binding TF ||Identical REs AC: RSP00964 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: bZIP transcription factor family protein |LOCUS: AT4G35040 |PROD: the same as GENE |16680419..16682098 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +407 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.29 C - 0.18 1 atacaaagtt ttgactctac caaattataa aaatcataaa agacgaggag 51 ctccaatcac gttcaagtaa tagtatagat atatggaaag gaaataatta 101 aaagacccta attaaaattt agttcaagac ctactttaaa gccttttaca 151 aaaaaagaaa agaattctct aagtcgaaat cgttatcgta gtacgttcat 201 GTCTTTTCTC CGGCCACCGA AACGATGCCA TCTGTTTAGT GCGCCTTTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 -strand -51 : -58 TGTAAAAG AC RSP01134 Mean Expected Number 0.003 +strand -79 : -70 GTTCaAGACC AC RSP01632 Mean Expected Number 0.002 +strand -67 : -57 CTTTAAAGCCT Totally 3 motifs of 3 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1452. Group RE: TERE /AC: RSP01632//OS: Arabidopsis thaliana /GENE: At5g51890/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G35060 |PROD: the same as GENE |complement(16685725..16686708) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +284 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.34 C - 0.17 1 tctgtaattg tttagtcaga tttgaaataa ttgcgaatag agatatctta 51 aaaacttcat tcaatagcaa acatgaattg tataacaaat gtctatttca 101 tctatctgTC AATgtttaat tattgccaca ctggtgatgc atatataaca 151 aaagcgacct atatagatta aagtcctttt ataacaggtt catatacacc 201 CAGTAACCAC CAATACACAT ACACGTACAT ATATATATTA TTGCCGTTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.007 -strand +28 : +22 GTACGTG AC RSP01221 Mean Expected Number 0.004 +strand +4 : +11 TAACCACC Totally 2 motifs of 2 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: amino acid transporter family protein |LOCUS: AT4G35180 |PROD: the same as GENE |complement(16738344..16740371) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.33 C - 0.15 1 ccttcctttt ttttgttttg gaaaaagaga ttcaaagtca atatacacag 51 ccaccgaaca aattactcta tataaatcca atgaaagcag agtaaacatt 101 tatatagcca tacaatttgt ggctcgacgt aaataacgcg ATTGGagtcg 151 ttagaggaaa ataaagttta ttttgtatac aatgtctata gcattgggaa 201 ACTTATTTGA TTTGGAATCA CAAGAAAGTG GTGGTTCTCC TTTATTTATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00979 Mean Expected Number 0.006 +strand -93 : -84 CCATACAAtT Totally 1 motifs of 1 different REs have been found Description of REs found 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G35190 |PROD: the same as GENE |16746604..16748266 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.39 C - 0.16 1 ttcttcttgt agtttctttt gaattttaat tgatcctaaa gtgttctttt 51 ctttttattt aaccataaaa gcaaccactc tttcaactat taaaaggaaa 101 aggaaaaaag cttacttgat aacaATTGGa tatatggaac agtagtgtct 151 ttattgcttt gttttgtcta tataatttgt tgtctcattg tctaagctgc 201 ATCACAAAGT GAAACAAGAA TGAGTTAGCT TGAACCACAC GTTCATCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.002 -strand -129 : -138 GCTTTTATGG AC RSP00254 Mean Expected Number 0.006 -strand -98 : -104 CCTTTTC AC RSP01601 Mean Expected Number 0.005 -strand +14 : +7 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: cyclase family protein |LOCUS: AT4G35220 |PROD: the same as GENE |16752618..16754310 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.33 C - 0.23 1 tagtatcgta tgcttcaatg agacaatggg tttgctactt tgcttgcatg 51 tgtcaactag tggacttgtt actttcgcac caagaaacga tttgctctgt 101 tttaATTGTc atgacgattt gggcctataa ttaattcagg cccataaatt 151 aaacaacccc aaaatggtca aaatcaattc atcttcttcg tgatgatcgt 201 AATCACCAAC CAGTGACCTA ACAATGGCCG TTCCTCCATT ATTCTTCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00295 Mean Expected Number 0.000 +strand -81 : -57 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -57 : -81 TGGGCC-- ** bp --GGCCCA AC RSP01082 Mean Expected Number 0.001 +strand +1 : +12 AATCaCCAACCA AC RSP01214 Mean Expected Number 0.002 -strand -34 : -43 CCATTTTGGG AC RSP01743 Mean Expected Number 0.000 -strand -27 : -39 aTTTTGACCATTT Totally 5 motifs of 4 different REs have been found Description of REs found 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 1000. Group TF: DcMYB1 /AC: RSP01082//OS: Daucus carota /GENE: DcPAL1/RE: box-L4 /TF: DcMYB1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: vestitone reductase-related |LOCUS: AT4G35250 |PROD: the same as GENE |complement(16771180..16773369) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.29 C - 0.22 1 ctgaaaatag tttattagta taatatatct tctcaacaaa cattgcaaat 51 attttgaaaa tccagctaaa actatacccg atcagaatta gaaaatttga 101 gcccaagccc ggcccgtaag tattattata gaaaccgata taaagtttcc 151 tttttcttaa taatatttat tccgtggcag caaatgcaag ccaatccaat 201 GTCAAAACAC CAGCTGACGT GGCCAAACGC ACATCAACTG TCGTCTCTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand +15 : +23 TGACGTGGC AC RSP00208 Mean Expected Number 0.000 -strand +23 : +12 GCCACGTCAGCT AC RSP00214 Mean Expected Number 0.001 +strand +15 : +22 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand +22 : +15 CCACGTCA AC RSP00247 Mean Expected Number 0.002 -strand +23 : +14 GCCACGTcAG AC RSP00248 Mean Expected Number 0.001 -strand +23 : +14 GCCACGTCAG AC RSP00713 Mean Expected Number 0.008 +strand +11 : +17 CAGCTGA AC RSP00751 Mean Expected Number 0.003 +strand -69 : -58 AAACCGATAtAA AC RSP01034 Mean Expected Number 0.003 +strand +17 : +23 ACGTGGC AC RSP01280 Mean Expected Number 0.000 +strand +13 : +23 GcTGACGTGGC AC RSP01478 Mean Expected Number 0.000 +strand -106 : -92 ATTTGAGCCCAAgCC Totally 11 motifs of 11 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1346. Group RE: BC-2 /AC: RSP01478//OS: Spinacia oleracea /GENE: RPL21/RE: BC-2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G35410 |PROD: the same as GENE |16832506..16834014 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.33 C - 0.17 1 gctacgttta atgtgtaatg ccctggtcta ttcgataaga ttaagaagat 51 aattgcaata atggaacaaa attagctgag aatgcaatcc gtttgcatgg 101 atccgacccg gaatgcaatc cgtttttaat tatgtaaatg ACAATtatac 151 ccctggcact cgacatgttt gacagtttga gcaaagagaa tttttttctt 201 GTTGAGGATC ATCGATTATC AGTTTCTGGA TTTCGCTACT ACAGATTTGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00320 Mean Expected Number 0.002 +strand +7 : +17 GATCATCGATt AC RSP01598 Mean Expected Number 0.006 -strand -58 : -65 TGTCATTT AC RSP01639 Mean Expected Number 0.009 -strand -55 : -64 AATTGTCATT Totally 3 motifs of 3 different REs have been found Description of REs found 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: AKR2 |LOCUS: AT4G35450 |PROD: ankyrin repeat family protein / AFT protein (AFT) |16839559..16842082 |SUPPORT | 9 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +308 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.31 C - 0.19 1 gcttccgtga agtgacgcgt gtttatccat taacggataa tttgatctta 51 aatcacaaat cttacgtggc tgatcttatt attcaaacgc atgggcttgg 101 gccttgaggt aaacaggttt atatgggCCA ATaacaataa atttgattaa 151 aaataaaagg cctcttagct ttaggttcaa acttcaatgg agaagcagtg 201 GCTGTTGTCC CTCGCAGTTG ATCTTCTTCT CAATCCAAAA TCCAGCTGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 +strand -138 : -131 TACGTGGC AC RSP00143 Mean Expected Number 0.003 +strand -187 : -178 GACGCGTGTt AC RSP00247 Mean Expected Number 0.004 -strand -131 : -140 GCCACGTAAG AC RSP00248 Mean Expected Number 0.003 -strand -131 : -140 GCCACGTaAG AC RSP00523 Mean Expected Number 0.007 -strand -179 : -185 ACACGCG AC RSP00713 Mean Expected Number 0.010 +strand +43 : +49 CAGCTGA AC RSP01034 Mean Expected Number 0.007 +strand -137 : -131 ACGTGGC AC RSP01602 Mean Expected Number 0.005 +strand +28 : +35 TCTCAATC Totally 8 motifs of 8 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: leucine-rich repeat family protein |LOCUS: AT4G35470 |PROD: the same as GENE |16846306..16849151 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +230 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.16 T - 0.27 C - 0.09 1 cggtttttaa aatcaaaaaa tttcctctac tgataatgtt aattaagaaa 51 ttaaaattat gtcttcaact tttaataaaa caattaatga aaaactatca 101 ttattgtagt ttcattagtg acaaatgACA ATattaaaaa aaattaagaa 151 aagtaagcaa ttattagttg aagaactgaa gaagcagaag aagaagaagc 201 AGAAGAAGAA GAAGAGAAAA TTTTGACAGA GATAATACAC AGATAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00771 Mean Expected Number 0.000 +strand -81 : -68 GACAAATGACAATA AC RSP00953 Mean Expected Number 0.006 +strand -43 : -35 CAATTATTA Totally 2 motifs of 2 different REs have been found Description of REs found 728. Group RE: Box I /AC: RSP00771//OS: Brassica oleracea /GENE: SLR1/RE: Box I /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RHA3B |LOCUS: AT4G35480 |PROD: |complement(16852079..16852952) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.41 C - 0.16 1 gtttgtcttt atggatactg caatctcatt atttatcttc ggaaaagttg 51 taaaactaag tttttcttct attcatccaa aacctttttt tgccgatatg 101 acatggaatt aaatgaacac tacttattaa tatttaatta attttaatct 151 gcaatttgga catgtcttat ataagtatag atgtgtatgt gtgtgtctct 201 ATTATAACTT GGATCAGATT CTTCTTCTCC TCTAAACAAC AACAAAGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.006 +strand +41 : +50 AACAAAGTcT AC RSP01033 Mean Expected Number 0.008 +strand -118 : -109 CCTTTTTTTG Totally 2 motifs of 2 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: HMGB5 |LOCUS: AT4G35570 |PROD: |complement(16887171..16888348) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.32 C - 0.16 1 tgtagtttaa tgtaattagg gatgatgcaa tgttagcatg tttgtgtgtt 51 gtaacttaaa aacttattta ggaatctgat aaaagttact gttgaattta 101 cacggatggt caagattaaa tgtaccaaca tcttaattat ctacggtcaa 151 gattaaaaat accaacatct taaattaaca ccgcatcaaa gaattatctc 201 AATCGTCGTC TCTCCCCAAT TCAAAAAAAG AAATAACCTA AACGTGTTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.005 -strand -129 : -138 CCTAAATAAG AC RSP01602 Mean Expected Number 0.005 +strand -4 : +4 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: Rho-GTPase-activating protein-related |LOCUS: AT4G35750 |PROD: the same as GENE |complement(16940512..16941867) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.25 T - 0.22 C - 0.16 1 cgtaacgctt aaggcggggg gcgggaaaag agtcaaaaaa ggcagtagcc 51 gttagatgta gcaaaaacgg atggaccaga ttagttgctt aacaacgaaa 101 gatcaagaga gggcgaaaaa ggtaataatt ATTGGaatgt aggacccaca 151 aagaggtgag gaagatcatg ataaaaagga agatgctata gaatattcgt 201 AAGAGCCCGT CGTTTCTCCC ATTACCCTCC AATTAATACA CTATTTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.008 -strand -173 : -180 TTTCCCGC AC RSP00158 Mean Expected Number 0.002 +strand -119 : -109 TAgTTGCTTAA AC RSP00212 Mean Expected Number 0.007 +strand -78 : -70 TAATAATTA AC RSP01501 Mean Expected Number 0.010 +strand -182 : -176 GGGCGGG Totally 4 motifs of 4 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 1361. Group RE: GC-box /AC: RSP01501//OS: Triticum aestivum /GENE: H1 (TH315)/RE: GC-box /TF: unknown ||Identical REs AC: RSP01502 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SEN1 |LOCUS: AT4G35770 |PROD: senescence-associated protein (SEN1) |16944946..16946096 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.33 C - 0.21 1 ggatccataa ttagtttatc acaattgggc cttacggtct tcttatccgt 51 ccgagtcagc aagttatcct cttcaacacg actcacgagg caccgagttg 101 gacttatcat gattcattat ctacgcATTG Tttacatttt ggaatcgact 151 ttggtacata attgaattta tccatagaaa tgatagagac tcgaagatcg 201 GACATAAAAC TTGCTGACGT GACACCCATA CCTTTGTGTC TGTATGTATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00248 Mean Expected Number 0.003 -strand +23 : +14 GtCACGTCAG AC RSP00916 Mean Expected Number 0.002 +strand +13 : +22 GcTGACGTGA AC RSP00917 Mean Expected Number 0.002 +strand +13 : +22 GCTGACGTGA AC RSP01475 Mean Expected Number 0.002 -strand -59 : -67 CCAAAATGT Totally 4 motifs of 4 different REs have been found Description of REs found 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ATGB2 |LOCUS: AT4G35860 |PROD: Ras-related GTP-binding protein, putative |complement(16986843..16989041) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +199 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.37 C - 0.10 1 aaaggcagag atggatttta agctttaatt tgtttcccag atatttttca 51 tctggtccct ctgtttttaa ataattaact aaaacgacta taataattaa 101 taaattatac tatagagtat tttgtgtgga tttttattta ctgttgaaac 151 ttaaggatac aaaagaaaaa caattattca gataattcgt cattagatcc 201 CTTTAATTTT AGTAATTAAG TAAAAAGATT ATAAAAGATG AGAAGGAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00288 Mean Expected Number 0.007 +strand -148 : -143 TGGTCC AC RSP00747 Mean Expected Number 0.002 -strand -55 : -66 CAaCAGTAAATA Totally 2 motifs of 2 different REs have been found Description of REs found 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G35910 |PROD: the same as GENE |complement(17008584..17011454) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +437 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.38 C - 0.22 1 gatgattctc ttctattgct cccaaattgg acaaaacttg tcggttcctt 51 ttaatggatg gttacatgtt tacggtttag catcttttaa atacttatca 101 aaccataatt tctttactaa tcgtctcacc ggtatgggta gactcgtaaa 151 taaccacttt catcttcttc cccaattttt cttgctttct ctaaacccta 201 GTTTCAGACA AAGTAGTGAC ATTTTTCTAA CAATTAAACC AATATCGCCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00416 Mean Expected Number 0.005 -strand -141 : -147 CATCCAT Totally 1 motifs of 1 different REs have been found Description of REs found 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ARAC6 |LOCUS: AT4G35950 |PROD: Rac-like GTP-binding protein (ARAC6) |complement(17023840..17025866) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +349 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.31 C - 0.15 1 atgtgcaact cctttatttt acttttttgt atacaagata aataaattaa 51 tttgaatata cactaaaaaa tcaaacagaa aaaagaagaa gaagtaaaat 101 agtaattatt taaaagacaa cagaagaagt aaaaaaagta aaaagATTGC 151 aaaacagtcg gaaggttgaa tggctgagat taatcgaacg cttcaatggc 201 AATTATTTCC GGCCATCACT TTCTTCTCTA CTTCTTTCTT TCTCTCTCTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.001 +strand -68 : -57 AAAAAGTAAAAA AC RSP00021 Mean Expected Number 0.003 -strand -174 : -185 AAAAAGTAAAAt AC RSP00860 Mean Expected Number 0.001 -strand +43 : +35 AGAAAGAAA AC RSP00864 Mean Expected Number 0.000 -strand +49 : +41 AGAGAGAGA Totally 4 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G35980 |PROD: the same as GENE |complement(17030575..17031695) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.17 1 gacaagtaat tgtgtgatga tgtcacaagc tttgtcgttt ttttatgcga 51 ccggaataaa atacacggcg ttttacagta agtaaaatag tgtttatttc 101 actttcagcc ccacaattta agagaaatta TCAATcaaac cctagtagta 151 tctgaatagt cctacaaaat agaattcgaa ccagcgagct tggtgtttct 201 CGAATTCGAA GCTGAGATCC AAATTAGGTA AAGTAGGTCA CTTTGTGGTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01601 Mean Expected Number 0.006 +strand -104 : -97 TTTCACTT AC RSP01776 Mean Expected Number 0.008 +strand -88 : -78 ACAATTtAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G36105 |PROD: the same as GENE |17083888..17085122 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.39 C - 0.12 1 ttacacaata ctagtactgt atatgctttt atttaatata tccataacca 51 aaataaattt atattaattt tattttgaag tgagtttgtt gcttaaaaaa 101 taaaaaagtt aagcagaact tttgatttcc gaataattaa tttctaggtc 151 aacgaagttg gttccgccgt taactagact aaagattgcg ttttggattt 201 ACTTTGGATT CTAAGCTTCT TTTTTAAATG ATTGCAGATT TGCAGAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.007 +strand +18 : +29 TCTTTTTTAAaT AC RSP00734 Mean Expected Number 0.002 -strand -6 : -13 CAAAACGC AC RSP01527 Mean Expected Number 0.002 -strand -109 : -120 gCAACAAACTCA Totally 3 motifs of 3 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT4G36540 |PROD: the same as GENE |17243586..17245299 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.11 T - 0.37 C - 0.26 1 aagagactcc tcatctcatg ttcataagga catgaccaca tggtaggtta 51 tgtcaattag accccacaac ttctcatctc accttctttg tccccaacct 101 cctccacttt taTCAATttt gtccctctct cactagattt cgaatctcat 151 gtgtgtgggt caatgttgct ttctatttaa agctaagaat aattatatct 201 AATGGATTAC TTTTCTTCCA CACATATATA ACTTAACTCT CTCTTTTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01435 Mean Expected Number 0.008 +strand -110 : -101 TCCCCAACCT AC RSP01453 Mean Expected Number 0.001 -strand -153 : -159 ACCTACC AC RSP01469 Mean Expected Number 0.009 +strand -56 : -47 TCtCATGTGT Totally 3 motifs of 3 different REs have been found Description of REs found 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT4G36610 |PROD: the same as GENE |complement(17265396..17267320) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.29 C - 0.19 1 cttttagttt ctagaattgt tgtgttcttg tactggttaa gaggctaatt 51 aaaaaaaaaa cagaaaagca tagattaaca acccaacacc taacatttta 101 acaaattcca aatccaagtg CCAATtctcc aagttacatt tgaaaagatc 151 gaatggaaaa aatgtttata taatgttgca tcccatttgg gcttctcttc 201 AAACATCTCT CAACAACAAC AACAAAACAA AACTTGCACA ATGGTGAACT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: quinone reductase family protein |LOCUS: AT4G36750 |PROD: the same as GENE |17324575..17326462 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.33 C - 0.17 1 aggtcagacg ttggactcct tgtatgaaac caacagacta ggcccaaatt 51 atcaactcaa aattgaccgt aacatatacg gcgccgtttt tgtagacctg 101 agtgtgataa agtgagctgt taaatcttca cttaacccca tttttaatca 151 cgaaattaga gtggtgatta aaaatacaac taaagttgtt tcaagtgatt 201 GTTTTCATTT ATTTAAATTT TAAATTAATC CAACTTTATC GTTGACGGAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: GGPS1 |LOCUS: AT4G36810 |PROD: |17343378..17344869 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.10 T - 0.27 C - 0.22 1 aaaaaatcta aaaaactgac aagtaattta tctgtaatct aagccagaaa 51 aatatcatct ttatgctata aaaacatttt ccatggactt aaaaacaata 101 aaacaaaaac agtgaaaaaa gaaaaaagat gctttTCAAT aaaagtgaag 151 atcgtcatct ccaccactaa caaggcccat tccgtaacac aaccctatct 201 GTTACTTCCT AGCTTCTCAC TAATGGCCAA TCCAATTCTC CATTCATAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00530 Mean Expected Number 0.006 -strand -79 : -90 TCTTTTTTcACT AC RSP01294 Mean Expected Number 0.000 +strand -123 : -112 TTTCCATGGAcT Totally 2 motifs of 2 different REs have been found Description of REs found 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC: RSP01299 RSP01300 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CBS domain-containing protein |LOCUS: AT4G36910 |PROD: the same as GENE |complement(17390623..17393305) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.35 C - 0.20 1 tccttttttc atatttggac cttaacaaaa aaggaaattg aatcgcacaa 51 ttaaggagcg tttacaacgg tcttattttt ctaatctcaa tttgcagatt 101 tcgttaaaag gccacgtgtt cgattttttt ttaacgcata aattgtATTG 151 Taattccaaa actacatcgt tttgaggttt agccattaaa gtcacagtca 201 CACTTTCGCT TTTCCCAATA CGAACAAGCG GTGACGCATA TCTCCTGTAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -82 : -90 ACACGTGGC AC RSP00080 Mean Expected Number 0.004 +strand -179 : -164 TTAaCAAAAAAGGAAA AC RSP00080 Mean Expected Number 0.004 -strand -164 : -179 TTTCCTTTTTTGtTAA AC RSP00153 Mean Expected Number 0.001 -strand -82 : -91 aCACGTGGCC AC RSP00175 Mean Expected Number 0.001 -strand -83 : -90 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -81 : -90 aACACGTGGC AC RSP00249 Mean Expected Number 0.000 -strand -128 : -136 AGACCGTTG AC RSP00524 Mean Expected Number 0.008 -strand -82 : -88 ACACGTG AC RSP00819 Mean Expected Number 0.003 +strand -90 : -81 GCCACGTgTT AC RSP01003 Mean Expected Number 0.010 +strand -154 : -145 ACAATTAAGG AC RSP01034 Mean Expected Number 0.005 -strand -84 : -90 ACGTGGC AC RSP01103 Mean Expected Number 0.004 -strand -21 : -28 AAACCTCA AC RSP01255 Mean Expected Number 0.002 -strand -82 : -89 ACACGTGG AC RSP01776 Mean Expected Number 0.005 +strand -154 : -144 ACAATTAAgGA Totally 14 motifs of 13 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: similar to patatin |LOCUS: AT4G37070 |PROD: the same as GENE |complement(17464797..17467103) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.37 C - 0.16 1 ctcaaggtcg acgacataat tgattttgtt ccttactata aattatctat 51 tcaaaggaaa atatatacta gctatatata taatccttat tcgtacgaaa 101 tgtatgaaga aaagtctaac caaatatttt tttcgttttt ttaattaaat 151 ctatacgaaa ttgtgcattt atatatcttg acctctatat ccaaaacttt 201 ACCAAAATCT CGATTTATAA TCTTAACTCA AAAGAAGATC GATCAACTAT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G37090 |PROD: the same as GENE |17477226..17478723 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.20 T - 0.25 C - 0.11 1 acaaaataaa ttgaaaatac ttcctcgaca taaaaaaaaa aagtgtataa 51 atatatatct aatggtagtt tagttaagac aaaaaaaaaa aaaaaaaaaa 101 atggtagttt agttaatggg ctgaggtaaa aaggccaacg agagcccatc 151 ataaaatgga acaaaccaag tctctgatta gaagagagga ttctatagcg 201 GTATAATCGT GGTGGTGGTG ATTTTTGGGA ATTTTGAAGA GCCGTTAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00735 Mean Expected Number 0.005 -strand +26 : +19 AAAAATCA Totally 1 motifs of 1 different REs have been found Description of REs found 698. Group TF: DET1; CCA1 /AC: RSP00735//OS: Arabidopsis thaliana /GENE: CAB2/RE: CCA1 BS /TF: DET1; CCA1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G37240 |PROD: the same as GENE |17524455..17525153 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.10 T - 0.33 C - 0.27 1 catggtaatt atagctaata ataaagggtt aaaatatcta cgcaaacaca 51 aaagctgtct tcttccccac ccacttctac agcctgtcat cactcctatt 101 ggttcataaa acgacaaaat cctacgtggc atccattttt tttcttctct 151 tcttctgcaa attctctcta tttatacaca aaccttccat ttctcttccc 201 ATAATTTATT CATTTCACCG GAAAAACTGA GTCAACTCAG AGCGAGTTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -78 : -71 TACGTGGC AC RSP00190 Mean Expected Number 0.007 +strand +28 : +34 TGAGTCA AC RSP00247 Mean Expected Number 0.002 -strand -71 : -80 GCCACGTAgG AC RSP00654 Mean Expected Number 0.001 +strand -133 : -124 CACCCACTTC AC RSP00741 Mean Expected Number 0.001 +strand -178 : -167 AAAgGGTTAAAA AC RSP00858 Mean Expected Number 0.003 +strand -197 : -190 GGTAATTA AC RSP01034 Mean Expected Number 0.002 +strand -77 : -71 ACGTGGC AC RSP01259 Mean Expected Number 0.001 +strand -79 : -72 CTACGTGG AC RSP01301 Mean Expected Number 0.010 -strand -187 : -196 CTATAAtTAC Totally 9 motifs of 9 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G37295 |PROD: the same as GENE |17553554..17554099 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.06 T - 0.43 C - 0.26 1 catccccttg tatcgagggt ctaattctac accttattcc attttatatt 51 ccctaacaat ttttttagtt ttttttttta tattacttta attctaatga 101 aaactcctat cttccttcct ctccatcctt tttcatctac ctttgaatct 151 tttgacactt gtatataaag ctttacttcc tcctttgtta ctccttttct 201 ATCAATCACC AAAACACATT CATTGTCTTA AACCCTAAAC CTCAAGAACC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +38 : +30 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +30 : +38 AAACCCTAA AC RSP00873 Mean Expected Number 0.007 +strand -38 : -28 ATATAAAGCTT AC RSP01020 Mean Expected Number 0.006 +strand -104 : -98 ATGAAAA AC RSP01103 Mean Expected Number 0.007 +strand +37 : +44 AAACCTCA AC RSP01303 Mean Expected Number 0.006 +strand +29 : +38 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand +29 : +38 TaAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 809. Group TF: Dof2 /AC: RSP00873//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof2 BSopt /TF: Dof2 945. Group TF: GAPF /AC: RSP01020//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 2 /TF: GAPF 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CYP81D8 |LOCUS: AT4G37370 |PROD: cytochrome P450, putative |complement(17569822..17571698) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.32 C - 0.18 1 gaggactatt tttcaaactt tcttgaggaa caagacttga cttttgtaac 51 cataaagata gaatcaagtc agattttgct acttcgagaa cattggtcaa 101 tgagtcaaaa tgtcaaatag TCAATactaa aatcaaaatt gaactttgtt 151 tattaatttt gttctaatct atttaacccc acaaaagttt ccaaaactgc 201 TTCACTCACC AAAATAGATC TAAAACATGG AAACCAAAAC CCTAATTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.009 +strand -100 : -94 TGAGTCA AC RSP00279 Mean Expected Number 0.004 -strand +45 : +37 TTAGGGTTT AC RSP00331 Mean Expected Number 0.005 -strand +34 : +26 GTTTCCATG AC RSP00369 Mean Expected Number 0.004 +strand +37 : +45 AAACCCTAA AC RSP01303 Mean Expected Number 0.008 +strand +36 : +45 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CYP81F4 |LOCUS: AT4G37410 |PROD: cytochrome P450, putative |17590766..17592914 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.31 C - 0.15 1 ataaaaaatt tgaagataca aaaacagttc ctttttctta ataaatcaaa 51 atcaaagaga tagtgtactg aagtgaagag ccagccacta tacgacatac 101 gtatgtaatt acgttttaat aacctgatgg caaataataa tatattttcg 151 tcaaaataaa atggtcgtat ctctttgcta aaaccaaaat gtcatgatgt 201 GATTACTCAA TTTTCTACTA TAAATAGATT ACCAAATCAT TCGATCGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01475 Mean Expected Number 0.002 +strand -17 : -9 CCAAAATGT Totally 1 motifs of 1 different REs have been found Description of REs found 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CYP91A2 |LOCUS: AT4G37430 |PROD: cytochrome P450 81F1 (CYP81F1) (CYP91A2) |17597104..17598952 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.37 C - 0.14 1 atgggttaat atctttaatc ttcgacgagc acatagaaac aaatttcaga 51 gtttttattt aacttaataa tggagttttg agagaaatga taatcataat 101 atggagaact cgaaatcgta gaagatgttt tttgtttttt tcctctggtc 151 ttttaaaacg aaaagcacaa ctttcaagtt ccactactaa ttgtcacgtt 201 ACAGATATGA CATCACTACT TTGATTTGAG TAAAATTTTC TCTATAAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00892 Mean Expected Number 0.009 +strand -195 : -187 TTAATATCT AC RSP01017 Mean Expected Number 0.009 +strand -166 : -159 AGAAACAA AC RSP01296 Mean Expected Number 0.008 +strand +42 : +50 CTATAAATA Totally 3 motifs of 3 different REs have been found Description of REs found 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: peroxidase 50 (PER50) (P50) (PRXR2) |LOCUS: AT4G37520 |PROD: the same as GENE |17631556..17633243 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.12 T - 0.31 C - 0.12 1 gatcatatac acacacaaac attgatagag aacaaaacga aattggaaaa 51 attcatttta aattttaaaa atacaaaaat aatggaattg gaaaaagtct 101 tttttttgta aatactaatc aaatatttta aaattaacaa aaaatTCAAT 151 agtaaaaaaa agccatcaaa aaatgatgtc aacaattaga taagtattta 201 GTCTTTTTCT CTTTTAAAAA ATGATATGCA AGCTGGCCGG CGCTACTTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01250 Mean Expected Number 0.007 +strand -60 : -51 AAAATTCAAT Totally 1 motifs of 1 different REs have been found Description of REs found 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: formamidase, putative / formamide amidohydrolase |LOCUS: AT4G37550 |PROD: the same as GENE |17643575..17645823 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.29 C - 0.17 1 aactttttgg tcatgcatgc attgccacac acagagggag acacatgtct 51 tttgatacta tccacttggt tcagaaaaaa acaaaaagtc acactttttg 101 aaaaagtgaa aacgtctcaa gatatggtga aatctGCAAT ctttttttac 151 tgtctttttg ttatgataga taaggaatct gcaagaacca atgatcactc 201 TTTTCACTGT ATCAAGGACA AAAGAAAGAG AGAAAACAAA AGAGTTATAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.002 +strand -189 : -182 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -182 : -189 CATGCATG AC RSP00522 Mean Expected Number 0.006 +strand -139 : -133 CCACTTG AC RSP00530 Mean Expected Number 0.001 +strand -61 : -50 TCTTTTTTtACT AC RSP00683 Mean Expected Number 0.002 -strand -131 : -140 aCCAAGTGGA AC RSP00861 Mean Expected Number 0.003 +strand +23 : +31 AGAAAGAGA AC RSP01063 Mean Expected Number 0.002 +strand -38 : -27 ATGATAGATAAg AC RSP01074 Mean Expected Number 0.001 +strand -190 : -181 TCATGCATGC AC RSP01074 Mean Expected Number 0.001 -strand -181 : -190 GCATGCATGa AC RSP01091 Mean Expected Number 0.005 -strand -140 : -150 ATAGtATCAAA AC RSP01470 Mean Expected Number 0.006 +strand -190 : -181 TCATGCATGc Totally 11 motifs of 9 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF 992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ribosomal protein L12 family protein |LOCUS: AT4G37660 |PROD: the same as GENE |17695490..17696264 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.34 C - 0.17 1 tagtctttat gttcccaaag aaaaaacaaa tattcaattt tttttaacat 51 atatatatat ttactttttt catcctttta gtttggttgg gtttgatttg 101 ggtgcatact agttgttttc gttatgggcc ttattatgtg ggccttagac 151 agcccatttt atttgacgag caaaaagtac cggcaaaatg aaatgaaatt 201 GAACGGACGG CGAAAACCCT AACAAAAACC TCCATTCACC GGCGAAAATG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.006 -strand -132 : -143 AAAAAGTAAAtA AC RSP00279 Mean Expected Number 0.001 -strand +22 : +14 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +14 : +22 AAACCCTAA AC RSP01104 Mean Expected Number 0.002 +strand +26 : +33 AAACCTCC AC RSP01303 Mean Expected Number 0.003 +strand +13 : +22 aAAACCCTAA AC RSP01463 Mean Expected Number 0.004 +strand -150 : -138 ATaTATATATTTA Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G37670 |PROD: the same as GENE |complement(17696053..17698830) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.30 C - 0.20 1 aaacaataaa taataataga aaaagactat tgaagaaaat atggaaaaat 51 aaacaataaa taaaatacct acttaccgtg ggtcccacta cggtactact 101 gccgccttct ccgaccgtaa tcagccgtca cctgccggtt tagttACAAT 151 aacaatttag tatttatttg aattctttct ctcatcgaag tctaaggaag 201 ATGGAGCGAG GAGCTTTAGT GGGTTCTTCT TCTACTTCTA GCTACTATGT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: squalene monooxygenase |LOCUS: AT4G37760 |PROD: the same as GENE |17743881..17746672 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +198 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.33 C - 0.18 1 ctctaacttc atccagttct gttcgttatg ataaaaaaaa aaaatataac 51 aaaatctata agatttctaa tttgatcaga actttataaa agtctaataa 101 cttttgtcac attataagct tttaggaaaa aataaaacga ccgaccttat 151 ttaattgcat tgtcctaact tcccaaacgt tttaatgaga ttttgcgtaa 201 TAGAGAAACA AGCCACGAGT TCGATTCACA GCCACAATAA TCTTTCTCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.005 +strand -154 : -143 TAACAAAaTCTA AC RSP00404 Mean Expected Number 0.006 +strand -9 : -3 TTTGCGT Totally 2 motifs of 2 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: cytochrome c oxidase-related |LOCUS: AT4G37830 |PROD: the same as GENE |complement(17787473..17788821) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.25 C - 0.19 1 acaaacaaga tttaaaacat caaagattcc atctaaactt cattcatctt 51 caatcttcaa catccttcaa tgactagtat gtatgtacat aagtaaaatt 101 gttgataaga aaacaaaACA ATgatgggct aaaatagccc ataaaaggcc 151 cattaaactt gggtttagac tttagattca acgacgccag attagtgagt 201 CACATAACCC TCTTGGAAAG AGTCTCAACA CTTGCAGAGA AAAAGAACAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00857 Mean Expected Number 0.007 +strand -172 : -163 CCATCTaAAC AC RSP01061 Mean Expected Number 0.000 +strand -6 : +3 GTGAGTCAC Totally 2 motifs of 2 different REs have been found Description of REs found 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SHM1 |LOCUS: AT4G37930 |PROD: |complement(17831740..17834859) |SUPPORT | 15 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.15 T - 0.22 C - 0.19 1 ttctgtctta aagggaaaca aatcatcgtc gtcaccaaat catcacaatt 51 cacaaaggtt ggtgtagaca gggacctgag agataacgac aaagaaacaa 101 caaatataaa ataaaaatca gaagaaaata taaataaaaa aagagggaaa 151 aaattcgaaa atttgctgca accaccaaaa gctcagccaa aagcagaggc 201 CACAATTCTC TCAAACAAGA TAAACCCAAT TTTGTTATTT TTGTTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00018 Mean Expected Number 0.008 +strand +37 : +43 ATTTTTG AC RSP00092 Mean Expected Number 0.008 -strand +37 : +31 TAACAAA AC RSP00874 Mean Expected Number 0.008 +strand -195 : -185 TCTTAAAGGGa AC RSP00914 Mean Expected Number 0.004 -strand -157 : -166 GATGATTTGG AC RSP00915 Mean Expected Number 0.004 -strand -157 : -166 GATGATTTGG AC RSP01115 Mean Expected Number 0.008 -strand +43 : +37 CAAAAAT AC RSP01454 Mean Expected Number 0.001 -strand -138 : -144 ACCAACC AC RSP01755 Mean Expected Number 0.005 +strand -32 : -25 CAACCACC Totally 8 motifs of 8 different REs have been found Description of REs found 17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4 90. Group TF: GAmyb /AC: RSP00092//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TAACAAA box /TF: GAmyb ||Identical REs AC: RSP00393 RSP01051 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G38050 |PROD: the same as GENE |complement(17869374..17872476) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.28 C - 0.17 1 catcataagg atagtttagt catttagttg aggtaaagac aaaccgctga 51 tgtcgacatg agtgagaaag tgaaataacg ttacgctctg tttctcactt 101 cagagagcca aaaagttagc aaaaaaagga agaaaaagaa gctggaaaat 151 gaacttacag ctcaagttca cttcacaagc ttctctagtc tttcttaaat 201 TTTGAGTCTT TGTTGGAAAC AATGGATTCC GGGTCGGGTT TCGATCCGGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00943 Mean Expected Number 0.003 +strand -33 : -23 TCAcTTCACAA AC RSP01033 Mean Expected Number 0.008 -strand -72 : -81 CCTTTTTTtG AC RSP01596 Mean Expected Number 0.003 -strand -23 : -33 TTGTGAAgTGA Totally 3 motifs of 3 different REs have been found Description of REs found 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G38090 |PROD: the same as GENE |complement(17883694..17884720) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.31 C - 0.18 1 ctagtctcca aaattctatt tcgcgtgaaa atttgtttgt tttcttctct 51 aaaccaatgt aaaccaaacc gcaaatcaat tctaatttca ataccaatgt 101 ataccgaacc taaaaaTCAA Ttttaatttc aaatgttact atcaaatgtt 151 ttctaatcta gtttagcaat taaattgaga agattataat atagctagct 201 AGACGGCAAA AAGGCAACAA TCAGATGTGG GTGGGCGTAC CGGTAGCAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00503 Mean Expected Number 0.002 +strand -6 : +2 CTAGCTAG AC RSP00503 Mean Expected Number 0.002 -strand +2 : -6 CTAGCTAG AC RSP00654 Mean Expected Number 0.001 -strand +33 : +24 CACCCACaTC AC RSP01056 Mean Expected Number 0.004 +strand -69 : -59 AATGTTACTaT Totally 4 motifs of 3 different REs have been found Description of REs found 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G38430 |PROD: the same as GENE |17986461..17988801 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +176 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.29 C - 0.19 1 ttgatataac acaagcgcat gctcctctta tgagaacggc cgtgggatat 51 aatttaatct cgccgttaaa aaatgtgacg accgtgagtt aacggtttat 101 ctgttaccaa cctcatacct gtccctaacg gcagaggata acgccgtgag 151 tatggatgga tgggagagaa aagaagagag agagtgtgag tgaggaaatg 201 AAAGGAGTCT TTTTTATTTG TTATCTCTCA TCTCTCTCTC TCTTTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00756 Mean Expected Number 0.005 -strand -11 : -18 CTCACACT AC RSP00861 Mean Expected Number 0.001 -strand +47 : +39 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 +strand -26 : -18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +39 : +31 AGAGAGAGA AC RSP01015 Mean Expected Number 0.007 +strand -6 : +4 gAAATGAAAG AC RSP01454 Mean Expected Number 0.007 +strand -95 : -89 ACCAACC AC RSP01497 Mean Expected Number 0.004 +strand -162 : -153 GCCGTgGGAT Totally 9 motifs of 6 different REs have been found Description of REs found 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: geranylgeranyl pyrophosphate synthase |LOCUS: AT4G38460 |PROD: the same as GENE |17994779..17996198 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.37 C - 0.17 1 ctttctctgt tttgaggttc tcttacagat gaaaagctgt gtaattaaaa 51 atcgatgttc ttcttctgtt cttgtaagat tttggatttt tccaatttct 101 gacaaagtTC AATtaaaaaa cttgactgac attttgaaag cgacgtgtct 151 gtcttagaaa tcaatcatat attggcactt cctatcaaga gagtttggct 201 GAACCCAATT TTACTAAATT ATCATTATCT CAAACACAAC AAGGATAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.007 +strand -47 : -37 tTAGAAATCAA AC RSP00204 Mean Expected Number 0.001 -strand -52 : -61 GACACGTcGC AC RSP01035 Mean Expected Number 0.007 +strand -58 : -52 ACGTGTC Totally 3 motifs of 3 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G38480 |PROD: the same as GENE |18003910..18006134 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +41 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.26 C - 0.20 1 cttcatttag catcaaagca aatgcaccca aaaatagaaa aaaaaaaaaa 51 aggctcacgc cgaagcaata aaaccaccac aaaaagtcaa aagccaaagt 101 caaaagagag gcttcgtggg ccctaaaagg gatacacttt ggttctctgt 151 ttctgttctt cttctctaat aagtttttct ctagtcgttc aatattactt 201 AACGATAAAT CAGACTTTTT AAACTCGATC TGGTGGGGAC GATGAGTGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -120 : -109 AAAAAGTcAAAA AC RSP00441 Mean Expected Number 0.005 -strand -58 : -67 AcCAAAGTGT AC RSP01214 Mean Expected Number 0.005 -strand -71 : -80 CCTTTTAGGG AC RSP01621 Mean Expected Number 0.005 +strand -68 : -59 TACACTTTgG Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: AT-MCB1 |LOCUS: AT4G38630 |PROD: 26S proteasome regulatory subunit S5A (RPN10) |complement(18057124..18059534) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.33 C - 0.13 1 aaagaaagac tttagttata ggaattactg taatgtggtc tgtgtttctt 51 ttattcatta ataaatcaac tttgttttgc tttttatcaa aaacaaccat 101 tggggctaaA TTGAaataaa cgtaaaacat tagggtctaa aaggagaaag 151 taaaaaagta aaggggatat ttaaagaaga acaatgttat tattatcggt 201 CTAAACTAAA ATCTAAATCT TGCCTTCCTG ACTTTCTCTC TACGACAGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01303 Mean Expected Number 0.004 -strand -62 : -71 TAgACCCTAA Totally 1 motifs of 1 different REs have been found Description of REs found 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: thaumatin, putative |LOCUS: AT4G38660 |PROD: the same as GENE |complement(18066171..18068095) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +117 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.31 C - 0.20 1 ttacaagtga aataataatg aataatgata ttgaaaacca tttggtccta 51 tctcttccta cccataaatc ttttttgtag ttattttaac ccaattaaaa 101 agatTCAATa ataagtgcac aagagaaatt ttgtcaggtt tcaggcatag 151 agcccagtaa cactcaataa caaattcaag gaaaaaaata acaaaacccc 201 ATTTCAACTC AAATAGCTTC ACAGTTTTAC TAATCTCTCT CATCTTCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00746 Mean Expected Number 0.002 -strand -106 : -117 ATtGGGTTAAAA AC RSP01472 Mean Expected Number 0.002 +strand -148 : -138 TCTtCCTACCC AC RSP01601 Mean Expected Number 0.007 -strand -189 : -196 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 1341. Group RE: Box-I /AC: RSP01472//OS: Pisum sativum /GENE: PsCHS1/RE: Box-I /TF: unknown ||Identical REs AC: RSP01528 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: PRP4 |LOCUS: AT4G38770 |PROD: proline-rich family protein (PRP4) |complement(18096803..18098558) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.12 T - 0.29 C - 0.17 1 taacaacgag aagatggacc atgacgacat taaataaatg atacacaata 51 caaaataata ggaaccgccg aatccaatta ttgttggtaa aaaaaaaaaa 101 aactaaacgt taattaattc ggaagtaatt attacgaTCA ATcttcagaa 151 aaatctttga taagaccatt atataaacga gaagaagtct cactataatc 201 ATATCATCAC CTTCCCCACT AATACTCTAT AGTTTGTTTT TGTTCTTCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.007 -strand +38 : +32 AACAAAC AC RSP00914 Mean Expected Number 0.005 -strand +8 : -2 GATGATATGA AC RSP01060 Mean Expected Number 0.006 +strand -126 : -118 CAATTATTG AC RSP01060 Mean Expected Number 0.006 -strand -118 : -126 CAATAATTG AC RSP01077 Mean Expected Number 0.003 -strand -118 : -126 CAATAATTG Totally 5 motifs of 4 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ER lumen protein retaining receptor family protein |LOCUS: AT4G38790 |PROD: the same as GENE |18111364..18113180 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.27 C - 0.16 1 acgaacatat atatacgaag gcattcatgg gccttttaga aaaacaatag 51 atacgattat gggcctaatt tatggattca gtcacggctc atttagtatt 101 taagagtaag agatgtgtgg aaggggtgat ttggtaattt acattcaagt 151 caaccaaaac cagacttttt aatctctctc gatcagaagt tacctttttc 201 ACTTTTGCCG AGAAAATCAG AGACAGAAGA AGAAGAAAAG CGAAAAAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00917 Mean Expected Number 0.002 -strand -47 : -56 GTTGACTTGA AC RSP01601 Mean Expected Number 0.003 +strand -4 : +4 TTTCACTT AC RSP01621 Mean Expected Number 0.005 +strand -3 : +7 TtCACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G38920 |PROD: the same as GENE |18147205..18149261 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.25 T - 0.29 C - 0.20 1 agacgtttct gtttcaatct ctccaaatat aagccaaaca ggatatgatt 51 ttggttctgg tggatcattc tagtgggccg tatgatgggc ctaagaataa 101 ggcaactaat ctgggtcgaa tacgggtaga cccgggttga gatcccgacg 151 tgtgcgcttc gctgttgtag tagtagtata tctcatcatc aatcaggctt 201 TTGAGCCTCG GAAACTCAAT CCTTGTATAT TCAACGGAGA GAGATCTGCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.004 -strand -47 : -54 CACACGTC AC RSP00566 Mean Expected Number 0.000 +strand +21 : +30 CCTTGTATAT AC RSP00865 Mean Expected Number 0.001 +strand +36 : +44 GGAGAGAGA AC RSP00941 Mean Expected Number 0.005 +strand -189 : -182 TTTCAATC AC RSP01594 Mean Expected Number 0.005 -strand -182 : -189 GATTGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: RD19 |LOCUS: AT4G39090 |PROD: cysteine proteinase RD19a (RD19A) / thiol protease |complement(18214569..18217476) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.30 C - 0.23 1 cggcactgct aacaacaagt tgaacctatc ccattccatt actccatacc 51 cattcaatga ttaacacgtg gttctacatc attggttaac tctctccttt 101 ccccttggat aaggcatctt aaaataataa taaataccat aaatatcttc 151 cgattttttc tccgactata ataatgatga caacaatatc ttttaaaatt 201 ATCTTAAAAG AAACCGAAAG CTAATCTCCA AAGGGAAAAA GACGTGTAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00423 Mean Expected Number 0.009 +strand +41 : +46 GACGTG AC RSP00424 Mean Expected Number 0.009 -strand +46 : +41 CACGTC AC RSP00524 Mean Expected Number 0.006 +strand -137 : -131 ACACGTG AC RSP00534 Mean Expected Number 0.001 +strand -30 : -18 ATAATGATGAcAA AC RSP00879 Mean Expected Number 0.008 +strand +15 : +21 CGAAAGC AC RSP00978 Mean Expected Number 0.002 -strand -129 : -138 AcCACGTGTT AC RSP01167 Mean Expected Number 0.007 +strand -61 : -53 TAAATATCT AC RSP01255 Mean Expected Number 0.001 +strand -137 : -130 ACACGTGG Totally 8 motifs of 8 different REs have been found Description of REs found 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: SHL1 |LOCUS: AT4G39100 |PROD: |complement(18217933..18220276) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.30 C - 0.27 1 aagtcaggac aagtcataat gagtaattgc ttacgtggct aattttacat 51 gattcacgac aaaagggagc ggcctagagg cgcgtatcac acacgcgctt 101 ccacttaaaa gctgacgtgg tcaATTGGct atctgacatt ctatttaccc 151 attttctccc tttctttcct ctatattcac gatcctgcca ttgtacaccc 201 AATCATACGC TCCTGAGATC CTCATGACTT GTTCTTACCG TACTCCGCGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 +strand -141 : -135 CAAAAGG AC RSP00043 Mean Expected Number 0.002 +strand -169 : -162 TACGTGGC AC RSP00208 Mean Expected Number 0.000 -strand -80 : -91 aCCACGTCAGCT AC RSP00214 Mean Expected Number 0.002 +strand -88 : -81 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -81 : -88 CCACGTCA AC RSP00247 Mean Expected Number 0.006 -strand -162 : -171 GCCACGTAAG AC RSP00248 Mean Expected Number 0.004 -strand -80 : -89 aCCACGTCAG AC RSP00248 Mean Expected Number 0.004 -strand -162 : -171 GCCACGTaAG AC RSP00460 Mean Expected Number 0.005 +strand -193 : -184 GACAaGTCAT AC RSP00467 Mean Expected Number 0.003 +strand -83 : -74 TGGTCAATTg AC RSP00523 Mean Expected Number 0.010 +strand -110 : -104 ACACGCG AC RSP01034 Mean Expected Number 0.008 +strand -168 : -162 ACGTGGC Totally 12 motifs of 11 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G39140 |PROD: the same as GENE |complement(18229325..18232048) |SUPPORT | 5 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +772 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.17 T - 0.32 C - 0.24 1 aaaatctata taaaaaaatc gaaataacca gtatctgttc aattcggttt 51 gatttgattt tgttatttgg tacggtttta gagctctgat cacaacagac 101 agtcacagta cacacaccta ccggaacctg acggcgtgaa gtaaaccgtc 151 agaaaagact tgtattcgtc tctttccctc tcttcgctct ctctctctct 201 CTCTAAAGGA GGAAGGAACA AAGCAGTGCT CTCGTTTCAT TTTTCTCCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.007 +strand -88 : -79 CaCACCTACC AC RSP00607 Mean Expected Number 0.000 +strand -148 : -133 TTTGATTTTGTtATTT AC RSP00864 Mean Expected Number 0.002 -strand +4 : -5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +2 : -7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -1 : -9 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -3 : -11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -5 : -13 AGAGAGAGA AC RSP01184 Mean Expected Number 0.002 +strand -89 : -78 ACaCACCTACCG AC RSP01283 Mean Expected Number 0.000 -strand +3 : -14 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -2 : -18 GAGAGAGAGAGAGcGAA Totally 10 motifs of 5 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 583. Group RE: AT-rich F /AC: RSP00607//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich F /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G39235 |PROD: the same as GENE |18268043..18269320 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +465 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.36 C - 0.18 1 tttttagtca aaagttgaga cgtggttggt gaaattggcg gctttttatg 51 actcaacttt ctttgagacg tgggctgtta tcctaataga cgttgtaata 101 atgtttttAT TGGgccatcg tgaaaggccc atattgttaa cattattata 151 ataaaacgat gcgtttttca ccacttgttc tgcaaggatt aacagcgtct 201 TCTCGTTGTA GCTGATTACT AAAACTAAAC AAGTCTAGAA CCTCCTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.003 +strand -53 : -45 ATAATAAAA AC RSP00030 Mean Expected Number 0.004 -strand -158 : -164 AGCCGCC AC RSP00057 Mean Expected Number 0.003 -strand -127 : -136 cCCACGTCTC AC RSP00057 Mean Expected Number 0.003 -strand -175 : -184 aCCACGTCTC AC RSP00522 Mean Expected Number 0.009 +strand -30 : -24 CCACTTG AC RSP00680 Mean Expected Number 0.006 +strand -11 : -2 TAACAGcGTC AC RSP00871 Mean Expected Number 0.004 -strand -144 : -153 GtTGAGTCAT Totally 7 motifs of 6 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: microtubule-associated protein-related |LOCUS: AT4G39320 |PROD: the same as GENE |18289049..18289851 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.31 C - 0.18 1 cgtcatttct attaagtgga gagtaaaagt ctgatgctaa aaaaataatc 51 gatttacttt cgcctttgtg tctctttgta tccccaccac ctccttatct 101 agttaaccgc gtaacgagat ggacgggcac aactatatac atacaagacg 151 tgtgtgtgtg tgttcatgcc tatataatag ctaatgttct tgtaagttat 201 AACTCGAACA AGAAACAGTA AGAGAACTTA TAAATAGAGA AGGCTATATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.002 -strand -47 : -54 CACACGTC AC RSP00837 Mean Expected Number 0.004 +strand -84 : -75 AGATgGACGG Totally 2 motifs of 2 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: mitochondrial substrate carrier family protein |LOCUS: AT4G39460 |PROD: the same as GENE |complement(18355987..18358887) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +297 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 1 ctgtatgtat acacgagact ccacaagtaa aaaatttaaa taaaatttgt 51 gacttcatta acaagaacaa atttcccatt tttatacaaa acctttgtct 101 tttaggttaa ctaacgtata gtacattaca agaaactgat acgggctttt 151 aataggctag tgtgtcggta taggcccatt agtaaacaga agaagctttt 201 AATCAATCCT CTTGCGGAGA AACTTTGGGA AGAGCCGAAG AGAAGTCGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00203 Mean Expected Number 0.005 -strand -81 : -90 TATACGTtAG Totally 1 motifs of 1 different REs have been found Description of REs found 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: CYP96A12 |LOCUS: AT4G39510 |PROD: cytochrome P450 family protein |complement(18368797..18370646) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.17 T - 0.39 C - 0.20 1 cgaccttcgt tgcagtgtct gggaccgtga attctgatgc acttctcgat 51 ttgtctatcc tcttaaagtt ggtttgtcat ttagtgtctg aaattgtaag 101 attatggacc cttctttaca agtcctccaC CAATtctgtc tcatccattt 151 gtgtggttag tagcttcacc agcttaacac tttcactaat cttaattctt 201 AAGATATGAA AAGCAGTTGA ATGAATGCAT TGGTAATTTC TTTCTTTTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.008 +strand -112 : -102 TGAAATTGTaA AC RSP00444 Mean Expected Number 0.001 -strand +50 : +37 AAaAAAGAAAGAAA AC RSP00778 Mean Expected Number 0.002 +strand +18 : +27 TGAATGAATG Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: kelch repeat-containing F-box family protein |LOCUS: AT4G39590 |PROD: the same as GENE |complement(18387325..18388726) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +9 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.34 C - 0.22 1 gtattataag gcaaggctta tgttcatgtc ctgtaaacta aaggcccata 51 attcacatgg tatcttttgg cccatgggct aacatattat tggttttcct 101 cgcgcaagat aacgtgtccg agatttctgg aatctgaaaa accctaaaag 151 gaagtttgtt ccttgataag ttgttttctt ttcgctagcg aatttgcttc 201 AGAAAATTTA TGTTCCCAAT GTCTTCCACA TCCAGATCTT CCGCCGCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand -54 : -62 TTAGGGTTT AC RSP00331 Mean Expected Number 0.007 -strand -137 : -145 GATACCATG AC RSP00369 Mean Expected Number 0.001 +strand -62 : -54 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -158 : -54 GGCCCA-- ** bp --ACCCTAA AC RSP01214 Mean Expected Number 0.002 -strand -50 : -59 CCTTTTAGGG AC RSP01303 Mean Expected Number 0.003 +strand -63 : -54 aAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G39630 |PROD: the same as GENE |complement(18397589..18399381) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.44 C - 0.16 1 catcgaattt attagaaaca taactatttt taaaaaaata tcacaattcg 51 ggctttattt agaaatgtta tttggtgatc ataatattat tgagcccatg 101 ggccgtattc aactttatgg atattttcgt aatttcgttt ctttaatttc 151 gtttaagcgt aactcccgcc catttattta tttaatatta ttttcaaaac 201 CCCTTTTGAT TTTGGGGGTT TTTCATCTTC CTCACTGTTT CTAGGGTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.004 +strand -179 : -167 AAcTATTTTTAAA AC RSP00745 Mean Expected Number 0.002 +strand -139 : -128 GAAAtGTTATTT AC RSP01016 Mean Expected Number 0.003 +strand -187 : -180 AGAAACAT AC RSP01501 Mean Expected Number 0.001 -strand -30 : -36 GGGCGGG Totally 4 motifs of 4 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1361. Group RE: GC-box /AC: RSP01501//OS: Triticum aestivum /GENE: H1 (TH315)/RE: GC-box /TF: unknown ||Identical REs AC: RSP01502 ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G39860 |PROD: the same as GENE |18499838..18501636 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.39 C - 0.16 1 tagattgttc agtacaaaac tctatttctg gcatgtcaat aaataacaaa 51 tgctaatttt ggctcttaat cttgttgata gaatactaaa cttgcaatgc 101 tttttacact aatctttatc tctttatata tttattttta aaaactcttc 151 tttccttttt ttctgattta aagtacaaaa aaaaaacaat acatctttcc 201 ATTGAACTAG AAGAAAACAT TTTCACTGTC CTTTTGAATC AGAAGAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.007 +strand -71 : -59 AtTTATTTTTAAA AC RSP00228 Mean Expected Number 0.005 +strand +16 : +27 AaCATTTTCACT AC RSP00628 Mean Expected Number 0.007 -strand -192 : -199 AACAATCT AC RSP01032 Mean Expected Number 0.005 -strand -139 : -148 CCAAAATTAG Totally 4 motifs of 4 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: ribosomal protein L23 family protein |LOCUS: AT4G39880 |PROD: the same as GENE |18504531..18505332 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.33 C - 0.16 1 tgttgttgta taaatctgta gtaaaagaaa tcttgttgtc ttgtaacttg 51 gctaaaatca catatatgtt actctctctc acttgtaatg atgattttga 101 aataacaaaa taaaaccacc tattaggctc attcggccca ttaaggccca 151 ttaaagcata tgtgtgtgtg aagagggatt aattttagtg gggaagaatc 201 AAAGAAGAAA AACCCTTGCT ACTGCTTTTC ATTTCTGACC TAAAAGCTCA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G39900 |PROD: the same as GENE |complement(18508364..18510547) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +264 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.30 C - 0.20 1 aataattaaa aaattatgaa atccctaact aatcaagttt aattagtaac 51 atgatcgagg agataataga aaaagtaaaa gggtagattg gtaatttaag 101 ggaggacgaa gaatgaggat ttgtcgttat cccgtgaATT GAtgtcgcaa 151 tcagatgaag gagaagccat cacaggagaa gagagcgtct tcctcatctc 201 TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 +strand -131 : -120 AAAAAGTAAAAg AC RSP00864 Mean Expected Number 0.001 -strand +51 : +43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +49 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +47 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +31 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +29 : +21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +19 : +11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +17 : +9 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +15 : +7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +13 : +5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +11 : +3 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +9 : +1 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +7 : -2 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +5 : -4 AGAGAGAGA AC RSP00933 Mean Expected Number 0.002 -strand -181 : -193 TTcATAATTTTTT AC RSP01283 Mean Expected Number 0.000 -strand +50 : +34 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +48 : +32 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +46 : +30 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +44 : +28 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +42 : +26 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +40 : +24 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +38 : +22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +36 : +20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +34 : +18 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +32 : +16 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +30 : +14 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +28 : +12 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +26 : +10 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +24 : +8 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +22 : +6 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +20 : +4 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +18 : +2 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +16 : -1 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +14 : -3 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +12 : -5 GAGAGAGAGAGAGAGAt Totally 46 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT4G39955 |PROD: the same as GENE |18530537..18532253 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.35 C - 0.16 1 cacatacaac tttattattt tttaattctt gtgggaataa aatttcaaag 51 gcaggaacgg gaagtccacc aaaaaggtgt tattgtaagg aatcaaaaca 101 tgtcacgtaa tcactaagaa ttatattgta attattttta atCCAATtct 151 tattaattac ctttttttta ttaaggtcac ttgtacttgt ctctgtctct 201 GCAAGTCTCA TCAGAAGAGG AAGAGAATCA ATGGCGAGTT GCTTCAGCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.002 +strand -71 : -59 AATTATTTTTAAt AC RSP00140 Mean Expected Number 0.003 +strand -71 : -59 AATTATTTTTAaT AC RSP00454 Mean Expected Number 0.003 -strand -92 : -102 TACGTgACATG AC RSP00749 Mean Expected Number 0.006 +strand -78 : -67 ATaTTGTAATTA AC RSP00858 Mean Expected Number 0.009 -strand -40 : -47 GGTAATTA AC RSP00933 Mean Expected Number 0.006 +strand -190 : -178 TTTATtATTTTTT AC RSP00979 Mean Expected Number 0.007 +strand -199 : -190 aCATACAACT AC RSP01600 Mean Expected Number 0.010 +strand -158 : -151 TTTCAAAG AC RSP01640 Mean Expected Number 0.005 +strand -10 : -1 CTcTGTCTCT AC RSP01641 Mean Expected Number 0.006 +strand -16 : -7 aCTTGTCTCT Totally 10 motifs of 10 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: |LOCUS: AT4G39970 |PROD: the same as GENE |complement(18536120..18538478) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.35 C - 0.14 1 ctttattgga tgatgatagt tttttatatc tgcaaaaaag tattatttta 51 cagaatctta ttcaaaatcc tataatattc atcaactaat tatttgaaca 101 aaaatacaaa aatggagcgg taaaagttag ttATTGAccg ttatttgtaa 151 agaaaattag gttttcgcaa attatagcca ccacagattg tttttttttt 201 CATTTTATCT TGAGAAGAAC CACACACACC CAGAGAGAGA CAGAGATTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00593 Mean Expected Number 0.004 +strand -148 : -140 GAATCTTAT AC RSP00628 Mean Expected Number 0.010 -strand -9 : -16 AACAATCT AC RSP00864 Mean Expected Number 0.001 +strand +32 : +40 AGAGAGAGA AC RSP00920 Mean Expected Number 0.002 +strand -79 : -68 AAAAGTTAGTTA AC RSP01640 Mean Expected Number 0.005 -strand +45 : +36 CTcTGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 4: GENE: expressed protein |LOCUS: AT4G40045 |PROD: the same as GENE |complement(18559778..18560651) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +309 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.31 C - 0.19 1 tttacccaaa ttatctattc aactttgtga tgaatgggtt ttaagtttca 51 acatttgagc tcaagaacga agtaaaaagg ttgatacttt tttacaaatg 101 atgaaaggtg ccagagATTG Aatcctagcc gtcaaataat aaatcaaaac 151 gccaagaaca aaggtgtctc tgtgagattg aatcgtagcc atcgagtcca 201 ATTTCTAACC GGAACCGCTT GATTTCGCTG TCTTCTAGTT CTGCGACCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.003 +strand -56 : -49 CAAAACGC Totally 1 motifs of 1 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01075 |PROD: the same as GENE |complement(26881..27448) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.32 C - 0.27 1 acagagatta tcagagatag agagagagca ataactatga tctcgatttt 51 aacccacaac atcacattca agacagagat ccaaaacccc acatggcctt 101 atttcCCAAT attaacacac atcattttac aatttgctct ctctctctct 151 ctctctcttt gtctctctgt ctttaagaaa cctttcttca ttgtttcctc 201 CTCTTCCTCA ATCTCTAGAG AAGAAGATGA AGACGTCAAG CTTTGTCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00153 Mean Expected Number 0.002 +strand -112 : -103 CCACaTGGCC AC RSP00727 Mean Expected Number 0.007 -strand +41 : +35 GCTTGAC AC RSP00864 Mean Expected Number 0.000 +strand -182 : -174 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -43 : -51 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -45 : -53 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -47 : -55 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -49 : -57 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -51 : -59 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -53 : -61 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -55 : -63 AGAGAGAGA AC RSP00943 Mean Expected Number 0.010 +strand -79 : -69 TCATTTtACAA AC RSP01019 Mean Expected Number 0.008 +strand +27 : +33 ATGAAGA AC RSP01236 Mean Expected Number 0.008 -strand -161 : -170 TCATAGTtAT AC RSP01283 Mean Expected Number 0.000 -strand -44 : -60 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -46 : -62 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -48 : -64 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -50 : -66 GAGAGAGAGAGAGAGcA AC RSP01596 Mean Expected Number 0.010 -strand -69 : -79 TTGTaAAATGA AC RSP01640 Mean Expected Number 0.009 +strand -44 : -35 CTtTGTCTCT Totally 19 motifs of 9 different REs have been found Description of REs found 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: legume lectin family protein, contains Pfam domain |LOCUS: AT5G01090 |PROD: the same as GENE |32831..34325 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +223 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.22 T - 0.27 C - 0.12 1 gattagtaaa attcttcatc attacagtat taacaattga atagattttt 51 agattatcgc aaatttatag tagaaaagag tgggggcaaa atgtcacaat 101 cgagaacatg ggggatacaa aggagagaag ataaaagaag tgggtataag 151 aacagaaata gcattaattg aatttttatt tcccttactc agcaaccact 201 GAGATTACAA GAGTGTTGTT TGAGAGCGAA TCAAGGTTCC TCCAAAGAAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00152 Mean Expected Number 0.000 -strand -147 : -159 ATCTAAAAATCTA AC RSP00472 Mean Expected Number 0.001 +strand -124 : -113 AgAGTGGGGGCA AC RSP00559 Mean Expected Number 0.005 -strand +9 : -2 TGTAATcTCAG AC RSP00654 Mean Expected Number 0.008 -strand -55 : -64 tACCCACTTC AC RSP00888 Mean Expected Number 0.003 -strand -151 : -159 AAAAATCTA AC RSP01019 Mean Expected Number 0.008 -strand -182 : -188 ATGAAGA AC RSP01136 Mean Expected Number 0.009 +strand -109 : -103 TGTCACA AC RSP01250 Mean Expected Number 0.001 -strand -25 : -34 AAAATTCAAT Totally 8 motifs of 8 different REs have been found Description of REs found 148. Group RE: ATCTA element /AC: RSP00152//OS: Arabidopsis thaliana /GENE: psy/RE: ATCTA element /TF: unknown 450. Group TF: Alfin1 /AC: RSP00472//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS2 /TF: Alfin1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: e-cadherin binding protein-related |LOCUS: AT5G01160 |PROD: the same as GENE |54009..55854 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +270 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.29 C - 0.15 1 gttttttaaa tgcaggcaaa aacttgcaca tctttttgag tttataaagc 51 aacaagccta aaatctggaa tttcctagta cgataagact gaaatataca 101 accattacca aaaaaaatgc atccatatac aaaagtttat aataagatcc 151 agttggtata tagtaattgg gaatgttgaa gacatatgaa gtgttgatca 201 GAAAAAAATA AGACTTGAAG TTAATTAATG GAAACCCTCT TTCTCAGCCA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FtsJ-like methyltransferase family protein |LOCUS: AT5G01230 |PROD: the same as GENE |complement(92600..95685) |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +306 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 1 cactaaatgt tcgtcagaat ttacatggcc gaatgtttgt tttatttgga 51 tacggacatg ttttacttat tggtctcgaa aattccatta ataaatactt 101 gggcctaata tgtgacccaa aagaacttgg tctcaagcCC AATaactcta 151 tttcgtcatc ttccaaattg ttagggcaca gatcaaaaga aaaataagaa 201 GAATCGGTTT TTGTTCTCTC ACACAGTCTT CTTCACTTGG CTCTACCTTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.004 -strand +41 : +32 GCCAAGTGaA Totally 1 motifs of 1 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01350 |PROD: the same as GENE |complement(145635..147199) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +289 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.24 T - 0.26 C - 0.16 1 ccgtctctgg cctatttgta aatagaggga gaaacaaggg taaaatagga 51 attccagaac taagagtttt taggttaatg ttgactagtg ggtaatatga 101 accgttcgat tttgttacag aacatcgtga ccgtccgatg agagacctaa 151 gacaaattac gcaaaaactc attcgccgtc acgaggaaga tgcgaggtct 201 ATATAATGGA CAAATCTGGT ATAATGTAAA ATAGGGACTT GACGCAGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00949 Mean Expected Number 0.005 -strand -114 : -121 TAGTCAAC Totally 1 motifs of 1 different REs have been found Description of REs found 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01590 |PROD: the same as GENE |224173..226923 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.22 T - 0.33 C - 0.20 1 cgttgatgct ttattattgt ttaaaggcat cttgggcgtt ttggcgttga 51 aacaattgtt gcggcgttgt ttgatttaac tgaaaacggc acgtagttag 101 ttttcggaat atcaaaacga catgatgttt aatcgctggg ttgggtcagt 151 cacacttcgt cttccacatc taatccacct gagcttactg agtcggaaca 201 ACATCAGCCA ATAAAGCCCT GAACCCTAAT TTTCTTTTGG CTTTGGCTGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.007 -strand -158 : -165 CAAAACGC AC RSP01303 Mean Expected Number 0.002 +strand +20 : +29 TgAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand +20 : +29 TGAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATFER1 |LOCUS: AT5G01600 |PROD: ferritin 1 (FER1) |complement(227958..230048) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +457 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.41 C - 0.16 1 agagagccac gaatttttcc ttctttgttg taaattatga atattaggcc 51 acataatacg gaaagtctta aagggtttgg accattctca atcttatgtt 101 ctagtagctt gatgattttt tataaaaACA ATatggaaat acttttatct 151 ctatccgatt tcctatgtca atatgtgtca caggatttta cacgtctaac 201 TTATGTTGGA AACGCTATCA TCTTTTCTTT TTTTTTTTTT ATAGTAAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01602 Mean Expected Number 0.005 +strand -115 : -108 TCTCAATC AC RSP01718 Mean Expected Number 0.001 +strand -13 : -2 TTACACGTcTAA Totally 2 motifs of 2 different REs have been found Description of REs found 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1526. Group TF: STF1/HY5 /AC: RSP01718//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: G/A-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01610 |PROD: the same as GENE |231042..232198 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.33 C - 0.18 1 tacttttttt tgtaatttgt acagtataat gctgcctgct tgcttcaata 51 aatatattgg tgtttatgta tttgccacat gtcataagtt aattggctgc 101 aggaatagtg cacaaataac gaatccaacg gtgcgagagt ggtgggttcc 151 caaaattctt tcccggaaga aaaagaaaga aagtcgtcct tcgttttctc 201 AAAATCTTCT CTATCCTTTC TCGAGAGAAT ATGGATCAGA TCTTCAACAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -127 : -118 GCCACaTGTC AC RSP00219 Mean Expected Number 0.000 -strand -117 : -128 TGACAtGTGGCA AC RSP00460 Mean Expected Number 0.005 +strand -125 : -116 cACATGTCAT AC RSP00653 Mean Expected Number 0.002 +strand +7 : +17 TTCTCTaTCCT AC RSP00860 Mean Expected Number 0.002 +strand -27 : -19 AGAAAGAAA AC RSP00936 Mean Expected Number 0.000 +strand -128 : -117 TGCCACaTGTCA Totally 6 motifs of 6 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G01620 |PROD: the same as GENE |232562..234913 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +317 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.15 T - 0.27 C - 0.13 1 attatgataa gcctaaaata tggaacatta ttactctact tttggcttaa 51 cagcatttat aatagtcaga tttgagaata aatcacactc gcaattgaag 101 cgtgtttgat ctcacatgcc caaaagaatc catccatttt tctttgcaaa 151 aaactgaatt aaaaagaaga aaaaaggaga agtgtgaaat tttttaaaag 201 AAAGAAACAA AAGGATTTAT TAAAAAAAAA AAAAAAGAGA TGAAGACAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.005 -strand +14 : +4 CCTTTTGTtTC AC RSP00301 Mean Expected Number 0.005 -strand -53 : -59 TGCAAAG AC RSP00416 Mean Expected Number 0.008 +strand -70 : -64 CATCCAT AC RSP00445 Mean Expected Number 0.009 +strand +31 : +40 AAAAAAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: F-box family protein (FBL3) |LOCUS: AT5G01720 |PROD: the same as GENE |complement(266720..270480) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +92 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.36 C - 0.26 1 acctttttgc ccctcccgtc cttccccgta cggttctctt tctttatttt 51 atttaccttt taccaaagtt acacttctac ccctattttt cttcaataag 101 agatggaaga gcaagggcaa ttaagtaatt tgACAATatc cttctccttc 151 aagactctct ctctcccaca gaaaacaaac tgtttgttgt taataactgt 201 GGGTTTTTTC CAAAATCCTC AAAGAGAGAC TATACTTCTC TCGGATCCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.001 +strand -83 : -73 CAATTAAGTAA AC RSP00171 Mean Expected Number 0.007 +strand +24 : +29 GAGAGA AC RSP00842 Mean Expected Number 0.002 +strand +40 : +47 CTCGGATC AC RSP00864 Mean Expected Number 0.007 -strand -37 : -45 AGAGAGAGA AC RSP00865 Mean Expected Number 0.005 -strand -35 : -43 GGAGAGAGA AC RSP01174 Mean Expected Number 0.004 +strand -191 : -181 CCcCTCCCGTC Totally 6 motifs of 6 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G01960 |PROD: the same as GENE |370425..373314 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +383 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.30 C - 0.25 1 atggctgggg gctgtagtca cgcatgttat tttagtaggc ttgcattaaa 51 gcccatttag gttataaggc ccataatgta tttaataggc tgcccattta 101 gagaagactg tcgtcgcttc ctttaagtca accaaccctt tggattaaat 151 ccacaatgca attcgtccaa ctaaaaaact ctcaaccgtt gatttgattc 201 ACACACAGAC GAGACAAGAC AATTCCGTCC CCTCTCTCTC TCTCTTTCCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand +45 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +41 : +33 AGAGAGAGA AC RSP00996 Mean Expected Number 0.003 +strand -13 : -4 GTTGATTTGA AC RSP01076 Mean Expected Number 0.004 -strand -175 : -184 CATGCGTGaC AC RSP01470 Mean Expected Number 0.009 +strand -183 : -174 TCAcGCATGT AC RSP01633 Mean Expected Number 0.001 -strand -150 : -160 CTTTAATGCAA AC RSP01641 Mean Expected Number 0.003 -strand +19 : +10 TCTTGTCTCg Totally 8 motifs of 6 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 994. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE III /TF: CpbZIP1; CpbZIP2 (short) 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: prenylated rab acceptor (PRA1) family protein |LOCUS: AT5G02040 |PROD: the same as GENE |400896..402873 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +264 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.30 C - 0.17 1 atatctagag cttgagatcc tccttttaaa acttttagat gattaatcgt 51 tttacaaatc atagtcccag actttcgttc caatctagat cggtttagat 101 gcgttttgtt ttggaattta tacaacgaaa accaaagttt agattaaaag 151 attcgaaaac cggattacat aaaatctggt ccaggacccc tttggttaac 201 GAAAACCAGA CTAAAGGGCA GAAACGTCAT TTGACAAAAA GAAGGATGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.002 -strand -93 : -100 CAAAACGC AC RSP00943 Mean Expected Number 0.005 +strand +27 : +37 TCATTTgACAA AC RSP01596 Mean Expected Number 0.005 -strand +37 : +27 TTGTcAAATGA AC RSP01654 Mean Expected Number 0.006 -strand +31 : +22 AATGACGTTT AC RSP01682 Mean Expected Number 0.000 -strand -158 : -173 ATCATcTAAAAGTTTT Totally 5 motifs of 5 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1500. Group TF: PF1 /AC: RSP01682//OS: Pisum sativum /GENE: FBPase/RE: PF1 BS /TF: PF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: OHP |LOCUS: AT5G02120 |PROD: thylakoid membrane one helix protein (OHP) |419088..419770 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.31 C - 0.12 1 aaatgagttt ataattacat taaatattac cccataattt tttttttgtt 51 ggtgaggcca tgattttgtt ttactgtcag aaaattctag caaaaaaagg 101 aaaaatgtgt tgcaggatat aacacgtggc gaaatatgaa tggatcggag 151 aaagagagca gtgtagccac aagctaaatc ctgaagtgat ttctgaagat 201 AAAGATTGTT CATATCAAGT AGTTTTCGTT AATTCACTCT ACAAAGGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -79 : -71 ACACGTGGC AC RSP00175 Mean Expected Number 0.000 +strand -78 : -71 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -80 : -71 aACACGTGGC AC RSP00524 Mean Expected Number 0.006 +strand -79 : -73 ACACGTG AC RSP00819 Mean Expected Number 0.002 -strand -71 : -80 GCCACGTgTT AC RSP00861 Mean Expected Number 0.004 +strand -52 : -44 AGAAAGAGA AC RSP01033 Mean Expected Number 0.006 -strand -101 : -110 CCTTTTTTTG AC RSP01034 Mean Expected Number 0.003 +strand -77 : -71 ACGTGGC AC RSP01068 Mean Expected Number 0.008 -strand -120 : -128 TCTGACAGT AC RSP01255 Mean Expected Number 0.001 +strand -79 : -72 ACACGTGG Totally 10 motifs of 10 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NDP1 |LOCUS: AT5G02130 |PROD: expressed protein |complement(419655..421972) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.26 C - 0.20 1 aaaaaaaaat tctagaggaa cttttgggtc aatttttggt ttatttggtt 51 atcacaaaac caagccaatt ataccgattt ttccaaacca aactcaaatt 101 ataccgattg aaATTGGcca ctcttagtga cgacggcgag gaagagctcc 151 gccgacgttt actgagtaaa acctttactt ctgagcaaga caagaaaaaa 201 GAAGATATTG AGCGATTATG ATTCGCGCAG CTGCCAAATT CTCCAGAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.003 +strand -146 : -138 CAAAACCAA AC RSP00941 Mean Expected Number 0.009 -strand -88 : -95 TTTCAATC AC RSP01594 Mean Expected Number 0.009 +strand -95 : -88 GATTGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATEXPA9 |LOCUS: AT5G02260 |PROD: expansin, putative (EXP9) |463156..465244 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.20 1 aagtatgcat tctcgtgaat tcggtggaat aaatttatat tagatccacg 51 agggaaaaaa tacggaatta caatatagtt ttttttattt gataattttt 101 attaataaaa gaatacttaa attagaaaaa taattaaaaa aaggcgtaaa 151 gtcatttgaa gcctccataa gtagccttcc tagcttcccc tctccctctc 201 ACATTCCTCT CTTCTCTCTC TCTTTTCCCA AAAACCAAAA CCTTTTTTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.002 -strand +12 : +4 AGAGAGGAA AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +21 : +13 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATNAP9 |LOCUS: AT5G02270 |PROD: ABC transporter family protein |complement(467106..469078) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.25 C - 0.20 1 tcaaaacggc gtcgttatta tatcgatggt ctctactcgc gccacgtcgc 51 ctaattaatt taacgacgtc gtcttttaaa gaactagcgt ctcttaaagc 101 gccacgtgag ctaatgttta aaaaacttca ccaaaaatgg tgtcgtttca 151 ataacttttc ttcaccaact accaaaaacg tctgaagaag aaaaaagtat 201 AAGTAAAGCA GAGAGAAGAG CAAGGGAGAG GTACTAAAAA TGGCGGTGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00065 Mean Expected Number 0.000 -strand -94 : -102 ACGTGGCGC AC RSP00065 Mean Expected Number 0.000 -strand -154 : -162 ACGTGGCGC AC RSP00073 Mean Expected Number 0.002 +strand -160 : -151 GCCACGTcGC AC RSP00073 Mean Expected Number 0.002 -strand -151 : -160 GCgACGTGGC AC RSP00120 Mean Expected Number 0.000 -strand -53 : -66 AAACGACACCaTTT AC RSP00153 Mean Expected Number 0.002 +strand -159 : -150 CCACGTcGCC AC RSP00175 Mean Expected Number 0.001 -strand -93 : -100 CACGTGGC AC RSP00208 Mean Expected Number 0.000 +strand -100 : -89 GCCACGTgAGCT AC RSP00247 Mean Expected Number 0.006 +strand -100 : -91 GCCACGTgAG AC RSP00248 Mean Expected Number 0.003 +strand -100 : -91 GCCACGTgAG AC RSP00640 Mean Expected Number 0.002 -strand -92 : -99 TCACGTGG AC RSP00653 Mean Expected Number 0.005 -strand +17 : +7 TTCTCTCTgCT AC RSP00740 Mean Expected Number 0.000 +strand -100 : -91 GCCACGTGAG AC RSP00986 Mean Expected Number 0.001 +strand -159 : -152 CCACGTCG AC RSP01034 Mean Expected Number 0.007 -strand -94 : -100 ACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -154 : -160 ACGTGGC AC RSP01438 Mean Expected Number 0.000 -strand -104 : -116 TTAAGAGACgCTA Totally 17 motifs of 14 different REs have been found Description of REs found 64. Group TF: EmBP-1 /AC: RSP00065//OS: Triticum aestivum /GENE: Em/RE: Em1a /TF: EmBP-1 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 702. Group TF: G-box binding TF /AC: RSP00740//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 11 /TF: G-box binding TF 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1311. Group RE: 13 bp RE /AC: RSP01438//OS: Agrobacterium rhizogenes /GENE: rolC/RE: 13 bp RE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L36 (RPL36C) |LOCUS: AT5G02450 |PROD: the same as GENE |533119..534635 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +380 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.31 C - 0.19 1 ttttattggg cctcgttgaa agaaacaaaa tttcgtatct aataaggccc 51 aaaaaattga aacaattcct gattaaagcc cagtttataa actatttcgt 101 ttgggcccaA CAATctcaca atggcagggg tagatttgga aatatagaaa 151 gaaggtctca aaaatcacta aaccctaatc tctttatttt ggagaagact 201 ATAAAATCGA TTTTCTCTCA CAAATCTTAT TCTCTTTCGA CTTCAGTGGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -23 : -31 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -31 : -23 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -155 : -23 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.005 +strand -32 : -23 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand -32 : -23 TaAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: histone H2A, putative |LOCUS: AT5G02560 |PROD: the same as GENE |575380..576604 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.29 C - 0.24 1 tttggagtat tgctattaat ccttttaatg tgaacaaaac attgaagcga 51 aggttgccag atcagcaaat catagccgtt gattcacttc caatccaaaa 101 gctaacattc atcaactgac aaaaccaacc aaccaaccaa cttctttcgc 151 tatcttacgc caaagctctc ttaattcctc cgtttgcata ttttccggtc 201 AGATCAAAAT CAGAATCAGA ATCAAATTTC TCGTCGTGTC GGAGTAAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.002 +strand -200 : -193 TTTGGAGT AC RSP00651 Mean Expected Number 0.005 +strand -77 : -67 ACCaACCAACC AC RSP00651 Mean Expected Number 0.005 +strand -73 : -63 ACCaACCAACC AC RSP00716 Mean Expected Number 0.004 +strand -81 : -73 CAAAACCAA Totally 4 motifs of 3 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: chloroplast lumen common family protein |LOCUS: AT5G02590 |PROD: the same as GENE |583084..584177 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.34 C - 0.22 1 ttataaactt aaaacagtca taattaaact caataatctt taaaactatt 51 ttatttaagt gtgtaacaaa ttatacaaag agcccagccc attaagctta 101 caaaacaacc tctaagcCCA ATaaataata cgacgacgtt taattctgta 151 aaaataaaat tttcctcttc ttcttccctt cttctatcta tctcaatctc 201 ATCGCCGGCG TTAGGGTTGT TTTTCTCAAC AATGGTGTCT CTGGCCAAGT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L35 (RPL35D) |LOCUS: AT5G02610 |PROD: the same as GENE |587528..588731 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.19 1 ttttattgac gaatttattc gtattagctt tcactattca caccttttct 51 cttttcggca tacgacgacc caattaaatg ttctttaata aaaagcccat 101 gttttgtgga aataactATT GGgctattac acggcccatt atatttgcca 151 agagaatcac gagggttttc taactcaaat cgatttcaca aaggcatcgt 201 ATAAATTTTC TTCTTCAACA AAATTAGGGT TTGGAGCCAG AAAAGAGCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand +24 : +32 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +32 : +24 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 -strand +33 : +24 cAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted proteins |LOCUS: AT5G02640 |PROD: the same as GENE |complement(594177..594865) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.32 C - 0.20 1 aaatatttaa atgtgtctgg gtgacgcgcc cctgctcgtt aattacaagt 51 atcactcttt ttgtgaaagt aattattaac acccctttcc ttaatcattc 101 cacttatctt ttcttcaaat ttaagcttca cttattcctc cacgttatta 151 aaccttaaaa taaaaaatcc atatatatta gacatatacg atagagaatc 201 ACCGAAGGGA AAAAAGTAAT ATCACAAATC AAAAACTAAA CATTGAGAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.004 -strand -178 : -183 CACCCA AC RSP00501 Mean Expected Number 0.002 -strand -163 : -169 CGAGCAG AC RSP01275 Mean Expected Number 0.003 +strand -62 : -53 TCCACGTtAT AC RSP01559 Mean Expected Number 0.008 +strand -177 : -172 ACGCGC AC RSP01734 Mean Expected Number 0.008 +strand -62 : -56 TCCACGT Totally 5 motifs of 5 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G02710 |PROD: the same as GENE |612606..614418 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.30 C - 0.18 1 tgaagaatca atatatgaga gccaatgcta tgtaccaaca ataaaaagtg 51 gatcttgttg ttgtataaag aatggtttgc gactgaaccg gataaaaaaa 101 atggtttgcg actgaaccgg atgcaaattc ACAATttgcg gttgaaccgg 151 ctttcgccat ttgggttcta atcttatctt gacaacattt cttgcttctc 201 TAATTTGCGC CAAAAGAAAA ATGGATATGT CGCTTGCGTT ATCGACGGCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.002 -strand -21 : -29 AAGATAAGA AC RSP00879 Mean Expected Number 0.009 -strand -45 : -51 CGAAAGC AC RSP01687 Mean Expected Number 0.009 +strand -53 : -47 CGGCTTT Totally 3 motifs of 3 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G02740 |PROD: the same as GENE |616441..618595 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.19 T - 0.41 C - 0.17 1 tcaattcttg aaacattttt ttcttccttt aatggtcaag ttttttccgt 51 tactccttct aatgactaat gtaatatgga ccgtattgat gttcgacgtt 101 atgggctttg gcctttttta attattatgt gggcttttga attattttag 151 aatgtgaaac gctgtcgttt atgtagcgaa tgtgggtgta atttcgaatc 201 TTCTTCACCG TGTTCGTCAT CGTCACCACT GAGACTCTCT GTAGAGAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.002 -strand -117 : -124 ACGGTCCA AC RSP00120 Mean Expected Number 0.000 -strand -31 : -44 AAACGACAgCGTTT Totally 2 motifs of 2 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: In2-1 protein, putative, similar to In2-1 |LOCUS: AT5G02790 |PROD: the same as GENE |632827..635088 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.19 1 cattcatcaa agagagagac atggtttatt ccggataata caaatgtcaa 51 taataaaatg ggcttaatac cttattgaat accttattga attgtatcaa 101 ttacggccca ttatgagtta tggagttccc gacaaagatc acaaaactgc 151 cacgtgtacg atgatgactg taatttcgag aaacgtaaac gcttccacac 201 AAAAAAAATC CGTAGTTTCT TCTACAGAAT CAGATCTTTG TATCGTCAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -44 : -52 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -45 : -52 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -43 : -52 tACACGTGGC AC RSP00524 Mean Expected Number 0.007 -strand -44 : -50 ACACGTG AC RSP00682 Mean Expected Number 0.001 +strand -52 : -43 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -43 : -52 TACACGTGGC AC RSP00864 Mean Expected Number 0.001 +strand -190 : -182 AGAGAGAGA AC RSP01034 Mean Expected Number 0.005 -strand -46 : -52 ACGTGGC AC RSP01086 Mean Expected Number 0.001 -strand -12 : -21 TTTACGTTTC AC RSP01255 Mean Expected Number 0.001 -strand -44 : -51 ACACGTGG AC RSP01593 Mean Expected Number 0.000 -strand -43 : -54 TACACGTGGCAg AC RSP01640 Mean Expected Number 0.007 -strand -177 : -186 CcATGTCTCT Totally 12 motifs of 12 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: F-box family protein |LOCUS: AT5G02910 |PROD: the same as GENE |677085..679041 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.32 C - 0.22 1 cttcgtaata gtcaaacaaa aatgacatct gttaaaaaga taaaaaaaat 51 gacacctgta acatgtttta aaagttactt tcattcgtta gaaattattt 101 tatcttttac ttcatttttt tttggtcttt attcccagaa aaaaaaaata 151 tttatacaga aagacagcgt ctccgcgacg gttgaaatcc ctagccacca 201 CTCTCTGTCT GATTCTCCCC TCCCCGCCAA AACATGATAA CTGGCGATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.001 +strand -109 : -96 AAATTATTTTATcT AC RSP00838 Mean Expected Number 0.007 -strand -20 : -25 CCGTCG AC RSP00877 Mean Expected Number 0.001 +strand +23 : +31 CCCGCCAAA AC RSP01056 Mean Expected Number 0.004 +strand -130 : -120 AAaGTTACTTT AC RSP01598 Mean Expected Number 0.009 -strand -147 : -154 TGTCATTT AC RSP01598 Mean Expected Number 0.009 -strand -174 : -181 TGTCATTT Totally 6 motifs of 5 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G03030 |PROD: the same as GENE |complement(708341..709701) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +190 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.23 C - 0.19 1 aagattaggt atagtacttt gccttggcgg cgatatgaaa ggaacaaaac 51 tgtataccaa accctccggt agaggaagag gggttttgac cttttcttac 101 aaaaatggtc ggttttgact tacttaaccg acaaatttgt tgaaccgaca 151 aatttgttga accgacagta ttaaatagaa aagaagaagg aagttctctt 201 CAAACCGACC TCCTGCCCAC GCAAAAAAAA AACAAAAAAA AAGCAGCAGC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.005 +strand -111 : -105 CCTTTTC AC RSP00383 Mean Expected Number 0.008 -strand -110 : -116 GGTCAAA AC RSP00741 Mean Expected Number 0.000 -strand -106 : -117 AAAAGGTcAAAA AC RSP00889 Mean Expected Number 0.009 +strand +17 : +23 CCACGCA AC RSP01743 Mean Expected Number 0.000 +strand -118 : -106 GTTTTGACCtTTT Totally 5 motifs of 5 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G03160 |PROD: the same as GENE |750121..753656 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +164 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.28 C - 0.16 1 ccaagaatcg cagttatctt acgtggcaga gtaagagcca gcgtggaata 51 gttagtcata cgtgtttaat tatcattggt tactatttac gaaattgaaa 101 tttacttaaa acaagttcca cgtgggtcat aacgATTGGa tagaacaacg 151 tgttgttata actagttaca cttaaaacat gcaaatcaaa ataaaaaaaa 201 GGCTTCGAAT TCGATCGAAG AACGATAATT CGAAACACAC AAATTTGCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.001 +strand -181 : -174 TACGTGGC AC RSP00069 Mean Expected Number 0.001 -strand -104 : -114 CAATTTCGTAA AC RSP00247 Mean Expected Number 0.002 -strand -174 : -183 GCCACGTAAG AC RSP00248 Mean Expected Number 0.001 -strand -174 : -183 GCCACGTaAG AC RSP00682 Mean Expected Number 0.001 -strand -75 : -84 cCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -83 : -76 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -76 : -83 CCACGTGG AC RSP01034 Mean Expected Number 0.004 +strand -180 : -174 ACGTGGC AC RSP01288 Mean Expected Number 0.004 +strand -143 : -136 ATACGTGT AC RSP01702 Mean Expected Number 0.007 -strand -135 : -144 AACACGTATg AC RSP01726 Mean Expected Number 0.000 +strand -85 : -74 TtCCACGTGGGT AC RSP01734 Mean Expected Number 0.005 +strand -84 : -78 TCCACGT Totally 12 motifs of 11 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FLA11 |LOCUS: AT5G03170 |PROD: fasciclin-like arabinogalactan-protein (FLA11) |complement(752775..753656) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.06 T - 0.30 C - 0.26 1 aaagcaatgt ctctcctctc tctttctcaa ttcaaacaaa ctttattaaa 51 cctaaaagaa acatttccaa tctctaatga cttagttgat agaatctcat 101 ttagttacct agtaataatc ttcacactag taagagaatc ctactcttca 151 ccaaactaca tctctctcta tataacaaac cccaaaacat ctcaacatac 201 ACACACAACA ACTACAACAA TGGCTACTTC AAGAACATTC ATTTTCTCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00712 Mean Expected Number 0.009 -strand -113 : -118 CAACTA AC RSP00861 Mean Expected Number 0.003 -strand -174 : -182 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -32 : -40 AGAGAGAGA AC RSP01016 Mean Expected Number 0.009 +strand -144 : -137 AGAAACAT AC RSP01640 Mean Expected Number 0.004 +strand -196 : -187 CaATGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 678. Group TF: MYB /AC: RSP00712//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYB RS /TF: MYB 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transcriptional co-activator-related |LOCUS: AT5G03220 |PROD: the same as GENE |complement(767488..768856) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +273 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.25 C - 0.22 1 tttttaaatg taaaaacgta agaataacat cattagtggg gtgattaatc 51 acatccaaac agcagaaatc gaattaaact gaaaagccat tgttttaatt 101 aaaccgaaac taaaccaaaa gaaaccagac ttatacgaac cgtccgaaca 151 cgtaaccgaa aatttacgag aaaatcaaaa ctcgtttcgt cattattgac 201 CTCTTGCTCT ACGCCGTCTT CTCCAAAGCA AAATCAAAAG CTTCTTCGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01233 Mean Expected Number 0.006 -strand +8 : +2 AGCAAGA AC RSP01261 Mean Expected Number 0.009 -strand -46 : -53 TTACGTGT AC RSP01636 Mean Expected Number 0.002 +strand +21 : +31 CTCcAAAGCAA AC RSP01638 Mean Expected Number 0.002 +strand +21 : +31 CTCCAAAGCAA Totally 4 motifs of 4 different REs have been found Description of REs found 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G03345 |PROD: the same as GENE |814122..815618 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.31 C - 0.18 1 attagttact taaaaaaaag tttgggttac aaaagattaa taggaatcta 51 ggatatcatc aatctagaac tacgcgccgt tgttagtctc ttcgatatta 101 gacgttgcgc cgttttcact ttgagatttg cgatattata actacatgcc 151 gttttaaact ccactgatcg tcttctattc tagttcgatt ctcgacggag 201 AATACTCGAC GAGAAAATCC AGATCGGGAA TCAACTTAGA GAAGAAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01601 Mean Expected Number 0.007 +strand -87 : -80 TTTCACTT Totally 1 motifs of 1 different REs have been found Description of REs found 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G03390 |PROD: the same as GENE |834987..836750 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +272 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.14 T - 0.44 C - 0.17 1 tgctttttgt tgaactgttg ttgacgattt ttattttttt ttgttacttt 51 agattatgtt atactttttg gaactttctc tctaccgcta atgggtagta 101 ataatgtttt ctagcatttg actgctgttg agttatatga gaacatatag 151 cgctactaaa atgaaagcta atatcacaca ctacataaac gtgttaacca 201 GTTCCCTTTT GTTATCTTTT TCTTCTGTTT CTTCCTAATC TAAACCAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00872 Mean Expected Number 0.004 -strand -21 : -30 TGTGTGAtAT AC RSP00896 Mean Expected Number 0.002 +strand -53 : -46 TAGCGCTA AC RSP00896 Mean Expected Number 0.002 -strand -46 : -53 TAGCGCTA AC RSP01015 Mean Expected Number 0.002 +strand -43 : -34 aAAATGAAAG Totally 4 motifs of 3 different REs have been found Description of REs found 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 827. Group RE: PAL01 /AC: RSP00896//OS: Abutilon mosaic-A virus (Begomovirus) /GENE: Intergenic Region/RE: PAL01 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DPB |LOCUS: AT5G03415 |PROD: DPB-1 transcription factor, putative (DPB) |842499..845411 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +342 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.34 C - 0.17 1 gaagaagacg aagataattt tagtgtttag ccaaaataaa aataaaaaga 51 taattccagt attatattct gattaacaaa agacctaaat ttcactaaag 101 agaattaatc ttttggtaaa ataaaaaaaa agtaaagaaa attatcttct 151 ttaacttttt gttttttttt cacctatgag tcagtttggt ccctctctct 201 CTCTCTCATT GTGGACATCT TTTCACCATC GCACAAATAA CAAGCCTCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -74 : -63 AAAAAGTAAAgA AC RSP00190 Mean Expected Number 0.009 +strand -24 : -18 TGAGTCA AC RSP00530 Mean Expected Number 0.005 +strand -56 : -45 TCTTcTTTAACT AC RSP00864 Mean Expected Number 0.001 -strand +6 : -3 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +4 : -5 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +2 : -7 AGAGAGAGA AC RSP01597 Mean Expected Number 0.000 +strand +11 : +21 GTGGaCATCTT Totally 7 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G03460 |PROD: the same as GENE |864280..865672 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.32 C - 0.20 1 caacaatact aaaagggctt ttatggtatt gcacgtttgt ggagcgtcaa 51 agccacgttg atatcttaac gccgtcaaaa taataatgga tttttcggta 101 tcttctctgg aagaggcacg ttactttatt aacgccgtca aaactctctc 151 gctgatacag agtgtttgct ttcttttgta gatttttaaa gtcataaagc 201 AAAAGCAACG ACGACTTCAG AGAACTACAA TCATAATTTG TGATCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.003 -strand -140 : -149 TCAACGTGgC AC RSP00234 Mean Expected Number 0.003 +strand -184 : -175 GCTTTTATGG AC RSP00332 Mean Expected Number 0.008 +strand -178 : -171 ATGGTATT AC RSP00682 Mean Expected Number 0.001 +strand -149 : -140 GCCACGTtGA AC RSP00888 Mean Expected Number 0.004 -strand -14 : -22 AAAAATCTA AC RSP01034 Mean Expected Number 0.006 -strand -143 : -149 ACGTGGC AC RSP01071 Mean Expected Number 0.010 -strand -162 : -171 CAAACGTgCA Totally 7 motifs of 7 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: Ras-related GTP-binding protein, putative |LOCUS: AT5G03520 |PROD: the same as GENE |883446..885421 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +232 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.36 C - 0.14 1 agttatttat catttttgta gttaaatggt ttgatttacg ttttgttgtg 51 aagaaacaaa aaatctctca ttttccatcc aatttcttgt cggattctag 101 gtgtaaaccg gattagaaac ctcttagttg agaacttaat aagttcatcc 151 cacaatcaaa ttagttgtgg ggtcaattgt aactattgaa agtttcgagg 201 CTAAAAACTA TAAAAACATG AAAATAATAT TTTTCAGCAG CTAATCAACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01017 Mean Expected Number 0.008 +strand -149 : -142 AGAAACAA AC RSP01086 Mean Expected Number 0.009 +strand -166 : -157 TTTACGTTTt Totally 2 motifs of 2 different REs have been found Description of REs found 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: permease, cytosine/purines, uracil, thiamine |LOCUS: AT5G03555 |PROD: the same as GENE |complement(898240..900158) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +6 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.31 C - 0.22 1 aaaaaagaaa gaaatcgaat cttattttaa gttttttccg tattaagtaa 51 aagaaaatga gatgtgatag cgacgaaaca tccactaaac acatggttca 101 tgtccaacca catgtttctt agagaactta aacagaacac caccacacaa 151 tttccatctc acaattcttt ctctttctct cttttctgtg tgagaaagaa 201 GACTCAATGG TCTCCAATTG CTTAAGCCTT AGTCTCCATC TCAATCTCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand -200 : -187 AAaAAAGAAAGAAA AC RSP00593 Mean Expected Number 0.002 +strand -184 : -176 GAATCTTAT AC RSP00860 Mean Expected Number 0.002 +strand -195 : -187 AGAAAGAAA AC RSP00861 Mean Expected Number 0.002 -strand -23 : -31 AGAAAGAGA AC RSP01016 Mean Expected Number 0.006 -strand -82 : -89 AGAAACAT AC RSP01602 Mean Expected Number 0.009 +strand +39 : +46 TCTCAATC Totally 6 motifs of 6 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT5G03610 |PROD: the same as GENE |915514..918484 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.28 C - 0.20 1 tgtatctctt gtcccatgca attgtatagt agtcacactc agacaataaa 51 caaacgtaat taagaaactc taatggtgca aaacaaaatt gaataaactc 101 aaggaataaa gatacaaaag ttgaccagat catagtcgtt tcacatctct 151 aaggcttagt ggcttactat ataaagccgc aaagacattt tagtgagaac 201 ACAAATTCAA TTCCAATTCT CAAAGTGCTC TCTTTTTAAA CCAATCTGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.004 +strand -140 : -129 TAAgAAACTCTA AC RSP00445 Mean Expected Number 0.007 -strand +38 : +29 tAAAAAGAGA AC RSP01219 Mean Expected Number 0.001 -strand -19 : -27 TTGCGGCTT Totally 3 motifs of 3 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1126. Group RE: TT box /AC: RSP01219//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: TT box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G03660 |PROD: the same as GENE |937976..940057 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.29 C - 0.18 1 taatgcttca aacaaataaa tcaaactaaa aaggtatcac aacaactttt 51 gattatgatc ccactaataa tagtattgtt gtaaatctaa aatttcaaag 101 gttttcaaaa agggatcatc ttcataagat accggtttaa tttgatttgg 151 ttgcgatgaa taaatccggt taagacacca gtcacgctcc tttcgcttcc 201 ATTATTAGGA ACAAGAAATC CAACGGTCAT CGTAGAGCGC ATCAGATAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01600 Mean Expected Number 0.009 +strand -108 : -101 TTTCAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: fructose-bisphosphate aldolase, putative |LOCUS: AT5G03690 |PROD: the same as GENE |complement(963147..965049) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.32 C - 0.22 1 gtaacaaaaa tgaccctttt gaaaatagat aaaaaaaaaa ctttttttta 51 taatttcact ggcaaagcga cgatttctac tagtcgttgg agtcacaaag 101 cgACAATttc tatgggccga tcgtaaaatc tctatatttg tcgtcatgtc 151 cgtctacaac gcggcctttt aaaggcccat taatctcaat ttcaaaaatt 201 ACGTAAAATC GTTTCCATTA TTTCTCACAA TCATATCTTC TCCGTCGCCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.006 +strand -64 : -55 tTTGTCGTCA AC RSP00969 Mean Expected Number 0.001 -strand -54 : -63 aTGACGACAA AC RSP01205 Mean Expected Number 0.008 +strand -36 : -27 CCTTTTaAAG Totally 3 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G03880 |PROD: the same as GENE |complement(1038507..1041479) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.17 T - 0.25 C - 0.18 1 atccgtttac tgagtaaaaa atctctgaaa gcttaaggcc caaaattaag 51 gcccattata tgttaccgtt tcacaacgct catatttttt cactccaaca 101 agtcaagagc aaaatATTGG aaacctaaat tatgactctt aaggcccaaa 151 agtaaggccc attaagtgtg atataacgac gttaaaataa atgaattgcc 201 AAAAACAAAT TAGAAGAAGA AAAATCGATG GCGGGGATAC TAGTGAACAA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hesB-like domain-containing protein |LOCUS: AT5G03905 |PROD: the same as GENE |1052579..1054231 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.31 C - 0.18 1 ttcaatgtat tatcttcctc ttcactttct agagaaaatt gatgaattac 51 tcatcatcat taatttgcaa tttaaggacg aaattgattt gaaggggatt 101 aatggggCCA ATttggaaaa tgtataaaaa tagtgggagc aatacagaaa 151 tagatgacgt ggatgctaaa agtagcgtgg tcttcacaac accaatcttt 201 CTTTCGCCTC CCTCCGTCGT CGTCACCAAG GTAGAAAATT TCGTTCCAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.007 -strand -62 : -68 CTCCCAC AC RSP00214 Mean Expected Number 0.002 +strand -46 : -39 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -39 : -46 CCACGTCA AC RSP00847 Mean Expected Number 0.004 -strand -39 : -48 CCACgTCATC AC RSP00913 Mean Expected Number 0.003 +strand -48 : -39 GATGACGTGG AC RSP00915 Mean Expected Number 0.003 +strand -48 : -39 GATGACGTGG AC RSP00916 Mean Expected Number 0.003 +strand -48 : -39 GATGACGTGG AC RSP00997 Mean Expected Number 0.003 +strand -48 : -39 GATGACGTGG AC RSP01275 Mean Expected Number 0.004 -strand -38 : -47 TCCACGTCAT Totally 9 motifs of 9 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G04000 |PROD: the same as GENE |complement(1079102..1079839) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.30 C - 0.20 1 ttccgataca aattaaattc caatattaaa taattagggt tttgaaattt 51 aataattagg cttttaaata ttttaataag attgtcagtt ttgacacgaa 101 gttgaaactg cagggaacac gtgtaactgt aacggctacg aagacgccac 151 gtcacactga gtctccatcc caaaaacttt ccccaaaaca agaaagaaac 201 ATACTTTGTT CTATCTTCTC TCTCACATAG GGTAAGCGAT CTTTAAACAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 -strand -47 : -55 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 -strand -47 : -54 TGACGTGG AC RSP00215 Mean Expected Number 0.002 +strand -54 : -47 CCACGTCA AC RSP00248 Mean Expected Number 0.002 +strand -55 : -46 GCCACGTCAc AC RSP00279 Mean Expected Number 0.001 +strand -167 : -159 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -159 : -167 AAACCCTAA AC RSP00441 Mean Expected Number 0.008 -strand +10 : +1 AACAAAGTaT AC RSP00488 Mean Expected Number 0.002 -strand -58 : -67 CTtCGTAGCC AC RSP00524 Mean Expected Number 0.008 +strand -84 : -78 ACACGTG AC RSP00524 Mean Expected Number 0.007 -strand -77 : -83 ACACGTG AC RSP00817 Mean Expected Number 0.003 -strand -76 : -85 TACACGTGtT AC RSP00860 Mean Expected Number 0.004 +strand -10 : -2 AGAAAGAAA AC RSP01034 Mean Expected Number 0.004 -strand -49 : -55 ACGTGGC AC RSP01106 Mean Expected Number 0.000 +strand -57 : -47 ACGCCACGTCA AC RSP01256 Mean Expected Number 0.002 +strand -84 : -77 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -77 : -84 ACACGTGT AC RSP01280 Mean Expected Number 0.000 -strand -45 : -55 tGTGACGTGGC AC RSP01303 Mean Expected Number 0.002 -strand -158 : -167 aAAACCCTAA Totally 18 motifs of 16 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phosphate translocator-related |LOCUS: AT5G04160 |PROD: the same as GENE |complement(1142783..1144913) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.38 C - 0.17 1 ttaaccaaat ccatatagtt tcacaataca aatatcgatt tgataatatc 51 gtcgttattt aggcaacgat tttgatatta tctacttaat ttaattaaca 101 agcaaataat acgttacaaa tacaagggtt acttagttag acattaatta 151 ataaaagcaa aggcttaact ttatttgttc atctaaaagc tttttgtgtc 201 CTTGCCGTTC CATGCTCCAA GTAAGGACCT GATTTCTCTC GTTTTCTCTT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KH domain-containing protein NOVA, putative |LOCUS: AT5G04430 |PROD: the same as GENE |complement(1250252..1253834) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +310 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.21 T - 0.25 C - 0.12 1 gttttatttc gtagcacatt ttgatgttaa cacattttgt agttgagttg 51 atttgatatt ttaacaaata aaaagtgaga tgattgtgaa agaggaaaaa 101 aaaattaaaa aagaaataga gaggcggTCA ATaaaattaa atttaggaaa 151 aataaaaaat aatagaataa gggaggctag tggatagata gacgaaggac 201 ACCAGAGCCA CCTTCATTCA CTTCACAAAC CGCTCGGCGA CAAAGACGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00943 Mean Expected Number 0.002 +strand +18 : +28 TCAcTTCACAA AC RSP00996 Mean Expected Number 0.004 +strand -154 : -145 GTTGATTTGA AC RSP01058 Mean Expected Number 0.006 +strand -23 : -16 TAGTGGAT AC RSP01596 Mean Expected Number 0.002 -strand +28 : +18 TTGTGAAgTGA Totally 4 motifs of 4 different REs have been found Description of REs found 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G04470 |PROD: the same as GENE |complement(1266692..1267417) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.33 C - 0.14 1 aaatatatgt tttcattatt tttaaaagat tgtaaggaag ctttcactaa 51 tagtaatgga ttaacttggc atgtggctta cttttatcta tcaaatgtaa 101 atgaagagaa gtagcagtag tgtggattta tttctatcat cgcttatctt 151 tctaattata ttaaagataa acacatatac aaccaaaaag gcatgtatgt 201 AAAGACAGAA GCACATATAT ATAAGAAACC CACAAGTCCA CTTCTCTAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.010 +strand -59 : -53 GCTTATC AC RSP00057 Mean Expected Number 0.001 +strand +37 : +46 TCCACtTCTC AC RSP00085 Mean Expected Number 0.009 +strand -52 : -37 TTTCTAATTATAtTAA AC RSP00085 Mean Expected Number 0.009 -strand -37 : -52 TTAaTATAATTAGAAA AC RSP00115 Mean Expected Number 0.010 -strand -64 : -74 ATAGAAATaAA AC RSP00117 Mean Expected Number 0.004 +strand -187 : -175 cATTATTTTTAAA Totally 6 motifs of 5 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phosphatidate cytidylyltransferase family protein |LOCUS: AT5G04490 |PROD: the same as GENE |1279761..1281670 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.28 C - 0.22 1 agtaaaaaac acaattaccc gaataggcca tgctcattgg ccatttccca 51 ccactaggtt agtacaaact gaccaactgt cccaataaag aaagacgaaa 101 ttacaatgtg aggcagattt tttgcattct tctcgaTCAA Tcagaaagtg 151 acacctcata gattacgtct ttttagttct tactaacgaa acacccaaac 201 AAAAAAAGAT AAATTACAAA ATATCATTTT CCTTATCTTA TTGACTTGTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.010 +strand -48 : -39 ACcTCATAGA AC RSP00629 Mean Expected Number 0.008 -strand -79 : -86 AAAAATCT AC RSP00749 Mean Expected Number 0.007 -strand +22 : +11 ATTTTGTAATTt AC RSP01072 Mean Expected Number 0.007 +strand -39 : -30 ATTACGTcTT AC RSP01720 Mean Expected Number 0.000 -strand -29 : -40 AAAGACGTAAtC Totally 5 motifs of 5 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 990. Group TF: PvAlf /AC: RSP01072//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1d /TF: PvAlf ||Identical REs AC: RSP01154 1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ACT domain-containing protein |LOCUS: AT5G04740 |PROD: the same as GENE |complement(1368543..1371481) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.33 C - 0.20 1 attgcatcta cattcgtctc actatgatca cattattcta tagcaatttg 51 caaatattca attagttact tgtagaaacc atataaaata aaaataaaat 101 aaaagcttag tagatgtata ggtggagcat ctcgatagtg acgtcacaca 151 tcacatcagc agattcagca ctccatcatc tttttgttat cactaaacgc 201 CAATTTCTCT CGCCATTTTA TAGATTAAGG TGTTCTCTCT GACTTCGGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01654 Mean Expected Number 0.005 +strand -64 : -55 AGTGACGTCA Totally 1 motifs of 1 different REs have been found Description of REs found 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: myb family transcription factor |LOCUS: AT5G04760 |PROD: the same as GENE |complement(1373531..1374736) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +206 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.30 C - 0.15 1 cgtgttccca ttttattgga aaaacaaagt ggcatttcct tttaaataaa 51 aatttttaaa gataaaaagg gagaaactgt aacaaactgg tagcaaaaaa 101 tcagtaagtc aggtcaggtg ttaaccctaa aattaaaATT GAaaataaaa 151 ctgagagaaa gagagagaca aaagacatcc caattgcaga gaaaccgtgt 201 TGAAGTTGGT CTCTGAGCTG CTTCTTCCTT CCCTTTTTTA TTTTTATTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.008 -strand -145 : -156 AAAATTTTTATT AC RSP00163 Mean Expected Number 0.003 -strand -26 : -36 tCTTTTGTCTC AC RSP00445 Mean Expected Number 0.007 -strand +39 : +30 AAAAAAGgGA AC RSP00861 Mean Expected Number 0.004 +strand -45 : -37 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -41 : -33 AGAGAGAGA AC RSP01303 Mean Expected Number 0.003 +strand -80 : -71 TtAACCCTAA AC RSP01304 Mean Expected Number 0.002 +strand -80 : -71 TtAACCCTAA AC RSP01641 Mean Expected Number 0.009 -strand -28 : -37 TtTTGTCTCT Totally 8 motifs of 8 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S17 (RPS17D) |LOCUS: AT5G04800 |PROD: the same as GENE |1388486..1389866 |SUPPORT | 2 exon(s) |Alternative mRNAs: 4 | -200:+51 from mRNA start|,5"-UTR: +732 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.29 C - 0.25 1 agaccaattc ccacaccagc gttgaaccac gacatctcac catcttcacc 51 atctgcgtac tctctattcc aatacatgtc gctgtgttct ccttcatatt 101 cttgtttact gaATTGGaaa taggcccaac aaaatgcgac gaatgttagg 151 gcccattaat ggaaaaccta tatttatata gataagcaat tagggattgc 201 GTTGCCGCTT AGCTTCGTCT GAAAAAAGGG GGATCAGTTC CGTCGCCGCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.002 +strand -29 : -18 ATTTATATAgAT AC RSP00157 Mean Expected Number 0.002 -strand -18 : -29 ATcTATATAAAT AC RSP00211 Mean Expected Number 0.004 -strand -8 : -18 CTAATTGcTTA AC RSP00439 Mean Expected Number 0.009 +strand -105 : -98 ATATTCTT AC RSP01210 Mean Expected Number 0.007 -strand +28 : +19 CTTTTTTCAG Totally 5 motifs of 4 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 419. Group RE: -624-box /AC: RSP00439//OS: Arabidopsis thaliana /GENE: PR-1/RE: -624-box /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ovate family protein |LOCUS: AT5G04820 |PROD: the same as GENE |1399620..1400785 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.07 T - 0.25 C - 0.26 1 tatcaacttc aatcatcgta atttttatag ttaagacttt agactaaata 51 agtaaaagca cttcaaataa ctaaccagaa aaaaatggaa aattaacaac 101 aaatagaaaa atatcccaaa attaaataga cacatgacct gaccccacca 151 gctctctctt ctctccccat atatcgcatt ccctccaact ccttcctctt 201 CCATTAATTA CTAAACCCAA ACCCAACCAA AGATCTTCAC AAAGAAAAAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G04900 |PROD: the same as GENE |1434816..1437326 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +11 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.20 T - 0.37 C - 0.20 1 tcagtagtca ctatgtaact atagtgtcgt ttttggggca gaacaatagt 51 gtagggttat aaacataaaa tctagaaact ttaggggcta tgatgtattt 101 tgaacaataA TTGGggttat tatcatctta tatgccgcca cgtggcattt 151 aactctctct gagcttgctc gcttacgcaa ctctctctct ctctctcttt 201 GAGCTTCTGT AATGGCTACT TGGAGTGGTT TCAACGTCTC TTCTTCTCCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.006 +strand +31 : +40 TCaACGTCTC AC RSP00063 Mean Expected Number 0.002 +strand -64 : -55 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand -55 : -64 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.002 +strand -64 : -55 GCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -55 : -64 GCCACGTGGC AC RSP00153 Mean Expected Number 0.002 +strand -63 : -54 CCACGTGGCa AC RSP00153 Mean Expected Number 0.002 -strand -56 : -65 CCACGTGGCg AC RSP00175 Mean Expected Number 0.001 +strand -62 : -55 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -57 : -64 CACGTGGC AC RSP00188 Mean Expected Number 0.004 +strand +31 : +40 TCAACGTcTC AC RSP00204 Mean Expected Number 0.002 +strand -64 : -55 GcCACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -55 : -64 GcCACGTGGC AC RSP00682 Mean Expected Number 0.002 +strand -64 : -55 GCCACGTGGc AC RSP00682 Mean Expected Number 0.002 -strand -55 : -64 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -63 : -56 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -56 : -63 CCACGTGG AC RSP00864 Mean Expected Number 0.003 -strand -3 : -11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -5 : -13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -7 : -15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -9 : -17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -11 : -19 AGAGAGAGA AC RSP00999 Mean Expected Number 0.003 +strand -193 : -183 TCACTATgTAA AC RSP01030 Mean Expected Number 0.004 +strand -127 : -120 AGAAACTT AC RSP01034 Mean Expected Number 0.007 +strand -61 : -55 ACGTGGC AC RSP01034 Mean Expected Number 0.007 -strand -58 : -64 ACGTGGC AC RSP01060 Mean Expected Number 0.004 +strand -96 : -88 CAATAATTG AC RSP01060 Mean Expected Number 0.004 -strand -88 : -96 CAATTATTG AC RSP01077 Mean Expected Number 0.001 +strand -96 : -88 CAATAATTG AC RSP01283 Mean Expected Number 0.000 -strand -4 : -20 GAGAGAGAGAGAGAGAg Totally 29 motifs of 16 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ubiquitin-conjugating enzyme, putative |LOCUS: AT5G05080 |PROD: the same as GENE |complement(1498556..1500780) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +807 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.31 C - 0.19 1 aaggttgatg atcataaaca aaatcagtaa aattaaagaa caacacctga 51 tacaagtaac ggctacttta gtagttagcg ggtgaaaaag aagaagacat 101 gctaacggTC AATtccagcc tggcacttaa attacgaaag taccctccaa 151 cttttttctt tatccttttt aaatgatacg ctcctttagt taaataaaat 201 AAACATTTGT CTCTATTTCT CTTATAAAAA TTCAATAATT GAACCTCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00127 Mean Expected Number 0.005 +strand -124 : -119 AGCGGG AC RSP00467 Mean Expected Number 0.002 +strand -95 : -86 cGGTCAATTC AC RSP00881 Mean Expected Number 0.003 -strand -189 : -198 ATCAtCAACC AC RSP01060 Mean Expected Number 0.006 +strand +33 : +41 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand +41 : +33 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand +33 : +41 CAATAATTG AC RSP01250 Mean Expected Number 0.004 +strand +27 : +36 AAAATTCAAT AC RSP01615 Mean Expected Number 0.000 -strand -31 : -46 AAAAAGGATAAAGAaA AC RSP01744 Mean Expected Number 0.000 -strand -87 : -98 AATTGACCGTTa Totally 9 motifs of 8 different REs have been found Description of REs found 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C 1435. Group TF: GmDof11 /AC: RSP01615//OS: Glycine max /GENE: Synthetic OLIGO/RE: L3 /TF: GmDof11 1551. Group TF: WRKY11 /AC: RSP01744//OS: Arabidopsis thaliana /GENE: AtCMPG1 (At3g02840)/RE: WRKY11 BS /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: myb family transcription factor |LOCUS: AT5G05090 |PROD: the same as GENE |1503233..1504495 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +161 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.32 C - 0.19 1 aaaccataag ggtaagaaga agattacctt ggcggcagat tctgaagagg 51 gtaattataa ttgctttttg ggccttgagt ttagttctgg catggattct 101 aaggcccata tggtcctaat catccgagcc gtagtggtcg aatctaaaca 151 gataacaaca attaaaaatt tacaagaatc ttgtcaagtc tctctttcac 201 AAGTCTTTGC CTCAAAATCA ATAATATCTC TCTCTTCATC ATCATTGTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00331 Mean Expected Number 0.007 -strand -102 : -110 GAATCCATG AC RSP00858 Mean Expected Number 0.008 +strand -151 : -144 GGTAATTA AC RSP00864 Mean Expected Number 0.001 -strand +35 : +27 AGAGAGAGA AC RSP01031 Mean Expected Number 0.008 +strand -26 : -19 AGAATCTT AC RSP01458 Mean Expected Number 0.002 +strand -41 : -29 AaTTAAAAATTTA AC RSP01767 Mean Expected Number 0.007 +strand -38 : -30 TAAAAATTT AC RSP01776 Mean Expected Number 0.007 +strand -43 : -33 ACAATTAAAaA Totally 7 motifs of 7 different REs have been found Description of REs found 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cysteine protease inhibitor, putative / cystatin |LOCUS: AT5G05110 |PROD: the same as GENE |complement(1507420..1508868) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.30 C - 0.17 1 agcataagta ccaaacacat attgagaagc agcaccaaac tgatctttga 51 ggttgagaaa agaaaactga tcttttgcat attttttttt caaaggatta 101 acaacATTGA tttaaaatgg gctttcagat gagtccataa aatgggctta 151 aaaatcatat ttaatggccc ataatatttg tttgcttctc ttaaacggaa 201 AGAGTCTTTA ACCGGCGAAA GAAACCACCC TCTGACTGTT AAGAAAATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00961 Mean Expected Number 0.003 -strand -122 : -129 TGCAAAAG AC RSP01006 Mean Expected Number 0.004 +strand +24 : +30 ACCACCC AC RSP01600 Mean Expected Number 0.009 +strand -113 : -106 TTTCAAAG AC RSP01644 Mean Expected Number 0.000 +strand +38 : +50 gTTAAGAAAATTC Totally 4 motifs of 4 different REs have been found Description of REs found 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1464. Group TF: WRAF1; WRAF2 /AC: RSP01644//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np5-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G05180 |PROD: the same as GENE |1536227..1538493 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +698 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.31 C - 0.28 1 aactttgata actggtggtg catgtggaga tgtgtggcca ctagtgcagc 51 aaagaacaga ctgtcagata gacaaaagaa gaaaatggca aacatttgaa 101 tcccaaagag cgccactttc tcttcgctat ccgacaaatc ttccctcctc 151 tttgtcgtcc ctttaaacct ttccaccttc tgcttcgtaa ctctcgtacc 201 CTAGCAATCC TCTACTTAAA CCTTCCTTTG TTTCTCCTTC ACTTTTCCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.007 -strand -177 : -183 CATGCAC AC RSP01017 Mean Expected Number 0.010 -strand +35 : +28 AGAAACAA Totally 2 motifs of 2 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: chalcone-flavanone isomerase family protein |LOCUS: AT5G05270 |PROD: the same as GENE |1563321..1565008 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.34 C - 0.19 1 tcatagcaat tctttcttct atctctttta attattatac ttctatacct 51 tcatttgtta ggtagaatga gtggttgtgg actgagtgct tgatccaaac 101 acgtggcttc ctggtgggtc gctaacaaac aATTGAgatc acaagctttg 151 gtagcaaaaa aattgaattc ataaaaagaa tacgtcgtct tttagatcac 201 AAGCTTTGAA CGTTAGCAAA ATTATGTTAC CTACCACCAG TCCCTGGCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -102 : -94 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -101 : -94 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -103 : -94 aACACGTGGC AC RSP00489 Mean Expected Number 0.009 +strand +28 : +37 TACCTACCAc AC RSP00489 Mean Expected Number 0.008 -strand -137 : -146 TACCTAaCAA AC RSP00524 Mean Expected Number 0.008 +strand -102 : -96 ACACGTG AC RSP00819 Mean Expected Number 0.002 -strand -94 : -103 GCCACGTgTT AC RSP00826 Mean Expected Number 0.000 +strand +26 : +36 GtTACCTACCA AC RSP01034 Mean Expected Number 0.005 +strand -100 : -94 ACGTGGC AC RSP01255 Mean Expected Number 0.001 +strand -102 : -95 ACACGTGG AC RSP01453 Mean Expected Number 0.010 +strand +29 : +35 ACCTACC Totally 11 motifs of 10 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 772. Group TF: R2R3-type MYB /AC: RSP00826//OS: Arabidopsis thaliana /GENE: F3H/RE: MRE-core (AtF3H) /TF: R2R3-type MYB 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: monooxygenase, putative (MO3) |LOCUS: AT5G05320 |PROD: the same as GENE |complement(1575007..1576732) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.37 C - 0.18 1 gtatatacta ctacagtact actatactac tatgggtgct gttcattaat 51 taagttatag aaacagaatt accattatgg gctttttgag cattgggccc 101 atgctttggc tgtaatgggt ttcaaaccac gcgccaaaag tgcgtgtcta 151 ctcttagttc ttacacgata ataaatcttt attattatta ttataaatat 201 AAAGTTTGGA TATTTATTGA ACCGAGTGGT TTCTTTCGTT GACTCGCCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00130 Mean Expected Number 0.000 -strand -6 : -25 tATAATAATAATAATAAAgA AC RSP00876 Mean Expected Number 0.000 +strand -71 : -63 CGCGCCAAA Totally 2 motifs of 2 different REs have been found Description of REs found 128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown 812. Group TF: AtE2F /AC: RSP00876//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 1 E2F (D1) /TF: AtE2F ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: outer membrane OMP85 family protein |LOCUS: AT5G05520 |PROD: the same as GENE |1632846..1635343 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.21 T - 0.27 C - 0.22 1 tttgaaaaaa gagtgcacct tttgattttg aaacgttctg atacagcaag 51 aggctccacg atccctgcgt aaagctaacc ggctaatcgg tcaaccggtt 101 aaccagataa tcagataacc agctaatcac tcagccggtt agccagataa 151 tcagataacc ggttcagtaa ggtattgaca ggaattgtaa aacgcttttt 201 GGAGGAGCCG TCAAATTGAT TTCGCCGATT TGCTCATCTC TGACTCTCAG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: oxidoreductase |LOCUS: AT5G05600 |PROD: the same as GENE |1672121..1674740 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.36 C - 0.22 1 ctcttagtct ttgtcgacac ttagtcattg aaatagttaa aactattaca 51 accaaagatt gcctcaaact caaagtaatg catagtttca catgtcgata 101 caaattttgt tttgtccttt tatcccaaga aaataaaaat taaaTCAATa 151 cttattcaca cgtttcatta aataacaaag acgttgcttt catcgtctct 201 AGCCGATTTC TAGATTCTCC TCCACCACCA TTTTACCCTT CTTTTAAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00819 Mean Expected Number 0.000 -strand -14 : -23 GCaACGTCTT Totally 1 motifs of 1 different REs have been found Description of REs found 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CPD |LOCUS: AT5G05690 |PROD: cytochrome P450 90A1 (CYP90A1) (CYP90) (CPD) |complement(1702689..1706788) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.32 C - 0.18 1 agagatgttt gaaacaaaat ttagaatagt atcgaaaata ttttatcctt 51 atttaaaaaa ttcatatttt atgaagaagt tattattcac tgcttactgt 101 attttagaaa attacttata atttagaaga aaaagaaaag aaaagaagaa 151 gaatgcaaaa gagtataatg atgaaaggtc ctactttatg cagaaacccc 201 CCGTGTGCCC ACTCTCCCCT TCTCCATTAA TACTCTCTCT CCCTCATCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00865 Mean Expected Number 0.000 -strand +42 : +34 GGAGAGAGA AC RSP00961 Mean Expected Number 0.005 +strand -47 : -40 TGCAAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pleckstrin homology (PH) domain-containing protein |LOCUS: AT5G05710 |PROD: the same as GENE |1715876..1716491 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.32 C - 0.13 1 gctctttccg tttggagaag aagacataat cttctttcac atttgacttt 51 ttttttcaat attaaaacat tgttgctgac tgttatgcaa ttggcaaaat 101 gaaggggttg ttatgtaatt ataaatattt taagggaaga aaatgaaaaa 151 taaaaacatt ttggggcaaa agataaacac gaaaaaataa tggaatcgat 201 AAACAGATTT TCGATAGCAT CGGCAGATTT GGATCAAAAC CCTAATTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +45 : +37 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +37 : +45 AAACCCTAA AC RSP01303 Mean Expected Number 0.003 +strand +36 : +45 aAAACCCTAA AC RSP01475 Mean Expected Number 0.001 -strand -37 : -45 CCAAAATGT Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATHMOV34 |LOCUS: AT5G05780 |PROD: 26S proteasome non-ATPase regulatory subunit 7 |1735734..1738493 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.27 C - 0.16 1 gaaaaattac ttcaaaatat ttgataaaat aagaaataaa atcctattta 51 attatccacc gtcttaataa attttcgaga aatgtatatt ggaaaattgc 101 CCAATaaatg acgtgatcag gcccatcata ttgggcttaa caaaagaaaa 151 gcccattata gggaaataaa ataaaacgac catattagaa gcaatttagt 201 GCAAAGTGGT TTTTCCTGGA GAAGAAGCAA ACTCTCAAGC TCCGTCGGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00296 Mean Expected Number 0.000 +strand -69 : -46 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -46 : -69 TGGGCT-- ** bp --AGCCCA AC RSP00838 Mean Expected Number 0.007 +strand +42 : +47 CCGTCG AC RSP01654 Mean Expected Number 0.005 +strand -94 : -85 AATGACGTGA AC RSP01661 Mean Expected Number 0.000 +strand -94 : -83 aATGACGTGATC Totally 5 motifs of 4 different REs have been found Description of REs found 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1479. Group TF: HY5 /AC: RSP01661//OS: Arabidopsis thaliana /GENE: CKX5/6 (At1g75450)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DHS |LOCUS: AT5G05920 |PROD: deoxyhypusine synthase |complement(1777550..1779827) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.29 C - 0.20 1 atttgattga ttaaagtgtt cgagcaataa gagtgattcc accaagcttt 51 gtcagtttgt tgatcaatag aaaaaaaagg agtaaaatcg aacgtaccgg 101 aacgaaccga accatacaaa taccggatct ttaatcgcgc cctaccgtgg 151 aaaatgattc gaatttatta accgagttta gattcggacc aaactcaaac 201 ATTTGTCAGC AAAGATTCGT TTGAAGATAG TTCATCTTTA TTCCTTCCCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00881 Mean Expected Number 0.006 -strand -137 : -146 ATCAACAAaC AC RSP01527 Mean Expected Number 0.001 -strand -138 : -149 TCAACAAACTgA Totally 2 motifs of 2 different REs have been found Description of REs found 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: guanylyl cyclase-related (GC1) |LOCUS: AT5G05930 |PROD: the same as GENE |complement(1779988..1783413) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +753 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.29 C - 0.10 1 tttgcacaaa atcaaaatca gaatcatgtt tggaaacgtg aaaacgttaa 51 agtggtaaac gattttatct tctgaaatct gaacggtgaa atattgatat 101 aaatcacgtt ttcaagtaAT TGAgaacgtg aaaaaatcac gttccaactt 151 atttgaaagg ggttttattg ttgctgctat ttatttggta agaaaactat 201 TGAAGGATGA ATAAGAAGAA GACAAGAATA AGAAGAAGAA GAAGAAAAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00319 Mean Expected Number 0.000 -strand -127 : -135 CAGAAGATA AC RSP01699 Mean Expected Number 0.007 -strand -59 : -65 ACGTGAT AC RSP01699 Mean Expected Number 0.007 -strand -92 : -98 ACGTGAT Totally 3 motifs of 2 different REs have been found Description of REs found 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G05990 |PROD: the same as GENE |complement(1806798..1807908) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.31 C - 0.21 1 taaagacaga agcaaactag ggtttcggat tatggaaacg gtctcttaat 51 gtcgtaatgg gccactaggc ccatattggc ccgtattttt agccggtcct 101 gattttctgt gatttttaat ttaagtcccg ctaaatttgt aatttgctat 151 attaaaccct aaagggaaat aaaaaccctc actcttccaa tttgagcttc 201 AACACAAAAA AAATGGCGAC TCTTGTACGT CGCGCAGCTT CTCGGTTTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.005 -strand +33 : +24 GCgACGTACA AC RSP00052 Mean Expected Number 0.001 +strand +25 : +35 GTACGTcGCGC AC RSP00075 Mean Expected Number 0.003 +strand +25 : +34 GTACGTcGCG AC RSP00279 Mean Expected Number 0.001 -strand -39 : -47 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -47 : -39 AAACCCTAA AC RSP01201 Mean Expected Number 0.003 -strand +1 : -7 TGAAGCTC AC RSP01303 Mean Expected Number 0.003 +strand -48 : -39 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -48 : -39 TaAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 51. Group RE: ABRE /AC: RSP00052//OS: Oryza sativa; /GENE: Rab-16A/RE: ABRE /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: tropinone reductase |LOCUS: AT5G06060 |PROD: the same as GENE |complement(1823845..1825895) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.29 C - 0.21 1 ctttttccat tatgacattg aggtcgtgtc tctccgtgtg taaattcatt 51 tagaccaaac caaaacctaa atttacttat tcgcgtccta tgtgtataat 101 ttcaaggaac atgatgggct ttgagcacat aaacagaccc atcgtaattt 151 taggcccaat ggtaatatct caactggagt tgagccaacc agtttagttc 201 ACTCACACAT CCACAAAAAG AGAGTTAGAG ATTCCAAGGA GGAGAGTGCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.008 -strand +20 : +11 CTTTTTGTGG AC RSP01641 Mean Expected Number 0.005 +strand -177 : -168 TCgTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06180 |PROD: the same as GENE |1873163..1876045 |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +35 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.35 C - 0.21 1 agttagaatc ttaaatttta aaactcttta gaaatcaact tgctaataat 51 cgtaaaaaaa ttagaacgct tgaaatagct gaagaaggtt taattcgttc 101 cgattcccgg ttcaaATTGA ttttcgattt attctgattt caacttcggt 151 ttggtctagc tggtcagtcg tcatcactct cgtcaggaat ccctctcgtc 201 ACTGAACTTT CTTTTCCTTT CAAGTTTCAC CTCTAATGCG ACGAACACAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.004 +strand -173 : -163 tTAGAAATCAA AC RSP01031 Mean Expected Number 0.008 +strand -196 : -189 AGAATCTT Totally 2 motifs of 2 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06190 |PROD: the same as GENE |complement(1876035..1876638) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +243 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.25 T - 0.33 C - 0.18 1 tcccaatttg aaagtgcgaa gaggaaaagg ttgtcgttgt cttaacttaa 51 gcatcatacc catgctcagc ataaacgggt tgtcgttgtc ttaatattgg 101 gtttgggcta ctgcatacgt tgggcttctg gcccaaagtc aactaatctt 151 ggaatgatgt tttttggggc tatataagat gggtagggta cggaacacac 201 AATCTACTTT TGAGTTCTCT GGAGCAGCTT TGGTCTTTTC TCTCTTCAGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01599 Mean Expected Number 0.007 -strand -188 : -195 TTTCAAAT Totally 1 motifs of 1 different REs have been found Description of REs found 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06270 |PROD: the same as GENE |1912551..1913675 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +345 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.37 C - 0.16 1 cctatttaat aagcaatgaa ttggattcct gcaaatatct acagattttc 51 ttgtgtattt attaaaatac atttaagaaa tttaaattac tggtttgaag 101 ttgaaaaaag taattagaat tcgatactct tgaggcaaaa attaaatcaa 151 ttaacgcaat ctgatagtat gtatcgtcta gtagtagtat acttcaattc 201 AATCTTTATG ATTCTCTCTC TCTCACACAG TCCTTTCTCA CTCATAATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +21 : +13 AGAGAGAGA Totally 2 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06280 |PROD: the same as GENE |complement(1917642..1918897) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.09 T - 0.25 C - 0.20 1 caaaaatagt aatcaatcct taaattttgt aatttgccta ctatcttcca 51 ttccaatcat aataattaag aaaatacaaa taaagtaaac gtatctcttt 101 actaattaat acaacacaag atagtgacaa atgtacatat catagagatc 151 aataattgga cctccttcct tactttaaac actcgcaaaa cccaatcagc 201 CACAAACTCA CAAACAAACC AAACAAAAAA AAAGAAGAAG AAAGACTATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.002 +strand -177 : -166 ATTTTGTAATTt AC RSP01060 Mean Expected Number 0.005 +strand -51 : -43 CAATAATTG AC RSP01060 Mean Expected Number 0.005 -strand -43 : -51 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -51 : -43 CAATAATTG Totally 4 motifs of 3 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 2-cys peroxiredoxin, chloroplast, putative |LOCUS: AT5G06290 |PROD: the same as GENE |1919249..1921404 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.34 C - 0.18 1 ggaagatagt aggcaaatta caaaatttaa ggattgatta ctatttttga 51 tgtgaagatt agatggaaat atattcggaa atccaaccag cctaaaaata 101 gattttgatt taattatcaa agtatgatca tcaacacggt gtcgttccgg 151 ttcatcgaac attccacttc tttcttcttg tctgaaaaat ctagaagagc 201 AGCTATTTGG TTTCTCTATC CGATTCGTCT CTCTCACGCC CTCACGTTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.004 -strand -175 : -186 ATTTTGTAATTt AC RSP00888 Mean Expected Number 0.004 +strand -16 : -8 AAAAATCTA Totally 2 motifs of 2 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G06480 |PROD: the same as GENE |complement(1976087..1977291) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.31 C - 0.22 1 taaaaatgag ataattacta caataaataa cattaataag catgtttatc 51 ctaaataaat ttaagtgtat atcacattca taccaaacaa tgaaatcgag 101 ccgtccgttt ccagaaactc tgacctagct aaaagaacgg tccagatctc 151 ttcctacatt ccttgaatat atgaatccaa agattccgca actctactct 201 GCTGCTGCTT TGATCATCAT CTTCCTCTTA TAGCTTCCGA GAGATTTATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00097 Mean Expected Number 0.001 +strand -64 : -57 ACGGTCCA Totally 1 motifs of 1 different REs have been found Description of REs found 95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G06510 |PROD: the same as GENE |1985003..1987045 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +437 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.37 C - 0.21 1 taactagagc aataattctg tctcttttat ttttatgtca cctactacta 51 ctaaagaaaa cattttctaa taaatattat aaaacaaaaa atactcgcat 101 gaaagttgaa ggtgATTGGt tgatgaagct attgttgttt ccattacact 151 tgttcactca tctctttctc tctccttctc tctgcggatc tttgtttcta 201 ATTTGGAACC GACATAGCTC CCAACTAATA GGAATCTCAA GCTTCTCACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.007 -strand -82 : -88 CCAATCA AC RSP00377 Mean Expected Number 0.001 -strand -80 : -89 AACCAATCaC AC RSP00653 Mean Expected Number 0.008 +strand -35 : -25 TTCTCTCTCCT AC RSP00861 Mean Expected Number 0.006 -strand -32 : -40 AGAAAGAGA AC RSP00865 Mean Expected Number 0.002 -strand -26 : -34 GGAGAGAGA Totally 5 motifs of 5 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06660 |PROD: the same as GENE |2046811..2047795 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.40 C - 0.14 1 atgttatgcc gtttattaat taactcagta ttaccattat gagtgggcgt 51 ttttaatcat tgggcccttt tatttctctt acattggttt aaactatgtt 101 cattttgtgg ccttgtgggc ttttattaaa gtttgaccct ttttgttgat 151 atttgacttt cttttgtatg ataaattctc aatcaaatct ctgagctttc 201 AGATATACTC TGATAGAGAA GAAGAAGAAG AAGAAGAGAT CAGCTGAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00713 Mean Expected Number 0.005 +strand +41 : +47 CAGCTGA AC RSP00713 Mean Expected Number 0.007 -strand +46 : +40 CAGCTGA AC RSP01602 Mean Expected Number 0.003 +strand -24 : -17 TCTCAATC Totally 3 motifs of 2 different REs have been found Description of REs found 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06700 |PROD: the same as GENE |2063488..2066040 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.33 C - 0.18 1 ataaaagtgt gattaaagtg agatatatat agataggggc aaaagacagt 51 aattaaaatt cgaatctcga acacaccgac acgcttcttt gaagtggcat 101 tttaagtaaa taactccaaa aacgaggggt attttaattt gaaactcatc 151 actttaagtc atccccttaa caatgtcgtc taaacaaatg gtccgttaac 201 GAAACACCTT TCTCCATTGT TCTTAAAAAG TCATCTTCTT TTTTTTTTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.001 -strand -114 : -123 GAaGCGTGTC AC RSP00405 Mean Expected Number 0.007 -strand -81 : -88 TTTGGAGT Totally 2 motifs of 2 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G06720 |PROD: the same as GENE |complement(2077430..2079006) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +148 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.13 T - 0.34 C - 0.19 1 ctatatataa cttcatttac caaccgcgtg ggaggattac aataatgcaa 51 ttgatggaga tagtataacc taaagacaaa ttacttttaa ctaaacaaaa 101 tgtagaagca ccagctttct tttcccatct tttggactat gtagacaaac 151 acacacgtta atctatagtt attggcttaa tttcaaaatc tttcactttc 201 ATGATCAGTC AAGAAATACG CGTTTAATCG ACTTTTTCTC TCTATATATA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.001 -strand -167 : -173 CTCCCAC AC RSP00749 Mean Expected Number 0.007 -strand -12 : -23 ATTTTGaAATTA AC RSP01237 Mean Expected Number 0.002 +strand +40 : +49 CTCTATATAT AC RSP01733 Mean Expected Number 0.009 +strand -177 : -172 CCGCGT Totally 4 motifs of 4 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G06730 |PROD: the same as GENE |complement(2079956..2081685) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.33 C - 0.18 1 taacgttaat gactaattaa aacacgcact acataaaaat ctagaagcgc 51 catcttttct cactttttga cttggtaaaa caacacgcac cttgactagt 101 aattattagc ttaagttaaa atctgttaca ttcctgatca ggtaagattt 151 attcagcttt tatcctctat ataatgacta attagattaa tcataagttc 201 AGAATCAATC AGTAAAACGA AAAGCTAATC CAAAACTCTT TAATTATTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00459 Mean Expected Number 0.003 +strand -109 : -100 TTGACTAGtA AC RSP01776 Mean Expected Number 0.010 -strand +47 : +37 AtAATTAAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G06750 |PROD: the same as GENE |complement(2086267..2088529) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +283 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.37 C - 0.18 1 ttgtcaaatg cttttaactt tttttaagaa gaaacgcgtt tttagacttc 51 tatttctaaa taaatcgaca aaaacaaaaa tatgatgtaa gatccttggt 101 aatacgtacc aaaaatcacg tcaTCAATtg aatttaattt taatttatag 151 agacaacttt aatttacaca aatcatattt ttcacacttt gcttcaacta 201 CTCTCTCACT CTTGAAGACC AACGAAAGTC TTTTCCTTTT TCTCCAAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00741 Mean Expected Number 0.008 -strand -178 : -189 AAAAaGTTAAAA AC RSP00916 Mean Expected Number 0.003 -strand -76 : -85 GATGACGTGA AC RSP00917 Mean Expected Number 0.003 -strand -76 : -85 GATGACGTGA AC RSP00997 Mean Expected Number 0.004 -strand -76 : -85 GATGACGTGA AC RSP01555 Mean Expected Number 0.000 -strand -74 : -87 TTGATGACGTgATT AC RSP01654 Mean Expected Number 0.005 -strand -76 : -85 GATGACGTGA AC RSP01762 Mean Expected Number 0.009 -strand -102 : -107 CCAAGG Totally 7 motifs of 7 different REs have been found Description of REs found 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1392. Group RE: TGACGT motif 1 /AC: RSP01555//OS: Vigna mungo /GENE: alpha-amylase (Vm)/RE: TGACGT motif 1 /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G06770 |PROD: the same as GENE |complement(2090704..2092951) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.38 C - 0.15 1 acttgcatga gtacaagttt gattccagtc tcatcaaata aactctatta 51 ttgtcaaaac ataaattcat tctaatgtta atgtatatac tttaaattta 101 tagtaatcca tataattaat aatggaatta gtctcctggt cttttggtgt 151 tccacgaatt aatttatatt attaacaaat taagcaaacc tctatccccc 201 ATTTATATTG TTGAGCTGTG TGTGTGGAGA TGATGATGAT GATGATAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00534 Mean Expected Number 0.002 +strand +36 : +48 ATgATGATGATAA AC RSP00790 Mean Expected Number 0.001 -strand -131 : -141 aTGAATTTATG AC RSP01470 Mean Expected Number 0.007 -strand -191 : -200 TCATGCAaGT Totally 3 motifs of 3 different REs have been found Description of REs found 510. Group RE: LRE-TATA O2 /AC: RSP00534//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: LRE-TATA O2 /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G06780 |PROD: the same as GENE |complement(2093928..2097124) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +746 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.33 C - 0.23 1 aacttttatt tattataaat acaagtctta gtttagactt tagagactcc 51 agtagaggtg ccttaaaaaa aacatacatt tcatattttc attaacagtt 101 tgggccaaac aggcctatgt tatcataaaa taggcccaaa atgaaattaa 151 acaaaaacgc atcgtcttgt cttaagctgc ttccgaccaa actaaggttt 201 CTCTCTCCTC CAACTTGGAA CTTCCCGTCT TCGATCTTCT CTTCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00314 Mean Expected Number 0.002 +strand +9 : +19 TCCAACTTGGA AC RSP00314 Mean Expected Number 0.001 -strand +19 : +9 TCCAAgTTGGA AC RSP00509 Mean Expected Number 0.002 +strand -187 : -176 TATAAATACaAG AC RSP00653 Mean Expected Number 0.006 +strand -2 : +9 TTCTCTCTCCT AC RSP00864 Mean Expected Number 0.003 -strand +51 : +43 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +8 : -1 GGAGAGAGA AC RSP01032 Mean Expected Number 0.008 +strand -14 : -5 CCAAACTAAG Totally 7 motifs of 6 different REs have been found Description of REs found 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G06980 |PROD: the same as GENE |2167562..2169392 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +238 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.32 C - 0.22 1 acttttaaga actacaaaaa cgtacaagtt ggccagttgt gtcttgcaag 51 atttaattaa ttttaattca agtgccgacc tcacacagaa aaagatatgt 101 ttaacacgtg gaCCAATgaa agagttgctt tagatggagg agtaatctaa 151 gccacaaatc tcgtttgtga attctaagcc actaactaaa gttcaaactc 201 ACGCGCTCTC CACTTCCTCT CTTCAACTTG CTTCTTTGTC TTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.002 -strand -89 : -98 TCCACGTGTt AC RSP00524 Mean Expected Number 0.009 +strand -97 : -91 ACACGTG AC RSP00653 Mean Expected Number 0.004 +strand +41 : +51 TTCTCTCTCtT AC RSP00863 Mean Expected Number 0.002 -strand +22 : +14 AGAGAGGAA AC RSP00864 Mean Expected Number 0.002 -strand +50 : +42 AGAGAGAGA AC RSP00894 Mean Expected Number 0.007 +strand -136 : -129 AATTCAAG AC RSP01015 Mean Expected Number 0.006 +strand -88 : -79 CcAATGAAAG AC RSP01255 Mean Expected Number 0.001 +strand -97 : -90 ACACGTGG AC RSP01460 Mean Expected Number 0.000 -strand -84 : -94 ATTGGTCCACG AC RSP01465 Mean Expected Number 0.000 -strand -84 : -94 ATTGGTCCACG AC RSP01717 Mean Expected Number 0.000 -strand -88 : -99 GTcCACGTGTTA AC RSP01734 Mean Expected Number 0.006 -strand -89 : -95 TCCACGT Totally 12 motifs of 12 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1330. Group RE: ERSE-II /AC: RSP01460//OS: Glycine max /GENE: BiP9/RE: ERSE-II /TF: unknown 1335. Group RE: ERSE-II /AC: RSP01465//OS: Glycine max /GENE: BiP6/RE: ERSE-II /TF: unknown 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: proline-rich family protein |LOCUS: AT5G07020 |PROD: the same as GENE |complement(2180503..2182387) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.35 C - 0.18 1 tgcactaatc catacaaaat tttccaataa ttggattgaa taaccgaatt 51 ttaaattcgt cattgagaaa acagatcaga aagaaaaccg aattttattc 101 cggtttgatt tgaaattgtt TCAATttggt ttggtataat ttggagttag 151 gaatttgtgg gtttggcagt tacacgcgta ggctagtgga aaagcccacc 201 ACACATAACA CACACACATC TTCTTCCTCT CTTTATCTTC TTCTTCTCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.005 +strand -61 : -54 TTTGGAGT AC RSP00523 Mean Expected Number 0.004 +strand -29 : -23 ACACGCG AC RSP00750 Mean Expected Number 0.004 -strand -171 : -182 TTATTGgAAAAT AC RSP00860 Mean Expected Number 0.002 +strand -123 : -115 AGAAAGAAA AC RSP00863 Mean Expected Number 0.001 -strand +32 : +24 AGAGAGGAA AC RSP01060 Mean Expected Number 0.006 +strand -176 : -168 CAATAATTG AC RSP01060 Mean Expected Number 0.006 -strand -168 : -176 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -176 : -168 CAATAATTG Totally 8 motifs of 7 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G07030 |PROD: the same as GENE |complement(2183361..2185973) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +255 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.35 C - 0.13 1 agtcaaagtt tagaaaggta tatcataaaa aaaactttag agctctgcaa 51 cttgtttgat ctcatataca gtttaagttt gttgaaggtc gaactctcga 101 agggcgggat atacgattta aacatgtggt tgttgtatac tggaaagcgt 151 ttttttaacg gatcatacag ttaattgttt agcataatgt tttagataca 201 TGCTTTAACA ATTTATTGTT CTTATAGACA GTCCAAGGCA AACCTTTGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01501 Mean Expected Number 0.002 +strand -99 : -93 GGGCGGG AC RSP01527 Mean Expected Number 0.002 -strand -116 : -127 TCAACAAACTtA AC RSP01577 Mean Expected Number 0.001 -strand -18 : -27 GCTAAACAAT Totally 3 motifs of 3 different REs have been found Description of REs found 1361. Group RE: GC-box /AC: RSP01501//OS: Triticum aestivum /GENE: H1 (TH315)/RE: GC-box /TF: unknown ||Identical REs AC: RSP01502 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown 1406. Group RE: ICEr2 /Group TF: STK /AC: RSP01577//OS: Solanum tuberosum /GENE: PAT21/RE: ICEr2 /TF: STK ||Identical REs AC: RSP01578 RSP01579 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S4 (RPS4B) |LOCUS: AT5G07090 |PROD: the same as GENE |2202384..2204079 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.30 C - 0.18 1 taaaatcact gtttcatcta aaaactgatt ttagctacaa caaaatataa 51 ggccgaaaaa gaatgcttta gttgggccta aatatttcat gctgtaaaaa 101 tgggcctatc taaataagcC CAATaaattt atgcgagaac aacactaggg 151 ttttagtttt tcttttgata tataatgtaa agggcgccgt taatcgcagc 201 CTCAGTGGAA ACAGAGCAGC TGCAAACATG GTTCGTCTTC TCAATTTCTC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: WRKY26 |LOCUS: AT5G07100 |PROD: WRKY family transcription factor |2204249..2205812 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.31 C - 0.18 1 gagatgagta atagatatta ttttcttggc attaagtaat ctagaagaag 51 acctcaagga ctcctgaaag tgatgtgaat tcagccgcct tacacaaaaa 101 agtcaaacat tttggtgttt tgaatacaca cgcttcacac ttggtcacaa 151 gcttatcttt tataattgct tgcttttcct tggaaacatc ctttccttct 201 ATCCAACTCG TAATTTAATA TAGGAAGAAG AAGAAGAAGA AGAGTACCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 +strand -118 : -112 AGCCGCC AC RSP00438 Mean Expected Number 0.008 -strand -112 : -117 GGCGGC AC RSP00807 Mean Expected Number 0.008 +strand -117 : -112 GCCGCC AC RSP01475 Mean Expected Number 0.001 -strand -86 : -94 CCAAAATGT Totally 4 motifs of 4 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: prenylated rab acceptor (PRA1) family protein |LOCUS: AT5G07110 |PROD: the same as GENE |2206001..2207153 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +121 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.26 C - 0.15 1 ttcactaccg acgataaatc tttattcaac tgtttcaaga tattaaatca 51 aacatacatc acaccaagtg tttgacatga tgatgatgga atggaatgga 101 tggtggcaaa tgatgtgata aacacacaaa ggcatacaca taaatgtata 151 ttactacaaa gagcggaata tttttatgtt tctttaaaaa gaaagaaaga 201 CGCAAAAGCA CATGTGATAG TAGCCGACAG TTTGAAGTAA AGCCAGCAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.002 +strand -34 : -23 AATATTTTTATg AC RSP00135 Mean Expected Number 0.001 +strand -34 : -23 AATATTTTTATg AC RSP00872 Mean Expected Number 0.006 +strand -132 : -123 TGTtTGACAT AC RSP00892 Mean Expected Number 0.009 -strand -155 : -163 TTAATATCT AC RSP01016 Mean Expected Number 0.003 -strand -18 : -25 AGAAACAT Totally 5 motifs of 5 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PMSR3 |LOCUS: AT5G07470 |PROD: peptide methionine sulfoxide reductase (MSR) |complement(2362571..2364375) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.35 C - 0.19 1 attctttgac tacattgaat ttgtatttgt tcgattcgat agcggaaaat 51 tcaaaaaata accgatatcg gtttatattt taggtaattt tatctggttc 101 ggtgtagtaa attcaccgtt tgaccgtatc tatatcacag atgattcact 151 gcgattaaaa gttgtggtta tcactatcta atcgtgatcg ctaccaaaac 201 GCAAACGCTA GTTACCGGAA GACACGTCTT GAGTTTCGCA GCATCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.002 +strand -6 : +2 CAAAACGC AC RSP00819 Mean Expected Number 0.003 +strand +21 : +30 GaCACGTCTT AC RSP00999 Mean Expected Number 0.005 +strand -30 : -20 TCACTATCTAA AC RSP01035 Mean Expected Number 0.008 -strand +27 : +21 ACGTGTC Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GRP19 |LOCUS: AT5G07550 |PROD: glycine-rich protein (GRP19) |complement(2388325..2389238) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.24 C - 0.26 1 atcataacac atattaaaac aaggaaaagg ccaaaaaccg tgacaatcca 51 cagaaaacca aagagagaca atgacgtgac gtaacacata tctccatttt 101 cattcagatc gttttgcatg gagcatgaat gtgtagcgta gcgttcacgt 151 agacttccac tagttcttga taaaacccca cttcttccca ccactaaatc 201 ATAAACCATT CGATCAGACC AAATCCCAGC CGTTTAACTT GATCATCCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.006 -strand -81 : -87 CATGCAA AC RSP00112 Mean Expected Number 0.003 +strand -124 : -117 TGACGTAA AC RSP00280 Mean Expected Number 0.008 +strand -57 : -48 TtCACGTAGA AC RSP00613 Mean Expected Number 0.002 -strand -30 : -37 ATCAAGAA AC RSP01013 Mean Expected Number 0.004 -strand -101 : -110 aAAATGGAGA AC RSP01654 Mean Expected Number 0.004 +strand -131 : -122 AATGACGTGA AC RSP01692 Mean Expected Number 0.004 +strand +9 : +16 TTCGATCA Totally 7 motifs of 7 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G07900 |PROD: the same as GENE |2520170..2521547 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.31 C - 0.20 1 gatgtttgaa tttgatgatc ctccaaaaaa aaaaaatgtc tctcggtttc 51 ttcgaagcga tgccagccca gataagtaaa aatgactctc tgctttgttt 101 aaaaaacaaa acccggTCAA Ttccggtcgg gtcggttcgg gtcaaactag 151 ttattatttc ggatttggtt tatgtactgt gagagtgaga gatttttagt 201 AAGCAATCCC TCTCTAGTAA TGGCGGTCGC AATACCTCAA GCCACTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.005 +strand +41 : +50 GCCACTTcTC AC RSP00467 Mean Expected Number 0.004 +strand -87 : -78 cGGTCAATTC AC RSP01642 Mean Expected Number 0.005 +strand -167 : -158 AAATGTCTCt Totally 3 motifs of 3 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, ferredoxin (2Fe-2S) |LOCUS: AT5G07950 |PROD: the same as GENE |complement(2539921..2542137) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.34 C - 0.17 1 ctttggatct ctctgaagct ccgattggta aatatatatc tgatctactg 51 taattcttct tagagattct attgatctat tatatagaca taattgctaa 101 ttACAATtaa aattaattta aacaagttca gaagtttatg aaaattacaa 151 ttgtaacctt ttcgtatttc ttcataaagc cctaagctgg gtggaaatag 201 AAAACAAACT ATCGCCGGCC GTTCAATTCC CGGCGACGTA ACAGAGTTTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.010 +strand -4 : +7 ATAGAAAaCAA AC RSP00680 Mean Expected Number 0.008 +strand +39 : +48 TAACAGAGTt AC RSP00741 Mean Expected Number 0.004 -strand -39 : -50 AAAAGGTTAcAA AC RSP01054 Mean Expected Number 0.003 -strand -41 : -51 AAgGTTACAAT AC RSP01201 Mean Expected Number 0.002 +strand -187 : -180 TGAAGCTC Totally 5 motifs of 5 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glycosyl hydrolase family protein 17 |LOCUS: AT5G08000 |PROD: the same as GENE |2563610..2565492 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.29 C - 0.20 1 ttaagcatca gaaagtatgt tttaattttt aaatttgaaa aaggtgtact 51 tacaagttcg ggtgttcaca cggaggagag ctacaataat gaaaaagctg 101 actcaagaag ggctatagaa gaaacaagag tcacggaaca agttgtcact 151 ctcaatctcc agtacactag cttccataac tctctctctt tcttctctct 201 CTAAAAGTTA TCAGAATAGA AATCTCTCTC TCTCAACAAG TCTAACAGTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.008 -strand -7 : -16 AAgAAAGAGA AC RSP00521 Mean Expected Number 0.003 -strand -136 : -142 ACACCCG AC RSP00861 Mean Expected Number 0.001 -strand -8 : -16 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +31 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +2 : -7 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -12 : -20 AGAGAGAGA AC RSP01458 Mean Expected Number 0.002 -strand -167 : -179 ATTTAAAAATTaA AC RSP01602 Mean Expected Number 0.006 +strand -51 : -44 TCTCAATC Totally 9 motifs of 6 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G08060 |PROD: the same as GENE |2580538..2582565 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.33 C - 0.22 1 actataatgg attcaaattt tgtattgggc ctactttaac aataatctca 51 tcatcacaga atctcaaaat cattgacgac gtgacgtctc tcttctctcc 101 gagtttttgt aaccaaagca gtacactggg aggttattta tcggtttaaa 151 gtattgaacc aatccaatat atgagaccgg tttaataatc cttcgatttc 201 GATTCGAACT TTGGTTTCAT CTCCCCAAAT CGAAGCGAAG GTCTCTCAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.005 -strand -9 : -20 AGgATTATTAAA AC RSP00377 Mean Expected Number 0.005 +strand -44 : -35 AACCAATCCa AC RSP00751 Mean Expected Number 0.002 -strand -54 : -65 AAACCGATAAAt Totally 3 motifs of 3 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATPK3 |LOCUS: AT5G08160 |PROD: serine/threonine protein kinase, putative |complement(2625560..2628111) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.36 C - 0.15 1 ctaaattgtg gattataaac tgattgtctt ttgttggtac gactttttct 51 cgttaatgat tttgttggat atattagcgt tatgtttatt tacccgaacc 101 aattagctaa aacgcaaata aatttaatga attaattaat taagtgacac 151 ggaattgtgt gcctgtatgt attgtatcgt atagctgaca tgaatgcttc 201 AACTCCAAAT CTCTACACTT CCATATAATT AAAACACAGA GAGACGAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.003 -strand +9 : +2 TTTGGAGT AC RSP01209 Mean Expected Number 0.009 +strand -173 : -164 CTTTTGTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G08190 |PROD: the same as GENE |2635907..2637431 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +298 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.27 C - 0.19 1 ggactaaaaa gcggatgatt tgttcaaaac caaaaaaaaa aaaaaaaact 51 tgggctgaaa tgggtcgtgt ctgctgcaag caagcctaca tatgtaatgt 101 tcggtaaaaa gcccatttca tttgtcttaa aaaataacga aattagatct 151 tacgcgccgt caatcacttt aaggcaaaag tgaaagtcac gcacttactt 201 CTGGTCTTAT GTTTTTTTGC CCTAATCGAC TTCTGCGTAG AGAAACCGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.003 +strand -176 : -168 CAAAACCAA AC RSP01015 Mean Expected Number 0.005 -strand -77 : -86 CAAATGAAAt AC RSP01633 Mean Expected Number 0.001 +strand -34 : -24 CTTTAAGGCAA Totally 3 motifs of 3 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1453. Group RE: TERE /AC: RSP01633//OS: Arabidopsis thaliana /GENE: At1g08610/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G08280 |PROD: the same as GENE |complement(2663191..2665793) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +196 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.30 C - 0.22 1 ccttttttct ctcttgccct aattttatat tctcttccca attttgttga 51 cggtgacggc gcgtcgattc cacgcgtgaa ccgcataaag cgtttgggct 101 aagcccttga taatacttac tttccggcCC AATaaaagat aaatcgacga 151 gattgcgaaa cagacggtga ttaaggtagt agaacaccat aatctggtat 201 GAGTCATTCG TAGAGGAATA AAGCTCTAAA ATCTAATTAT CCTATCCAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.003 +strand -200 : -190 CCTTTTtTCTC AC RSP00664 Mean Expected Number 0.001 +strand -2 : +7 ATGAGTCAT AC RSP01209 Mean Expected Number 0.006 -strand -63 : -72 CTTTTATTGG AC RSP01278 Mean Expected Number 0.003 +strand -2 : +7 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 -strand +7 : -2 ATGACTCAT Totally 5 motifs of 4 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: YLS8 |LOCUS: AT5G08290 |PROD: |2665977..2667156 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.23 T - 0.25 C - 0.20 1 tcctctacga atgactcata ccagattatg gtgttctact accttaatca 51 ccgtctgttt cgcaatctcg tcgatttatc ttttattggg ccggaaagta 101 agtattatca agggcttagc ccaaacgctt tatgcggttc acgcgtggaa 151 tcgacgcgcc gtcaccgtca acaaaattgg gaagagaata taaaattagg 201 GCAAGAGAGA AAAAAGGTTG AATCGAAACA GATCGGAAAA TCGTCGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.004 -strand +17 : +7 CCTTTTtTCTC AC RSP00664 Mean Expected Number 0.001 -strand -182 : -190 ATGAGTCAT AC RSP01209 Mean Expected Number 0.003 +strand -121 : -112 CTTTTATTGG AC RSP01278 Mean Expected Number 0.002 +strand -190 : -182 ATGACTCAT AC RSP01278 Mean Expected Number 0.002 -strand -182 : -190 ATGAGTCAT Totally 5 motifs of 4 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: succinyl-CoA ligase (GDP-forming) alpha-chain |LOCUS: AT5G08300 |PROD: the same as GENE |2667471..2669918 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.35 C - 0.16 1 tttattcata atttttctga agagctcaat gtttgagaaa gattccagaa 51 agattttaaa taatttttag ttgacagaat gattgaaata aattctaaaa 101 agtccatcat ctagaaataa atgggtttgg gctaaaATTG Agaaaagtgt 151 agcctttaaa ggaagcctct tttgtcggct tttgatctca gctgattctt 201 CAAAACCGAG CTCCGCTGAA TTTTCTTTGC TCCATTTCCG TCTTCACACA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.008 -strand +31 : +22 AGCAAAGaAA AC RSP00713 Mean Expected Number 0.007 +strand -12 : -6 CAGCTGA AC RSP00713 Mean Expected Number 0.007 -strand -7 : -13 CAGCTGA AC RSP00941 Mean Expected Number 0.009 -strand -113 : -120 TTTCAATC AC RSP01478 Mean Expected Number 0.000 -strand -63 : -77 ATTTtAGCCCAAACC AC RSP01594 Mean Expected Number 0.009 +strand -120 : -113 GATTGAAA AC RSP01621 Mean Expected Number 0.008 -strand -50 : -59 TACACTTTTc AC RSP01643 Mean Expected Number 0.000 -strand +30 : +18 GcAAAGAAAATTC AC RSP01687 Mean Expected Number 0.008 +strand -25 : -19 CGGCTTT Totally 9 motifs of 8 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1346. Group RE: BC-2 /AC: RSP01478//OS: Spinacia oleracea /GENE: RPL21/RE: BC-2 /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1463. Group TF: WRAF1; WRAF2 /AC: RSP01643//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np6a-1) /TF: WRAF1; WRAF2 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G08350 |PROD: the same as GENE |complement(2686246..2687250) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.32 C - 0.25 1 gcttaaagca gccaaacaca atgcttttaa ccataatccc caaaaaagat 51 tcaagttaag atatatataa aagctttatt tcccttttgc tgaattgttg 101 atgacccatt catgactcat cctacggtca agtcacaaaa gattcactat 151 ctttgctttt cattgccctt tatatacctt agcctgcacc aaaccatttc 201 ATCAATCAGC TTCATTTTCC TTATCACACA ACCTCAAGAT TCAAGATCTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00255 Mean Expected Number 0.003 +strand -86 : -78 ACTCATCCT AC RSP00664 Mean Expected Number 0.002 -strand -81 : -89 ATGAGTCAT AC RSP00913 Mean Expected Number 0.007 -strand +3 : -7 GATGAAATGG AC RSP01209 Mean Expected Number 0.008 -strand -153 : -162 CTTTTTTGGG AC RSP01278 Mean Expected Number 0.003 +strand -89 : -81 ATGACTCAT AC RSP01278 Mean Expected Number 0.003 -strand -81 : -89 ATGAGTCAT Totally 6 motifs of 5 different REs have been found Description of REs found 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: lipoic acid synthase family protein |LOCUS: AT5G08415 |PROD: the same as GENE |complement(2710820..2713133) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.34 C - 0.24 1 ctttaagata tccctaataa acatatctta ctgggcttct atatttggcc 51 caatatatta actatcatat ttagcttctt cttcttttgg cgcagtaatt 101 ggtagttggc ggatatccca aagttgctaa ccgaagcaga gtctctccac 151 actctgttga aatcgcctaa tttcattttt tccccagttt tgcctcacac 201 ACAAATATAT ACACACATAC GCAAAAAACT CATGATGCAT CATTGCTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.007 -strand -111 : -120 CCAAAAGAAG AC RSP01209 Mean Expected Number 0.006 +strand -120 : -111 CTTCTTTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G08420 |PROD: the same as GENE |2713414..2716180 |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.25 C - 0.22 1 tgggatatcc gccaactacc aattactgcg ccaaaagaag aagaagctaa 51 atatgatagt taatatattg ggccaaatat agaagcccag taagatatgt 101 ttattaggga tatcttaaag cccaacattA TTGTcactgg gactctagcc 151 caatacaggc atttgtctta aaaacggcga agtctcaagc caacagagat 201 AGGGTTTTCG ATTGTCACCA CCACCACCAC TTCTGGTAAC GCAGTGTCTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: VQ motif-containing protein |LOCUS: AT5G08480 |PROD: the same as GENE |2743621..2745112 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +866 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.08 T - 0.38 C - 0.23 1 ccttctttaa cttcctttct ccattccttc acgacaacaa tgaaataaac 51 tcatcacaaa ttatgtcatt ttgatgtttg accaaacaaa cttagttcta 101 taaacaaaat aatttattat cttttttgtg tgacaaaaac ccaaacccaa 151 aaacggttaa gaacaaaggg ataaaagagt ccttttcctc tttcctctcc 201 ATATTCTTCT CCTGATTTTC CTCTTTTCAT TTTCTTCTCT TTTCTGGTAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00428 Mean Expected Number 0.001 +strand -53 : -42 cAAAAACGGTTA AC RSP00680 Mean Expected Number 0.005 +strand -29 : -20 TAAaAGAGTC AC RSP00862 Mean Expected Number 0.009 -strand -181 : -189 AGAAAGGAA AC RSP00872 Mean Expected Number 0.003 +strand -74 : -65 TGTGTGACAa AC RSP01033 Mean Expected Number 0.001 -strand -45 : -54 CCGTTTTTGG AC RSP01136 Mean Expected Number 0.005 -strand -66 : -72 TGTCACA AC RSP01686 Mean Expected Number 0.008 -strand -69 : -74 CACACA Totally 7 motifs of 7 different REs have been found Description of REs found 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NADH-ubiquinone oxidoreductase 51 kDa subunit |LOCUS: AT5G08530 |PROD: the same as GENE |complement(2759320..2761860) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.30 C - 0.20 1 gtttctaaat gctaattgtt cccaatactt tataattatt tcatattcga 51 cccacatatt ttacgtttat cgaagtttag gatagtttca taccggacca 101 gaatatttgg gcctggacca agagaggccc ataaaataga gagaagctta 151 acgtcaagaa gacgcggagt aatctaaacc aaacagctta tctcgagttc 201 GTCGGTCTCA GGTGGGCAGT GATTATAACT TCGTCTCCGT GTCTGTTCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.006 -strand +43 : +34 GACACGgAGA AC RSP00295 Mean Expected Number 0.000 +strand -93 : -70 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -70 : -93 TGGGCC-- ** bp --GGCCCA AC RSP00709 Mean Expected Number 0.005 +strand -168 : -160 TAATTATTT AC RSP00710 Mean Expected Number 0.001 +strand -168 : -156 TAATTATTTCaTA AC RSP00933 Mean Expected Number 0.001 +strand -172 : -160 TTTATAATTaTTT AC RSP01086 Mean Expected Number 0.007 +strand -141 : -132 TTTACGTTTa AC RSP01150 Mean Expected Number 0.008 -strand +30 : +20 AgTTATAATCA Totally 8 motifs of 7 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: D111/G-patch domain-containing protein |LOCUS: AT5G08535 |PROD: the same as GENE |2762030..2763437 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +426 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.32 C - 0.19 1 aagttataat cactgcccac ctgagaccga cgaactcgag ataagctgtt 51 tggtttagat tactccgcgt cttcttgacg ttaagcttct ctctatttta 101 tgggcctctc ttggtccagg cccaaatatt ctggtccggt atgaaactat 151 cctaaacttc gataaacgta aaatatgtgg gtcgaatatg aaataattat 201 AAAGTATTGG GAACAATTAG CATTTAGAAA CATAAGAGGC GTCTTTTTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00295 Mean Expected Number 0.000 +strand -100 : -77 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -77 : -100 TGGGCC-- ** bp --GGCCCA AC RSP00709 Mean Expected Number 0.006 -strand -2 : -10 TAATTATTT AC RSP00710 Mean Expected Number 0.001 -strand -2 : -14 TAATTATTTCaTA AC RSP00933 Mean Expected Number 0.001 -strand +3 : -10 TTTATAATTaTTT AC RSP01016 Mean Expected Number 0.007 +strand +26 : +33 AGAAACAT AC RSP01086 Mean Expected Number 0.007 -strand -29 : -38 TTTACGTTTa AC RSP01150 Mean Expected Number 0.009 +strand -199 : -189 AgTTATAATCA Totally 8 motifs of 7 different REs have been found Description of REs found 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G08565 |PROD: the same as GENE |2775899..2777400 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.35 C - 0.18 1 tcttgttgcc gaagttatac agataacgta tggaatatga atgggtttgc 51 gattattagt ttattggact ttcaggccct ttttagagaa aattagtttc 101 ctcctcccga aatagtcctg cattatggac cacattatgg gcccatATTG 151 Aggcccacct taatggtact tatatactat tttgtacgga actgattgat 201 AGACATTAGA CACGGAGACA TTGTTGTCGT TCTTCGCAGA CATTTCGATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.004 +strand +9 : +18 GACACGgAGA AC RSP01642 Mean Expected Number 0.005 -strand +45 : +36 AAATGTCTgC AC RSP01642 Mean Expected Number 0.005 -strand +23 : +14 cAATGTCTCC Totally 3 motifs of 2 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FLS |LOCUS: AT5G08640 |PROD: flavonol synthase 1 (FLS1) |2803959..2805448 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.25 C - 0.29 1 acaaaacaac aaatcaaatt aattaaattc ttcatccata aatctatcaa 51 aacttggtac caaactcgtg agtgacgaag cctcgacgac ttacacatat 101 caacacgtac tttatgtggt agttgtctct atccagcggc caagatttcg 151 ccacgtcctc acttcctccc tccttaaaac cactcgtaac accatccccc 201 AAATTACATA TCCGCCATTG TTTCCGGCAA CGCAAACTAC CAAAAAAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.006 -strand -42 : -51 AGgACGTGGC AC RSP00075 Mean Expected Number 0.007 -strand -43 : -52 GgACGTGGCG AC RSP00819 Mean Expected Number 0.003 +strand -51 : -42 GCCACGTCcT AC RSP00821 Mean Expected Number 0.003 +strand -51 : -42 GCCACGTCCT AC RSP00822 Mean Expected Number 0.000 +strand -58 : -34 AGATTTCGCCACGTCCTCACTTCCT AC RSP00829 Mean Expected Number 0.000 -strand -65 : -91 CTGGATAGAGACAACTACCACATAAAG AC RSP01034 Mean Expected Number 0.007 -strand -45 : -51 ACGTGGC AC RSP01702 Mean Expected Number 0.008 +strand -99 : -90 AACACGTAcT Totally 8 motifs of 8 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 768. Group TF: ACE-binding TF /AC: RSP00822//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE (AtFLS) /TF: ACE-binding TF 775. Group TF: R2R3-type MYB /AC: RSP00829//OS: Arabidopsis thaliana /GENE: FLS/RE: MRE (AtFLS) /TF: R2R3-type MYB 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AAP2 |LOCUS: AT5G09220 |PROD: amino acid permease 2 (AAP2) |2866253..2869055 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +615 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.34 C - 0.16 1 aaaggtacgg aggagaaaca agcatttgat tcttccttat tttattttat 51 tcatctctca ctaatgatgg tggagaaaaa aagaaaatac ctaacaaaca 101 aatatatATT GTcatacaaa aatatttcta tatttttagt taattagttt 151 atattcctca cttttcaggg cttatataag aaagtgagca aacacaaatc 201 AAAATGCAGC AGCAAATACT ATCATCACCC ATCTCCTTAG TTCTATTTTA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 2-oxoisovalerate dehydrogenase |LOCUS: AT5G09300 |PROD: the same as GENE |complement(2884181..2886864) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.36 C - 0.18 1 tgtgtgacct cgtgttaaag tgagagtatc ttgtaaccaa ataaaagttt 51 gggtcctgat gaagtcgttt tatatagtgg gccatttaat agtgttgtgg 101 gcttatattt ttacagacga aggccttgtt cgcgattcct taataaaaga 151 ttccacttta tgattaagga atcaaaatct gtacggcact taacaactac 201 ACTTTTCACG TTTCAGTTTT CAACAATCTC TCTCTATCCA TTCTCTATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.007 +strand +22 : +29 AACAATCT AC RSP00864 Mean Expected Number 0.002 -strand +35 : +27 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G09320 |PROD: the same as GENE |complement(2888674..2892017) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.33 C - 0.21 1 aacagatgat gtagatgtag ggcttaaatg ggcttcgttt cgaatcctat 51 ttcgttggcc caatatttta gctttcccac cgcatcatta ttcatcatct 101 cgtgtattaa aaagccgatt tgatctcttt ccactaaaaa ccttgctgac 151 aaagaattca attttgattg tcgtcgatcg tacggtatct tgggggattg 201 ATGGAGAACA CAGACGTCGT CTCGGGTCTG CATAATTTCT TGAGTAAACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00847 Mean Expected Number 0.005 +strand -124 : -115 CCACCgCATC AC RSP01687 Mean Expected Number 0.008 -strand -84 : -90 CGGCTTT Totally 2 motifs of 2 different REs have been found Description of REs found 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CD2-binding protein-related |LOCUS: AT5G09390 |PROD: the same as GENE |2913535..2915924 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.27 C - 0.24 1 ataaattagg gcctgtgcca aaacggcggc gttttagtct aaccatggta 51 aaaaagtaaa ccggtaaatt aaaggaaaca gacatagtaa ttccaaacgt 101 taagcgcgct ttttaaggcc catttttcag cccattaata cggcCCAATt 151 tgtaaacgtc ggcgagaatt catgctttcg tcttatttcc cctcgacggc 201 GATTCTCACC GCCTGGAAAT AAACAAATCG TCGTTGTTCT CGTCTAACGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01640 Mean Expected Number 0.005 -strand -114 : -123 CTATGTCTgT Totally 1 motifs of 1 different REs have been found Description of REs found 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT5G09450 |PROD: the same as GENE |2941813..2943669 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.17 T - 0.34 C - 0.23 1 cccattcaag gcctcacaat aaccaaccca aacattccac gccttatacc 51 aatccccaaa tacttaatgc cttcaacttc gaattgccac atcgttggtg 101 gttgtttatc ttggagctaa tgggctgatt ttcatgggcc cattagatat 151 ttttgctatt ttttcgacac aaaattgttg aaactcgagt ttctcgaagt 201 AAGTGATCGG TTTTTAGATC TTTTTGGTCT CTTCAGTCGG AACTGAAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.004 +strand -154 : -145 tACCAATCCC AC RSP00881 Mean Expected Number 0.008 -strand -92 : -101 ATaAACAACC AC RSP01755 Mean Expected Number 0.001 -strand -97 : -104 CAACCACC Totally 3 motifs of 3 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT5G09480 |PROD: the same as GENE |complement(2950915..2951694) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.33 C - 0.19 1 ggttcgaaag taaacttaaa aggggttata caactaagac gtataatgaa 51 atataggtga gtttgttgaa gactaacatc acattctcac aatcgtgcag 101 tgagatcttc tcaccaaatt tttttgactc ttatgaatct acattctaag 151 atctctctca tctcaatatt atttaagaaa ccattctgta aacaatatat 201 AGCAAAACAC AAACTCTCTA TACTCACAAC ATTGTTTAAC TCATCTTTCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.006 -strand -140 : -145 CTCACC AC RSP00677 Mean Expected Number 0.010 +strand -104 : -99 GCAGTG AC RSP01205 Mean Expected Number 0.005 -strand -177 : -186 CCCTTTTAAG AC RSP01527 Mean Expected Number 0.000 -strand -132 : -143 TCAACAAACTCA Totally 4 motifs of 4 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 646. Group RE: Box 1 /AC: RSP00677//OS: Hordeum vulgare /GENE: Amy32b/RE: Box 1 /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SDH3-1 |LOCUS: AT5G09600 |PROD: |2979154..2980845 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.36 C - 0.18 1 ttccgaagtt tttatcactt gacttgtttg tagcactcac cggagagacc 51 cgctaaagga gccagaggtt tcgataatct cattgtgaaa cgtgcggata 101 actttcgttg gggaatttgt aatttacGCA ATtaacctct aatttatttt 151 aatttttatg aaataattag ggctgattta atcgagatcc catttctttt 201 GTTGGCTTAC TTCTCTCGAA TTTACGCAGG AAGATCATTA GCAGAGAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.002 -strand -105 : -114 CGCACGTtTC AC RSP00698 Mean Expected Number 0.005 +strand -27 : -17 TGAtTTAATCG AC RSP00709 Mean Expected Number 0.004 -strand -32 : -40 TAATTATTT AC RSP00710 Mean Expected Number 0.001 -strand -32 : -44 TAATTATTTCaTA AC RSP00763 Mean Expected Number 0.001 +strand -27 : -17 TGATTTAATCG AC RSP01435 Mean Expected Number 0.003 -strand -87 : -96 TCCCCAACgA Totally 6 motifs of 6 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 664. Group RE: Box III /AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/RE: Box III /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 724. Group RE: Box III /AC: RSP00763//OS: Brassica oleracea /GENE: SLG2/RE: Box III /TF: unknown ||Identical REs AC: RSP00768 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G09630 |PROD: the same as GENE |complement(2985871..2987653) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +476 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.40 C - 0.12 1 taaatataat tactcacaaa aattaaaata actgttatgc gaagaatatg 51 ctgtaattta taagtttttt tttggtaatt ttcgttaaat agatagattt 101 taatcgtaga atttgggaaa aatatctgtt ttttttttcc tagctagata 151 attttgctgg gcgttgaaaa taaaatagtt gttccttgtt tccagaaacc 201 AATCTTAACG ATTTAGATAC TCAGTGATTC GGCTTGGATC ATCTTTGCCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00503 Mean Expected Number 0.001 +strand -61 : -54 CTAGCTAG AC RSP00503 Mean Expected Number 0.001 -strand -54 : -61 CTAGCTAG Totally 2 motifs of 1 different REs have been found Description of REs found 479. Group TF: RITA-1 /AC: RSP00503//OS: Nicotiana tabacum /GENE: Ntltp1/RE: D1 box /TF: RITA-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: inorganic pyrophosphatase family protein |LOCUS: AT5G09650 |PROD: the same as GENE |complement(2991156..2993214) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.32 C - 0.20 1 cgaaaaataa atttggcttc gcccgggttc gaaccggaga ccttcagtgt 51 gttagactga cgtgataacc aactacacca cgaaaccttt gtgcactcta 101 gtccaaattt gaactattta tctattatta ctaaaggttg gtaataccta 151 ctcaacagaa ccccacgtga tctataacat aaaataaatc tttgtttttg 201 TTTTTGTGTT CTGTCTTTCT TGGTGGTGTG ATAAAGAATA AAGAGAGCCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.010 +strand +37 : +46 AAtAAAGAGA AC RSP00640 Mean Expected Number 0.002 -strand -31 : -38 TCACGTGG AC RSP01454 Mean Expected Number 0.009 -strand -59 : -65 ACCAACC Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: histone acetyltransferase, putative |LOCUS: AT5G09740 |PROD: the same as GENE |complement(3021981..3024726) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.29 C - 0.22 1 ttctaatttt atgaataaac tgtgatcccg gtgaaaatgt atgtacttca 51 caccattaaa tatcaatatt tttaacggcc cataaatata ggcccaatta 101 tgtgaaaagt tactaatggg cctgatttat ttcaagtgtc cgtttttctc 151 tctctagttc tcttactcgt atgagaaaga aagcccaccc gggaatctcc 201 GACCCGACCG AGAAATGGGA TCGTCAGCGA ATACAGAAAC CAACGGCAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00135 Mean Expected Number 0.001 +strand -136 : -125 AATATTTTTAaC AC RSP00442 Mean Expected Number 0.007 -strand -89 : -98 TAACTTTtCA AC RSP00860 Mean Expected Number 0.002 +strand -27 : -19 AGAAAGAAA AC RSP00864 Mean Expected Number 0.001 -strand -46 : -54 AGAGAGAGA AC RSP00880 Mean Expected Number 0.006 +strand +41 : +50 CAACGGCAAC Totally 5 motifs of 5 different REs have been found Description of REs found 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L17 family protein |LOCUS: AT5G09770 |PROD: the same as GENE |complement(3035047..3036543) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.28 C - 0.22 1 ccaaaatctg ttggaacttt ttttgaggca gattccaaat tttagtttag 51 aacagaatta gtcaaaaacc ggtttgtagg atatatgggc ccttttgtcc 101 aaaaaaaaga gaggatatat atgggcccaa agcccaaacc cagtaggcgc 151 ttcacagagt tacagtctct cctcctcctt tagggttctt ctctctgttc 201 AGAGATCACT TCTCCGACGC AGAAATGACG AAGTTCAGGA AGCTTGGTCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.009 +strand -98 : -89 AAAAAAGAGA AC RSP01304 Mean Expected Number 0.003 -strand -12 : -21 aGAACCCTAA Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BolA-like family protein |LOCUS: AT5G09830 |PROD: the same as GENE |complement(3057658..3058822) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.24 T - 0.27 C - 0.14 1 gagagctatt tttgctccgg gaaatggaga gactgagagg gttttaggag 51 tgaggaagac gaagtaaagg aaagcagagc ttaaacccta gttattattt 101 tggaattgtc gataaccgaa tggtatcCCA ATtgaaccaa actaaaccgt 151 actctcgcta aaccaaaacc aaatagcgta tggtttaata ttctaattca 201 ATGAGTACAG TAATTAGGGA TTTCAATTTT TGTTTGAGAG AGAGAGAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.001 +strand -37 : -29 CAAAACCAA AC RSP00864 Mean Expected Number 0.004 +strand +37 : +45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand +39 : +47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand +41 : +49 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand +43 : +51 AGAGAGAGA AC RSP00985 Mean Expected Number 0.006 -strand -58 : -67 AGTTtGGTTC Totally 6 motifs of 3 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: protein kinase, putative |LOCUS: AT5G09890 |PROD: the same as GENE |complement(3085546..3089011) |SUPPORT | 12 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +168 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.31 C - 0.17 1 tccaaacctt gcgctgacaa aaagtcagac gataaaaaat tgcttcatca 51 aagattgcaa gttaataata aaaactaaaa ttatgatggc actggcacat 101 gtatagtctt ccatactcta aaaaaaacta ataaaatttg tttATTGTtg 151 ttaattaatg tgattaaatt taatagagag gagacagctt tgccagttca 201 TCTCTGGTAA ATAGTCCACG TTCTGGCGTC TTTGGGATTT CACCAACACC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01734 Mean Expected Number 0.007 +strand +15 : +21 TCCACGT Totally 1 motifs of 1 different REs have been found Description of REs found 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G09960 |PROD: the same as GENE |3106321..3107830 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +183 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.36 C - 0.15 1 cataatatta tattactatt atgccctcga catcatatca tttatttctg 51 gccaacacgg aaaggaaagg ataaaaaagt cgtaaatggc attatcgtga 101 ttattagaca cttcctcgga ctttccgtaa ttatctggta gtatcATTGC 151 tccataaaga aaaaaatgaa ataaaaatga atagtgattg ctgattgggt 201 ATAATTCGAG CTGTTTTTTT GCTGTAATAA TTTCACAATT CTCTTTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 -strand +49 : +40 AAAAAAGAGA AC RSP00943 Mean Expected Number 0.006 +strand +28 : +38 TaATTTCACAA AC RSP01596 Mean Expected Number 0.006 -strand +38 : +28 TTGTGAAATtA Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G09990 |PROD: the same as GENE |3124569..3125073 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.31 C - 0.14 1 tcatgatgcc aatcttagtc gaacaaaaaa aattcgaatt ttaggacata 51 acttatggaa ttgttggttt tcttatagcc tcagctttta acaaagaaag 101 agacggccac tctaaaagat ggtGCAATgt ttttaaaaag agttggttat 151 aattcaccgc tttataatca cagtttaagc atatgattga tcttttggtg 201 ACAAAGAAAA TTTGAGGAGA AAGTCACATA TAGAGGAACT TAGAAGATAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 +strand -106 : -98 AGAAAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G09995 |PROD: the same as GENE |complement(3125039..3126379) |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.32 C - 0.18 1 gtgctacgtg tagtttatag gcttgtagct cacaaacctc caaaccaatg 51 tggtggtgtt ccgattttgc atatgacgca aagaaggtca aattaactca 101 aatgatagta atggggttat ttTCAATagt taacgcataa acagaggact 151 tttcgtgaaa tattgttgtt tctaaacttg acgcaaattt tctcgctgac 201 ACAACTGAAA TCCATTGTTA TCGTCGACTC GAAGCTTAAC AATGGTTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00189 Mean Expected Number 0.003 -strand -189 : -198 TaCACGTAGC AC RSP00440 Mean Expected Number 0.001 +strand -55 : -47 GGACTTTTC AC RSP01017 Mean Expected Number 0.010 -strand -28 : -35 AGAAACAA AC RSP01104 Mean Expected Number 0.002 +strand -167 : -160 AAACCTCC AC RSP01260 Mean Expected Number 0.003 +strand -197 : -190 CTACGTGT Totally 5 motifs of 5 different REs have been found Description of REs found 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G10690 |PROD: the same as GENE |complement(3374394..3377431) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.31 C - 0.18 1 gagagatata gcttaatcta gaagcaattt tggattaggg gaacgaaaag 51 tcaaaactca cgtcaacgtt gaatataagt atattgggct ttaatgttca 101 aagctcaagg cccaaatttg ttaaatctcc acactgtgta acatttgttc 151 gacccgccaa ggtgaagaat aacttgactg attgttgttg ctgtgatttc 201 AGATTCTCTC CAACGTTATC TATTTCGATT AGCTCAAGCC TCAAGGTGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00559 Mean Expected Number 0.005 +strand -9 : +2 TGTgATTTCAG AC RSP00872 Mean Expected Number 0.010 +strand -66 : -57 TGTGTaACAT AC RSP00916 Mean Expected Number 0.002 -strand -134 : -143 GTTGACGTGA AC RSP00917 Mean Expected Number 0.002 -strand -134 : -143 GTTGACGTGA AC RSP00918 Mean Expected Number 0.005 -strand -134 : -143 GTTGACGTGA AC RSP01604 Mean Expected Number 0.005 +strand -68 : -61 ACTGTGTA AC RSP01711 Mean Expected Number 0.007 -strand -180 : -189 CTAGATTAAG Totally 7 motifs of 7 different REs have been found Description of REs found 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G10730 |PROD: the same as GENE |complement(3390615..3393107) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.26 T - 0.28 C - 0.23 1 aaggtgaatt ctactgaaac ggagcgagcc agaccataca tataaggtcc 51 attagaatat aagcccaatt aatttcggcc caatttatag ccaatgatct 101 cgtgttgaag ccacgcgcgg ctctcgtggc ttcccatggg ttcggatact 151 cgggtcaggg tctacgtggc acattggtaa gaggcgacgt gttcacggtc 201 GTAGCGCTCT TTTCGACGTT TTGCTGTGAT TATTTTGGCC GTGAGCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.004 +strand -38 : -31 TACGTGGC AC RSP00051 Mean Expected Number 0.009 -strand -31 : -40 GCCACGTAgA AC RSP00068 Mean Expected Number 0.009 -strand -31 : -40 GcCACGTAGA AC RSP00280 Mean Expected Number 0.008 -strand -31 : -40 gCCACGTAGA AC RSP00682 Mean Expected Number 0.004 -strand -31 : -40 GCCACGTaGA AC RSP01075 Mean Expected Number 0.006 -strand -82 : -91 CgCGCGTGGC AC RSP01259 Mean Expected Number 0.004 +strand -39 : -32 CTACGTGG Totally 7 motifs of 7 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: protein phosphatase 2C-related / PP2C-related |LOCUS: AT5G10740 |PROD: the same as GENE |complement(3393570..3396177) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +328 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.16 T - 0.37 C - 0.23 1 caagctgaaa acaataggcc cattagccca attgccaata attataaagg 51 tacatgtgga cttgtgaagg acccacgtga tactactcca cttgctttac 101 gtgacacgtg tcagcttcgg tacatcctcc aaatttggtt gacttgtgat 151 tctttctact tttttttttt tttttctatt tttagcaaat aaatccattt 201 GTTCGCCGGA ATATGCTCCC TTCTCTTAAC GTCGATCACC TGTTTTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.002 +strand -28 : -13 TTTCTATTTTTAGcAA AC RSP00085 Mean Expected Number 0.002 -strand -13 : -28 TTgCTAAAAATAGAAA AC RSP00143 Mean Expected Number 0.002 +strand -98 : -89 GACaCGTGTC AC RSP00143 Mean Expected Number 0.002 -strand -89 : -98 GACaCGTGTC AC RSP00158 Mean Expected Number 0.003 -strand -10 : -20 TATTTGCTaAA AC RSP00204 Mean Expected Number 0.001 +strand -98 : -89 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -89 : -98 GACACGTGtC AC RSP00219 Mean Expected Number 0.000 +strand -99 : -88 TGACACGTGtCA AC RSP00219 Mean Expected Number 0.000 -strand -88 : -99 TGACACGTGtCA AC RSP00524 Mean Expected Number 0.007 +strand -97 : -91 ACACGTG AC RSP00640 Mean Expected Number 0.002 -strand -121 : -128 TCACGTGG AC RSP00936 Mean Expected Number 0.000 +strand -99 : -88 TGaCACGTGTCA AC RSP00936 Mean Expected Number 0.000 -strand -88 : -99 TGaCACGTGTCA AC RSP01035 Mean Expected Number 0.007 -strand -92 : -98 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -97 : -90 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -90 : -97 ACACGTGT AC RSP01708 Mean Expected Number 0.010 +strand -25 : -16 CTATTTTTAG AC RSP01708 Mean Expected Number 0.010 -strand -16 : -25 CTAAAAATAG Totally 18 motifs of 11 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G10745 |PROD: the same as GENE |3396476..3398064 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.24 T - 0.27 C - 0.22 1 acgtaaagca agtggagtag tatcacgtgg gtccttcaca agtccacatg 51 tacctttata attattggca attgggctaa tgggcctatt gttttcagct 101 tgactggagt agggataagt ctactcctag tgccaaacag cagctaaaaa 151 cttgcaatcg gagaaagagt gtgagctgct gtacacattg atactcccat 201 AGTTACTGCT TCTCGTCGCC GGAGGAAACC CAACGGATCC GTTTTGAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00640 Mean Expected Number 0.003 +strand -178 : -171 TCACGTGG AC RSP00756 Mean Expected Number 0.004 -strand -26 : -33 CTCACACT Totally 2 motifs of 2 different REs have been found Description of REs found 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G11070 |PROD: the same as GENE |complement(3516218..3516996) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.37 C - 0.24 1 tctagcagca ctatcatggt gaaaactata tattatacaa gtagcaatat 51 ttattattac aaaacaaaaa taactttagc aagaaaacgc ggatcaggcc 101 caaaagccca cgcattatcc acggagtttt gtttactctc tcttatcttc 151 ttcttttttg ttttcctatt tattctcacc agacacattc tctttccctc 201 ACTTGTCTTC TTTTTTCCTA ATTCAAGAAA CCATATAATC TTTTCCTCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00839 Mean Expected Number 0.000 +strand -113 : -106 CGCGGATC AC RSP00889 Mean Expected Number 0.006 +strand -93 : -87 CCACGCA AC RSP00894 Mean Expected Number 0.006 +strand +20 : +27 AATTCAAG AC RSP01233 Mean Expected Number 0.004 +strand -123 : -117 AGCAAGA AC RSP01576 Mean Expected Number 0.006 -strand -74 : -79 ACTCCG AC RSP01733 Mean Expected Number 0.004 -strand -109 : -114 CCGCGT Totally 6 motifs of 6 different REs have been found Description of REs found 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1405. Group RE: ICEr2 /AC: RSP01576//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr2 /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G11420 |PROD: the same as GENE |3644599..3647296 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.31 C - 0.23 1 agaaaagaaa ggagtttcca ggaataaccc tctctgatcg atcttctgaa 51 atcttagcta aaccccaaaa gagtgagtca cggccccacg tggatacgtg 101 aatcacatca gtggcataaa tccgtaaATT GTagtaaaat ctagaggtat 151 tttccaagtt agacttccat ataagctatt gctggctcct ctcccaattt 201 CCCATAATTT ACTAAATATC ACTTTCTAGT CTCTTCTCTT TACTTTGGTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.009 -strand -105 : -111 TATCCAC AC RSP00314 Mean Expected Number 0.002 -strand -38 : -48 TCtAACTTGGA AC RSP00682 Mean Expected Number 0.001 +strand -116 : -107 cCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -115 : -108 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -108 : -115 CCACGTGG AC RSP01061 Mean Expected Number 0.000 +strand -128 : -120 GTGAGTCAC AC RSP01274 Mean Expected Number 0.002 -strand -99 : -108 TtCACGTATC AC RSP01734 Mean Expected Number 0.007 -strand -107 : -113 TCCACGT Totally 8 motifs of 7 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 300. Group TF: RSG /AC: RSP00314//OS: Arabidopsis thaliana /GENE: GA3/RE: rbe /TF: RSG 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 981. Group TF: Hahb-4 /AC: RSP01061//OS: Oryza sativa /GENE: GluA-3/RE: GCN4 motif /TF: Hahb-4 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G11500 |PROD: the same as GENE |3676641..3679347 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.32 C - 0.11 1 gaagttgtgc aatttttcaa ggtcaccact cggtcactaa atgaaataaa 51 agttttaggc ctcaaaagta agatatgtat aaataagggg taggtttgga 101 aaaatattat ttataaggcg accgaagaaa aaaaagtcaa cagctttgct 151 ttttttgttt tgttatgttt ttaattgtcg tgagtggtta cgatttcttc 201 AATTTCGTAA ACTTCTAGGG GAGAAACAAG GGAGATAGAG AAGTGAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00069 Mean Expected Number 0.001 +strand -1 : +10 CAATTTCGTAA AC RSP01017 Mean Expected Number 0.010 +strand +22 : +29 AGAAACAA AC RSP01776 Mean Expected Number 0.007 -strand -23 : -33 ACAATTAAAaA Totally 3 motifs of 3 different REs have been found Description of REs found 68. Group RE: Motif j/k /AC: RSP00069//OS: Pisum sativum /GENE: PSPAL2/RE: Motif j/k /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G11580 |PROD: the same as GENE |3718811..3721335 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.33 C - 0.14 1 ttacgaataa agacttgaga gaacaacgac acaataacag atttcttttc 51 aaaatcatgt ttactatttt ttcgttgaat aaaactgttt actaaagact 101 aattatgggt cggataattt attaatgggc ctatttaaac ttataggccc 151 atgtaaataa agtagaaaac aggctacatc ttgagtttgc tgctaagact 201 GAGACTGAAG ATATTTTAAC TTTTTTAAGC ACAGAGTGCT GATGATCGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.004 -strand +25 : +14 AAAAAGTtAAAA AC RSP00295 Mean Expected Number 0.000 +strand -75 : -50 TGGGCC-- ** bp --GGCCCA AC RSP00295 Mean Expected Number 0.000 -strand -50 : -75 TGGGCC-- ** bp --GGCCCA AC RSP00741 Mean Expected Number 0.002 -strand +25 : +14 AAAAaGTTAAAA AC RSP01210 Mean Expected Number 0.001 +strand +20 : +29 CTTTTTTAAG Totally 5 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 286. Group TF: At-TCP20 /AC: RSP00295//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CC", comp) /TF: At-TCP20 ||Identical REs AC: RSP00297 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted proteins |LOCUS: AT5G11680 |PROD: the same as GENE |3758859..3760848 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +605 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.21 T - 0.22 C - 0.15 1 tgtcaaaaaa ataaataaac acctaaaccg aaaccaaagt taaaacaact 51 gaaaatgggc tgaacggtcc ctttaatctg agatgtaata aggcccaaat 101 agtaactgta gatggggACA ATtgtaacga aatcaaattg cgggcgaaaa 151 tcgaactaaa gaaataagta gagggacgaa taaaatggtt agaaggtttt 201 AAGAATAAAC CGCGTCGCGT CTCTTTTCTG GAAAAAACGA GAAACTGTGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.010 +strand -15 : -9 TGGTTAG AC RSP00431 Mean Expected Number 0.007 -strand -88 : -99 ATCtACAGTTAC AC RSP00445 Mean Expected Number 0.001 -strand +29 : +20 AgAAAAGAGA AC RSP01733 Mean Expected Number 0.008 +strand +10 : +15 CCGCGT Totally 4 motifs of 4 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATTIM17-3 |LOCUS: AT5G11690 |PROD: |3761245..3762347 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +515 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.34 C - 0.12 1 gggttggacc ataaaatttg gaatggataa tcggatactt taggttgggt 51 tggtagtttt caatattgaa attgggtttt tggacctttc cttagttttt 101 gatttaaaac aaaATTGTaa aagaaaatga aaatacgaag gtggcattct 151 agctttattt tccagagaaa gtggctttcc agccatttat taaaaaaaac 201 AAAGACCAGG GTGTTTTTTT TCTGACAAAA CAAATTGTAA CACTCACTAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00651 Mean Expected Number 0.003 -strand -143 : -153 AaCTACCAACC Totally 1 motifs of 1 different REs have been found Description of REs found 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT5G11910 |PROD: the same as GENE |complement(3836338..3838214) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.30 C - 0.19 1 ttataacctc aaatcaaaat gatcaagtac taaaaacgaa aaaaaataaa 51 aaacaaattg tgataaaatc ccaagagtca ctttctatat tcgacacatt 101 aatATTGAtt ttcttcctaa tccaaattac gttgaccata tcatacatta 151 attatttact agttggaatt atataatatg aaaaaattcc gagtcacttt 201 AAGCTTTTCG AGGTATCTCC TCCGCGCGAC GATGTCAGAG ACTCGCCGGA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 17.6 kDa class II heat shock protein (HSP17.6-CII) |LOCUS: AT5G12020 |PROD: the same as GENE |complement(3882238..3882939) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.22 C - 0.25 1 gatattaaaa attctgtaaa gttatggctc atattttatc aaacctgagt 51 tacagagttc acaaaaacca gaacgaccaa gacgtttctc gaacaatacg 101 gaagaacttc taaagaccgc gACAATcgct ctctcgacaa tcctctagaa 151 atatccatct ccactcctat ttaagtcccc acatttctca catcaaactc 201 ATCAAAGAAA ACAAAAAGCC AAGAATCAAA GAATCAGGAA AGCAAACACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00442 Mean Expected Number 0.006 -strand -177 : -186 TAACTTTaCA AC RSP00495 Mean Expected Number 0.003 +strand -186 : -179 TGTAAAGT AC RSP00963 Mean Expected Number 0.007 +strand -155 : -149 TGAGTTA AC RSP01004 Mean Expected Number 0.010 -strand -25 : -34 ACTTAAATaG AC RSP01205 Mean Expected Number 0.003 +strand -35 : -26 CCTATTTAAG AC RSP01480 Mean Expected Number 0.005 +strand -169 : -162 TATTTTAT Totally 6 motifs of 6 different REs have been found Description of REs found 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 888. Group RE: GLM2 /AC: RSP00963//OS: Hordeum vulgare /GENE: ITR1/RE: GLM2 /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATCYS1 |LOCUS: AT5G12140 |PROD: cysteine protease inhibitor, putative / cystatin |complement(3922910..3924024) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.35 C - 0.12 1 agtgaggttt gtaaaaagtt gtgtgtattt cctctgtttt tgtttctaca 51 ttttaaatgg ttggccgaca tataaattca gtttattgaa aagaagaagt 101 aaaaaaagat tctctagtta gtgctACAAT gagtcataac cttttattat 151 tccggaagaa ttattcttga agggaaagaa aaaaacgcgc tttaatctct 201 ATATATAACA ATAACACTTT GGGTTTTAGA CTTTAGATAC GAATCAAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 +strand -107 : -96 AAgAAGTAAAAA AC RSP00359 Mean Expected Number 0.005 +strand -137 : -132 GCCGAC AC RSP00530 Mean Expected Number 0.006 -strand -92 : -103 TCTTTTTTtACT AC RSP00664 Mean Expected Number 0.002 +strand -72 : -64 ATGAGTCAT AC RSP01017 Mean Expected Number 0.010 -strand -154 : -161 AGAAACAA AC RSP01031 Mean Expected Number 0.010 -strand -88 : -95 AGAATCTT AC RSP01103 Mean Expected Number 0.007 -strand -191 : -198 AAACCTCA AC RSP01237 Mean Expected Number 0.001 +strand -4 : +6 CTCTATATAT AC RSP01278 Mean Expected Number 0.003 +strand -72 : -64 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 -strand -64 : -72 ATGACTCAT AC RSP01559 Mean Expected Number 0.005 +strand -16 : -11 ACGCGC Totally 11 motifs of 10 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G13090 |PROD: the same as GENE |complement(4153589..4154675) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +105 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.14 T - 0.29 C - 0.13 1 gaaaaaaaca cataaatgtg gtaagtttta tctttatttt tcagtcgtat 51 ccaaagaata cgacgaaaca cacaaaaaaa agtatggaaa gaaaaaagca 101 agaacttaca taaATTGGtt tatagaaaga aaaaataaag gtgggccgta 151 taattggagt ccaaatttct taaataatta ttttatgtct tcacttatct 201 AAAAAATAAA ATAAATAAAT CTTCTCTCCA CTGACATTGG TAAAGGCATA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G13120 |PROD: the same as GENE |complement(4162506..4164787) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.31 C - 0.24 1 tttagtttat gagattagtg tcattttgat acgatgagtt tttctttgtt 51 tgcactttgc acaggtaaat atgcttcata ggatcggctg acctgaccca 101 ctcaaaATTG Actcgatgcg aagccacgta accggcaggg gcataactgt 151 aaataaccat ggaatgtatt tctcagactc tttcgtgcta tcactcgctc 201 ATCGTCACCT TCACCTTCAC CTACCATTTT TGCCAACAAA CGCGAGCAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.003 -strand -71 : -78 TACGTGGC AC RSP00247 Mean Expected Number 0.004 +strand -78 : -69 GCCACGTAAc AC RSP00987 Mean Expected Number 0.008 +strand +18 : +27 CAcCTACCAT AC RSP01034 Mean Expected Number 0.010 -strand -72 : -78 ACGTGGC AC RSP01233 Mean Expected Number 0.010 +strand +45 : +51 AGCAAGA AC RSP01598 Mean Expected Number 0.008 +strand -182 : -175 TGTCATTT Totally 6 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 908. Group RE: H-box-like motif /AC: RSP00987//OS: Antirrhinum majus /GENE: CHS/RE: H-box-like motif /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G13140 |PROD: the same as GENE |complement(4170563..4171797) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.27 C - 0.17 1 gagaaactct tttgagtaaa ggatccaaaa taaatttctt ctacatgatc 51 atttctcact atgtaacacc agaatgagcc aaaaaacgct cttcacatgt 101 ctttgtttgg tagtggaaaa agaattttgg ttaaacagtg tggttggggt 151 caaaaatcaa tcacgggctg aatatattgc aatcacacat acatacacat 201 ACATTATCAT CAAAAAGAAC AATAGAGAGA GCGAGTGAGG ATTAGCCACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.005 -strand +46 : +37 GCTAATCCTC AC RSP00999 Mean Expected Number 0.004 +strand -145 : -135 TCACTATgTAA AC RSP01209 Mean Expected Number 0.002 +strand -100 : -91 CTTTGTTTGG AC RSP01435 Mean Expected Number 0.001 -strand -51 : -60 aCCCCAACCA AC RSP01469 Mean Expected Number 0.006 +strand -108 : -99 TCACATGTcT Totally 5 motifs of 5 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1308. Group TF: RNFG2 /AC: RSP01435//OS: Oryza sativa /GENE: RSs1/RE: BoxII /TF: RNFG2 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G13190 |PROD: the same as GENE |complement(4204820..4206408) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +200 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.28 C - 0.18 1 aaaaacgaac cttgcaattt agacgaaagc tagaacgaac aggtctaaga 51 caattattag gccttttgag cccaatatct gtattaagta tttaagttta 101 taaacaaaag gcccattaag tgtggagtct ctatcttcta gaggaaagaa 151 agaatcaaag aatcgttgaa atcaaaattg cgattaatct caaattaagt 201 ACACACGCGT AATCGTCAGA GATTTGGAAC TTTCCTTGAA TCTCCATCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -133 : -139 CAAAAGG AC RSP00523 Mean Expected Number 0.006 +strand +3 : +9 ACACGCG AC RSP00953 Mean Expected Number 0.005 +strand -150 : -142 CAATTATTA Totally 3 motifs of 3 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AK-LYS1 |LOCUS: AT5G13280 |PROD: aspartate kinase |4249441..4252839 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.27 C - 0.21 1 tttagagctt ttccctttcg agaacaaacg acagagaagc aaaaaactca 51 gactttactg gcttcagtta ttgcaacaag ccaacaacca aaacgggtca 101 aaatcaaaaT CAATggttgg taataaacga cagcgtttta gtacagagac 151 ccgaagagtg gaaggttcaa agtttccttc tttggtgtct ctcatcaaat 201 GAGAGTGAGC CGTACGATTT CTCTCCTCTT CTTGTTTTAA AAACCTATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 +strand -76 : -63 AAACGACAgCGTTT AC RSP01033 Mean Expected Number 0.003 +strand -25 : -16 CCTTCTTTGG AC RSP01218 Mean Expected Number 0.000 -strand -85 : -96 CCATTGATTTTG AC RSP01454 Mean Expected Number 0.006 -strand -80 : -86 ACCAACC Totally 4 motifs of 4 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transaldolase, putative |LOCUS: AT5G13420 |PROD: the same as GENE |complement(4301795..4304315) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.37 C - 0.18 1 gtttattaaa accatctgat gtaaaaaatc acatttatct aaattaaata 51 aatttgttat ctagtatata actatttatt gttttaacat ttggataaat 101 tgtaagaaat tagaatgtaa aataagacag aaaatggtca actatgagca 151 tctatcgcca tcatgatata gtttcgtcgt ttgcgttccc gacctaactc 201 AAAACTTCAC CAACCCCATT TTTAAGCCCC TTTCTTTGTT TTTATCCTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00950 Mean Expected Number 0.001 +strand +6 : +16 tTCACCAACCC AC RSP01134 Mean Expected Number 0.002 +strand -16 : -7 GTTCCcGACC AC RSP01454 Mean Expected Number 0.010 +strand +9 : +15 ACCAACC Totally 3 motifs of 3 different REs have been found Description of REs found 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G13430 |PROD: the same as GENE |complement(4305128..4307516) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.09 T - 0.29 C - 0.16 1 ttacgatttt tatacaaata aaataattta tcttacaaat acacacacac 51 aaaaaaatta tatcgtaaaa ccaaaagatt ttattaatta aaattagaaa 101 aaaaaccatg ccatcaaaat cctgaagtaa aaaaatatca agtaatacgc 151 aaaaaccaaa aaaaacaaaa caaattgacc ttttctcaaa gacaattttt 201 AAGGGACTTA CTAGTAAGTA GTCTCTTATG TTTTGTTTTG CATCGGCCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.007 -strand -172 : -185 AAATTATTTTATtT AC RSP00254 Mean Expected Number 0.007 +strand -22 : -16 CCTTTTC Totally 2 motifs of 2 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: calmodulin-binding family protein |LOCUS: AT5G13460 |PROD: the same as GENE |4315870..4318363 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +456 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.29 C - 0.16 1 aacatttgtt tactaaatgt tgatatgact attcttgaaa cttaactttt 51 acacaaaagt taaaaactaa acaaaattca acaaacaatt tgtggttagc 101 tgcaagatct accagaagtt aggggattaa ggaggatgag aggggtaaaa 151 atataatttc gagtgggcaa tgaagtggca cgttcacctg tcggcacagt 201 GGAGAAGAGA ACAACAAACC TTACTTCTCT CTTGTTCACA TTCATAATTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.005 -strand -148 : -155 TGTAAAAG AC RSP00870 Mean Expected Number 0.010 -strand -148 : -157 TGTAAAAGTt AC RSP00996 Mean Expected Number 0.004 +strand -182 : -173 GTTGATATGA Totally 3 motifs of 3 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L10 family protein |LOCUS: AT5G13510 |PROD: the same as GENE |4341267..4342098 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.33 C - 0.19 1 ttaccaatgg attgcgttca gaattcagaa gcagagacta aaagacacaa 51 tgcgttaaat tagacggagt tactaattcc gtctattaac ccttttttta 101 tccataaatt ttattttcca tttaagaaaa ataaaaaaat aaaATTGCtt 151 agtggaggat tgtgttgttg ttcatctatc ttcttcctcc acacagctag 201 AAACAGTCTC CTCATCTTCT GAGCAAAAAA ATGGAAGTGG CTCTTCTCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.004 +strand -86 : -71 TTTCCATTTAAGaAAA AC RSP00080 Mean Expected Number 0.004 -strand -71 : -86 TTTtCTTAAATGGAAA AC RSP00428 Mean Expected Number 0.002 -strand -103 : -114 AAAAAAgGGTTA Totally 3 motifs of 2 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nodulin MtN21 family protein |LOCUS: AT5G13670 |PROD: the same as GENE |complement(4407147..4409014) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.39 C - 0.20 1 gaaatgttta ccccttaaaa cacgagttta gtgctctttt tctttcctct 51 tttttaggca aatgtcttaa attccttgca cttcaacaca atgcttttta 101 cttctgaaca catgaaaacg ttatgaggct tcaaaactga atctatgtat 151 aaataataca cacgcatata tttaactttg ttttttcttt tcttttccat 201 ATAACAAACC AAACACTACT CTTTTCTAAC CAAGAGAAAG GTTTTATATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01039 Mean Expected Number 0.008 +strand +36 : +41 GAAAGG AC RSP01209 Mean Expected Number 0.006 +strand -152 : -143 CTTTTTTAGG Totally 2 motifs of 2 different REs have been found Description of REs found 963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GCN5-related N-acetyltransferase, putative |LOCUS: AT5G13780 |PROD: the same as GENE |complement(4446945..4448643) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.27 C - 0.24 1 tgaaggttat cggaatcttc ctactccatt acaatcaagg cccaattgga 51 cctcaaatcc taaactgaaa aagtttataa tgaatttcat taaatgcccc 101 taaaatataa gcaaaagttT CAATaaagac ctcatatttc tctataatta 151 caattcgtcc ccagattaat aaagcccaaa ggcattagac cgaaaaccct 201 AACCCCTCTT TATCCGCGCG AGAGCAATTG AGCAGCCATG GTTTGCATCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.005 -strand +2 : -7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.005 +strand -7 : +2 AAACCCTAA AC RSP01162 Mean Expected Number 0.001 +strand -125 : -113 TATAAtGAATTTC AC RSP01303 Mean Expected Number 0.010 +strand -8 : +2 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glutaredoxin family protein |LOCUS: AT5G13810 |PROD: the same as GENE |4455354..4457022 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +418 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.31 C - 0.20 1 aaaccgaccg tagaaactgg tttcgctgta accataacct ttcttaataa 51 gacaaccgcg ttttaccagt aaacgacttt tcctcgcaat ttaatcccac 101 ttttgttatt ttttcaaatt cgtttttcct cgaaggagca tcgagtaaat 151 atatcattaa agagccttta ataacttaga cataataatt atatctttaa 201 AAAAAAAACA GAAAAATTCT TTGCTTTGCA ACAAAGGCAG ACAGACAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.003 -strand +30 : +21 tGCAAAGCAA AC RSP00940 Mean Expected Number 0.006 -strand -186 : -195 TTCTACGGTc AC RSP01733 Mean Expected Number 0.009 +strand -145 : -140 CCGCGT Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G14050 |PROD: the same as GENE |4533292..4535303 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +249 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.31 C - 0.19 1 ctcgggcttt attgggcaaa tggaatctga tggaacaagg catatacttt 51 gcgataatta cgaaagtgac attgttattt tacctgtctt ggcccatggg 101 ctttttcaag agacataaga cccgttgacc cattaaaggg ctgtattaac 151 gacaagttcc aatttttatt tgtttatctt ttgttggaaa atgaaattct 201 AAAACCCTAA AAAATCCAAC CAGAAGGGTA GAAGCTCTCT CGCCGACAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.006 -strand -45 : -54 CTTGTCGTtA AC RSP00279 Mean Expected Number 0.001 -strand +10 : +2 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +2 : +10 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -110 : +9 GGCCCA-- ** bp --ACCCTAA AC RSP01209 Mean Expected Number 0.007 +strand -23 : -14 CTTTTGTTGG AC RSP01303 Mean Expected Number 0.003 +strand +1 : +10 aAAACCCTAA AC RSP01640 Mean Expected Number 0.005 -strand -83 : -92 tTATGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATNAP14 |LOCUS: AT5G14100 |PROD: ABC transporter family protein |complement(4549440..4551845) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.31 C - 0.22 1 tcacctctta acatttaagc attcttgcga gtgaaaacat aataatataa 51 tctctatctt ctttcgcagt tacatataat tttcataagg ttttgttctc 101 ttaaatcgga attctaATTG Gacatcataa tattcagctc ttgaactgaa 151 ccaaaacaat ccaagccgtt aaaaggaaaa caaaattgcc tcaaaagccc 201 AATTAAGGCC CATTCTACTC ATCCCTTACG ATTTATTAAA CTCACCGGAG 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14105 |PROD: the same as GENE |complement(4551991..4553053) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.28 C - 0.15 1 atatgtaagt aagtttaaca cactgtccat tatattggtg ttaacattaa 51 aaaagataaa ataaaaaatg gtatcaacat gaaataactc tgcatggcca 101 tgtcatATTG Tggagttaag tgggctttaa ataattttat agagcccata 151 taatatggac aacgacggcc cataaaaagg gtactgaatc atagtgaatt 201 ACGCACGATG AACGAATCAT GAGCTTTAGC TGCTTCTCCA AGTAAAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00460 Mean Expected Number 0.004 +strand -104 : -95 GcCATGTCAT Totally 1 motifs of 1 different REs have been found Description of REs found 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14240 |PROD: the same as GENE |complement(4595607..4597657) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.29 C - 0.22 1 atgctctcat aatatatata cgaaccctcc gaacggttaa gagtctaata 51 cattactcta gaataataaa ccaatatcta accggctttt aaaccaaata 101 ttcccggttc gaaatgtacc agatggtaAT TGTcggttta gccagaccaa 151 tttcggggat ggccttttat cattcgtctt tccagagaaa gaacgagatt 201 GCGATCACAG AGTGTCAAAG CAATCTGCTT TTTCTCCTCT CAGATTCAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01687 Mean Expected Number 0.009 +strand -118 : -112 CGGCTTT Totally 1 motifs of 1 different REs have been found Description of REs found 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: COP13 |LOCUS: AT5G14250 |PROD: |4597889..4600762 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.23 T - 0.30 C - 0.14 1 taaaaggcca tccccgaaat tggtctggct aaaccgacaa ttaccatctg 51 gtacatttcg aaccgggaat atttggttta aaagccggtt agatattggt 101 ttattattct agagtaatgt attagactct taaccgttcg gagggttcgt 151 atatatatta tgagagcatg tatttttatg gagaagatcc agagataatt 201 AAACAAACAG TTTAGCAAAA GATTTTGAGA GGGAGAAAAA GGGCGATCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01687 Mean Expected Number 0.009 -strand -114 : -120 CGGCTTT Totally 1 motifs of 1 different REs have been found Description of REs found 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14310 |PROD: the same as GENE |4615321..4617618 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +274 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.31 C - 0.20 1 agtgaatagc aaagatatat aaataatacg caaagagaaa agaaagaaag 51 aaaaaaaaaa ctttcagcat ttgtacgttt ctagaatttt acaaatcaca 101 aaagcaagag agaacattcg tgttacggta accgcgtttc agaggatcat 151 tttctcatat ctctctcgta gccaatgaca ctttctccac aatcctctct 201 CTTTCTTCTT CGTCGTCATC ATTTGATTCT TCTCTGTAAA TTACTCTGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand -161 : -148 AAGAAAGAAAGAAA AC RSP00860 Mean Expected Number 0.003 +strand -160 : -152 AGAAAGAAA AC RSP00860 Mean Expected Number 0.003 +strand -156 : -148 AGAAAGAAA AC RSP00861 Mean Expected Number 0.002 -strand +6 : -3 AGAAAGAGA AC RSP01071 Mean Expected Number 0.005 -strand -120 : -129 gAAACGTACA AC RSP01086 Mean Expected Number 0.007 +strand -129 : -120 TgTACGTTTC Totally 6 motifs of 5 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14370 |PROD: the same as GENE |complement(4631894..4633716) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.24 C - 0.20 1 taattaacta atcagaagtt taagacacag atgtaatgta gtaatctaat 51 ccaaccttat tatctcctgc acatccaaac agaatccaag attacaatag 101 ctttatCCAA Tgactgatag acacgtgtca aaaggtacca tcactgtcag 151 ctttccctct cgctccacct acatacttct gagtgagcga gaaaatgaga 201 ACAAAACTTA GAAAGCAGAG AAGAGTTAAA GTGTTAGAGA GAGAGAGAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.002 +strand -81 : -72 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -72 : -81 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -81 : -72 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -72 : -81 GACACGTGtC AC RSP00524 Mean Expected Number 0.007 -strand -73 : -79 ACACGTG AC RSP00864 Mean Expected Number 0.002 +strand +36 : +44 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +38 : +46 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +40 : +48 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +42 : +50 AGAGAGAGA AC RSP01035 Mean Expected Number 0.007 +strand -78 : -72 ACGTGTC AC RSP01094 Mean Expected Number 0.001 -strand -88 : -99 TcATTGGATAAA AC RSP01256 Mean Expected Number 0.003 +strand -80 : -73 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -73 : -80 ACACGTGT Totally 13 motifs of 7 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G14530 |PROD: the same as GENE |complement(4684623..4686912) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +44 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.16 T - 0.33 C - 0.27 1 gagtgtaaca aagtcgcagt gtacaggctc tctttcctaa tccaaaacga 51 catgtagttt ttatgactag aactgaacga caagatgttt ttcttttgtt 101 atcCCAATtc ttaaaactaa aacggctgcg tttagtaacc cgcgaaaccc 151 actaaactct ttagttctct ctctcgttcc cttgcccctc tccctctctc 201 GTCCTCGGAT TTTTCTCGTG CTTCACTGAT AATCCAGCTT GACGATGTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00680 Mean Expected Number 0.005 +strand -195 : -186 TAACAaAGTC AC RSP00864 Mean Expected Number 0.005 -strand -27 : -35 AGAGAGAGA AC RSP01174 Mean Expected Number 0.005 +strand -8 : +3 CCTCTCtCGTC Totally 3 motifs of 3 different REs have been found Description of REs found 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14600 |PROD: the same as GENE |4706948..4709146 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +573 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.21 T - 0.30 C - 0.19 1 ttccggcgaa aaggcaaggt aaacaagaag gaaaagagag ccgtatagat 51 tatttcagta ggcccaacat aaggcccagt aaatttttct gtctatataa 101 acccaaaccg gatttgccgg ttcgaaggta ccaaatctgt aatatggtcc 151 ggttggtctc aatgtccgat ttgatttgaa aaaaggaaag cgaaaaccct 201 ACTTAGAGGT TTTATTTCTT TGTCTGGTCA GATTTATTGT TCTTCCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01032 Mean Expected Number 0.007 +strand -137 : -128 CCAACATAAG Totally 1 motifs of 1 different REs have been found Description of REs found 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PDF1B |LOCUS: AT5G14660 |PROD: peptide deformylase |complement(4726709..4728749) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +75 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.30 C - 0.19 1 gaatggtgtg agagtttgtt tacctttcga agaagctcca aagaaggacc 51 tgttgtagag caagccgcga gtttcgaaag agaaaatgtc tctcctcaca 101 aaagctctaa taatagaatA TTGGttttaa aaatcgtcct tataaaatat 151 aaatatttcg gaattgcacc ttaaacaaaa gcagaattac aaaatggtct 201 ACTCAATCTT TTACTTACTC TCCACACAAA ATTCAGTTTT TCCGCTTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00749 Mean Expected Number 0.005 -strand -6 : -17 ATTTTGTAATTc AC RSP01033 Mean Expected Number 0.006 -strand -154 : -163 CCTTCTTTGG AC RSP01642 Mean Expected Number 0.005 +strand -117 : -108 AAATGTCTCt Totally 3 motifs of 3 different REs have been found Description of REs found 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14710 |PROD: the same as GENE |4746365..4747936 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.33 C - 0.16 1 agcaaagtca aaatattcgg tttctaatat atttaatcct tttttctgtt 51 ggagtaaaaa ctccaaattc gttgacaaaa aataataatg aagaaaaaag 101 gaatttaTCA ATgggccttt ttatcaacag ttagtggact tcttaggtag 151 gcttaataat ttctgagctt atctcacaac gatgccgttt gagtggagac 201 GAAGGCGTTT CCGGTTCTCT TCTCTCGTCG GAGTTCTGAG GTAAAAAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.003 -strand -134 : -141 TTTGGAGT AC RSP00508 Mean Expected Number 0.001 +strand -86 : -75 GCcTTTTTATCA Totally 2 motifs of 2 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: heavy-metal-associated domain-containing protein |LOCUS: AT5G14910 |PROD: the same as GENE |4823717..4825373 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +101 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.33 C - 0.16 1 tcgaagcgta ccaagttttt cacactaagt cctttcaagg tcagaactgt 51 gtttgcaagg tttgtcattg tcatttgcaa ggagtaatat aatgtttgat 101 ggtcaaaaat tatattactc catgaattta tgaaccttct gacagaaaga 151 gagcttttct aaagggtatt tatgtctttt tacaggcttg cttcgagtgg 201 ATAATGTGAG AAAAGAGCAA AACACAAAAA TGAAAAAACC TTCTTCTCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00550 Mean Expected Number 0.004 +strand -3 : +8 TGGATaATGTG AC RSP00790 Mean Expected Number 0.001 +strand -79 : -69 aTGAATTTATG AC RSP00861 Mean Expected Number 0.002 +strand -57 : -49 AGAAAGAGA AC RSP01598 Mean Expected Number 0.009 +strand -132 : -125 TGTCATTT Totally 4 motifs of 4 different REs have been found Description of REs found 526. Group RE: CAAT/13 M /AC: RSP00550//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: CAAT/13 M /TF: unknown 743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SAG101 |LOCUS: AT5G14930 |PROD: leaf senescence-associated protein (SAG101) |4828645..4830958 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.13 T - 0.43 C - 0.18 1 tcttgtacac atttgagtcc tatcttatat ggtaagcttt caaatgcaag 51 cgtgttattt ttattcacac ttgttctatc ttaatagtat gttgaactct 101 tcgcctttgg cgattcttcc cggaaaaggg accATTGAct ttcagataca 151 cttctttttt ttttttataa taattattat cagttcaatg atttttcaat 201 ATGGACTCTC GTTCTCAGAC ATTTATTTCT CTCAGTCTTA CAATATAAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.002 -strand -72 : -78 CCTTTTC AC RSP00288 Mean Expected Number 0.009 -strand -67 : -72 TGGTCC AC RSP01015 Mean Expected Number 0.002 +strand -160 : -151 CAAATGcAAG AC RSP01469 Mean Expected Number 0.004 -strand -185 : -194 TCAaATGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G14970 |PROD: the same as GENE |4847281..4848868 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.23 C - 0.15 1 tattgaaaag ggtcagtttc ttgattagtg tatatattaa tcgaccaaac 51 ataagaaaag accaaaatct ttggcttagt gggctcagat aaataaaacg 101 aacgaaggaa gatttttctt aaatttaaag aaaaaatcat aattatcaaa 151 aatatttaag gaaacaaata aaaaacaaaa agattcatct tccaataccc 201 AACGCATATT ACGCAGCCAC CACACAGCGG AGAGAGAGAG AGAAGAAACA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.002 -strand -176 : -183 ATCAAGAA AC RSP00629 Mean Expected Number 0.005 -strand -84 : -91 AAAAATCT AC RSP00864 Mean Expected Number 0.003 +strand +31 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +33 : +41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 +strand +35 : +43 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 +strand +29 : +37 GGAGAGAGA AC RSP01024 Mean Expected Number 0.008 -strand -180 : -186 AGAAACT Totally 7 motifs of 5 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 949. Group RE: R1 /AC: RSP01024//OS: Arabidopsis thaliana /GENE: GapB/RE: R1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: porin |LOCUS: AT5G15090 |PROD: the same as GENE |complement(4889298..4891475) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.31 C - 0.20 1 tcaaataaaa aacataaaaa aaatgccttg gagagagggg aatatataat 51 caacggttga taaagaggga caccgactca tgtcatatta atctaacggc 101 tgagatattt ttacttgata agcagggaaa tACAATatta taatataaat 151 taatttaggg ttaccctttc ttcttcccct tatatacaca aacaccacac 201 CTCATTTTCT CCAGAATCCT CCATTACTCT TCTTCTCGAC TTCGGAATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.001 -strand -45 : -58 AAATTAaTTTATAT AC RSP00036 Mean Expected Number 0.007 +strand -12 : -5 CAAACACC AC RSP00260 Mean Expected Number 0.006 +strand -47 : -41 TTTAGGG AC RSP00868 Mean Expected Number 0.009 +strand -65 : -54 TATTATAaTATA Totally 4 motifs of 4 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G15460 |PROD: the same as GENE |complement(5018752..5020706) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +598 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.29 C - 0.12 1 tgattaacca aacaaacaaa aatctccaat agcttttgaa tgtacaaata 51 aaaatgagat catatcaatg tacagagagc atttggtaat ataattatta 101 tttttaaaag gaatttaaaa ggtagagcat tttaATTGGc gtagagatgg 151 gaagaagaag aagaagaaca aggacataaa aaggatttgg ggaacatttt 201 GGCTGCAATT TATTCTCAAA CCTTATGAGT GAGATCTCTC TTAATCATTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.002 +strand -105 : -93 tATTATTTTTAAA AC RSP00171 Mean Expected Number 0.010 -strand +40 : +35 GAGAGA AC RSP01475 Mean Expected Number 0.001 -strand +2 : -7 CCAAAATGT Totally 3 motifs of 3 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: mitochondrial substrate carrier family protein |LOCUS: AT5G15640 |PROD: the same as GENE |5087374..5090043 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +219 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.29 C - 0.19 1 aacaaaaaac taagattgct aaaatacagt atttgtgaac aagttgaact 51 aaaatctaga agccagtccc gcacggtggc ttttaagccc aaatcaatgc 101 ccctttgATT GAgagatctg aaatttagga ctcaaaaagt ttgttgctga 151 ccaaacgcga aactttgatt aaaaacgcgt ttgcgtttta aaattctcct 201 GTGTTTGTGT ATGTGTGGAA AATTAATTTC TTCTCCCGAC GAATCCCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00859 Mean Expected Number 0.002 -strand -133 : -142 GACTGGCTtC AC RSP01602 Mean Expected Number 0.005 -strand -87 : -94 TCTCAATC AC RSP01635 Mean Expected Number 0.001 -strand -114 : -124 CTTAAAAGCCA Totally 3 motifs of 3 different REs have been found Description of REs found 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT5G15720 |PROD: the same as GENE |complement(5124528..5126184) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.28 C - 0.20 1 atgagaaaaa gaaaaaatac aaatctttca gaacagtaac agttaaccac 51 tacactccat gagatcattt accacgacca gttcctctga accaaacacg 101 gtctcttatg tcacgtaacc atgtctcttt ctatatcacc ataaagatat 151 gtagtagcgt tgttttcttc ataagcttat ctcaaagaac tcaaaacaga 201 GAAAGAGATA AAGATAGTAA CCAAGCATGA AAAGTTTGTT GATTTGTCTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.009 -strand +40 : +34 AACAAAC AC RSP00331 Mean Expected Number 0.006 +strand -86 : -78 GTAACCATG AC RSP00861 Mean Expected Number 0.002 +strand -1 : +8 AGAAAGAGA AC RSP00861 Mean Expected Number 0.001 -strand -69 : -77 AGAAAGAGA AC RSP00881 Mean Expected Number 0.003 -strand +43 : +34 ATCAACAAaC AC RSP01640 Mean Expected Number 0.003 +strand -82 : -73 CcATGTCTCT Totally 6 motifs of 5 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: serine/threonine protein kinase, putative |LOCUS: AT5G15730 |PROD: the same as GENE |5130541..5133190 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +746 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.30 C - 0.13 1 tttataatgc taaaaagtat taagcctacc aaaaagtaat agttacaaat 51 taaatatttc agaataaaat gattttatta aacgcgcttt taaagcgaac 101 aaatattctt tcggaccaaa aaaaaaaaag gaggaagaaa aaaatgttgg 151 agttagctct gtttctttgt tcatcagttt actttatgga cgaggtcctc 201 ATGTAGATTT GACTTTGTTT CAAAGCGGAG GAAGAAGGAG AAGGCAACAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.002 +strand -115 : -106 GCTTTTAAAG AC RSP01559 Mean Expected Number 0.007 +strand -119 : -114 ACGCGC AC RSP01600 Mean Expected Number 0.009 +strand +18 : +25 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA-binding S4 domain-containing protein |LOCUS: AT5G15750 |PROD: the same as GENE |5141194..5142861 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +258 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.17 T - 0.31 C - 0.24 1 ttaaggtaaa atctacatgg gcttctcagg cccataatga gaagtttaaa 51 aggctcaact caacaagatt tagttatgct aaggccttac aagttacaat 101 caaacagagg atagggaccg tcggatttat ctgacttcct ctccttcgat 151 tagggtttct gaattactac tcctctgcca attagggttt aagcctctcc 201 AGCATTTTCT TTCAGCTCAA ACCCAAGAAC CTCATCGCCG ATTATTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -51 : -43 TTAGGGTTT AC RSP00279 Mean Expected Number 0.001 +strand -19 : -11 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -11 : -19 AAACCCTAA AC RSP00369 Mean Expected Number 0.001 -strand -43 : -51 AAACCCTAA AC RSP01303 Mean Expected Number 0.002 -strand -10 : -19 TAAACCCTAA AC RSP01303 Mean Expected Number 0.002 -strand -42 : -51 gAAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -10 : -19 TaAACCCTAA AC RSP01497 Mean Expected Number 0.003 +strand -84 : -75 aCCGTCGGAT Totally 8 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CO |LOCUS: AT5G15840 |PROD: zinc finger protein CONSTANS (CO) |complement(5171185..5172761) |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.26 C - 0.29 1 gtcccaacga agaagtgcat aggaggagat gtttacactt tacactttac 51 actttacact ttacacatag gccttcccaa aagctcaact agctgcaaga 101 ggatCCAATa acatgtaaga gccactaacg ctgtgccacg tgtaggcact 151 caggattcga tctcccctct acttattctc tcacaccaga tataagcttt 201 ATTAGCCCCT TCTTTCAGAT ACCAGCTCCC ACACCATCAA ACTTACTACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -58 : -66 ACACGTGGC AC RSP00175 Mean Expected Number 0.002 -strand -59 : -66 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -57 : -66 tACACGTGGC AC RSP00524 Mean Expected Number 0.009 -strand -58 : -64 ACACGTG AC RSP00682 Mean Expected Number 0.002 +strand -66 : -57 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -57 : -66 TACACGTGGC AC RSP00869 Mean Expected Number 0.003 -strand -136 : -144 TGTAAAGTG AC RSP00869 Mean Expected Number 0.003 -strand -143 : -151 TGTAAAGTG AC RSP00869 Mean Expected Number 0.003 -strand -150 : -158 TGTAAAGTG AC RSP00869 Mean Expected Number 0.003 -strand -157 : -165 TGTAAAGTG AC RSP01255 Mean Expected Number 0.003 -strand -58 : -65 ACACGTGG AC RSP01584 Mean Expected Number 0.000 -strand -57 : -69 TACACGTGGCACa AC RSP01593 Mean Expected Number 0.000 -strand -57 : -68 TACACGTGGCAc Totally 13 motifs of 10 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 805. Group RE: EM1 /AC: RSP00869//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1410. Group TF: GBF /AC: RSP01584//OS: Nicotiana tabacum /GENE: Ntss-23/RE: G box /TF: GBF ||Identical REs AC: RSP01587 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: dehydrogenase-related |LOCUS: AT5G15910 |PROD: the same as GENE |5193140..5195399 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.37 C - 0.20 1 cttattctat tcaatgtttt agttttttat tcatgatgac acgtggatag 51 tctacgtgga agctagaacg ccacaatcgt ctccacagtt gtgattgtga 101 aaggtctctt tttttttttc ccgaagatct cgacttcacg actcatgatt 151 ccacaaagtt tttaagaatt ctgcagtttc agatttataa tcgcttgcct 201 AAGTTTCAAT TCATCTTCAT TCCGGGAGAA AAAGTCGCGA TACTTGAGCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.005 -strand -29 : -40 AGAATTcTTAAA AC RSP00057 Mean Expected Number 0.002 -strand -154 : -163 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 +strand -163 : -154 GACACGTgGA AC RSP00188 Mean Expected Number 0.003 -strand -154 : -163 TCcACGTGTC AC RSP00189 Mean Expected Number 0.002 -strand -141 : -150 TCCACGTAGa AC RSP00204 Mean Expected Number 0.001 +strand -163 : -154 GACACGTGGa AC RSP00280 Mean Expected Number 0.006 -strand -141 : -150 TCCACGTAGA AC RSP00340 Mean Expected Number 0.002 -strand -154 : -163 TCCACGTGTC AC RSP00445 Mean Expected Number 0.003 -strand -87 : -96 AAAAAAGAGA AC RSP00524 Mean Expected Number 0.007 +strand -162 : -156 ACACGTG AC RSP00682 Mean Expected Number 0.001 +strand -163 : -154 GaCACGTGGA AC RSP01035 Mean Expected Number 0.007 -strand -157 : -163 ACGTGTC AC RSP01255 Mean Expected Number 0.001 +strand -162 : -155 ACACGTGG AC RSP01259 Mean Expected Number 0.002 +strand -149 : -142 CTACGTGG AC RSP01274 Mean Expected Number 0.002 -strand -154 : -163 TCCACGTgTC AC RSP01722 Mean Expected Number 0.000 -strand -153 : -164 ATCCACGTGTCa AC RSP01734 Mean Expected Number 0.006 -strand -141 : -147 TCCACGT AC RSP01734 Mean Expected Number 0.006 -strand -154 : -160 TCCACGT Totally 18 motifs of 17 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KIN1 |LOCUS: AT5G15960 |PROD: |5209901..5210730 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.23 C - 0.25 1 agaaaacacg gaggcgagag gatcatactc tcacacagaa agagtcacat 51 tattatatcc tctaaaaaac caaactaaaa cgacacgtga agtcttgatc 101 agccgataaa tagctaccga cataaggcaa aactgatcgt accatcaaat 151 gtaatccacg tggttttaga ttactcgtgg caccacactc cctttagcct 201 ATAAATATAA ACCATTAAGC CCACATCTCT TCTCATCATC ACTAACCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.003 -strand -110 : -119 TtCACGTGTC AC RSP00682 Mean Expected Number 0.001 -strand -37 : -46 aCCACGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -45 : -38 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -38 : -45 CCACGTGG AC RSP01009 Mean Expected Number 0.002 +strand -86 : -78 TACCGACAT AC RSP01010 Mean Expected Number 0.002 +strand -86 : -78 TACCGACAT AC RSP01112 Mean Expected Number 0.000 +strand -89 : -73 AGCTACCGACATAAGGC AC RSP01139 Mean Expected Number 0.000 +strand -43 : -35 ACGTGGTTT AC RSP01296 Mean Expected Number 0.006 +strand -2 : +7 CTATAAATA Totally 9 motifs of 8 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 934. Group TF: DREB1A; DREB2A /AC: RSP01009//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB1A/DREB2A BS /TF: DREB1A; DREB2A ||Identical REs AC: RSP01610 RSP01763 RSP01771 RSP01779 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 1030. Group RE: DRE /AC: RSP01112//OS: Brassica napus /GENE: LUC/RE: DRE /TF: unknown 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G16030 |PROD: the same as GENE |5238183..5240750 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.36 C - 0.13 1 agtcaatttg attaacaacc tctatatatt ctagtttttt taaaaatata 51 tatattttga atctttcaag aaaaaacaaa agaatttaaa tatgagtaaC 101 CAATaaaaac ttttgaaaaa gataaggtac aaaaataatt cgttttttca 151 taaagtaaaa aacatctttt tataggtact gcctgatttc ttcattctcc 201 CTCCTTGGCT CAAAAGTTTT TGCTTTTTCA AAAAATTAAA GAAGAAGAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.004 +strand -188 : -177 TAACAAcCTCTA AC RSP00307 Mean Expected Number 0.005 -strand +9 : +4 GCCAAG AC RSP00653 Mean Expected Number 0.001 +strand -6 : +5 TTCTCcCTCCT AC RSP01237 Mean Expected Number 0.002 +strand -181 : -172 CTCTATATAT AC RSP01762 Mean Expected Number 0.005 -strand +8 : +3 CCAAGG Totally 5 motifs of 5 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G16040 |PROD: the same as GENE |complement(5240328..5243330) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.34 C - 0.21 1 ctccatgacc ataagctaaa aagttggatt aattaataaa tgacatggga 51 atgggaggta acattaactg gtccaaaata aataattaat gtaatgacac 101 attcacataa taatatctcg aATTGAaatc ccaccgagag tgccctgctt 151 ttccactgag tttcttcata tatatctctt tctctctcat ttgtaattgt 201 ATCTCTCACT TTTGTTTCAA TGGCTTCAGC TACTTCCGTC ATAGCCTGGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.006 +strand -68 : -62 ACCGAGA AC RSP00653 Mean Expected Number 0.005 +strand -21 : -11 TTCTCTCTCaT AC RSP00681 Mean Expected Number 0.004 -strand -166 : -174 TAATTAATC AC RSP00709 Mean Expected Number 0.008 -strand -113 : -121 TAATTATTT AC RSP00861 Mean Expected Number 0.003 -strand -18 : -26 AGAAAGAGA AC RSP01598 Mean Expected Number 0.006 -strand -156 : -163 TGTCATTT Totally 6 motifs of 6 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S7 (RPS7C) |LOCUS: AT5G16130 |PROD: the same as GENE |5268424..5270091 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +563 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.32 C - 0.18 1 gttagtagaa taaaaatatt ttgtttccac gaactcatat ctgatttaat 51 tttagccttt taggtgcatt aagcattttt caaactaatg ttgggttcgt 101 ggaaacgagt ttgtaaatac atgggcttac gggctttaag aaccttttaa 151 cggcccatat ttggtcacat tcgaaacaag gctaccttga aaccctaatc 201 ATCGAACATT AAAACCTGAT TTTACTGAAA CTGTGCTGCG AAGGAGAAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.003 -strand -181 : -192 AATATTTTTATT AC RSP00135 Mean Expected Number 0.002 -strand -181 : -192 AATATTTTTATt AC RSP00140 Mean Expected Number 0.001 -strand -180 : -192 AAaTATTTTTATT AC RSP00279 Mean Expected Number 0.001 -strand -3 : -11 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -11 : -3 AAACCCTAA AC RSP00741 Mean Expected Number 0.002 -strand -140 : -151 AAAAGGcTAAAA AC RSP01303 Mean Expected Number 0.003 +strand -12 : -3 gAAACCCTAA Totally 7 motifs of 7 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G16160 |PROD: the same as GENE |complement(5275515..5276609) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.28 C - 0.17 1 tctcattaat atagtaactc actaacgcca aaaattccaa aacaattggg 51 tgtaattgat aattagagaa agtgttaggt caattatgta ttagttcaaa 101 acattcgggt agttagttaa actagcataa tattttaggg taatttcggt 151 atttaatccc ccaacaaaaa ggaaaggaaa gtttccgacg tcggtttctt 201 AACATTCTCA AAGTTGCCGA CGGAGAAGCC ATGGCGACGA CGAGGACAAA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G16250 |PROD: the same as GENE |complement(5310100..5310954) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.30 C - 0.27 1 atagttatta ctactacagt atattatacc cggataaaca tgaccaatac 51 acggcccact aggcccacct tataattatt atattataat caatcattgg 101 gcccacctta ttaaaatcaa actagccgtt acaaaaacag ccgttccaga 151 ttcaacaacg gtcatattta gaaactttac cttctacaat ctctctcttc 201 ACTAACTTCT ACATAAACAA ACTCGTTGCG CTCTTCTCAA TTCCACGAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.003 -strand -3 : -11 AGAGAGAGA AC RSP00868 Mean Expected Number 0.006 +strand -124 : -113 TATTATATTATA AC RSP01030 Mean Expected Number 0.007 +strand -31 : -24 AGAAACTT AC RSP01057 Mean Expected Number 0.001 +strand -76 : -66 GCCGTTACaAA Totally 4 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 977. Group TF: GT-3a /AC: RSP01057//OS: Arabidopsis thaliana /GENE: rbcS-1a/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G16310 |PROD: the same as GENE |complement(5342062..5344286) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.31 C - 0.18 1 ggctctctcc ggcaaggata tataagaacg ttatcggttc ggttcggttc 51 gagtaagttt aataaaacca gaaccgaatt gtttttcact tgatttggtt 101 cgatttatag aaattgaaat ggtttggatg aatTCAATtt cgtttctact 151 cggtttagag cgacctctat taagacaaaa tcgagaccac accagtctat 201 AGTCTCTCTT TCGAGTCTGC AGCTAGCGTG AAGACGATGA AATCGATGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.003 +strand -98 : -87 ATTTATAgAAAT AC RSP00157 Mean Expected Number 0.003 -strand -87 : -98 ATTTcTATAAAT AC RSP01601 Mean Expected Number 0.007 +strand -117 : -110 TTTCACTT Totally 3 motifs of 2 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BCCP1 |LOCUS: AT5G16390 |PROD: biotin carboxyl carrier protein 1 (BCCP1) |complement(5360812..5363129) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.32 C - 0.17 1 taatttccta aacaggattt taaccctaac attttttata tttatttaaa 51 agtaataatt catttaaatt cttcaaggta aaaaatacga tagtccacaa 101 ggATTGGgag taatcgcgaa tacagaacaa cagatcagag tatgacacgt 151 ggcgaaatct gaaagagagt tataatcaaa gagaaacgcg ttccgaatcc 201 GACATCTTCT CTCTCTCTTT CTGAAGTGAA CTGTTGTTGT TGTGCTCTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -56 : -48 ACACGTGGC AC RSP00056 Mean Expected Number 0.003 -strand -48 : -57 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -57 : -48 GaCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand -48 : -57 GCCACGTGtC AC RSP00175 Mean Expected Number 0.001 +strand -55 : -48 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -57 : -48 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -58 : -47 TGACACGTGGCg AC RSP00340 Mean Expected Number 0.003 -strand -48 : -57 gCCACGTGTC AC RSP00524 Mean Expected Number 0.008 +strand -56 : -50 ACACGTG AC RSP00861 Mean Expected Number 0.001 -strand +22 : +14 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +18 : +10 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +16 : +8 AGAGAGAGA AC RSP00936 Mean Expected Number 0.000 -strand -47 : -58 cGCCACGTGTCA AC RSP01034 Mean Expected Number 0.004 +strand -54 : -48 ACGTGGC AC RSP01035 Mean Expected Number 0.008 -strand -51 : -57 ACGTGTC AC RSP01255 Mean Expected Number 0.001 +strand -56 : -49 ACACGTGG AC RSP01303 Mean Expected Number 0.004 +strand -181 : -172 TtAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand -181 : -172 TtAACCCTAA Totally 18 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G16480 |PROD: the same as GENE |complement(5381116..5382900) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +279 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.28 C - 0.17 1 tcataacgaa tctttgatct attaatagaa aattctaaaa attgactctt 51 taagtcaaaa taggaaattt cccaatcggt tcaacgaaaa gttgaaggat 101 gtaacaacgt gtcataatct ggtgagagat tacagcgaaa acaaaacatt 151 cccttaaaaa cctgaagagg atccaacaag aacaatctct aatggcggtt 201 TTTCAAAGGT TTAACAATTT TTTTCCAAAT CCGAAAAAAT CTCTTAACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.002 +strand -97 : -88 aCAACGTGTC AC RSP01035 Mean Expected Number 0.005 +strand -94 : -88 ACGTGTC AC RSP01600 Mean Expected Number 0.009 +strand +1 : +8 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ZFN3 |LOCUS: AT5G16540 |PROD: zinc finger (CCCH-type) family protein |5403191..5405157 |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +249 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.39 C - 0.18 1 gaaattcagg ttagagatca aataaaatct tgttattatt tgattcatga 51 tcatacatac taaccaaatc aggatttatg aaataaatta ttctttctcc 101 tcaaccgaaT CAATatgaag ataaaagggg taatttagtc ttttcgaatt 151 cgtttttctt accgaatctc tttagttttt tttctttctt ttgtgtggag 201 GAGAGAAGAG AACGCAACAC TTTCTTCCCA ATCTCTCTCT GCTTTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.005 +strand -110 : -100 TTCTtTCTCCT AC RSP00864 Mean Expected Number 0.002 -strand +40 : +32 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G16650 |PROD: the same as GENE |complement(5463183..5465332) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +254 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.33 C - 0.15 1 gtgaatttgg ttcaatttaa ttcgaaaaaa tctttgttct cttagtaata 51 tattgtaacg taaattattt gttttcagtg gaaattttat atttattaca 101 aagtggataa ggtttgaaat aatccgtaaa aaaaaaaaag acaagagaga 151 taaacaatgg ccggtggcct cgtcacaata tcccaaaagg aaccgaaaac 201 GAAAACTCAT AAAGCCAAAG CCTTTCTTCT TCTTCTTTTC TTCCGATTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01054 Mean Expected Number 0.003 -strand -139 : -149 tACGTTACAAT AC RSP01641 Mean Expected Number 0.006 -strand -55 : -64 TCTTGTCTtT Totally 2 motifs of 2 different REs have been found Description of REs found 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: dehydroascorbate reductase, putative |LOCUS: AT5G16710 |PROD: the same as GENE |5483291..5485069 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +24 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.30 C - 0.18 1 aatcaagact accactgagc atattcaaga aatcattttt tttaaaaggc 51 taaaagactt taacagtaat gggctgagaa tataaagaga ttgaggccca 101 tgttggtctt cacttgatta tcttatattt cgccacgtgt cagtcaactt 151 agccactgag aatttgctga ttatctgagt catgagccag ttgactagtt 201 GGAAATTAAA CCACTGCGAA AAATATGATA AGCCTTAGGT TTCAACCAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -61 : -69 ACACGTGGC AC RSP00056 Mean Expected Number 0.003 +strand -69 : -60 GCCACgTGTC AC RSP00073 Mean Expected Number 0.001 +strand -69 : -60 GCCACGTGtC AC RSP00073 Mean Expected Number 0.001 -strand -60 : -69 GaCACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand -62 : -69 CACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -60 : -69 GACACGTGGC AC RSP00219 Mean Expected Number 0.000 -strand -59 : -70 TGACACGTGGCg AC RSP00340 Mean Expected Number 0.003 +strand -69 : -60 gCCACGTGTC AC RSP00524 Mean Expected Number 0.008 -strand -61 : -67 ACACGTG AC RSP00741 Mean Expected Number 0.003 +strand -157 : -146 AAAAGGcTAAAA AC RSP00936 Mean Expected Number 0.000 +strand -70 : -59 cGCCACGTGTCA AC RSP00949 Mean Expected Number 0.005 -strand -4 : -11 TAGTCAAC AC RSP01034 Mean Expected Number 0.005 -strand -63 : -69 ACGTGGC AC RSP01035 Mean Expected Number 0.008 +strand -66 : -60 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -61 : -68 ACACGTGG Totally 15 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 703. Group RE: box 1 /Group TF: GT-1 /AC: RSP00741//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 1 /TF: GT-1 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: inositol 1,3,4-trisphosphate 5/6-kinase |LOCUS: AT5G16760 |PROD: the same as GENE |5509677..5511235 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +216 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.13 T - 0.30 C - 0.27 1 tgaactatat aattggccca taataattat gaagcaatcg caaccgtcca 51 tctaatgaaa aagacctaga ctcgtcctct ttcgcacgct aacacgtgtt 101 caacattcgc cacttgcatc ttcacacgta CCAATattcg attccacacg 151 tgtacaacat tcccttctct ctctgttatt tcatctctag aaaagggcac 201 AAAAAACCAA ACTTTACGAT TTCTCCTCTC TGGAATCTCG ATTCTGTATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00212 Mean Expected Number 0.007 +strand -180 : -172 TAATAATTA AC RSP00243 Mean Expected Number 0.001 -strand -1 : -8 GTGCCCTT AC RSP00254 Mean Expected Number 0.004 -strand -5 : -11 CCTTTTC AC RSP00524 Mean Expected Number 0.008 +strand -109 : -103 ACACGTG AC RSP00524 Mean Expected Number 0.008 +strand -55 : -49 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -48 : -54 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -102 : -108 ACACGTG AC RSP00782 Mean Expected Number 0.000 +strand -110 : -101 AACACGTGTT AC RSP00782 Mean Expected Number 0.000 -strand -101 : -110 AACACGTGTT AC RSP00837 Mean Expected Number 0.006 -strand -148 : -157 AGATgGACGG AC RSP00864 Mean Expected Number 0.003 -strand -27 : -35 AGAGAGAGA AC RSP00978 Mean Expected Number 0.002 +strand -110 : -101 AaCACGTGTT AC RSP00978 Mean Expected Number 0.002 -strand -101 : -110 AACACGTGTT AC RSP01152 Mean Expected Number 0.003 +strand -78 : -69 CACACGTaCC AC RSP01256 Mean Expected Number 0.002 +strand -109 : -102 ACACGTGT AC RSP01256 Mean Expected Number 0.002 +strand -55 : -48 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -48 : -55 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -102 : -109 ACACGTGT AC RSP01702 Mean Expected Number 0.008 +strand -110 : -101 AACACGTgTT AC RSP01702 Mean Expected Number 0.005 -strand -101 : -110 AACACGTgTT AC RSP01717 Mean Expected Number 0.000 -strand -100 : -111 GaACACGTGTTA Totally 21 motifs of 12 different REs have been found Description of REs found 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 236. Group TF: MNF1; MNB1a; MNB1b /AC: RSP00243//OS: Zea mays /GENE: PEPC/RE: MNF1 BS core /TF: MNF1; MNB1a; MNB1b 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 737. Group TF: G-box binding TF /AC: RSP00782//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 6 /TF: G-box binding TF 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G16790 |PROD: the same as GENE |complement(5522499..5523914) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +436 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.21 T - 0.25 C - 0.12 1 gatttaaaaa aaaaaaaaca aaccagacca attttctggg ttagtaacaa 51 atttcagttc accactgtga atgcttaaat tgtaatttaa aaaacaatag 101 ggattaggta tataataaat gaaagttaac gagcaaactg tgaagaacga 151 gggaaagggg aagaaggaac ggaaacatag aattagggtt cacagtgcat 201 CAGAGAATCA TAATTTCTCT GTTTCGGATT TTTAATCGTA CAAGAGGTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01303 Mean Expected Number 0.003 -strand -9 : -18 TgAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -9 : -18 TGAACCCTAA Totally 2 motifs of 2 different REs have been found Description of REs found 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT5G16840 |PROD: the same as GENE |5535923..5538253 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.29 C - 0.17 1 cataaactta ataattgtgt tacgaaactc ctaacttttg ttttgaactg 51 aagagggaaa aaatagaaat atatactaaa aaagtgaaaa tattaattgt 101 tggaaACAAT tagggactaa aataggatta aagggcgtaa cgcaaaccca 151 cacgttgagt gtgaggtgtc atataaagca aaatacactc ttccctctct 201 ATCTATCTAC GCATCATCGA TCTCGAAGTA CGTTTCGGTT TTCAGGCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00188 Mean Expected Number 0.003 -strand -43 : -52 TCAACGTGTg AC RSP00320 Mean Expected Number 0.002 +strand +12 : +22 cATCATCGATC AC RSP00756 Mean Expected Number 0.003 -strand -36 : -43 CTCACACT AC RSP00953 Mean Expected Number 0.005 -strand -184 : -192 CAATTATTA Totally 4 motifs of 4 different REs have been found Description of REs found 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 306. Group RE: Box I /Group TF: RNFG1 /AC: RSP00320//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: Box I /TF: RNFG1 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G16870 |PROD: the same as GENE |complement(5546814..5548739) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +194 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.10 T - 0.40 C - 0.22 1 ttatcctgac tatgtttccc ttcctttacg ctaaacatta ttttcaaaaa 51 gatatgcttt tttattttta tttttttcat atcaaccaat cacgttacgc 101 aatttcatcc aacgaaccaa aaaataatcg atcattaaat gttttttttt 151 ttttttcttg ccagtaaaat cttcacgccg gtttcaggaa aaaaaacttc 201 ATCATCGGAG CCGTTTCTCT CTCTCGAACT CGTAAGCTTT CTTCGATTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00263 Mean Expected Number 0.001 +strand -95 : -87 CATCCAACG AC RSP00377 Mean Expected Number 0.005 +strand -117 : -108 AACCAATCaC AC RSP00864 Mean Expected Number 0.006 -strand +24 : +16 AGAGAGAGA AC RSP00996 Mean Expected Number 0.005 -strand -115 : -124 GTTGATATGA Totally 4 motifs of 4 different REs have been found Description of REs found 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G16880 |PROD: the same as GENE |5548969..5551466 |SUPPORT | 4 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +692 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.29 C - 0.12 1 gattttactg gcaagaaaaa aaaaaaaaaa catttaatga tcgattattt 51 tttggttcgt tggatgaaat tgcgtaacgt gattggttga tatgaaaaaa 101 ataaaaataa aaaagcatat ctttttgaaa ataatgttta gcgtaaagga 151 agggaaacat agtcaggata aagtaattcc cacgaccaaa cacttaaaaa 201 AGGAACGCAG TTTTCTTCTT CTTCAGGATT TGTACGGCGT CAACGGGCAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00263 Mean Expected Number 0.000 -strand -135 : -143 CATCCAACG AC RSP00377 Mean Expected Number 0.003 -strand -113 : -122 AACCAATCaC AC RSP00996 Mean Expected Number 0.004 +strand -115 : -106 GTTGATATGA AC RSP01210 Mean Expected Number 0.002 -strand +2 : -8 CTTTTTTAAG Totally 4 motifs of 4 different REs have been found Description of REs found 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G16920 |PROD: the same as GENE |5567014..5568131 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.26 C - 0.24 1 agttatgttt tggtgatcta tagtattatc cacagtaaat atcacaaatt 51 atactagttg aacaaactat ctacaaactc gttcaccatg cggataccat 101 gaccttatga ccactcgATT GGgggaaaac aacacacgca tgtccaaagc 151 taaaccttat ctatcaccta ccaaaattct tcacctaact atgagagatt 201 ATATCTAAGT ATCCCACCAA TCTAATCTCC AAAAAAACCC CAAAAAAGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.004 +strand -39 : -29 TaTCACCTACC AC RSP00331 Mean Expected Number 0.005 +strand -108 : -100 GATACCATG AC RSP01184 Mean Expected Number 0.004 +strand -39 : -28 TaTCACCTACCA Totally 3 motifs of 3 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NADP-dependent oxidoreductase, putative |LOCUS: AT5G16990 |PROD: the same as GENE |complement(5581661..5584032) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +180 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.30 C - 0.16 1 ttctgttctt aatattgacc gttgctttta atcttcaatt accaccgtcc 51 acgtgtcact catttatcac catccttttc ctatatcagt aatgtataaa 101 caccaactct tgtgaaaatg tgacagaaga gagaATTGGa aagaaaatga 151 aatgtgaaag gaaatgaaaa tatatcacaa aatgtgaaag tgtcaacaat 201 AAAAACGCTC GAAAGAGTTT AAAAATTGTG AACATATTGT GATGAATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.009 +strand -88 : -78 TGAAAaTGTGA AC RSP00057 Mean Expected Number 0.002 +strand -153 : -144 TCCACGTgTC AC RSP00068 Mean Expected Number 0.003 -strand -144 : -153 GACACGTgGA AC RSP00188 Mean Expected Number 0.002 +strand -153 : -144 TCcACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -144 : -153 GACACGTGGa AC RSP00254 Mean Expected Number 0.009 +strand -127 : -121 CCTTTTC AC RSP00284 Mean Expected Number 0.008 +strand -156 : -151 CCGTCC AC RSP00340 Mean Expected Number 0.002 +strand -153 : -144 TCCACGTGTC AC RSP00524 Mean Expected Number 0.005 -strand -145 : -151 ACACGTG AC RSP00653 Mean Expected Number 0.003 -strand -66 : -76 TTCTCTCTtCT AC RSP00682 Mean Expected Number 0.001 -strand -144 : -153 GaCACGTGGA AC RSP01035 Mean Expected Number 0.005 +strand -150 : -144 ACGTGTC AC RSP01255 Mean Expected Number 0.001 -strand -145 : -152 ACACGTGG AC RSP01274 Mean Expected Number 0.002 +strand -153 : -144 TCCACGTgTC AC RSP01589 Mean Expected Number 0.000 +strand -153 : -141 TCCACGTGTCACt AC RSP01734 Mean Expected Number 0.006 +strand -153 : -147 TCCACGT AC RSP01744 Mean Expected Number 0.000 +strand -188 : -177 tATTGACCGTTG Totally 17 motifs of 17 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 275. Group RE: Box A /AC: RSP00284//OS: Petroselinum crispum /GENE: PAL-1/RE: Box A /TF: unknown ||Identical REs AC: RSP00849 RSP00856 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1412. Group TF: GBF /AC: RSP01589//OS: Glycine max /GENE: SRS-1/RE: G box /TF: GBF 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 1551. Group TF: WRKY11 /AC: RSP01744//OS: Arabidopsis thaliana /GENE: AtCMPG1 (At3g02840)/RE: WRKY11 BS /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G17030 |PROD: the same as GENE |complement(5603136..5604741) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.14 T - 0.34 C - 0.27 1 agaaagagtc tatacttgct cggtggctca tctacgaact ctctttagcg 51 tacgaactct ctttagcgta cttctattta atgtaactac gcacattact 101 ctctctttag catacttcta tttgattaat gtaactacgc acatttttct 151 ctctttagcg tacttctatt taatgtaact acgcacatta ttctctcctt 201 AGCATTGCCT GCATCATGGC CAAACCCTCG CAGCCAACGC GAGACTCCCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 +strand -82 : -72 TATTTGaTTAA Totally 1 motifs of 1 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ADP-ribosylation factor, putative |LOCUS: AT5G17060 |PROD: the same as GENE |5610809..5613063 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +250 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.31 C - 0.14 1 actcactgaa ttcgtttcgt ttggtaggtg atatatgtgg ctattgttaa 51 accgagcctg ccaacccaaa ataaaaagtt agaaaccaat ccgacccatt 101 atttgtaaAT TGGgctgcaa agcctagaaa aaaatattca ctattttgcg 151 atagtattat taaatttata tatttgagaa aatgagagaa tggtggaagt 201 AAAATAATTT GAAAGGAATA TGAATATTCC GTTGAAGAAG ACTTGCTCCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.009 +strand -48 : -37 AGtATTATTAAA AC RSP00286 Mean Expected Number 0.002 -strand -168 : -178 TaTCACCTACC AC RSP00351 Mean Expected Number 0.000 +strand -179 : -167 TGGTAGGTGAtAT AC RSP00377 Mean Expected Number 0.002 +strand -117 : -108 AACCAATCCg AC RSP00631 Mean Expected Number 0.000 +strand -165 : -153 TGTGGcTATTGTT AC RSP00651 Mean Expected Number 0.001 -strand -172 : -182 ACCTACCAAaC AC RSP00859 Mean Expected Number 0.001 +strand +40 : +49 GACTtGCTCC AC RSP01184 Mean Expected Number 0.001 -strand -168 : -179 TaTCACCTACCA AC RSP01463 Mean Expected Number 0.003 +strand -37 : -25 ATTTATATATTTg Totally 9 motifs of 9 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 336. Group RE: 13 bp-box /AC: RSP00351//OS: Nicotiana tabacum /GENE: LTR-Tto1/RE: 13 bp-box /TF: unknown 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ADP, ATP carrier protein, mitochondrial |LOCUS: AT5G17400 |PROD: the same as GENE |complement(5728793..5730378) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +272 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.31 C - 0.24 1 accatatacc gaaccatctc cggttttcct taaaatgtcc ggttttaatt 51 gaaccagaaa tttccagatc ctggtttcaa attcgaaatt aaaaaaggac 101 aaaaccattt ttttaagtaa agaaagaaaa aaccagccAT TGCtcctgcc 151 ctgtcctcca cctccagctt tgaaattcac agaaaatgat tatctctttt 201 CTATTTTATT GGCTTCTCAA AACGAAATAA CGAAATCGCC TCCTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.009 -strand -25 : -32 ATTTCAAA AC RSP00646 Mean Expected Number 0.000 +strand -116 : -103 GAAATTAAAAAaGG AC RSP00860 Mean Expected Number 0.001 +strand -80 : -72 AGAAAGAAA AC RSP01600 Mean Expected Number 0.007 -strand -26 : -33 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RCP1 |LOCUS: AT5G17520 |PROD: root cap 1 (RCP1), identical to GI:6137138 |complement(5772586..5775347) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.33 C - 0.22 1 acataatgga cttttctcta gccaaagcta ttgggtttca agccatttca 51 aaagatattc gtgtttttga atttttcttc tagttttgac tcaattttta 101 tatcctctgt taccgaaact tgaagaaaac aaaatctagg aTCAATacaa 151 aagagcacat gatcattgct acaattaacg ataataccaa ccgtccacgt 201 GCATCTCTTT CCCGGCCCAA GAACACTCTC ACTTACATGA TTTCACTGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00440 Mean Expected Number 0.001 +strand -193 : -185 GGACTTTTC AC RSP00974 Mean Expected Number 0.002 +strand -7 : +3 TcCACGTGCA AC RSP01776 Mean Expected Number 0.007 +strand -30 : -20 ACAATTAAcGA Totally 3 motifs of 3 different REs have been found Description of REs found 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BolA-like family protein |LOCUS: AT5G17560 |PROD: the same as GENE |5788456..5789925 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +20 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.32 C - 0.20 1 atttccaaag gcggtgttgt tcaattgatc aagttcagga ttcgatccaa 51 cggctgacat tatttccatt aaagaattat attattaaaa tcttaaaatg 101 acttgaaacc acgaaagccc attaagttta actgtgttgt gtcgtaagcc 151 cattttttca agaaccaacg acattgccac agaacatttt tttttttttt 201 ACTCGCAAGT CTCTCAAGCA ATGGCGCAGA CATTAATGGC GACAACTCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.008 +strand -89 : -83 CGAAAGC AC RSP01497 Mean Expected Number 0.002 -strand -147 : -156 GCCGTtGGAT Totally 2 motifs of 2 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G17620 |PROD: the same as GENE |complement(5805762..5808563) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.39 C - 0.11 1 ttttcctttc ggttttgttt tcacttttta cacgcaggag atgagaaaaa 51 ggccaatatg gtaaaattag ttttttaaag ttttgagaga aaactttagg 101 tccATTGAtg ttaaattact taagtttgtt ttttcttttt cattttgggt 151 tttgttttca ctgtttacac gctggagatg agaaaatggg ccaatgtggt 201 AAATTAGGCT TTTAAAAAGT TTTTGAGAGA AGAAGACGAG ACTAGTGTCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01601 Mean Expected Number 0.008 +strand -182 : -175 TTTCACTT Totally 1 motifs of 1 different REs have been found Description of REs found 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G17660 |PROD: the same as GENE |complement(5818550..5820866) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.33 C - 0.19 1 atgatgagct caagcggaga aagctggagt ttttaaaatc cacaagttct 51 taagcatttt aatgtattta cacaaacacc ccatttattt cgattcttat 101 cacattaagt acaaaactct tgaacgtttt ctagATTGAg atcacagctt 151 tcttcttcct tcattgggtt taagaagcag gagaagaaca ctaaaagaaa 201 ACATTTTTAT GGTCTGGAAT TGAATCCAAT CCTCCTCTGT TTCTCTAACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.004 +strand -128 : -121 CAAACACC AC RSP01134 Mean Expected Number 0.002 -strand +20 : +11 aTTCCAGACC AC RSP01602 Mean Expected Number 0.003 -strand -60 : -67 TCTCAATC Totally 3 motifs of 3 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATCBR |LOCUS: AT5G17770 |PROD: NADH-cytochrome b5 reductase |complement(5864253..5866650) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.20 T - 0.27 C - 0.12 1 gacatttctg gtgggtgagt gattgaaaaa aggctgtaac acaaattgta 51 attgaaaaaa cgaagatatt tttttcttta gaaaaattat actaagaaaa 101 aaaaATTGGt caaaaatgta acaaatatgt taatggaata ataatgtgtt 151 gcaaaagagg caaactatac aacgtgaaag tggtaggtct accagatccc 201 ATACCCTCAT TTTAATGGCG GAGATTACAA GGGAAAGAGA CAACTCCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00871 Mean Expected Number 0.005 +strand -187 : -178 GGTGAGTgAT AC RSP00961 Mean Expected Number 0.009 +strand -51 : -44 TGCAAAAG AC RSP01184 Mean Expected Number 0.001 -strand -181 : -192 ACTCACCcACCA Totally 3 motifs of 3 different REs have been found Description of REs found 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: chaperone protein dnaJ-related |LOCUS: AT5G17840 |PROD: the same as GENE |complement(5895678..5897152) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.16 T - 0.37 C - 0.23 1 gcattcatta tgataaagtt ggcccataat cttttttatg gatccatttg 51 tccaattcaa atttattgat tactgtcacg tcccatcctt tttgatgttt 101 atgggctcgg tttagatacc cggatatctt accggtatag tccggttatg 151 ggacctcaac gaaaactgag acatatgaac ggcgatccct ccaaagttat 201 CACCTACCTT CTCCAATCTC TTTTCGATTT CGAATTTTCC ATCTTTCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.003 +strand -3 : +8 TaTCACCTACC AC RSP00442 Mean Expected Number 0.004 -strand -2 : -11 TAACTTTGGA AC RSP00635 Mean Expected Number 0.001 -strand -46 : -53 GGTCCCAT Totally 3 motifs of 3 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: plastid-specific ribosomal protein-related |LOCUS: AT5G17870 |PROD: the same as GENE |5907777..5908337 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.25 C - 0.22 1 taagcaacaa aaagttcgat gccactaata atttaatttt tgttctcttc 51 ttatcttata gattgttgca gcctgcaggc ttgcagcata acgagttaca 101 taactatata caaaggcCCA ATagacacct caaaggccca ataaaaaagc 151 ccaggaaaaa cgaaaacgaa gatatgaagt tcttctctaa tccgaagcaa 201 GAGGCTCAAA CTCACTTTCA CTTGCACAAA GATAAGGAAA CCATGTCTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.001 -strand -144 : -152 AAGATAAGA AC RSP00331 Mean Expected Number 0.007 +strand +37 : +45 GAAACCATG AC RSP00628 Mean Expected Number 0.004 -strand -134 : -141 AACAATCT AC RSP01601 Mean Expected Number 0.004 +strand +16 : +23 TTTCACTT Totally 4 motifs of 4 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATAPRL7 |LOCUS: AT5G18120 |PROD: expressed protein |5990958..5993938 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +429 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.29 C - 0.13 1 ggtctactaa atgggcctta gtgattagtt agttttaata tctcaatgat 51 tttcattctt ttttacagta aacaaaataa gaaacagaaa attcaaaagt 101 ggacaaaatg tattaagtat agttgttggt tattacataa actaatccaa 151 ccggaacaaa agagatatgt cttaaacaca tacacatgca cctatcacgg 201 CAAGATTAGT GGTGTAGTGG AGAAAATTAA AAAAAAAAGG AATGTGTGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 +strand -16 : -10 CATGCAC AC RSP00892 Mean Expected Number 0.004 +strand -166 : -158 TTAATATCT AC RSP01007 Mean Expected Number 0.007 +strand -11 : -5 ACCTATC Totally 3 motifs of 3 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G18130 |PROD: the same as GENE |5995482..5997400 |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +154 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.36 C - 0.19 1 aatttcttac ctcaccaatg gttatatgaa tataaaaatg atttctgtaa 51 acaattctgt tgaaattatg taattatcat tatatattaa atcactaatc 101 aacactttat actttttaac agtgacaaca ctaaatgcgt ccatttaaga 151 gtttcgcttt tccgtctctt cttcttcttt gatcatctat ttaaggatct 201 AGAGAAACCA CTTCGCAACG ATGAGGGAGA TAGGTCACTC CTCAAAATTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00548 Mean Expected Number 0.002 -strand -176 : -186 aTAACCATTGG AC RSP00749 Mean Expected Number 0.006 +strand -136 : -125 ATTaTGTAATTA AC RSP01007 Mean Expected Number 0.006 -strand +35 : +29 ACCTATC Totally 3 motifs of 3 different REs have been found Description of REs found 524. Group RE: CAAT/13 Y /AC: RSP00548//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: CAAT/13 Y /TF: unknown 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 932. Group TF: PtMYB1; PtMYB4 /AC: RSP01007//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 2 (AC-I) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G18470 |PROD: the same as GENE |6127799..6129679 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.33 C - 0.19 1 agagatatga cctcaacctt aacccaatct ttcgtctgtg tttgaaactt 51 ctgctcgtaa agagactcta gtaaaaccct tcggaagaaa ttttttaggt 101 agtcgccatc atataattta aagcttatga gacttgttat gttacaagca 151 gagaccaaag actattcata atcacttatc agagtataaa atactctttt 201 TTTGTCAATC GAGTATAAAA TACTCTGATA TCACTTATAC AAAGTTCTAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00501 Mean Expected Number 0.004 -strand -144 : -150 CGAGCAG AC RSP01073 Mean Expected Number 0.000 +strand -56 : -48 CAAGCAGAG Totally 2 motifs of 2 different REs have been found Description of REs found 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G18490 |PROD: the same as GENE |complement(6134154..6136767) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.27 C - 0.17 1 atgtttatta tttcaagata atttcctttt gaaagaaacg agaaattttt 51 tgacatttgg ttttgttggg gtgaaatttg aattatttgt aaatacaggg 101 gtcttaatag aaaacgttga aagaaaggga caaaatctga aaaagggaat 151 aaaaagcaca gaaaacaaat aaaaagggcc aaactccaaa ctccaaaggc 201 ACACCACCAT TGAATTGAAC TTCCCTCACA CGCAAGTACC ACACCTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.006 -strand -170 : -176 CAAAAGG AC RSP00405 Mean Expected Number 0.007 -strand -4 : -11 TTTGGAGT AC RSP00405 Mean Expected Number 0.007 -strand -11 : -18 TTTGGAGT AC RSP00716 Mean Expected Number 0.000 -strand -136 : -144 CAAAACCAA AC RSP01205 Mean Expected Number 0.009 -strand -55 : -64 CCTTTTTCAG Totally 5 motifs of 4 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PCB2 |LOCUS: AT5G18660 |PROD: isoflavone reductase-related |complement(6220783..6222230) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.34 C - 0.16 1 gattagtgat atgatgaatt acggtacagg tttttgtctt cttttttttt 51 accaaatata tggatcagaa tgataaaatc acataactcc caccgaattt 101 caccattgat aaagtATTGG ggtaaaaacg aaataacgta aaatactttg 151 tctgttttgg aaattatatt atctgtgttc tgaggatgaa gaagaagatc 201 AAACGAGTTG CTACAATGGC CTCACACTAG GATCTTCACT TTCTCGCACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.003 +strand -114 : -108 CTCCCAC AC RSP00756 Mean Expected Number 0.002 +strand +21 : +28 CTCACACT Totally 2 motifs of 2 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: oxidoreductase |LOCUS: AT5G18900 |PROD: the same as GENE |complement(6304217..6306287) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.33 C - 0.20 1 tttcaaaatt tctcagataa tcctttttca aatgtttcca ctttaaacaa 51 tttctgtaaa attttcttaa aagagctgct aattaagaag gagccggttc 101 ggttcgattc ggttcggagc caaagttctg aaagaaccga aacgcaagcg 151 acgtatgcgt tttgtcgtta tatcgttagg tagagcttaa agttgtcatc 201 ACCGTTGAAC ACTTTCCCGA GAAAAGCTCT CTCATCTTTT ATTTTCCCGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00734 Mean Expected Number 0.004 -strand -37 : -44 CAAAACGC AC RSP00874 Mean Expected Number 0.001 -strand -153 : -163 GTTTAAAGTGG AC RSP00940 Mean Expected Number 0.005 -strand +9 : -1 TTCaACGGTG AC RSP01210 Mean Expected Number 0.008 -strand -126 : -135 CTCTTTTAAG Totally 4 motifs of 4 different REs have been found Description of REs found 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G18920 |PROD: the same as GENE |6310066..6310848 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.31 C - 0.19 1 tagtggagct gaagtcattt gagacaacaa tctttgtctt ttgttcaact 51 tctactcttg gacttatcta catgttgacc acttatgcat gagactgaaa 101 gcttcttctt ataccaacta aacgggcctg ggctttaggt taaaaaactt 151 taaaagccca aaagaataaa ataactttcc gatttctgaa tcttcttctt 201 CTCTGCTGAA GAAACTAAAT TTCGCAGTGA AATGGAGAAA GTGACGGAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00233 Mean Expected Number 0.005 -strand +50 : +41 TCTcCGTCAC AC RSP00234 Mean Expected Number 0.003 -strand -44 : -53 GCTTTTAAAG AC RSP00628 Mean Expected Number 0.009 +strand -175 : -168 AACAATCT AC RSP01013 Mean Expected Number 0.006 +strand +29 : +38 gAAATGGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AWPM-19-like membrane family protein |LOCUS: AT5G18970 |PROD: the same as GENE |complement(6333213..6334638) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.30 C - 0.15 1 atggttatgg aatatattct ttaatttatt tgattaaatt ctgcaagaaa 51 ggtctaaacg aaaattgaag cttaggattt gattcttagt ccaaagttaa 101 ggacaaagta aagaATTGAa aacattgctt tcagcagaag gaacatctat 151 tcctatgaac tggatatata tcaatatata caaacatgac acacacagag 201 ATCTTGTGAT CATCCCAAGA CAAAACCAGA GAAAAAGACC TGTCTGTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.008 +strand -174 : -164 TATTTGaTTAA AC RSP00872 Mean Expected Number 0.009 -strand -6 : -15 TGTGTGtCAT Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: esterase/lipase/thioesterase family protein |LOCUS: AT5G19290 |PROD: the same as GENE |6494057..6495286 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.25 C - 0.27 1 ttgttcaacc ttttgcatcg tactaaaaca aattaagaaa aacagaaccc 51 caaaaagatt tgaaattgaa aacaaagcgg gcccaaaaat caggagtagt 101 tcgagcgtcc acactaaaag catgtgtccc aacaacacca gatcctatcc 151 tctcaattta tgaaacgtca ttaaatcctc tcaacggtta accaaacccc 201 ACACCTCACA TCCTTTTCTT TCCCCTTCTC TCAACCTTTT GGTGGAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand +41 : +35 CAAAAGG AC RSP00035 Mean Expected Number 0.008 -strand -186 : -192 CAAAAGG AC RSP00127 Mean Expected Number 0.006 +strand -125 : -120 AGCGGG AC RSP00385 Mean Expected Number 0.005 -strand -135 : -142 ATTTCAAA AC RSP00961 Mean Expected Number 0.003 -strand -184 : -191 TGCAAAAG AC RSP01499 Mean Expected Number 0.005 +strand +20 : +29 TTCCCCtTCT AC RSP01599 Mean Expected Number 0.008 -strand -136 : -143 TTTCAAAT Totally 7 motifs of 6 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G19370 |PROD: the same as GENE |complement(6524148..6526668) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.33 C - 0.17 1 agaggataat gtactttgta atgatgtata tcaattatca acatattttt 51 tgtcaacagc atacaatttg cggatttgaa tttaagttga tgacactaac 101 aaaaactact gaaaaagttc gaacacaaaa cactaatcag tatttgtgga 151 tcagaggccc atattattca gtcttctttg agtggttaac ttgtaaattt 201 CTCTCACACT TGGACTCGTT ACCCAAAAGA ACCCATAATG TTTAGAGTGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00756 Mean Expected Number 0.002 +strand +3 : +10 CTCACACT Totally 1 motifs of 1 different REs have been found Description of REs found 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G19380 |PROD: the same as GENE |complement(6526830..6530594) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.27 C - 0.19 1 tgggtcaact agtcaaatag cccaaacaac atgatcaaaa aagttgggtc 51 aatggtacaa tgttacgttg aatttccata tatataataa aatactatct 101 gaaaatacac gaaaactatt attcatttga cgaaaatacc cttttgacac 151 cccaaaagcc tctgctattt taatcacact tctctaaaca gctatggagt 201 GCTCAAAAGA AATTGTGATA CGCGAAAGAA AGAAAAAAAT TACTTTCAAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.007 -strand -55 : -61 CAAAAGG AC RSP00039 Mean Expected Number 0.005 +strand +8 : +18 aGAAATTGTGA AC RSP00559 Mean Expected Number 0.008 -strand -92 : -102 TGTAtTTTCAG AC RSP00860 Mean Expected Number 0.008 +strand +27 : +35 AGAAAGAAA AC RSP01014 Mean Expected Number 0.004 -strand -72 : -81 CAAATGAAtA AC RSP01056 Mean Expected Number 0.002 +strand -142 : -132 AATGTTACgTT AC RSP01621 Mean Expected Number 0.006 +strand -64 : -55 TACcCTTTTG Totally 7 motifs of 7 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cinnamyl-alcohol dehydrogenase, putative (CAD) |LOCUS: AT5G19440 |PROD: the same as GENE |6556422..6558344 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +73 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.31 C - 0.16 1 agaggatttt ggatatatga ttttatcttt tgaagtatta taatgttctt 51 ttctgtttta aaatgaattg actattgagt ttgaagtgaa attggaattg 101 actactcaac aacgtgtgtc tcttttccac ctaaccATTG Tgcaaaccac 151 gcaaaaggaa aaatatcaaa aaagtcttta aagagggcaa agaaatcacc 201 CAAATATACG CATTCGTCAT TTGGTCCCTC CACTTAGAGA GAAGCAGACA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00280 Mean Expected Number 0.005 +strand +29 : +38 TCCACtTAGA AC RSP00889 Mean Expected Number 0.004 +strand -54 : -48 CCACGCA Totally 2 motifs of 2 different REs have been found Description of REs found 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G19540 |PROD: the same as GENE |6595704..6597891 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.33 C - 0.19 1 tatagattta tgaacaagga atagaccata ttttactctc ttggtttaga 51 actggtttgg ttaaatcata ttcagttatt tggttcggtt tactaagtaa 101 ttcaccgaat ttttttttgt ggccgaagta gaaacgtgta aacttcctct 151 ggttgaaaaa tggcgaaata tcttctccac atcacacact agttcttctt 201 CTGCTCAATC TCAACTATCC CGTAAAACAA AAACGAGGGA GGAACCATGG 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G19630 |PROD: the same as GENE |complement(6627978..6629997) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.41 C - 0.09 1 aaatatataa atttattagc caattattac tatataaata tattgatttt 51 taaaagtaaa gaactttttt tgcaagtatt agtaatctat atatatatat 101 atatatatat atatatatat atatatatat atatatatat atATTGAgaa 151 aattttggct tcgtgctagt ggagtagtgg ttatcaacat attaataact 201 CTGGAAGAAG TGTAAAACAA AAAAGTTCCT TACTTGTTCA TTCGTCGTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00492 Mean Expected Number 0.000 +strand -120 : -79 AgtaATcTATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -118 : -77 taATcTATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -116 : -75 ATcTATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -114 : -73 cTATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -112 : -71 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -110 : -69 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -108 : -67 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -106 : -65 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -104 : -63 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -102 : -61 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -100 : -59 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -98 : -57 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 +strand -96 : -55 ATATATATATATATATATATATATATATATATATATATATtg AC RSP00492 Mean Expected Number 0.000 +strand -94 : -53 ATATATATATATATATATATATATATATATATATATATtgAg AC RSP00492 Mean Expected Number 0.000 +strand -92 : -51 ATATATATATATATATATATATATATATATATATATtgAgAa AC RSP00492 Mean Expected Number 0.000 -strand -51 : -92 tTcTcaATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -53 : -94 cTcaATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -55 : -96 caATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -57 : -98 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -59 : -100 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -61 : -102 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -63 : -104 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -65 : -106 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -67 : -108 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -69 : -110 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -71 : -112 ATATATATATATATATATATATATATATATATATATATATAT AC RSP00492 Mean Expected Number 0.000 -strand -73 : -114 ATATATATATATATATATATATATATATATATATATATATAg AC RSP00492 Mean Expected Number 0.000 -strand -75 : -116 ATATATATATATATATATATATATATATATATATATATAgAT AC RSP00492 Mean Expected Number 0.000 -strand -77 : -118 ATATATATATATATATATATATATATATATATATATAgATta AC RSP00492 Mean Expected Number 0.000 -strand -79 : -120 ATATATATATATATATATATATATATATATATATAgATtacT AC RSP01614 Mean Expected Number 0.001 -strand -129 : -141 CaAAAAAAGTTCT Totally 31 motifs of 2 different REs have been found Description of REs found 468. Group RE: Zc2 A/T-2 /AC: RSP00492//OS: Zea mays /GENE: Zc2/RE: Zc2 A/T-2 /TF: unknown 1434. Group TF: GmDof4 /AC: RSP01614//OS: Glycine max /GENE: Synthetic OLIGO/RE: accD P-box /TF: GmDof4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: leucine-rich repeat family protein |LOCUS: AT5G19680 |PROD: the same as GENE |6649610..6651937 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.31 C - 0.21 1 tgttgtgtga gtaatgaata gctacaaagt tgactctacc tttgtaaata 51 ttgactcata attttgttct aattcgactt gatgttgggc ctattcatag 101 gttttcaggc ccaccataac aaccctacag gcaACAATgt tacaagtgtg 151 cctgaaacgt tgacgtttaa gtttaagaga acttcgcttt agagtttaga 201 CCAGTTCCCC ACAAAGCTCG TTGTCGTCAT CGCGCGAGCT TGAACCAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.007 +strand +20 : +29 gTTGTCGTCA AC RSP00188 Mean Expected Number 0.004 -strand -38 : -47 TCAACGTTTC AC RSP00918 Mean Expected Number 0.005 +strand -42 : -33 GTTGACGTTt AC RSP00969 Mean Expected Number 0.002 -strand +30 : +21 aTGACGACAA AC RSP01636 Mean Expected Number 0.001 -strand -7 : -17 CTCTAAAGCgA Totally 5 motifs of 5 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 182. Group TF: ABI5 /AC: RSP00188//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.2 /TF: ABI5 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: dicarboxylate/tricarboxylate carrier (DTC) |LOCUS: AT5G19760 |PROD: the same as GENE |complement(6679115..6681993) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.30 C - 0.15 1 tgtcaaatct aaaattcata tgaatgcgta ataaataact ctaaatattt 51 ggattgcgta aaatccgaat ggtgaaaagt aaagtccaaa ttaataaatt 101 tagaaaatat gtctggctta gatcagatct catatgcaaa tggaaaaaaa 151 taaaaattaa aaaggcaagg gtttggtgca atttagtttc agttgggtgg 201 TGTTAATATA AAAGGCCCAT AAGCTTCACA CTTCATCGTC TCCTCTCCAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand -110 : -95 TTAaTAAATTTAGAAA AC RSP00085 Mean Expected Number 0.006 -strand -95 : -110 TTTCTAAATTTAtTAA AC RSP00997 Mean Expected Number 0.002 -strand +37 : +28 GATGAAGTGT AC RSP01006 Mean Expected Number 0.003 -strand +1 : -6 ACCACCC AC RSP01013 Mean Expected Number 0.009 +strand -64 : -55 CAAATGGAaA Totally 5 motifs of 4 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G19855 |PROD: the same as GENE |complement(6711974..6713582) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.34 C - 0.24 1 gacgacaaga aatacacctt attttaggga ggcgtccacg taaacccgaa 51 agcccacccg gtgcttttct tgtttgtctt tgcctttgcc tctgcttgct 101 aggaaaaata aataaatatc acaagtccct gattttgact ggctaagatt 151 caacggccat tttccatctt acagacccaa ttcttgtttt ctgttttgct 201 ATAACAAACC AGGGTCAGGG TTTTATCTTC CATATTCTTT TCCCACTGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00280 Mean Expected Number 0.006 +strand -166 : -157 TCCACGTAaA AC RSP00879 Mean Expected Number 0.006 +strand -154 : -148 CGAAAGC AC RSP01073 Mean Expected Number 0.001 -strand -103 : -111 CAAGCAGAG Totally 3 motifs of 3 different REs have been found Description of REs found 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 991. Group TF: PvAlf /AC: RSP01073//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em2b /TF: PvAlf ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G19875 |PROD: the same as GENE |6718343..6718997 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.07 T - 0.29 C - 0.25 1 caattattaa tacagaatta cgaacaccca tatgatcata tccacgtggt 51 ctcgaccgac cacttcaaaa accaaaaagc cctgaaatat tttaatctat 101 taataacgta aaatataaca cccattcaaa gcatactctt ttcttctctc 151 caaagataat ctacacttct ttatatatgt acacacacac atatagagac 201 ATCTAGATTT CACTTACACA TTCTAAAACA CCTAGACCTT TATCAAAACC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00010 Mean Expected Number 0.009 +strand -158 : -153 CACGTG AC RSP00010 Mean Expected Number 0.009 -strand -153 : -158 CACGTG AC RSP00153 Mean Expected Number 0.001 +strand -159 : -150 CCACGTGGtC AC RSP00682 Mean Expected Number 0.000 -strand -151 : -160 aCCACGTGGA AC RSP00718 Mean Expected Number 0.000 +strand -159 : -152 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -152 : -159 CCACGTGG AC RSP00953 Mean Expected Number 0.010 +strand -200 : -192 CAATTATTA AC RSP01734 Mean Expected Number 0.009 +strand -160 : -154 TCCACGT Totally 8 motifs of 6 different REs have been found Description of REs found 10. Group RE: G-box /Group TF: TAF-1 /AC: RSP00010//OS: Catharanthus roseus /GENE: Str/RE: G-box /TF: TAF-1 ||Identical REs AC: RSP00134 RSP00302 RSP00390 RSP00657 RSP00726 RSP00786 RSP00815 RSP00957 RSP01471 RSP01532 RSP01533 RSP01534 RSP01749 RSP01770 RSP01782 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: integral membrane family protein |LOCUS: AT5G19930 |PROD: the same as GENE |complement(6737585..6739350) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.28 C - 0.26 1 ccgcgttatc tcgtctgtcc cattccgcaa atctaataaa tggcccacga 51 ctacatggtc tagattagat taatatttgt tttagcaaat ctattgggtc 101 agcccatttg aggcccatgt tttgagacca ggtccgagcc tgcgtaacta 151 acatgtaacc aacacttgaa atacatcaaa tcagtgaaga cgttggggtc 201 AACTACCCTC TCCCCGACGC TGAACTGAAT CTTCGTCGTC AACAGATTCT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G19940 |PROD: the same as GENE |6739626..6740984 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.29 C - 0.25 1 tcaaaacatg ggcctcaaat gggctgaccc aatagatttg ctaaaacaaa 51 tattaatcta atctagacca tgtagtcgtg ggccatttat tagatttgcg 101 gaatgggaca gacgagataa cgcgggagag aatCCAATca ccgattgagc 151 tatgggcccc agtatcgatt tctactatga cgtggcacca cttaaatcac 201 AATATCCGTA TTCCCTCTCT CTCTCCCTTT CTATCTGAGC TTCTCTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -23 : -15 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -23 : -16 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -16 : -23 CCACGTCA AC RSP00232 Mean Expected Number 0.008 -strand -18 : -27 ACGTCATAGt AC RSP00248 Mean Expected Number 0.004 -strand -15 : -24 GCCACGTCAt AC RSP00653 Mean Expected Number 0.004 +strand +41 : +51 TTCTCTCTCtT AC RSP00819 Mean Expected Number 0.003 -strand -15 : -24 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 -strand -15 : -24 GCCACGTCaT AC RSP00864 Mean Expected Number 0.002 -strand +50 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +24 : +16 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +26 : +18 GGAGAGAGA AC RSP01034 Mean Expected Number 0.008 +strand -21 : -15 ACGTGGC AC RSP01275 Mean Expected Number 0.003 -strand -15 : -24 gCCACGTCAT AC RSP01656 Mean Expected Number 0.000 +strand -25 : -14 TaTGACGTGGCA Totally 14 motifs of 13 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RPT6A |LOCUS: AT5G20000 |PROD: 26S proteasome AAA-ATPase subunit, putative |6756635..6759751 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +282 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.38 C - 0.10 1 aacccgtcta atttttatta ctaaaaatga agagagaatt gtattaacag 51 aatttaaatt aaagggtatt tttacaatca tctttagtcg agtggtttta 101 ttactaaaaa ctttttttta aaatacaaat gtttatGCAA Taatatggtt 151 tattcggtgt ggttttagtt gggttaccca aaaaagtttt aataataggc 201 TTTAGTTGTG GTTTTGGTAT TGCAGACATT AAAAATAACA AAACCAAGCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.009 +strand -156 : -149 TAACAGAA AC RSP00716 Mean Expected Number 0.000 +strand +39 : +47 CAAAACCAA AC RSP01209 Mean Expected Number 0.003 -strand -15 : -24 CTTTTTTGGG Totally 3 motifs of 3 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RAN-1 |LOCUS: AT5G20010 |PROD: Ras-related GTP-binding nuclear protein (RAN-1) |6760286..6762096 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.22 C - 0.28 1 aaaaggaaag aaaaatcaat gccgatgaat gagtacgcgt ggacctaaag 51 ctagaaaaag atccaacggt ggagaaagct gcgttaaaat tgcagaagaa 101 ccaaagagaa agaatccaac ggCCAATagt gtagcgtcaa ctcaaagcca 151 aaccctccca aatttctctt ttaaaaaccc caatctctct ctccctctcc 201 ATCTTCATTC TCCCTCTCGC CGCTTCCTTC TTAACACCAT CGCCTGAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -68 : -78 TACACTaTTGG AC RSP00864 Mean Expected Number 0.001 -strand -9 : -17 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -7 : -15 GGAGAGAGA AC RSP01497 Mean Expected Number 0.005 -strand -78 : -87 GCCGTtGGAT AC RSP01711 Mean Expected Number 0.004 +strand -150 : -141 CTAGAAAAAG Totally 5 motifs of 5 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1519. Group TF: RIN /AC: RSP01711//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC Others /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: agenet domain-containing protein |LOCUS: AT5G20030 |PROD: the same as GENE |complement(6764729..6766671) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +633 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.41 C - 0.14 1 atagtcccat atcaaataaa atgaaacaaa aaggctattt ctcatgcaac 51 ttgaaatatt ctcttcttca ttttcttaaa aatattttca tttaaaaaat 101 gatttttggc ttgctgctgc tgatgtggaa tatacattta tcttttttgt 151 tccttttgat aattatttgc atatacgttt ttaattttgt tttatttgcc 201 CTTTTGATCC AAGTTTGGTT GCCCAGAAAT ATCAAAGAAA AAAAAACAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.003 +strand -32 : -23 GCAtATACGT AC RSP00107 Mean Expected Number 0.009 +strand -158 : -152 CATGCAA AC RSP00915 Mean Expected Number 0.001 +strand -82 : -73 GCTGATGTGG AC RSP01715 Mean Expected Number 0.002 -strand -19 : -30 AAAaACGTATAT Totally 4 motifs of 4 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1523. Group TF: STF1/HY5 /AC: RSP01715//OS: Arabidopsis thaliana /GENE: ARF6 (At1g30330)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATIPT9 |LOCUS: AT5G20040 |PROD: |complement(6767809..6771172) |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +190 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.20 1 atttaaattt tcgaatatat agatggatcg aaccggtcga atcctaccag 51 cccgaccata aaaaacctaa tcataggacc ctgtaattga tcaaaaacca 101 tatgtaATTG Ttccattttt tggttgtgta agtaattaac acgacatgat 151 aacatcgttt ataactgtct aggtttaagt aaaccgttta atttcggttc 201 GCTTGTTCGG TTTATGTGTA AACCTAACCG AACCGTAGTT CTCTAATCCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01237 Mean Expected Number 0.009 -strand -177 : -186 aTCTATATAT Totally 1 motifs of 1 different REs have been found Description of REs found 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: protein kinase family protein |LOCUS: AT5G20050 |PROD: the same as GENE |6774304..6775847 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.40 C - 0.14 1 ctatatttga ccttgaattc atccaaaatt atctcagatt ttaaatattt 51 cttttcgatt ttgacattta caaaattaga taattcaaaa tacggaattt 101 ctcgttagca aaattatgac ttttttttta tattatttca actaaaaaat 151 aacagaaaaa gataaaatac aagtccctgt atattttttg gtcttagttt 201 GAAATATTTC GTCTTTGTTC TCGTCACCAG AGTGCTTATC TGAAAGAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.008 +strand -51 : -44 TAACAGAA Totally 1 motifs of 1 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phospholipase/carboxylesterase family protein |LOCUS: AT5G20060 |PROD: the same as GENE |6776169..6779616 |SUPPORT | 9 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +633 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.18 1 tagaagaaag tcaatgaatc ttaaaccgaa tttggtcggt caaagtaaac 51 cgaatctccc aattctatta ttgaagaaga aactgataaa aacaaaaggt 101 ttggggagaa agtgaaaaga acaaaaacat gaaggacgct aaggcaaaca 151 aaaagtgcaa tccacatcag aatttatgga ttgcttgctg ctagaaagct 201 CTGTTTCTTT TTGCTTCCTT AGACTTCTCC GTCGATTAAC CCTTGCCGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.003 +strand -121 : -110 AAACtGATAAAA AC RSP01526 Mean Expected Number 0.000 -strand -163 : -174 CGACCAAAtTCG Totally 2 motifs of 2 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1374. Group RE: Box II /AC: RSP01526//OS: Pisum sativum /GENE: PsCHS1/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NADH-cytochrome b5 reductase, putative |LOCUS: AT5G20080 |PROD: the same as GENE |6782568..6786659 |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +142 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.37 C - 0.16 1 attttgaatt gctgagtcct aagtgtgtgg acttcgctcg aagttatttc 51 tttgcaacga cgatttagat caataaaaat taatcaaaga ttgacctcaa 101 taaatttgag ttttatagtt cgtttttctt tagtggctgt gttcttctaa 151 atcagatgtt tactgcttct tcctaatgtt cttgttgtaa aacaaaaaaa 201 AAAAGTTAAC AAATGAGAAT TCCACTGTTC TTAGAGTACA CATCTCCATA 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, contains Pfam domain |LOCUS: AT5G20090 |PROD: the same as GENE |complement(6787004..6788656) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +654 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.15 T - 0.42 C - 0.18 1 tttttcgctt cttgaaaatt gctttagtgc ttttattttg tttatctcag 51 cttgtattta attctaaagc tgattagtga ttactagtac attttgtgag 101 tgacattttc ctaggatttt atatctccgg tttggctaac cgaaccgacc 151 atatccatta attaatatat tttcatttgg caaaaaagta aacgaagccc 201 AAACCCATTT AGCTTTTGAC TTGTGTTGTT CTTCGTCGCT CTGTCTTAAT 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SPX (SYG1/Pho81/XPR1) domain-containing protein |LOCUS: AT5G20150 |PROD: the same as GENE |6802374..6803627 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.31 C - 0.19 1 tgagttgtga ttgatattta tgaactgaca taggcatgtg ttataatctc 51 acccacagat aaccacgaaa aagtaataaa taagaaagga ataaaaggaa 101 gatattctcc cgaaagaaag acagagaaaa aaggatattc taattagaaa 151 ccttaagaat attcttttta atccctttta tatctctaaa cctcttcccc 201 CTCTCTTTCT TCTTCATTCA TCATTCTCAC TTAAGTTTCC CAGAAAATAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.010 +strand -133 : -122 AAAAAGTAAtAA AC RSP00163 Mean Expected Number 0.001 -strand -67 : -77 CCTTTTtTCTC AC RSP00228 Mean Expected Number 0.002 +strand +20 : +31 ATCATTcTCACT AC RSP00861 Mean Expected Number 0.001 -strand +10 : +2 AGAAAGAGA AC RSP00862 Mean Expected Number 0.001 +strand -118 : -110 AGAAAGGAA AC RSP01499 Mean Expected Number 0.002 +strand -6 : +4 TTCCCCcTCT Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc knuckle (CCHC-type) family protein |LOCUS: AT5G20220 |PROD: the same as GENE |6821992..6825983 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +218 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.35 C - 0.12 1 tataaaaata aaaggttaat cgagatttat aggtcgaaaa tgtcatttga 51 ttactttaaa ataatactaa ctttttacgt tttaagtatt ttctctcgta 101 tatccttaat gttggaagaa tttgATTGGt gaaagcagag ttgtagcaat 151 ataaaattga tgtaattagc agagtttgtg gtgggttcga attagagaac 201 AAAAGATATG CCACGTTATA TCGTCCCCGC GTATTAGCCA CAATCTATCG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 -strand -118 : -129 AAAAcGTAAAAA AC RSP01034 Mean Expected Number 0.002 -strand +16 : +10 ACGTGGC AC RSP01086 Mean Expected Number 0.007 +strand -127 : -118 TTTACGTTTt AC RSP01598 Mean Expected Number 0.010 +strand -160 : -153 TGTCATTT AC RSP01733 Mean Expected Number 0.006 +strand +27 : +32 CCGCGT Totally 5 motifs of 5 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PI |LOCUS: AT5G20240 |PROD: floral homeotic protein PISTILLATA (PI) |6829123..6831456 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +82 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.30 C - 0.25 1 aaaaaaggag agaaaataga gttggctatg tgtaataagc gaaccaaaag 51 caagccttcc atgactgtgc cctcaagaaa gtagctttgt tttcaatccc 101 aaactgtcaa agtctctctt cacctcaaga ttaatcaaaa catttctctc 151 tctatctcat caatgttact ttaaaaccaa tgctcctctt cttgttcttc 201 ATATAAACCA CATATCCTCT CCTCCATATC TTAACAATTT CATAGCAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.000 -strand -185 : -195 TTtTCTCTCCT AC RSP00850 Mean Expected Number 0.008 -strand -175 : -180 GCCAAC AC RSP00864 Mean Expected Number 0.002 -strand -48 : -56 AGAGAGAGA AC RSP01056 Mean Expected Number 0.003 +strand -39 : -29 AATGTTACTTT Totally 4 motifs of 4 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, contains Pfam domain |LOCUS: AT5G20270 |PROD: the same as GENE |complement(6840835..6842860) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +202 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.30 C - 0.21 1 gtaaaactga atcacttttc ttgttaaaaa aaaatacaat aaaaacaaac 51 gtaagagaaa gggaaatgaa ataataataa tcaaaaaaga agaatttatt 101 gataacctaa ctaacaacta aaagatgaaa acacgacacc aacttctacc 151 tgcatactaa agtttcgtct ttaaatgttg cagctgtctc cttacatttc 201 ACATCTTCCT TGTTTCTTCT CTCTCTCTCT CTCCCCTCAA ACTTAAATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.009 +strand -64 : -55 CACCaACTTC AC RSP00864 Mean Expected Number 0.001 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +30 : +22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +28 : +20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +26 : +18 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +34 : +26 GGAGAGAGA AC RSP01017 Mean Expected Number 0.003 -strand +17 : +10 AGAAACAA AC RSP01283 Mean Expected Number 0.000 -strand +33 : +17 GAGAGAGAGAGAGAGAA AC RSP01776 Mean Expected Number 0.005 -strand -23 : -33 ACAtTTAAAGA Totally 9 motifs of 6 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S8 (RPS8A) |LOCUS: AT5G20290 |PROD: the same as GENE |complement(6851483..6853065) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.30 C - 0.23 1 ttttttttac gattttcttc aaccaaaaca atgaaataac acacaaaatt 51 attatcacta gaccaaattt tatttataac ataaaacggc cggaagctga 101 tgcttcatgg gcttggccca aaggccggct ctggatgggc cagatgataa 151 cctagggttt atactcccta tatatttata tttaagctct tcgttcactc 201 CTCTCAACTC CGCGCAGCTA AACTTTATTG GAGAAACCCT AATCGGCGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +42 : +34 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +34 : +42 AAACCCTAA AC RSP00297 Mean Expected Number 0.000 +strand -86 : +41 GGCCCA-- ** bp --ACCCTAA AC RSP01237 Mean Expected Number 0.009 +strand -35 : -26 CcCTATATAT AC RSP01303 Mean Expected Number 0.006 +strand +33 : +42 gAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glutaredoxin, putative |LOCUS: AT5G20500 |PROD: the same as GENE |6938600..6940269 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.29 C - 0.20 1 atactccaaa aatgttctat gtttttgaag cccagtaaaa aataattgtt 51 tttgttaagt tcacccaatt tatgtaatag tggttgggct gaaacaataa 101 ccttgatttt gggctttaat acgaccctta tttagatggg ccgggttaaa 151 ccgtacccgc cacaacacac ctacacctac tttccacagt atcgatcctg 201 CAAGTCATCG TCTTCAATTG GCATCTGAAG AAGAAGAAGA AGAAGAAAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.006 -strand -191 : -198 TTTGGAGT Totally 1 motifs of 1 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: WAV2 |LOCUS: AT5G20520 |PROD: expressed protein |complement(6943156..6946451) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.27 C - 0.19 1 gtcatatttg agtattgttg gtggactcgc aaatgaacaa tttagaccac 51 caaatagagc tacattttct tatggtgaag actcaaaatc ggtttgggtt 101 tagcgcatag atgggcttta gtttcggccc agtgaaactc tgtcTCAATc 151 cttctcacct gtaaacttaa aaaaagaaac gaagaagctc tttttctccc 201 CTCTGAAGAA GAAAAGCAAA ATCCACGAGA GAAACAGATA GAAAGTTGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01602 Mean Expected Number 0.004 +strand -58 : -51 TCTCAATC Totally 1 motifs of 1 different REs have been found Description of REs found 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: oxidoreductase |LOCUS: AT5G20550 |PROD: the same as GENE |complement(6952419..6953883) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.33 C - 0.13 1 tattgaagga agaggaattt ttttggaaga aaacaagtct aggaagttcg 51 taaaaattat tgaaaatcaa aagatatctt tttttttttc cagcaacgtg 101 cttcttctgc attttaaaat agcgttgtga gttgtgactg tttgctttgg 151 gtttagaaaa ttggaaaata gtcaacttgc tctgtagtcc ttaaacgctc 201 ATCAGATTCA AGATCAGTAG TAACAATGGA GAAGCCAAAG TTCAAGACTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00357 Mean Expected Number 0.005 -strand -67 : -74 CAACTCAC AC RSP00866 Mean Expected Number 0.001 -strand -100 : -107 GCACGTTG AC RSP00949 Mean Expected Number 0.003 +strand -32 : -25 TAGTCAAC Totally 3 motifs of 3 different REs have been found Description of REs found 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 802. Group RE: G-box /AC: RSP00866//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: G-box /TF: unknown 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RBX1 |LOCUS: AT5G20570 |PROD: ring-box protein-related |complement(6956662..6958313) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.28 C - 0.19 1 caattaaata aataaaaatc gttgggataa taaaggaaaa attaaaatat 51 ttatgtaaat cgtaggatga gtaagattaa aaaaaggaaa ccttaaaccg 101 aattatggaa atttacggga atctaattcc gacgaaagcc cactatacag 151 gcaaagccca aagctgcttt atatatctct cttcttcttc ctctacaatc 201 TCTCTCTACA ACAAAATCAG CGACAGCTCA AACGTTGATA TTTTTCTCCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00255 Mean Expected Number 0.000 -strand -129 : -137 ACTCATCCT AC RSP00864 Mean Expected Number 0.001 -strand +7 : -2 AGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, various predicted proteins |LOCUS: AT5G20590 |PROD: the same as GENE |6963440..6966607 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.35 C - 0.16 1 gcagatctaa cactcccata ctaaacattt gtacatagag tttagttttg 51 atacatttca ttcacttatt gaccaaattt agtatagaca tatatataaa 101 cagtactcga aatttagaat ttacctgatt tggtagaaaa catttgtgaa 151 ttcacgagaa tttgtgttat ttattacctt aataacatag aaaatgattg 201 AACACATATA ATTTGACCAA AGTCGCATCT CACGGTGAGA TGAGTTCTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01741 Mean Expected Number 0.000 +strand -135 : -123 TTATTGACCAAAT Totally 1 motifs of 1 different REs have been found Description of REs found 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: COPT5 |LOCUS: AT5G20650 |PROD: copper transporter family protein |complement(6985300..6986039) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.31 C - 0.18 1 tagaaaaaat cagcttgatg atgatgacga cgaagacgag attttttttt 51 ttttttttga caacaaagga agagttgatt acaaatgccc cttagattgc 101 acttatttac gtaaatacca ctttgacttt ttagcggcag tagctgcact 151 aaaatatatg aagccttgtg ttattgtaag cccactggac tataatgtga 201 GCCCACGAAG AAACGTATCT TCTAATCAAT AATTCAACAA ACCAAACCTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: auxin-responsive protein-related |LOCUS: AT5G20820 |PROD: the same as GENE |complement(7046753..7047398) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.35 C - 0.24 1 cataatcttt tcgaataatt gcttccggct cttggaaact tttagatcat 51 tggataatgg ctattcaaaa atcggttgat aacctaaacg ttctcaaact 101 tattaaaacc atgaaattat actgaaaata ataatactat aattacgaat 151 ctacccttag caagttatat aagaacatca ttctcctttc tctcttcgac 201 ATCGACATTC CTCTTCCTCG CTTCTCTCTC TCTCTCTCTC TCACCGGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00400 Mean Expected Number 0.008 +strand -128 : -123 CGGTTG AC RSP00864 Mean Expected Number 0.004 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 -strand +31 : +23 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +42 : +26 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +40 : +24 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +38 : +22 GAGAGAGAGAGAGAGAA Totally 10 motifs of 3 different REs have been found Description of REs found 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phosphoinositide phosphatase family protein |LOCUS: AT5G20840 |PROD: the same as GENE |complement(7061105..7069221) |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +647 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.35 C - 0.20 1 actggaaaac tggataaaga gagaaagaga gagagtacat aacataagtc 51 ctcgaaagtg cagctattcc attagcggcc agacagctgt tagtatatat 101 tgcttcgtca cgggctcttt ttttttcttt ttaatttaaa gatcccttaa 151 aaaaatcttt tttgttttaa agaagagaga aattgtggtt ttgttgcgtc 201 GTCGTCGTCG TCTCTCTCTC TCTCTCTTCC CCGATCCAAT CTTCTCCTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00629 Mean Expected Number 0.008 +strand -50 : -43 AAAAATCT AC RSP00653 Mean Expected Number 0.001 -strand -20 : -30 TTCTCTCTtCT AC RSP00861 Mean Expected Number 0.001 +strand -179 : -171 AGAAAGAGA AC RSP00864 Mean Expected Number 0.000 +strand -175 : -167 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +19 : +11 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +26 : +10 GAGAGAGAGAGAGAGAc Totally 10 motifs of 5 different REs have been found Description of REs found 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: chaperonin, putative |LOCUS: AT5G20890 |PROD: the same as GENE |complement(7086655..7090083) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +175 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.37 C - 0.17 1 ttcctctata taatcaaaca aaatgcaaaa ttgtcgaaac tataaaattt 51 acttcttaat gtaacttata actttttggt taagggttaa tctaaacttt 101 ttagttttta ctgaagggcg cataagaaat ctgggaaata cgagggtagt 151 ttggtcttta cgagtttcat ttagggttcc gaaagatctg ggttttggct 201 CTCTCCTCTC ATTTTCTACT CTTCTTCAAA AGCACACTCA ATATTTCGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00867 Mean Expected Number 0.000 -strand -79 : -86 TGCGCCCT AC RSP01091 Mean Expected Number 0.006 +strand -193 : -183 ATAtAATCAAA AC RSP01304 Mean Expected Number 0.003 -strand -21 : -30 gGAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 803. Group RE: GCC-box /AC: RSP00867//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: GCC-box /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: EIF2 BETA |LOCUS: AT5G20920 |PROD: |complement(7094721..7097117) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +454 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.29 C - 0.14 1 aaataataaa tgagaatctc agtgtcaatt aatagataaa attaaaatgt 51 aacatgcgtt aagaaaaaga aaaaagtaaa aatgtaatat taaggtttag 101 gcaaaatgaa atatttacag agacctttta ctATTGAatt aaaaaaaaaa 151 gttacaattc gagatggact atttttttgg aggagcaagg gttaactctt 201 ATCTCAGATT AAAACAACCC CTGCGCCGCT TACTCTCTCT CAGATTCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.002 +strand -130 : -119 AAAAAGTAAAAA AC RSP01054 Mean Expected Number 0.003 +strand -53 : -43 AAaGTTACAAT AC RSP01735 Mean Expected Number 0.001 -strand -182 : -190 AGATTCTCA Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATBPM5 |LOCUS: AT5G21010 |PROD: speckle-type POZ protein-related |7136013..7138683 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.35 C - 0.20 1 cagacttaac gctgcaaatg actaactttg atccaatgag gaaggatgat 51 gttttctcca cttgaatata tggtttgtga catagtacta agattatttg 101 atactagcta aagcctctgt ctcagataga ggtgtctccc tgtttccttt 151 aactcaacaa cactttgcca attttgactt ctttcttctt ctttttctgc 201 ATAACCTATC AATTAGATAC CATTTAGATT AGCAGCGAAT TTCAAACGGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00872 Mean Expected Number 0.008 +strand -127 : -118 TtTGTGACAT Totally 1 motifs of 1 different REs have been found Description of REs found 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: homoserine dehydrogenase family protein |LOCUS: AT5G21060 |PROD: the same as GENE |complement(7148980..7152866) |SUPPORT | 12 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.34 C - 0.17 1 ttagttggaa ttcatctcaa tttttttcgg ttttgttgtg ttataacgat 51 aaaaagcgat ttgtgtaatt gttatcaaag tataattgtt atcaaacgct 101 aataatacta atcgtatgca aatatagcgt ttgtaagtaA TTGCggaaga 151 accaatctag tagcctttga cacccgaaac gcctggctac gattacacgc 201 GTTTCCGAAA CGTTGGGCTT TGCTTAGCTG CGACATTTTC AGTGAACGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00521 Mean Expected Number 0.003 +strand -31 : -25 ACACCCG AC RSP00523 Mean Expected Number 0.004 +strand -6 : +1 ACACGCG AC RSP00751 Mean Expected Number 0.002 -strand -168 : -179 AAACCGAaAAAA AC RSP01093 Mean Expected Number 0.003 -strand +28 : +18 gCTAAGCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 5'-AMP-activated protein kinase beta-2 subunit |LOCUS: AT5G21170 |PROD: the same as GENE |7205565..7208494 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.37 C - 0.20 1 tcattatcct tctcaaaggc attgaaccaa ctttttattc acatttgttt 51 attatatact aaaagaaata aacaaaaaaa aagtggataa ttataaactt 101 ttggacgcca agtcactcgt ttatccattt ggtacggatt ttaatgatat 151 ctctctctca agagcccctt ttatgcaaaa tctctttttc gctaccaatg 201 GCATTATTCG TAATTAACTT CTAACTTGAG GGGCGTTTCA TTATCTCCTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.006 -strand -112 : -118 TATCCAC AC RSP00270 Mean Expected Number 0.003 +strand -107 : -97 TAaACTTTTGG AC RSP00543 Mean Expected Number 0.010 +strand -184 : -178 AGGCATT AC RSP00864 Mean Expected Number 0.003 -strand -43 : -51 AGAGAGAGA AC RSP01469 Mean Expected Number 0.009 +strand -162 : -153 TCACATtTGT Totally 5 motifs of 5 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (ZPR1-type) family protein |LOCUS: AT5G22480 |PROD: the same as GENE |complement(7451508..7456688) |SUPPORT | 17 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +517 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.35 C - 0.21 1 tagtaacaat tttttttttt aaaaagatag taaaaactac gaacatcatt 51 ttacaataga ctatagtcta tatcgtcgaa atcggatatg gtcaattttt 101 agttcgtgta taatttgacc tattttccct cgttttcaac aaaaacgacg 151 tcgtacgaac gaaccctaaa atctcgagca gcagagccaa agctagattt 201 GATTCCCTCT CTTCGATTTT TAATTCCTTG CTCCTCTGCT CGTTTCTCTA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 +strand -112 : -103 TGGTCAATTt AC RSP00501 Mean Expected Number 0.002 +strand -26 : -20 CGAGCAG AC RSP00501 Mean Expected Number 0.005 -strand +42 : +36 CGAGCAG AC RSP00750 Mean Expected Number 0.005 -strand -142 : -153 cTATTGTAAAAT AC RSP00943 Mean Expected Number 0.008 +strand -155 : -145 TCATTTtACAA AC RSP01304 Mean Expected Number 0.004 +strand -41 : -32 cGAACCCTAA AC RSP01596 Mean Expected Number 0.008 -strand -145 : -155 TTGTaAAATGA Totally 7 motifs of 6 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: protein kinase family protein |LOCUS: AT5G22840 |PROD: the same as GENE |complement(7630720..7633226) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.10 T - 0.41 C - 0.21 1 tactatctca caattctatt ttgttcatca tacttccgta cactcttact 51 cagacagagt caacgaaagc cctaatcttt cttatctgac acaaacacta 101 actcgtgttt cataatttat ctgttattaa tgttatgctc aaattaggta 151 atttatcaat taatctcttt ttttatttgg tcgtcttcta aaaatctcca 201 ACTTTCTTCT CTTCCATAGA ACCTCAAATT TCTAGGGTTT TAGGGGTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.005 +strand +39 : +45 TTTAGGG AC RSP00445 Mean Expected Number 0.009 -strand -28 : -37 AAAAAAGAGA AC RSP00879 Mean Expected Number 0.002 +strand -137 : -131 CGAAAGC Totally 3 motifs of 3 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: serine carboxypeptidase S28 family protein |LOCUS: AT5G22860 |PROD: the same as GENE |complement(7639359..7642987) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.34 C - 0.18 1 ttttctgaaa accatagaac ttatattaga ttgcattccc tatataagta 51 tcaaaatata cacacatata actatataag tttataatat agtgagtgca 101 ttacaacttt tgggatcttt ttttcgttgg gcaaatacaa cttttgggat 151 ctataaaaag gtactggtgc atgagcttgg gaagccaact tagtgaatat 201 ACCGCTCCAA CTTACTAAGA TAAACACTCT CATTCTAAAA TGTCTCTTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.005 -strand -28 : -34 CATGCAC AC RSP01642 Mean Expected Number 0.005 +strand +38 : +47 AAATGTCTCt Totally 2 motifs of 2 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: succinyl-CoA ligase (GDP-forming) alpha-chain |LOCUS: AT5G23250 |PROD: the same as GENE |7830392..7832846 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.33 C - 0.16 1 gatgctatat tcttaattac attatcaaaa gtagctagtt ttgcaattca 51 ccctataatt ttgtgtgcac aagaaaaaaa aaaaaaaaga gtataatttt 101 gtttggactc aaaTCAATgg gccttaatat ggatccatta aattaagccc 151 aaaagctttc gttaattctt caacgaagat cgctgaaaat ttcctttccc 201 ATTTCGCTGA ATAGGGTTCA GTACAAAATT CGGAATCGTA GGTTTAAGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.005 -strand -40 : -46 CGAAAGC AC RSP01218 Mean Expected Number 0.000 -strand -81 : -92 CCATTGATTTGA Totally 2 motifs of 2 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1125. Group TF: LFY /AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/RE: CL3 /TF: LFY ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: c-myc binding protein, putative / prefoldin |LOCUS: AT5G23290 |PROD: the same as GENE |7846084..7847626 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 1 taaactatta aaaattgttt tttgattcaa ttttgtttta atttttattt 51 gaatcaaagc atacactatt ttcttcttta atcatttaag gcctcgaaaa 101 tgttagaaac agcttaaatg ggCCAATatg ggccttatga cttcatctct 151 aacgctgaag tctgaactcc gcttaacggg ccatcacaca cttcgtctct 201 AACCTTTTGA AGAAAGAGTT TGAGCGCATC GCAAACTCGA AGGCGCGACT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.005 +strand -16 : -7 CACaCACTTC AC RSP01205 Mean Expected Number 0.008 +strand +3 : +12 CCTTTTGAAG Totally 2 motifs of 2 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FSD3 |LOCUS: AT5G23310 |PROD: |7850550..7852535 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.32 C - 0.16 1 tcttgataga gagaaaaata tacgcttttt gtttgttgtt cggttacaaa 51 ggatcgtcag agtatttgct aaaacccttg cttccttcag gttgatcttt 101 ccggttcgat ttaccggttt aatgtagtta accggggtaa aatcttatat 151 gttaaccggt ttgaaaagag attgataagg aaggcccttt ctctgaaaaa 201 GCGAGACCAA GAGTGCGAAG TAGCTCTCTG TCTTTCGAAG CAGAAGTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 +strand -138 : -128 TATTTGCTaAA Totally 1 motifs of 1 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: riboflavin biosynthesis protein-related |LOCUS: AT5G23330 |PROD: the same as GENE |7854132..7855816 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.25 T - 0.32 C - 0.17 1 agtgttgcct ctggtgttcc atttgtgaac tgacacttga attatttttg 51 aacatatgag tttgatgtac ttgacttgag gtcttaaagt cacaaaaaca 101 tacaagaccc tctggctgaa agagaaggtc ttgacgtgga tatgaaattt 151 accacagcgt taattgttta tgtgacacct gtcaccggtg atgcatagct 201 CCGGCGAAGA GTTTCGGAGA ACAAGTTTGG TCTTTTTAGG GGTTTGAGCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.006 +strand -41 : -31 tTAATTGTTTA AC RSP00214 Mean Expected Number 0.004 +strand -69 : -62 TGACGTGG AC RSP00215 Mean Expected Number 0.004 -strand -62 : -69 CCACGTCA AC RSP00304 Mean Expected Number 0.005 -strand -17 : -24 TGACAGGT AC RSP00609 Mean Expected Number 0.000 +strand -126 : -114 CTTGaGGTCTTAA AC RSP00894 Mean Expected Number 0.007 -strand -158 : -165 AATTCAAG AC RSP00943 Mean Expected Number 0.006 -strand -168 : -178 TCAgTTCACAA AC RSP01275 Mean Expected Number 0.005 -strand -61 : -70 TCCACGTCAa AC RSP01596 Mean Expected Number 0.006 +strand -178 : -168 TTGTGAAcTGA AC RSP01757 Mean Expected Number 0.004 -strand -66 : -73 GTCAAGAC Totally 10 motifs of 10 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 585. Group RE: UN I1 /AC: RSP00609//OS: Lycopersicon esculentum /GENE: rbcS1/RE: UN I1 /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G23460 |PROD: the same as GENE |7912772..7913498 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +303 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.17 T - 0.31 C - 0.13 1 acaaactcga aacaatgaat tattgttgaa attggaaact cttatataat 51 gtcacaaaat attttccatc agtgagaaaa gaacgttaaa ttttagaaca 101 tagttgcaaa ttttcttaaa atattttaat gttaatttag aaaaaaagaa 151 agaaaagttc ttgagctgaa taatcaagga tggtatgtga actaaggccc 201 ATAAGATAGA TCTCTTTCTT CTCGCTCTCG CATCTATCAG AGGGAGAGGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand -59 : -46 AAaAAAGAAAGAAA AC RSP00445 Mean Expected Number 0.007 -strand +20 : +11 AAgAAAGAGA AC RSP00860 Mean Expected Number 0.009 +strand -54 : -46 AGAAAGAAA AC RSP00861 Mean Expected Number 0.000 -strand +19 : +11 AGAAAGAGA AC RSP00872 Mean Expected Number 0.008 -strand -143 : -152 TtTGTGACAT AC RSP01678 Mean Expected Number 0.007 -strand -70 : -81 CAtTAAAATATT Totally 6 motifs of 6 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G23480 |PROD: the same as GENE |7918338..7919276 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +479 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.24 T - 0.25 C - 0.17 1 tgcagaagaa cttgaacctg aatgtgaaga tgatgatgat gataggacaa 51 tagaagatag cctcattgta ccaaaccctg aggctcatca aagtgacaaa 101 gagcaacgac aaagagattt accagtttct tctagtgtca agaaaagtca 151 agaaaattcc ttgcttctta agaatccgga agagcagttg aggctgctgt 201 GTGATGTTCC CGATGTTGTT GCAGAAAAAC TTGAACCTGA GTTTGTAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01527 Mean Expected Number 0.001 -strand +49 : +38 TCtACAAACTCA Totally 1 motifs of 1 different REs have been found Description of REs found 1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G23530 |PROD: the same as GENE |complement(7932969..7934439) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.34 C - 0.18 1 agaagaaaac tagtgactta aaccttaagc caaatccaaa atatttgaga 51 tttttttcta tttttacgtt tacgtgtttc cttgaaacga ttattttcat 101 tagttgttct aactataaac gTCAATaaaa acatagaaaa ttacagctgg 151 cagaatattt cttagcctat atagacgaag taataacagc ttacaaattc 201 ACTGTACTCT TCCACCAAAT CCATTAATCA TCATCTTTTC TTCACAGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01086 Mean Expected Number 0.008 +strand -138 : -129 TTTACGTTTa AC RSP01261 Mean Expected Number 0.003 +strand -131 : -124 TTACGTGT AC RSP01720 Mean Expected Number 0.001 -strand -122 : -133 AAAcACGTAAAC Totally 3 motifs of 3 different REs have been found Description of REs found 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 26S proteasome regulatory subunit, putative |LOCUS: AT5G23540 |PROD: the same as GENE |7937672..7939578 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.37 C - 0.10 1 atgatttgca ttgtaatgaa atttaaaatt ttgacaaaaa aaatatggaa 51 attcaaattg gttattaact tttatttttg gggatgattt ggaaatttgg 101 tgaattATTG Gttacaataa ataaaaggaa atattgaagg acttatatgt 151 aattagtgtc gcctaatcga gtaattcgat ccatcttcgt ctgtcttgtt 201 AACAAAGAAA ACTGAGAAAG GTTTTCTTAT AAGATCCCAT TCTTGTAGCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00914 Mean Expected Number 0.007 +strand -118 : -109 GATGATTTGG AC RSP00915 Mean Expected Number 0.004 +strand -118 : -109 GATGATTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G23680 |PROD: the same as GENE |complement(7984957..7986854) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +391 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.15 T - 0.28 C - 0.11 1 tgaaaaaaat aaagttgaag catatattga agaaattata tagatgaatt 51 atcctcaatt tttattaaat tagtcgcaca acaaaaaatt aaattggtgt 101 tggattataa agcaggtgga ctgttgtCCA ATgaaattgg ctaagccaaa 151 aaagggaaaa caaattaaac cccattacct aatttataaa aaaaaatgga 201 AATATGTGTG GAAACAAATC TATAAAGGAT GATTAATATA CAACAACTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.010 -strand -46 : -55 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.002 -strand -46 : -55 CCTTTTTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RPS11-BETA |LOCUS: AT5G23740 |PROD: 40S ribosomal protein S11 (RPS11C) |complement(8008043..8009439) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.26 C - 0.22 1 atgtagcata agataaaatc aaatcaatgt tttagctacg aacgagtcac 51 aatagtatag cgaacaattt atccgtggat caaagttggc ccaaaagggc 101 ccaacatttc agtagccggt taataaaatg taaatcacgg cccataaaac 151 aaaggcccaa acccaaataa agagagagat cttcgaaact agggtttctt 201 CCGGAGCTTC ACTACTTGAG ATTACTCTCA TTCGCTTTCT TTTGCCTCTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand -30 : -22 AGAGAGAGA AC RSP01091 Mean Expected Number 0.010 +strand -188 : -178 ATAaAATCAAA AC RSP01201 Mean Expected Number 0.003 -strand +11 : +4 TGAAGCTC AC RSP01214 Mean Expected Number 0.005 -strand -102 : -111 CCCTTTTGGG Totally 4 motifs of 4 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1112. Group TF: NIT2 /AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS II /TF: NIT2 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: heavy-metal-associated domain-containing protein |LOCUS: AT5G23760 |PROD: the same as GENE |complement(8013090..8014231) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +99 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.33 C - 0.18 1 cttgtgtctg agtactttta agtgaagaga taaaaacaaa acaactttag 51 aaaaagtagg cgaagtataa gagtatagca gagctgtcca ttacattgaa 101 acatacgtca catgttctca tcctctacca aaagccacca caaacactaa 151 cttttgtcaa ttgtcaatca atatattcaa tacccttttt tttgtttatt 201 CCCACTAAAT TATAATTTTT GCTTTATAAA AAAAAATATC AAACTCTATA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.005 +strand +37 : +48 TAtCAAACTCTA AC RSP00454 Mean Expected Number 0.003 +strand -97 : -87 TACGTcACATG Totally 2 motifs of 2 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G23840 |PROD: the same as GENE |8035770..8036985 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +107 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.33 C - 0.14 1 ataatgtggg ataaagaatt gacaattgat catacattca tactaatatt 51 ttaagattct cgctcttata atgtgggata aagaattgac attgatcatg 101 tactaatatc ttaagattct cgctgataat gtgggagatt aaaataatgg 151 atataatgta tacaggctat agcatcctgc actaacgatc ccatctactt 201 ATTCTGAAGA TTATAAAATA GCAGGCTTGC ATATATAGAA GAATAACATG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00122 Mean Expected Number 0.004 -strand -64 : -70 CTCCCAC AC RSP00574 Mean Expected Number 0.008 -strand +6 : -2 CAGAATAA AC RSP01031 Mean Expected Number 0.010 -strand -81 : -88 AGAATCTT AC RSP01031 Mean Expected Number 0.010 -strand -141 : -148 AGAATCTT Totally 4 motifs of 3 different REs have been found Description of REs found 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G24165 |PROD: the same as GENE |8188563..8189279 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.37 C - 0.18 1 ttttcttttt ttttggtcat aattgtatgt tttttttgtt tcttggcatt 51 gtcactgaaa attatacctt ttcatttttg ccttctaaat aacccaattg 101 tgttacttta cagaaaagcc catccaacga ttatttttct tcagcccatt 151 agcccattaa cttcaggata aagataagag ctacgttcaa ctctatggtc 201 AGAAAAATCA GAGAAAGAAA GAAAACAGAG CAATTACTTG AAGAATCCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.002 +strand -30 : -22 AAGATAAGA AC RSP00263 Mean Expected Number 0.000 +strand -80 : -72 CATCCAACG AC RSP00444 Mean Expected Number 0.000 +strand +11 : +24 gAGAAAGAAAGAAA AC RSP00792 Mean Expected Number 0.004 -strand -155 : -164 CCAAGaAACA AC RSP00860 Mean Expected Number 0.001 +strand +12 : +20 AGAAAGAAA AC RSP00860 Mean Expected Number 0.001 +strand +16 : +24 AGAAAGAAA Totally 6 motifs of 5 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 255. Group RE: Non /AC: RSP00263//OS: Triticum aestivum /GENE: H3/RE: Non /TF: unknown ||Identical REs AC: RSP01563 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: integral membrane family protein |LOCUS: AT5G24290 |PROD: the same as GENE |complement(8263135..8265744) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +123 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.32 C - 0.15 1 ttgttttgaa actgacatat attaacatgt ttaaatagag tgctaattaa 51 ctatgacacc ttccctaatt accaaaatcc aaaagtaatc ctcgttacga 101 atatttaacc cctcgtgctt ccctcgtggg tattatttat gtatatatat 151 aaaagatcat atgattggac acgataatta ggaacaactg tgtttttttt 201 TTAAATTTAA AAAAGAAAAA AGAAGAAAAG AGAGAGAGAG ACTCACAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.009 -strand -33 : -39 CCAATCA AC RSP00530 Mean Expected Number 0.007 -strand +16 : +5 TCTTTTTTAAaT AC RSP00572 Mean Expected Number 0.010 -strand -181 : -188 ATATGTCA AC RSP00864 Mean Expected Number 0.001 +strand +29 : +37 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +31 : +39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +33 : +41 AGAGAGAGA Totally 6 motifs of 4 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G24313 |PROD: the same as GENE |complement(8276788..8277405) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.11 T - 0.27 C - 0.16 1 tacaataata attcaacttg cacaaaaaaa aaatctaaaa caaatcaaaa 51 ctaacaacaa atctaaaatc atataatttt acttggtaca caaaaataat 101 atttttcaga aaTCAATcaa tctaataata gttagtggga accctctatt 151 gtgactttgt gagctatgta tatacataag acattacaag atggaacctc 201 AACATAGTTG ATAAGCAAAG AAATTAACTC TATCGATCAC CGGATGAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.005 +strand -49 : -39 TGAcTTTGTGA Totally 1 motifs of 1 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: proline-rich family protein |LOCUS: AT5G24316 |PROD: the same as GENE |complement(8278780..8279967) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.35 C - 0.15 1 aagagaggaa acaataatgg tataacttaa ttatggagaa ttcacatatt 51 cgtttttgct ttgactatat tgattgtcca tattttagtt gattacggat 101 tcatctagTC AATgtgatgc gttatcttca taattacgat tgactactat 151 atatctctgt cttcgtatat atgtgtatct caacttatac tataaaaatc 201 AATTCACATA TCACCAAAAC AAAACAAAAA TGAGAGAATC TGACTTAAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.001 +strand -199 : -191 AGAGAGGAA Totally 1 motifs of 1 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: EMB2024 |LOCUS: AT5G24400 |PROD: |complement(8330318..8331840) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.29 C - 0.24 1 gaaacaaacc aaattttgtt cggttcttat atgaatccta aacatcttat 51 ccaaatcata aaactgaacc agaacggaac caaagatcta gatctacaca 101 ttagttcata agctggacca gactcataaa caaactaaca aaacacaggt 151 ttggtcggag aaggctttat taatccactt gtcctcctct cagactctac 201 AAAGTCAAAG TTGTTCACTT TACCTATAAA AACGCTCTCT CACTTTCTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.004 +strand -27 : -18 tCCACTTGTC AC RSP00340 Mean Expected Number 0.004 +strand -27 : -18 TCCACtTGTC AC RSP00683 Mean Expected Number 0.004 -strand -18 : -27 GaCAAGTGGA AC RSP01751 Mean Expected Number 0.001 +strand -27 : -19 TCCACTTGT Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 1557. Group TF: AREB2/ABF4 /AC: RSP01751//OS: Arabidopsis thaliana /GENE: COX5b-1/RE: distalB-like /TF: AREB2/ABF4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: oxidoreductase |LOCUS: AT5G24530 |PROD: the same as GENE |8378836..8383404 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +131 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.30 C - 0.18 1 ccaagaacct cctagtattt aaaaaaaaca cttaaaaata tccaaacatt 51 taatttttta atcataaatc ttataaaacc cacagctgtc ctttcgaaaa 101 tccactatat tcggtggatt aagaattaaa aatcattcga ataatatgca 151 tacttatata acaaaaacaa ttcacttgaa aacataatca attgagagta 201 GGACCGAGTA ACACTGCATT GTTTTATATA TATCATCGAT GCACATCGCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00187 Mean Expected Number 0.007 -strand -84 : -88 CCACC AC RSP01058 Mean Expected Number 0.010 -strand -94 : -101 TAGTGGAT Totally 2 motifs of 2 different REs have been found Description of REs found 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G24650 |PROD: the same as GENE |8437088..8439107 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.24 T - 0.22 C - 0.11 1 tgtcaaaagc aatctaacga ttttttttac aaaattgtaa aatgaataac 51 atggtgttgg caacggtaaa aaaacatgta gctattatta ttatgggccg 101 aataaagtaa tgtagtatta taatgggcaa atgaggcCCA ATaatacatc 151 cggtagaaac acggaaccgg cataaatgag ggagataagg agaagaagaa 201 GCGAAAGAAT AAAAGTGTGA CAAATTAAGA AGAGAGAAAT GGGGAAAGAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00943 Mean Expected Number 0.008 -strand -156 : -166 TCATTTtACAA AC RSP01596 Mean Expected Number 0.008 +strand -166 : -156 TTGTaAAATGA Totally 2 motifs of 2 different REs have been found Description of REs found 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G24655 |PROD: the same as GENE |complement(8440698..8441221) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.52 G - 0.15 T - 0.17 C - 0.16 1 gaattcacat gttatattat tggatccaac gtgtatatcg gaacataatt 51 aaaaaaacaa aatgttctag aggaaggaaa ataactaacc ataaataaga 101 acgaaaaaca agagataTCA ATgaatctag acatataccc accacccaaa 151 gactagtcgc agaaacggct atataaggaa caatcaatta ccaaaagaag 201 AAGAACAACA ACAAAAAGTA AAGAGACACA AAAACAAAGA AAAGAGAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01006 Mean Expected Number 0.008 +strand -60 : -54 ACCACCC Totally 1 motifs of 1 different REs have been found Description of REs found 931. Group TF: PtMYB1; PtMYB4 /AC: RSP01006//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-II) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: alcohol dehydrogenase, putative |LOCUS: AT5G24760 |PROD: the same as GENE |complement(8494794..8497381) |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.26 T - 0.33 C - 0.14 1 agaagaaact aaaattagat ttgaataatt gaatccattg caagacttag 51 gatgaagttt cggattagtt gacgaaaagg gttggtggcg ggaataactt 101 tcatcgaacg tgggacctct aaagctgtaa agtcagcatt tttttaactt 151 tgttgaatca cttaagctca atggtggttg gtggtgattc ggtgttaggt 201 GAAGAACCTC TGTTTCTTCC TCTTCTTCTT CAGGGTCGGT GTTAGGTGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00078 Mean Expected Number 0.002 -strand -17 : -28 CCACCAACCaCC AC RSP00114 Mean Expected Number 0.005 -strand -122 : -131 CTTtTCGTCA AC RSP00433 Mean Expected Number 0.002 +strand -28 : -17 GGTGGTtGGTGG AC RSP01708 Mean Expected Number 0.009 +strand -192 : -183 CTAAAATTAG AC RSP01708 Mean Expected Number 0.009 -strand -183 : -192 CTAATTTTAG Totally 5 motifs of 4 different REs have been found Description of REs found 77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 413. Group TF: AtMYB84 /AC: RSP00433//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB84 BS /TF: AtMYB84 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KNAT3 |LOCUS: AT5G25220 |PROD: homeobox protein knotted-1 like 3 (KNAT3) |8736077..8738587 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.31 C - 0.17 1 ataattcaat tatattgata aataggttgc aaaaaataag aaagaataaa 51 tatgagaata aatggtcatc tctcgatctc tcagctctgt gcaactctga 101 acacacccac acatatatac tcagatacat acatacacac cacaaaaacc 151 aattattttc caattttaag aaaagtttct gtgtcttttt tttttttttt 201 GGTGATAATT GAAACATATG AAACAATCGT CGTCATAGAA GCAGCAGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.009 +strand +30 : +39 tCGTCATAGA AC RSP01030 Mean Expected Number 0.008 -strand -21 : -28 AGAAACTT Totally 2 motifs of 2 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G25340 |PROD: the same as GENE |8793021..8794787 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +220 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.17 T - 0.24 C - 0.17 1 taaatctaaa agctatttta ttaaggagaa aagtttttgt acgaagacta 51 aatattacaa gattattccg atataattag taaatggaaa tggtaaaatt 101 agtaagaaaa tgATTGAaag agagaagaag aaatcacaag aaacgcggcc 151 gaccctaact tcctcaacaa ggaatctagg catttacaac aaaactaagg 201 AAGCGTAAAA ACCTCTATCA TCACCAAGTT CCGTCGTCTG ATTCGAACCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00838 Mean Expected Number 0.008 +strand +31 : +36 CCGTCG AC RSP01480 Mean Expected Number 0.009 +strand -187 : -180 TATTTTAT Totally 2 motifs of 2 different REs have been found Description of REs found 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G25460 |PROD: the same as GENE |8863393..8865680 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +40 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.31 C - 0.25 1 cttttttttt acaaattttt tattccggaa gtaaccccaa atggtcaata 51 aggttccaaa tctctgaaaa ggaatgaggt cacaacccca cgtgggatac 101 caactagcca cagtggcaca cactcgtaat atatagaaac ctccaaggtc 151 attttcatag ttctatcccc ttataagcaa tagccacaac tctctttgct 201 AATTACATTT TACACTCATC TCGTTCTCTC TTCCGTCAAT ATGGAAGGCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.004 -strand -23 : -32 GCTTATAAGG AC RSP00254 Mean Expected Number 0.006 -strand -129 : -135 CCTTTTC AC RSP00718 Mean Expected Number 0.001 +strand -113 : -106 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -106 : -113 CCACGTGG AC RSP01104 Mean Expected Number 0.008 +strand -64 : -57 AAACCTCC AC RSP01237 Mean Expected Number 0.005 -strand -63 : -72 tTCTATATAT Totally 6 motifs of 5 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G25760 |PROD: the same as GENE |8967658..8969372 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +328 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.12 T - 0.37 C - 0.29 1 cgccattctc gccggatcaa ttcttagcgg ccgcaacaat gttagctctt 51 aactcactac caccgcctag ggtttcctta ttaccaccgg ttctatcatc 101 cggtttcgtt tccttattac caccggttct atcatccggt tatgtttttt 151 tataaagtca ttttaataaa actttctatg gttcggaaaa aaaaaacttc 201 ACATAATCAT CGCTATTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01283 Mean Expected Number 0.000 -strand +48 : +32 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +46 : +30 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +44 : +28 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +42 : +26 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +40 : +24 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +38 : +22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +36 : +20 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +34 : +18 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +32 : +16 GAGAGAGAGAGAGAGAA Totally 9 motifs of 1 different REs have been found Description of REs found 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: early nodulin-related |LOCUS: AT5G25940 |PROD: the same as GENE |complement(9053704..9055217) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.35 C - 0.18 1 tctaacacaa attattctaa atacatgatt gaaatacatt tctaaattgg 51 cgttttatag actatagtat tttgacaact ttgttttcaa tattggcgtt 101 tcattatttt ggtgaaagat tcccaactta taaaaaaaaa aaacgaattt 151 ttaattttcg tcctaatcat ttatttccta accaaagaaa aaggcaaatc 201 GCGACCCGTC TCTCTCTCTC TCTCTCTCCT TGAAATCGAA AGATCAAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.003 +strand +20 : +30 cTCTCTCTCCT AC RSP00864 Mean Expected Number 0.002 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +19 : +11 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +17 : +9 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +29 : +21 GGAGAGAGA AC RSP00941 Mean Expected Number 0.006 -strand -167 : -174 TTTCAATC AC RSP01283 Mean Expected Number 0.000 -strand +28 : +12 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +26 : +10 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +24 : +8 GAGAGAGAGAGAGAGAc AC RSP01594 Mean Expected Number 0.006 +strand -174 : -167 GATTGAAA Totally 13 motifs of 6 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: S1 self-incompatibility protein-related |LOCUS: AT5G26060 |PROD: the same as GENE |complement(9104854..9105527) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.17 T - 0.23 C - 0.16 1 aaaataaaaa taattcaaca aaaaatagta gaaatgtgga tgtaggagaa 51 tgacttgttc ctccccttga caggttacat gtctaaaaac agtaacaaag 101 ttgtggatgc gGCAATaact gaatccttag ccgttacatg tctaaaaata 151 gtagtctctg tactaacgct atcaacgtca agaaatcgaa aaacaaaatc 201 GAGTGAGCAA AAATTAAAGA ACAACGAACA AAATCAGAAT TACACAAATG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00140 Mean Expected Number 0.005 -strand -186 : -198 AATTATTTTTATT AC RSP00304 Mean Expected Number 0.004 +strand -133 : -126 TGACAGGT Totally 2 motifs of 2 different REs have been found Description of REs found 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G26110 |PROD: the same as GENE |complement(9117910..9119809) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +454 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.21 1 tgtatcaaat agggttttgg aaattttcca aaccgaacga actaatcata 51 aacaatgctg tttctgtttt tcaattcaaa tttggataaa ccaaacaaaa 101 accggttcat gttcttataa tttcggtttt tgattccggt atgcacctag 151 ataaccggaa tcaaattaaa attaaaaacc ctagttccga cctcgtcttc 201 ATTGTTCACA AACGAGTCGC CGACGACAAA CTCAGGCGAA AATTTCGCAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00881 Mean Expected Number 0.004 -strand -67 : -76 ATCAAaAACC Totally 1 motifs of 1 different REs have been found Description of REs found 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: germin-like protein, putative |LOCUS: AT5G26700 |PROD: the same as GENE |complement(9308039..9309628) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.32 C - 0.18 1 tacggtacta aagccaaata gattagatga gatgtctcaa ttcaccaata 51 aacaactctt gttaatcacc aacaattaaa atttaaaaac ctaattttgg 101 ctaaattaag aattaaactc cacctctcac aATTGGccta ataataaaca 151 ttgtaaagca tcctcggtgt ttataagaat accaaattca aggcattttt 201 ATTGTGAATT TATTAGTAAT TTATAAATTC ATCAAAAACA AACTCTTTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.002 +strand -82 : -73 TCCACcTCTC AC RSP00543 Mean Expected Number 0.007 +strand -10 : -4 AGGCATT AC RSP01032 Mean Expected Number 0.003 -strand -101 : -110 CCAAAATTAG Totally 3 motifs of 3 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 519. Group RE: GT-1-like K /AC: RSP00543//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: GT-1-like K /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: D111/G-patch domain-containing protein |LOCUS: AT5G26610 |PROD: the same as GENE |9375189..9377128 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +270 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.37 C - 0.21 1 atctattcgg tgatattaaa aaatttggtt cggtttagtt cgattctttt 51 tgttttgatt ctaatttggt agattccgtt cggttaattt gtccacacta 101 acatttcccc aaattactgt tatttgtttt gggcCCAATc ccaaaagctt 151 cgggcctgct aacaaaatat agacccaaaa attcaacgtc gattgttgtt 201 CTTCTCGCTC TGTGACAGAT TCTCGCTCTC TCTACAAACT GTCAGGTAAG 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G26770 |PROD: the same as GENE |complement(9407723..9410120) |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +382 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.33 C - 0.20 1 caatccaata actagaaatt cggaagggaa agacgtaata actcataatc 51 ctttttatga caaaaaacaa taaattctca aaacccataa ttagtggaaa 101 aattaataaa atcaagtagt agtaattatt tacttttcta atttccagat 151 gtatctgtct ttctcacaat cagataagcc aaaaattaat tgaccactgc 201 GTGTTAGCTT CCTTTACGTG TTTCTTTCCT TTCTCTCTCC TCTGTCACGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.009 -strand -22 : -28 GCTTATC AC RSP00467 Mean Expected Number 0.003 -strand -5 : -14 TGGTCAATTA AC RSP00525 Mean Expected Number 0.009 -strand -49 : -55 ACATCTG AC RSP00653 Mean Expected Number 0.004 +strand +31 : +41 TTCTCTCTCCT AC RSP00862 Mean Expected Number 0.003 -strand +34 : +26 AGAAAGGAA AC RSP00865 Mean Expected Number 0.001 -strand +40 : +32 GGAGAGAGA AC RSP01261 Mean Expected Number 0.003 +strand +14 : +21 TTACGTGT Totally 7 motifs of 7 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 501. Group TF: DPBF-1; DPBF-2 /AC: RSP00525//OS: Daucus carota /GENE: Dc3/RE: E5-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G26790 |PROD: the same as GENE |9423095..9423614 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.24 C - 0.28 1 agaaccaaaa acagatccca atatatccaa tcacagctgc acatctcgaa 51 aatgtaacat gactaaatta aaccatcacc gttaatttta aaaacatcca 101 acacatcaaa aacacatctg taaactcgca tggaccacaT CAATcctctc 151 atgcccatca tttccgccat aaaagcttta ccttttttcc acaattagcc 201 AGGTACACAC TAATTCGACA CTAGTAGAAT CTTACACACA CACACTAGAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.007 +strand -3 : +7 GCCAgGTACA AC RSP00234 Mean Expected Number 0.005 -strand -25 : -34 GCTTTTATGG AC RSP01031 Mean Expected Number 0.005 +strand +26 : +33 AGAATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (GATA type) family protein |LOCUS: AT5G26930 |PROD: the same as GENE |9479469..9480200 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +126 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.31 C - 0.25 1 gatcccggtc gtgcgtactg ccactttgct ttccacccga caatgatttg 51 ggagatgttt tgttttgtgt catacatcta ccaaaaaagt cttaatcatt 101 gttcatcaaa agagcgccca agggctcttt cgtcttctta ccacacgcac 151 actagttcga gagggttttt aaggagctct taagcctttc ttgatgactc 201 ATACCACGAA CAAGAACCAA TCTTGTCACC CATATAATCT CCGTATTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00613 Mean Expected Number 0.008 -strand -6 : -13 ATCAAGAA AC RSP00664 Mean Expected Number 0.001 -strand +2 : -7 ATGAGTCAT AC RSP01278 Mean Expected Number 0.002 +strand -7 : +2 ATGACTCAT AC RSP01278 Mean Expected Number 0.002 -strand +2 : -7 ATGAGTCAT Totally 4 motifs of 3 different REs have been found Description of REs found 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (DNL type) family protein |LOCUS: AT5G27280 |PROD: the same as GENE |9617489..9618484 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.39 C - 0.14 1 gattagggtt gatgcgttgc agcaccagct gagtcccacg gaacggattg 51 ttataatact atttattttg tttgcttatt attttttcat atatactgaa 101 gatacataaa ataTCAATtc ttttttttag ttgataattt cataatttat 151 aacttttaaa ggttatatat gcaaatttct catagataga aacaaatatc 201 TCTCTCAGAG AAGTAAAAAC AAAATTTCGT TCTGTGTGAA GCCTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00713 Mean Expected Number 0.004 +strand -175 : -169 CAGCTGA AC RSP01017 Mean Expected Number 0.005 +strand -13 : -6 AGAAACAA AC RSP01091 Mean Expected Number 0.008 +strand -15 : -5 ATAGAAaCAAA AC RSP01303 Mean Expected Number 0.004 -strand -189 : -198 TcAACCCTAA AC RSP01304 Mean Expected Number 0.003 -strand -189 : -198 TcAACCCTAA AC RSP01305 Mean Expected Number 0.001 -strand -189 : -198 TCaACCCTAA AC RSP01313 Mean Expected Number 0.000 +strand -69 : -55 TGATAATTTCATAAT Totally 7 motifs of 7 different REs have been found Description of REs found 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1198. Group RE: Telo box /AC: RSP01305//OS: Nicotiana tabacum /GENE: Thio h2/RE: Telo box /TF: unknown 1206. Group RE: Regulatory Motif 3 /AC: RSP01313//OS: Glycine max /GENE: 11S A2B1a/RE: Regulatory Motif 3 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: mevalonate kinase (MK) |LOCUS: AT5G27450 |PROD: the same as GENE |9690613..9693227 |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +441 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.32 C - 0.19 1 aaccgaaaat caagaaccgg taaattcaaa ttgaaagtga aactttctta 51 acaaaattct cacattaaaa gacgaattga gtttaaacca cggttaaacc 101 atgctaaacc gagtaaaatt acatttatat atttttaacc ggaaatgtta 151 aaccagaacc ggttatttaa cactattatc ctcgaagagg ttacttgaac 201 ACGATTCTCG TTGGCTTCAG ACATTTTCCA TCTTCTAGGT TTCTTTCTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.003 -strand +48 : +40 AGAAAGAAA AC RSP01463 Mean Expected Number 0.004 +strand -78 : -66 ATTTATATATTTt AC RSP01601 Mean Expected Number 0.008 -strand -159 : -166 TTTCACTT Totally 3 motifs of 3 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hypoxia-responsive family protein |LOCUS: AT5G27760 |PROD: the same as GENE |9830368..9831787 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.32 C - 0.20 1 aattaaattt tgatggcttt ggaatcaatt tagcgttgaa aaaaagtcaa 51 aaattagcga atgttgaaag accaattttt tacactttat taagacacgt 101 cagcaaaatg aagcgcaagt taggaaATTG Gcttttactt cttccttgag 151 aagtttccga ctcggccgct ttaaaaccaa cgcccgacgc tcatttcttc 201 TCTCCATTTT TTTTTGCTCA TCTTCTTCAA CAATGGCGGA ACCAAAGACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 +strand -160 : -149 AAAAAGTcAAAA AC RSP00248 Mean Expected Number 0.002 +strand -107 : -98 GaCACGTCAG AC RSP00441 Mean Expected Number 0.010 -strand -110 : -119 AAtAAAGTGT AC RSP00997 Mean Expected Number 0.004 -strand -97 : -106 GCTGACGTGT AC RSP01013 Mean Expected Number 0.007 -strand +10 : +1 aAAATGGAGA AC RSP01035 Mean Expected Number 0.009 -strand -101 : -107 ACGTGTC AC RSP01258 Mean Expected Number 0.003 -strand -99 : -106 TGACGTGT Totally 7 motifs of 7 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L22 (RPL22C) |LOCUS: AT5G27770 |PROD: the same as GENE |9835890..9837332 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +280 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.27 C - 0.21 1 acaaatgtgg ggcaacacac tccgcaagtt tctcggccca ttagtagatc 51 ctttgtaaaa atttcactta cccattacaa atatttgggc ttgaaaaaca 101 aatctgaaag ttatcggggc taatttcgaa taaagaaaat aaatgaggat 151 cacttctgtt atttatcatc ataaaatgac acgagcacct taaaagccaa 201 AAAAAACCTA ATAACATCTT CTTCTTCGTC TTCAAAGATC AAAAAACGCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.004 -strand -4 : -13 GCTTTTAAGG AC RSP00355 Mean Expected Number 0.004 -strand -40 : -47 TAACAGAA AC RSP01000 Mean Expected Number 0.001 -strand -186 : -195 tTGCCCCACA AC RSP01030 Mean Expected Number 0.006 -strand -168 : -175 AGAAACTT AC RSP01601 Mean Expected Number 0.006 +strand -139 : -132 TTTCACTT AC RSP01635 Mean Expected Number 0.001 +strand -12 : -2 CTTAAAAGCCA Totally 6 motifs of 6 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L18 family protein |LOCUS: AT5G27820 |PROD: the same as GENE |9859858..9861133 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +730 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.34 C - 0.15 1 ggagaaaacg agttatttaa ttgttttggg cttttggccc attagaagat 51 attttgtaaa tgttttaaac ttacccatta gacatcattg cgggattttt 101 gaaacaaatc tgaaagtttt tggggtttat ttcgaataaa caaacaaata 151 aaggtcactt atgttattta ttattatcag aaaatgacct gaatcacaaa 201 GCCAAAAAAA AAACCTAAAC GCATCTTCTT CTTCTCACTT TCAAGGATCA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATCYSD2 |LOCUS: AT5G28020 |PROD: cysteine synthase |complement(10026187..10028584) |SUPPORT | 9 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +348 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.37 C - 0.18 1 ttttgtttta ataacaaaat acaactattg gatgctctca ttacgcaata 51 tgacaaaaac tctttagatg tcaaattttt aacattatta tacaagaatg 101 atgacataaa ctcgtcttca tacttcaaca tcgttcagtg tgcaccacat 151 gcaaagtagg gtagtctcta tatatcctaa tctagaatac agccttgtct 201 TCTTCACTAA TAATTCGTTT AAACGCAAAG GTACGACTTT TTTTTTTTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.009 +strand -51 : -45 TGCAAAG AC RSP00749 Mean Expected Number 0.007 -strand -181 : -192 ATTTTGTtATTA AC RSP01237 Mean Expected Number 0.002 +strand -35 : -26 CTCTATATAT Totally 3 motifs of 3 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT5G28460 |PROD: the same as GENE |10374903..10377306 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +28 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.36 C - 0.18 1 tcctcatttt gttataaata taatgtaatc agcatgataa aaagctcacg 51 ttcagtttta tgagaaaaaa taaatttttg tccccattgt gtaatattgt 101 aaaggtttat ttgggctaat gtgtaagccc attatttaaa atgggcccaa 151 cttcttgtac gttgaattcg ccaacagagt tcgtcgtctc acttttcccg 201 GTGGCCGTCT TTTTCAAAAC CTTAGACAAT GAGTATCATG CTATCAATTT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT5G32450 |PROD: the same as GENE |12096848..12098803 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.32 C - 0.18 1 gaaactttcg tttaaaacca tgtgttcata ctttactcta ttgaccaaaa 51 tttttttgta tattctaaca tattttatta tctaggttac atacagaaat 101 aaaacactaa aacgaggggc aaaacagtaa acctaaccta aataaggaaa 151 atacacattt atttaggcag agataatatt agcttagctg gacaaacagt 201 GACGACGGCT GGGCTGTTCA AAATCATTTC TTCTCTCTTC CGTCAAAATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.000 +strand -71 : -62 AACCTAACCT AC RSP00838 Mean Expected Number 0.008 -strand +8 : +3 CCGTCG Totally 2 motifs of 2 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G35090 |PROD: the same as GENE |13375644..13376318 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.36 C - 0.19 1 cctaaatatg tccccccttg ctcacaaagt caaaagactc attaatattt 51 aacgtgaaac aaaattgaac ctcattttaa ttggaaattc aaatattcct 101 aaaatagtaa agaatttcaa cttctcctcc gaagttttgg ttaaacagtt 151 catttcaaga aaaaataata aatgaaaatc aaccaaatat ctcgtcgatc 201 ACTTGTTTTC TGTTTTGTTT TTCTTTCCTC TAATACAGAT TTGATCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00933 Mean Expected Number 0.008 -strand -29 : -41 TTTATtATTTTTT Totally 1 motifs of 1 different REs have been found Description of REs found 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S3 (RPS3C) |LOCUS: AT5G35530 |PROD: the same as GENE |complement(13727369..13729487) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.34 C - 0.21 1 taacacaagg aacggaaatt atagatatga gacgtgatcg ggatagctaa 51 attcaattct cactgtcact aattttaata cgggtgaaat ggttttattt 101 tcagtccctt tatattgtgg cttgTCAATa gaaatgggcc ttaaaaggcc 151 gggccttgct cttaacttta tttaaccaca caattttatc atttcactcc 201 TAACGCACTC TCTTCTCCGA ATCTAGGGTT TTTGTCTCTA GCCTCCTCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.001 -strand -21 : -32 TGTGGTTAaATA Totally 1 motifs of 1 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GS2 |LOCUS: AT5G35630 |PROD: glutamine synthetase (GS2) |13847846..13850772 |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +604 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.30 C - 0.20 1 tgctaatact gtataccaca atcacttatg agtattgaag ttgagataga 51 ggaggtacaa ggagacctta tctgcagaag acaaaaagcc atttttagca 101 aaactaaaga aagaaaaaag ATTGAaacac aaatatgcgc cactcgtagt 151 ccacccctat ctctttggca aaagccactt cactcttttt ccctttttat 201 ATATTAAAAA TAAAGATTCT TAAGGCTCTT CATATTTTGC TTTTTGTCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.004 +strand -93 : -85 AGAAAGAAA AC RSP00941 Mean Expected Number 0.008 -strand -74 : -81 TTTCAATC AC RSP01031 Mean Expected Number 0.009 -strand +20 : +13 AGAATCTT AC RSP01594 Mean Expected Number 0.008 +strand -81 : -74 GATTGAAA Totally 4 motifs of 4 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: auxin-responsive family protein |LOCUS: AT5G35735 |PROD: the same as GENE |complement(13917982..13920227) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.31 C - 0.18 1 tttaaaaaac tttatcatat tataattatg ttattaaata aattaaataa 51 aaaaaaactt taaatttgac aaatttgagt gttacgctta cgtcatattg 101 tgaaaaagag aaaggtacaa aatgggcaaa aatagtcaac aaagaacagc 151 ttctccgact ttcgtagcct ttaaaaaagc atccgcgttt gcttttctat 201 AAATATCTTC GAAACCCCAT TACTCTCAAA TCCAACCAAC CTTTCAAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.004 -strand -106 : -113 TGACGTAA AC RSP00447 Mean Expected Number 0.002 -strand -3 : -12 AGaAAAGCAA AC RSP00949 Mean Expected Number 0.005 +strand -68 : -61 TAGTCAAC AC RSP00998 Mean Expected Number 0.001 +strand -194 : -181 AAACTTTATCATaT AC RSP01733 Mean Expected Number 0.005 +strand -18 : -13 CCGCGT Totally 5 motifs of 5 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 919. Group TF: 3AF5 /AC: RSP00998//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 5'-III element /TF: 3AF5 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: HCF109 |LOCUS: AT5G36170 |PROD: peptide chain release factor, putative |complement(14253106..14255256) |SUPPORT | 7 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.40 C - 0.13 1 atttatattt agtatttaat aaaaacttgt agtactattt gtggaatttt 51 ttaaaagata tactactttt tgaaaaatta tttttttcat tactatcttc 101 gtcaatctct tttctttaat ccattaaaaa cCCAATtttt aaatatattc 151 cacaatttaa cttttatact taaaactgat gacgtggctg ctagctttgt 201 ATGGATAACT TGGCAAAGGT CAGAAATCTG AAGAAAAGCT TTGAGCAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -21 : -13 TGACGTGGC AC RSP00214 Mean Expected Number 0.000 +strand -21 : -14 TGACGTGG AC RSP00215 Mean Expected Number 0.000 -strand -14 : -21 CCACGTCA AC RSP00248 Mean Expected Number 0.000 -strand -13 : -22 GCCACGTCAt AC RSP00307 Mean Expected Number 0.010 -strand +14 : +9 GCCAAG AC RSP00423 Mean Expected Number 0.008 +strand -20 : -15 GACGTG AC RSP00424 Mean Expected Number 0.008 -strand -15 : -20 CACGTC AC RSP00819 Mean Expected Number 0.000 -strand -13 : -22 GCCACGTCaT AC RSP00821 Mean Expected Number 0.000 -strand -13 : -22 GCCACGTCaT AC RSP00847 Mean Expected Number 0.001 -strand -14 : -23 CCACgTCATC AC RSP00913 Mean Expected Number 0.001 +strand -23 : -14 GATGACGTGG AC RSP00915 Mean Expected Number 0.001 +strand -23 : -14 GATGACGTGG AC RSP00916 Mean Expected Number 0.001 +strand -23 : -14 GATGACGTGG AC RSP00997 Mean Expected Number 0.001 +strand -23 : -14 GATGACGTGG AC RSP01034 Mean Expected Number 0.001 +strand -19 : -13 ACGTGGC AC RSP01275 Mean Expected Number 0.001 -strand -13 : -22 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 +strand -23 : -13 GaTGACGTGGC Totally 17 motifs of 17 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G36290 |PROD: the same as GENE |14319969..14322406 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +238 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.42 C - 0.09 1 ttttttaaag tagtcttttg taaaaattta taatattgat gttaaaatag 51 tattttgtaa aaatttataa tattgatgtt cacgataaaa aaattagttt 101 ttcaaatctt tttttagtat atagtGCAAT ttcttaaaat atagtagcaa 151 ctagtaaaat ctggaatata taataagatt taaaaatatt tttgtaaacc 201 GTGTTAATTT GATTAATTCC ATTACATCTT CAAAACCGTA CAGATCTCTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01712 Mean Expected Number 0.002 -strand -84 : -93 CTAAAAAAAG Totally 1 motifs of 1 different REs have been found Description of REs found 1520. Group TF: RIN /AC: RSP01712//OS: Solanum lycopersicum /GENE: LeACS2/RE: RIN BS /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: THI2.2.2 |LOCUS: AT5G36910 |PROD: thionin (THI2.2) |complement(14579047..14579980) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.32 C - 0.17 1 ttgtggatgc aaatttgtcg aacaactagt atttaagcca atcttgttgc 51 atggccatct cccctgacga acaccattaa agattcatct atatgtggta 101 gccactgagt agacttaata gagcattaaa taaatgaaat tcgtggatgc 151 aaattgtaga agaactagta tttaacggag tgttgcttca tcacaaattc 201 ATCAAGATAA GCTTATAGTT ATCACTAAGA GTTTTGTCTA CGTACATTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.009 -strand +1 : -10 TGAATTTGTGA AC RSP00792 Mean Expected Number 0.005 -strand -147 : -156 CCAtGCAACA AC RSP01776 Mean Expected Number 0.009 +strand -128 : -118 ACcATTAAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RIO1 family protein |LOCUS: AT5G37350 |PROD: the same as GENE |14810234..14813257 |SUPPORT | 11 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +33 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.23 T - 0.32 C - 0.20 1 aagaacccac gtgagcatca cgtgtttgtc ttttgtttat tgtttatctt 51 cgggtcgggt aaaccaatcc tactcaccgc caagaattgt tcttgtccgg 101 tctggtttag ttaaactgtt caaaaccgaa acctaaacga cgtcgttttg 151 tctgagtaaa gaaaagggtt ttcgactggt gaattcttct tctgattctc 201 GTCGCCGGTA GTTGTTTCCA CGAAAAACAA GTGATGGAGG AAGTAGTGGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.002 +strand -139 : -130 AACCAATCCt AC RSP00640 Mean Expected Number 0.002 -strand -187 : -194 TCACGTGG AC RSP00652 Mean Expected Number 0.003 +strand +5 : +12 CCGGTAGT AC RSP00978 Mean Expected Number 0.003 +strand -184 : -175 ATCACGTGTT Totally 4 motifs of 4 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 626. Group TF: C1 /AC: RSP00652//OS: Zea mays /GENE: a1/RE: C1 DBS /TF: C1 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATARLA1A |LOCUS: AT5G37680 |PROD: ADP-ribosylation factor, putative |complement(14986826..14988458) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.28 C - 0.20 1 tataaatttt tgttagttat tctttgcaaa tttcccataa aagaaataaa 51 aggaacacac aaaaaaaaaa agaatggtga catctaaaat tctaaaagca 101 ACAATagcgt gacaccaaga gtgaaggaag agacaccgtt ttcacaaact 151 gacaaattct attaccttaa gtaaggtcca gattcttccc tgttcctctt 201 CCTCTCTGTT TCTCTCATTA CCCATCTAGC AAAATTCAAG AATCGAACTA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00863 Mean Expected Number 0.001 -strand +7 : -2 AGAGAGGAA Totally 1 motifs of 1 different REs have been found Description of REs found 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: TCH2 |LOCUS: AT5G37770 |PROD: |complement(15016084..15016849) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.36 C - 0.21 1 tctttttatt attggtaaat aaacattttg gaagcataaa atatgtaaag 51 taaataaatc tttggaaagt aaataaattt agaattaata aagatgccac 101 cagctcacGC AATctcaacg cgttttaatt aaaaaaacgc gttattacgt 151 caccctctct ctttccctta tttataacca aatccttctt cttcacacac 201 ACACTACTCT AACCGTTTTT TTTCTTCTCT CAAATCTCAA AATCTCAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00055 Mean Expected Number 0.006 +strand -120 : -109 AGAATTAaTAAA AC RSP00085 Mean Expected Number 0.008 +strand -198 : -183 TTTtTATTATTGGTAA AC RSP00085 Mean Expected Number 0.008 -strand -183 : -198 TTACCAATAATAaAAA AC RSP00112 Mean Expected Number 0.005 -strand -49 : -56 TGACGTAA AC RSP00394 Mean Expected Number 0.009 +strand -157 : -151 TGTAAAG AC RSP00428 Mean Expected Number 0.003 -strand +21 : +10 AAAAAACGGTTA AC RSP00495 Mean Expected Number 0.003 +strand -157 : -150 TGTAAAGT AC RSP00948 Mean Expected Number 0.009 +strand -187 : -181 GGTAAAT AC RSP01114 Mean Expected Number 0.010 -strand -170 : -176 CCAAAAT AC RSP01475 Mean Expected Number 0.001 -strand -170 : -178 CCAAAATGT Totally 10 motifs of 9 different REs have been found Description of REs found 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 377. Group TF: PBF-1 /AC: RSP00394//OS: Zea mays /GENE: gamma-27kDa zein/RE: P-box (s) /TF: PBF-1 ||Identical REs AC: RSP00396 RSP00429 RSP01402 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 877. Group TF: GT-2 /AC: RSP00948//OS: Oryza sativa /GENE: PHYA/RE: GT3-bx /TF: GT-2 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: protein kinase family protein |LOCUS: AT5G37790 |PROD: the same as GENE |complement(15025402..15028382) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.04 T - 0.35 C - 0.22 1 aactcaataa ttcaaaacca aaaagaaaaa tcattaatta tacctaatta 51 attccccctt cttctcttgt tttttcttgc ttaagatcac accaacaact 101 taacggtata agaaaaatta aaataaaact aatgtttcca ccttccacca 151 ctaatcacac attaatttaa ttaaatcttc ttcttcttct tcttccaatt 201 ATAAACTTTA TAAGAAAAAT AAATACATAT TCTCTTTCTC TTCCATCAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00618 Mean Expected Number 0.005 -strand -95 : -100 CCGTTA AC RSP00716 Mean Expected Number 0.008 +strand -188 : -180 CAAAACCAA AC RSP00861 Mean Expected Number 0.005 -strand +39 : +31 AGAAAGAGA AC RSP01233 Mean Expected Number 0.008 -strand -120 : -126 AGCAAGA Totally 4 motifs of 4 different REs have been found Description of REs found 594. Group RE: 16 KK /AC: RSP00618//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: 16 KK /TF: unknown ||Identical REs AC: RSP00835 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ASF1-like anti-silencing family protein |LOCUS: AT5G38110 |PROD: the same as GENE |15225702..15227445 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +171 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.30 C - 0.27 1 tagcccatgg gccttaaaac ttaagtatta ttagttaaaa tggcctcgat 51 ttcaattcct tttatatttc cctcttctaa ttgaggtttt aaagctctcc 101 cgCCAATata gttgaccggt aactaccggt tattagcctt ataccaaccg 151 gttaaaaaaa aaccacccaa taactggcaa attgaaatcg ctctaaccac 201 GAACCGTCTC TGAATCTGAC CGACCACCAT TCTTCTCGCG CCGGCGATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00652 Mean Expected Number 0.002 -strand -72 : -79 CCGGTAGT AC RSP00988 Mean Expected Number 0.001 +strand -104 : -93 CTCCCGCCAAtA AC RSP00989 Mean Expected Number 0.001 +strand -105 : -97 TCTCCCGCC AC RSP01103 Mean Expected Number 0.002 -strand -112 : -119 AAACCTCA Totally 4 motifs of 4 different REs have been found Description of REs found 626. Group TF: C1 /AC: RSP00652//OS: Zea mays /GENE: a1/RE: C1 DBS /TF: C1 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 910. Group TF: E2F/DP /AC: RSP00989//OS: Zea mays /GENE: RBR3/RE: E2F/DP IV /TF: E2F/DP 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted protein, rice |LOCUS: AT5G38300 |PROD: the same as GENE |15323162..15324238 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.16 T - 0.25 C - 0.18 1 aaccaacgat cagatagatt aatgatgatt aaggaaatta atgaccgtcg 51 atcaaagatt tactgggtcc cacactacca aaataagacc gttagacgta 101 agcaaagaaa aaaagaagaa gggtaaaatc gtcaacagaa gaaaatctct 151 aaagaatctc tctaattttt ctatgagacc gttgagaaac cctttttacc 201 ATTAAATAAA GTCTTTTTGC AAACAACAAA ATCTGGTTAA CCAAAATAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00249 Mean Expected Number 0.000 +strand -25 : -17 AGACCGTTG AC RSP00471 Mean Expected Number 0.000 -strand -126 : -136 GTGTGGGaCCC AC RSP00837 Mean Expected Number 0.001 -strand -147 : -156 tGATCGACGG AC RSP00838 Mean Expected Number 0.008 +strand -156 : -151 CCGTCG AC RSP01032 Mean Expected Number 0.002 +strand -123 : -114 CCAAAATAAG Totally 5 motifs of 5 different REs have been found Description of REs found 242. Group RE: MSA /AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/RE: MSA /TF: unknown 449. Group TF: Alfin1 /AC: RSP00471//OS: Medicago sativa /GENE: MSPRP2/RE: Alfin1 BS1 /TF: Alfin1 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DNA repair protein RAD23, putative |LOCUS: AT5G38470 |PROD: the same as GENE |15421872..15424941 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.37 C - 0.23 1 atctccacta cattccatac acctttttta atctaacggc tcacaaacaa 51 taaaactctc cgaataagta atcaccacgt gatttatctt gacacaccaa 101 agtttgtata gacgtgcatg tatgtaatta attaaccttt tatgtactat 151 gaattaactg tgttgatata taaagggtga ctcaataccc caaaagcggt 201 CTCTCTCTAT ACTTTGCTTC TCTCTCTAAA CTTCTCTCTT TCTTTTTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.003 -strand -81 : -87 CATGCAC AC RSP00423 Mean Expected Number 0.008 +strand -90 : -85 GACGTG AC RSP00424 Mean Expected Number 0.008 -strand -85 : -90 CACGTC AC RSP00640 Mean Expected Number 0.001 -strand -119 : -126 TCACGTGG AC RSP00861 Mean Expected Number 0.007 -strand +43 : +35 AGAAAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +8 : -1 AGAGAGAGA AC RSP00978 Mean Expected Number 0.002 -strand -118 : -127 ATCACGTGgT AC RSP01237 Mean Expected Number 0.006 -strand -26 : -35 CTtTATATAT AC RSP01699 Mean Expected Number 0.008 +strand -124 : -118 ACGTGAT Totally 10 motifs of 9 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547 405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT5G38520 |PROD: the same as GENE |15438804..15440661 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.27 C - 0.22 1 gctccatttc ggtttctatc cggattcgcg gtggattctc ctcccacccc 51 aatcatcggt tcatttcagc atttggttat atccaaatta ttttaaccgg 101 tttataccga aactactcga accagacaat ctttgATTGG tagaaagaga 151 gccacgtagg attatctctt ctaatggcaa attaaccaaa aacgtaactg 201 AAGATCAAAA GAGAAAGAGA GAAAAAAGAC GATGAGAGCT CTAACATGGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -43 : -50 TACGTGGC AC RSP00122 Mean Expected Number 0.010 +strand -160 : -154 CTCCCAC AC RSP00247 Mean Expected Number 0.005 +strand -50 : -41 GCCACGTAgG AC RSP00861 Mean Expected Number 0.002 +strand -59 : -51 AGAAAGAGA AC RSP00861 Mean Expected Number 0.002 +strand +12 : +20 AGAAAGAGA AC RSP01034 Mean Expected Number 0.008 -strand -44 : -50 ACGTGGC AC RSP01259 Mean Expected Number 0.002 -strand -42 : -49 CTACGTGG Totally 7 motifs of 6 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: proteasome maturation factor UMP1 family protein |LOCUS: AT5G38650 |PROD: the same as GENE |complement(15488192..15490025) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.27 C - 0.15 1 ttaaaaaaag tatcaaatta agcacataag ttagaaaaga aaaatgtgtt 51 gtaagaaaga aaaaaggtta ggaaagaaat atgcgacaga aaaaagagtt 101 ttatgggctt acaaataaga aaagcccaaa tgggccttga gtttgagctt 151 tacataaaat tcattctact aaacttaagc aaaatcattc cttcttcttt 201 CTCTGAAACT TTTGCCTTGC TTGCTTGCCC AGAAAGTCGC CGAGAAAGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.004 +strand -179 : -170 GCACATAaGT AC RSP00296 Mean Expected Number 0.000 +strand -97 : -73 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -73 : -97 TGGGCT-- ** bp --AGCCCA AC RSP00979 Mean Expected Number 0.007 -strand -95 : -104 CCATAaAACT Totally 4 motifs of 3 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G39410 |PROD: the same as GENE |complement(15785072..15787638) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +136 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.32 C - 0.18 1 acaagtttaa cattttccta aggtagtaag gtagttacat cttagttaca 51 ctacgtgccg ctctttgtct atatctaaat ctgagacagc gtgtagttct 101 cgtaatatga gtacaaatgg tgtgtgaagt caagtgttac tatttgatat 151 accaatcaaa atcaaatcag attattattc cttaaattac aatttcactc 201 ACAATGACGT GTAACGTCGA CGTTGTCGGT GGACACAAAG CTCCATAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.010 -strand -4 : -14 TGAAATTGTaA AC RSP00066 Mean Expected Number 0.000 +strand -148 : -140 ACGTGCCGC AC RSP00559 Mean Expected Number 0.005 -strand -10 : -20 TGTAATTTaAG AC RSP01258 Mean Expected Number 0.003 +strand +5 : +12 TGACGTGT AC RSP01275 Mean Expected Number 0.003 -strand +13 : +4 TaCACGTCAT AC RSP01654 Mean Expected Number 0.006 +strand +3 : +12 AATGACGTGT AC RSP01724 Mean Expected Number 0.000 -strand +27 : +16 GACaACGTCGAC Totally 7 motifs of 7 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 65. Group TF: EmBP-1 /AC: RSP00066//OS: Triticum aestivum /GENE: Em/RE: Em1b /TF: EmBP-1 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1532. Group TF: STF1/HY5 /AC: RSP01724//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted protein |LOCUS: AT5G39520 |PROD: the same as GENE |complement(15840681..15842720) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.27 C - 0.20 1 tctcatccac gaccgaatgc gtaaaagact gagtaagcaa atatagattt 51 caagactttg ataacatgta acgtcttgta attacgccac gtggacgtaa 101 aagaccaaat aaaCCAATat tccaaatctc taccgtgacg gttttattca 151 ctgtctcttt ctcaatcttc cacaaaagtc tcaacgtata gagagaaacc 201 AAGACGCAAT CTTTTAGTAT AGATAGATTG AGAGATAAAG ATATGTGGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.001 +strand -115 : -106 GCCACGTGGa AC RSP00073 Mean Expected Number 0.001 -strand -106 : -115 tCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -114 : -105 CCACGTGGaC AC RSP00153 Mean Expected Number 0.001 -strand -107 : -116 CCACGTGGCg AC RSP00175 Mean Expected Number 0.001 -strand -108 : -115 CACGTGGC AC RSP00189 Mean Expected Number 0.002 -strand -106 : -115 TCCACGTgGC AC RSP00340 Mean Expected Number 0.004 -strand -106 : -115 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 +strand -115 : -106 GCCACGTGGA AC RSP00683 Mean Expected Number 0.004 +strand -115 : -106 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -114 : -107 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -107 : -114 CCACGTGG AC RSP00784 Mean Expected Number 0.000 -strand -106 : -115 TCCACGTGGC AC RSP00861 Mean Expected Number 0.001 -strand -39 : -47 AGAAAGAGA AC RSP01034 Mean Expected Number 0.005 -strand -109 : -115 ACGTGGC AC RSP01602 Mean Expected Number 0.005 +strand -41 : -34 TCTCAATC AC RSP01602 Mean Expected Number 0.004 -strand +33 : +26 TCTCAATC AC RSP01734 Mean Expected Number 0.009 -strand -106 : -112 TCCACGT Totally 17 motifs of 13 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ANAC092 |LOCUS: AT5G39610 |PROD: no apical meristem (NAM) family protein |complement(15875628..15877011) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.36 C - 0.18 1 taagataaca gattttcttt ttctttatag taggtaaaac tcttgaattt 51 caatacaaat aattgttcta aagaagaact tgatacgaaa aaattgacca 101 attATTGGtc aatatattaa aaagaataaa ttattttagt gttcttattt 151 ctcaaatgaa aactagtata tagagaggag cttcgttgct caaacacttt 201 CCTCTCTCTT AAAAACCTCA ACTTTCTTCT CTCTTCTCAA AAACCCTTCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 -strand -101 : -110 TGGTCAATTT AC RSP00468 Mean Expected Number 0.001 -strand -100 : -110 TTGGTCAATTt AC RSP00653 Mean Expected Number 0.003 +strand +27 : +37 TTCTCTCTtCT AC RSP00744 Mean Expected Number 0.000 +strand -172 : -161 AGtAGGTAAAAC AC RSP00863 Mean Expected Number 0.001 -strand +7 : -2 AGAGAGGAA AC RSP00894 Mean Expected Number 0.010 -strand -152 : -159 AATTCAAG AC RSP01014 Mean Expected Number 0.008 +strand -48 : -39 CAAATGAAaA AC RSP01015 Mean Expected Number 0.008 +strand -48 : -39 CAAATGAAAa AC RSP01060 Mean Expected Number 0.007 +strand -102 : -94 CAATTATTG AC RSP01060 Mean Expected Number 0.007 -strand -94 : -102 CAATAATTG AC RSP01077 Mean Expected Number 0.004 -strand -94 : -102 CAATAATTG AC RSP01103 Mean Expected Number 0.008 +strand +13 : +20 AAACCTCA AC RSP01482 Mean Expected Number 0.001 +strand -110 : -100 aAATTGACCAA Totally 13 motifs of 12 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 706. Group TF: GT-1 /AC: RSP00744//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 4 /TF: GT-1 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G39760 |PROD: the same as GENE |15928644..15930058 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +127 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.07 T - 0.42 C - 0.19 1 ataaatttag tttaatacaa ttgtcctttt tcaaaatatt atttctttat 51 ttgcttcagc aacagtcgtc atagtcatca tatcattttc ttcttttcct 101 cctctaaacg aatattaCCA ATaaaaaatc aagtggaaaa tatgtaatat 151 taaaaaatct ccaacagctt aagaagttag aaccttttta cttatcttta 201 TTTCTTCTTC TTCTTCATTT TTCTATTCAC ATTCTCTGAA ACTCATACCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.001 -strand -65 : -71 CCACTTG AC RSP01130 Mean Expected Number 0.007 +strand -148 : -135 GCT-- +7 bp --CAGT AC RSP01236 Mean Expected Number 0.001 +strand -132 : -123 TCATAGTCAT AC RSP01639 Mean Expected Number 0.009 +strand -182 : -173 AATTGTCCTT Totally 4 motifs of 4 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 1049. Group TF: ZPT2-2 /AC: RSP01130//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 4 /TF: ZPT2-2 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G39890 |PROD: the same as GENE |15991621..15993498 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +150 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.34 C - 0.24 1 ttcaaaaaag gatgatttaa ggggcaataa taatatttaa aaaaactgtg 51 tttagtgatg aaacaaaacc cgccgttgga aattaaacca gcccatagag 101 agaaaaacct ctcttaacga agaaaaacaa caacatggcc cctggtttct 151 cttctctttc gaatctatct tcttctttta tccaatcctt tcctattttt 201 ATTCTCACCT TCTCCTCGTT TTTCCCGAAA CTGTTCTTTT GCCCTCTTCT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: MYB24 |LOCUS: AT5G40350 |PROD: myb family transcription factor (MYB24) |complement(16155774..16158362) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.32 C - 0.13 1 aagaatgatt atacaatctt acacatacat gttaaattat atgcatgtag 51 aaagaaaata gaactatata tataatatga tcatagttag gtcttgaagc 101 tgcactagct ccccatgtgt tatgaaaatt tataaaataa agtaaaaacg 151 acaatatgtg tcgctaatta gtatctaaaa gacatttaag attttggatt 201 AAAGGTTATT AACAATGCCT TAAACTCTTG AAAAACCTTC TCTATAAAAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.009 +strand -152 : -144 AGAAAGAAA AC RSP01008 Mean Expected Number 0.008 -strand -109 : -115 ACCTAAC Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 933. Group TF: PtMYB1; PtMYB4 /AC: RSP01008//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 3 (AC-III) /TF: PtMYB1; PtMYB4 ||Identical REs AC: RSP01455 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glutaredoxin, putative |LOCUS: AT5G40370 |PROD: the same as GENE |complement(16164833..16166382) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.35 C - 0.22 1 atcagctgtt cttgaattag caaagatttc caatttaaac gtgccagaca 51 ttcaccaacc tgacgatcga aaaatgatag aaacaaggcc caataaagcc 101 cattaaacaa atctaacgtt tgttttattt tgaaccttga tgactttttg 151 acttttgact cggtttacaa atatcatcca tttagcgttt ttataaagcc 201 GACTGATTCG CTTCTCTTAC TACTTCAATT TCATTTCTTT CTCCTCAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00366 Mean Expected Number 0.001 +strand -60 : -49 TGACTTTtTGAC AC RSP00653 Mean Expected Number 0.006 +strand +35 : +45 TTCTtTCTCCT AC RSP00713 Mean Expected Number 0.007 -strand -193 : -199 CAGCTGA AC RSP00860 Mean Expected Number 0.007 -strand +42 : +34 AGAAAGAAA AC RSP00894 Mean Expected Number 0.009 -strand -183 : -190 AATTCAAG AC RSP01017 Mean Expected Number 0.006 +strand -122 : -115 AGAAACAA AC RSP01687 Mean Expected Number 0.005 -strand +1 : -6 CGGCTTT Totally 7 motifs of 7 different REs have been found Description of REs found 351. Group RE: ERE /Group TF: TDBA12 /AC: RSP00366//OS: Nicotiana tabacum /GENE: CHN50/RE: ERE /TF: TDBA12 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1505. Group RE: CARE E /AC: RSP01687//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE E /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G40460 |PROD: the same as GENE |16219475..16220160 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +218 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.09 T - 0.41 C - 0.25 1 cgaaccaaaa ctctcaaact atggcgccaa acaaaagacg gtggttgcga 51 ctctgcccgt aaaatttctc gggcacctaa atttttattc tttttaaatt 101 tCCAATttta tccctttttt tcttcatctt cttcgcaaag cttttttctc 151 ctgaatatta ttttgactat ttaaaccctc tctttatctc aatttcctct 201 CATTTGTTTT TTCTCATTCT TCTCAACAAC AAAAAAAATT CTTCCTTTCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00187 Mean Expected Number 0.006 -strand -157 : -161 CCACC AC RSP01755 Mean Expected Number 0.000 -strand -154 : -161 CAACCACC Totally 2 motifs of 2 different REs have been found Description of REs found 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SDH2-2 |LOCUS: AT5G40650 |PROD: succinate dehydrogenase, iron-sulphur subunit |16298632..16300755 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.36 C - 0.19 1 acacgcgcat ttcagaactt atccattaat ctctgtgatt aacctataag 51 ccggtattta taaacggtca cgattttcca agttttttaa tcaacggtcg 101 ttattacgta gacgaagcta agcctcacat ctacaaatac gtatacatac 151 atttttacat aataattaat taataattac aggttattaa caaattaatc 201 ATTTTTAATA GACTATTAAA AAAACAATTT CATTTCATTT GCTCTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.002 -strand -139 : -150 TATAAATACCgG AC RSP00523 Mean Expected Number 0.002 +strand -200 : -194 ACACGCG AC RSP01559 Mean Expected Number 0.006 +strand -198 : -193 ACGCGC Totally 3 motifs of 3 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATP12 protein-related |LOCUS: AT5G40660 |PROD: the same as GENE |complement(16300739..16302554) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.34 C - 0.11 1 agtttattta atttacggat gaaacaatac atatcacata atgaattggt 51 gtaagtgtaa ctcttgaaaa ttatagaaaa gtttacaaac taaatttagC 101 CAATtttttt aaaaaagatt gtctatataa cccaaatgat atttgtcaaa 151 aaattcttta caaatattat attacagagc tgattacaat gagatagaat 201 AAAATTGTAA TTATAATCAC AATTATCAAA ACACCTTCAT TGTAGTAGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01150 Mean Expected Number 0.002 +strand +9 : +19 AATTATAATCA Totally 1 motifs of 1 different REs have been found Description of REs found 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G40670 |PROD: the same as GENE |16302939..16305013 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +257 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.26 C - 0.20 1 gtaaattaaa taaactaaag tattcttacc caaataagta aattttatta 51 ctctaaatcc aaaagttttg ttaattaagt gatccgagtc ccgagaaaaa 101 aatgatccga gtcaaaaatg ctgaaactta actcaaaacg gcatcgtttt 151 agccgccggt ttcaaaactt taaagaaaga acgtaaccat aaagagcgcc 201 AGATTCAGAG ATAAGGCTCA TTAAAATCAC CTGCTTCACC CATCACGCTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 +strand -50 : -44 AGCCGCC AC RSP00438 Mean Expected Number 0.008 -strand -44 : -49 GGCGGC AC RSP00459 Mean Expected Number 0.005 -strand -86 : -95 TTGACTCGGA AC RSP00807 Mean Expected Number 0.008 +strand -49 : -44 GCCGCC AC RSP00842 Mean Expected Number 0.001 -strand -90 : -97 CTCGGATC AC RSP00842 Mean Expected Number 0.001 -strand -113 : -120 CTCGGATC Totally 6 motifs of 5 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 787. Group RE: dOCT /AC: RSP00842//OS: Zea mays /GENE: H3C4/RE: dOCT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G40690 |PROD: the same as GENE |16307939..16308811 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.43 C - 0.20 1 ccttttgttt tttgttttct ttttctagaa gaagacaaat tccaataatt 51 gaatagtgga aggaagttat ctacacaact catttggttt ggtccacaag 101 cttcacttta gggaattcgt cttgactttt gactattcct tgtcccgcaa 151 gtatattcct cttcttgtta tatccttcaa gcaacctttt ttatcatttc 201 ACATCTTTCT TCTTCCTTTT TTTTGTGTGT GGTTAAGGTC TCATCGATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00943 Mean Expected Number 0.005 +strand -7 : +4 TCATTTCACAt AC RSP01060 Mean Expected Number 0.004 +strand -158 : -150 CAATAATTG AC RSP01060 Mean Expected Number 0.004 -strand -150 : -158 CAATTATTG AC RSP01077 Mean Expected Number 0.001 +strand -158 : -150 CAATAATTG AC RSP01234 Mean Expected Number 0.007 +strand -24 : -18 TCAAGCA AC RSP01596 Mean Expected Number 0.005 -strand +4 : -7 aTGTGAAATGA AC RSP01757 Mean Expected Number 0.004 -strand -75 : -82 GTCAAGAC Totally 7 motifs of 6 different REs have been found Description of REs found 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATPHB3 |LOCUS: AT5G40770 |PROD: prohibitin |complement(16332078..16333918) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.35 C - 0.23 1 tatgagacaa aaagatatta aacatactct gtaaccgtta agctgttttc 51 agcccaatgt catgaaaccc attattgaat ttagttctta ataggcttat 101 atagtcacat aataatATTG Ggctaagtta cttggcccat taaatcattt 151 cccgtggtag gttccagaaa catatcataa accctagcag aaactctttc 201 CTCTCTCGTC GTCTCAAATC TCTTCTTCCT TCTTCTTCTC TCTCGATTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.000 -strand -187 : -197 CtTTTTGTCTC AC RSP00773 Mean Expected Number 0.004 -strand -54 : -63 TGATTTAATG AC RSP00863 Mean Expected Number 0.003 -strand +6 : -3 AGAGAGGAA AC RSP00892 Mean Expected Number 0.003 -strand -180 : -188 TTAATATCT AC RSP01016 Mean Expected Number 0.006 +strand -35 : -28 AGAAACAT AC RSP01174 Mean Expected Number 0.002 +strand -1 : +10 CCTCTCtCGTC AC RSP01453 Mean Expected Number 0.002 -strand -39 : -45 ACCTACC Totally 7 motifs of 7 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 729. Group RE: Box III /AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/RE: Box III /TF: unknown 799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G41050 |PROD: the same as GENE |complement(16450545..16451546) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +242 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.36 C - 0.26 1 cacttcactt tcagtggtcc atacacatat atatacacac tagtggctta 51 ccttctccct tccattttcc agttttagcc attttttata aggggattca 101 tagacaaaaa cccttaaaat agagagcatg agagcTCAAT aaatgttaaa 151 cctaaccaac caatctctca gtttctctac ttttccttta attggcctct 201 CATCTCTTTG TGCCTCTCTT TACTCATCTC TTTTTCCACA AGAGTCTTGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.008 +strand -43 : -34 AACCAATCtC AC RSP00840 Mean Expected Number 0.009 -strand -154 : -159 GCCACT AC RSP01210 Mean Expected Number 0.006 -strand -79 : -88 CTATTTTAAG Totally 3 motifs of 3 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 785. Group RE: CAT /AC: RSP00840//OS: Arabidopsis thaliana /GENE: H4A748/RE: CAT /TF: unknown 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G41810 |PROD: the same as GENE |16755290..16756891 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +240 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.33 C - 0.17 1 atttggccac atgagataat tatgtatttt actagaaaaa tgttaaatta 51 gagccaaaaa ttccaaaatt tcaaccaaaa acttagaatt tttatttgtc 101 tttcactaag aacgtcgtta tcgtgggatt aaatatttaa ttaataaaca 151 ttagctgcaa tactttcatg ttcatacata tataaatgtt aaatgatcag 201 ACCGTGAAGC CCATAAGACC ATTCATAATT AACCACCAAG TACCCACTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.004 +strand +41 : +50 tACCCACTTC AC RSP01221 Mean Expected Number 0.004 +strand +30 : +37 TAACCACC Totally 2 motifs of 2 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G41950 |PROD: the same as GENE |16802942..16806741 |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.32 C - 0.19 1 tgttacataa aatgtgataa aaaccgttgt cctaaaacgc atgaaaatgt 51 cttcactatt gctaaaatta aatgtagaaa aacttagcca aacgagaacc 101 cgctgaggct aaaagaagga cttgacttta tttggtttta agagcctctg 151 gttgagctag aggtgtataa ctgtaacaaa ctaactattc ttcgttttca 201 ATTTCCAGAT ACATCAGATC TCTTCTTCAT CTTCTTCCTC TTGGGAGACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01209 Mean Expected Number 0.006 +strand -75 : -66 CTTTATTTGG AC RSP01642 Mean Expected Number 0.005 +strand -156 : -147 AAATGTCTtC Totally 2 motifs of 2 different REs have been found Description of REs found 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42030 |PROD: the same as GENE |complement(16828623..16830333) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.43 C - 0.16 1 cttttttcaa tttttaaatc ctcgtaataa atttaatata ttatttttca 51 gtctttaatg aaatgtaatt tggtattatt agttactaac atttaaaaga 101 aaataATTGG cttgtaaaga acgtatggaa tgtgtcgagt atgtgtgtat 151 agtgtctcca cttggatctt tcttacttac tccattatct tcttctctct 201 CTTTCCCTCA TCTCATTAAT GGCGAGCTCT ACATCTTTAG CGATAGTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.007 +strand -43 : -37 CCACTTG AC RSP00653 Mean Expected Number 0.006 +strand -8 : +3 TTCTCTCTCtT AC RSP00683 Mean Expected Number 0.003 -strand -35 : -44 tCCAAGTGGA AC RSP00864 Mean Expected Number 0.003 -strand +2 : -7 AGAGAGAGA AC RSP01458 Mean Expected Number 0.007 -strand -182 : -194 ATTTAAAAATTgA Totally 5 motifs of 5 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42050 |PROD: the same as GENE |16832717..16834521 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.09 T - 0.39 C - 0.22 1 tacagaagta cttgtgtctt gtatttatta gtattcctta tttaataaat 51 tacttttcac ttaatcatcc aactttgtca gattcacacg caaccttgaa 101 aaaataaaat agaatggtAT TGTgactttc gtggaaattt ctacttagat 151 gacacagttg ctccaattaa aagcttacaa ctttttcttc atctttcttt 201 ATATTTCTCA CCCATTTTTC ACCAATTTCT CTCCACTTAA AACCAACCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00332 Mean Expected Number 0.004 +strand -87 : -80 ATGGTATT Totally 1 motifs of 1 different REs have been found Description of REs found 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42070 |PROD: the same as GENE |complement(16836215..16837423) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.42 C - 0.14 1 acatccacat agattagatt ttctctattc cctttattta attactataa 51 aatgtatttt tcgcatatga taatttttct gtaacaatag tataatatta 101 aacattctac ccaaaaaaag agtataatat ttaaatatga ttaCCAATaa 151 gaaaaaaatt ctaatagttt aaaataaaaa tttgtaatgt actctttttt 201 ATTTTGTTTT GCGTTTCTGA ATTTGTGGCC ATTATCTTCT CACACTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand +18 : +28 TGAATTTGTGg AC RSP00280 Mean Expected Number 0.002 +strand -197 : -188 TCCACaTAGA AC RSP00404 Mean Expected Number 0.008 +strand +8 : +14 TTTGCGT AC RSP00445 Mean Expected Number 0.009 +strand -87 : -78 AAAAAAGAGt AC RSP00596 Mean Expected Number 0.004 -strand +29 : +24 GCCACA AC RSP00756 Mean Expected Number 0.002 +strand +39 : +46 CTCACACT AC RSP01032 Mean Expected Number 0.004 +strand -90 : -81 CCAAAAAAAG AC RSP01209 Mean Expected Number 0.003 -strand -81 : -90 CTTTTTTTGG Totally 8 motifs of 8 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42090 |PROD: the same as GENE |16843926..16845682 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.32 C - 0.16 1 tatcactcta caactccttc aaatacactg gaaacgccgg ccattcggtt 51 ggaatcggtg aattggtgaa atttttgttt ctagaaatca actaatccgt 101 caaagatggt ttattccctt aatgatgaag gaaaatgggt tctcttgttg 151 ctaataaaat aatggtattt attttgtttc ttagaaagaa aaaaaagact 201 AATTTAATTT GGTTGGTCAC ACACAACCGT TTTCATCGGA AGAAGAACAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00019 Mean Expected Number 0.002 +strand -97 : -86 AGATGGTtTATT AC RSP00115 Mean Expected Number 0.010 +strand -120 : -110 cTAGAAATCAA AC RSP00332 Mean Expected Number 0.010 +strand -39 : -32 ATGGTATT AC RSP00860 Mean Expected Number 0.004 +strand -18 : -10 AGAAAGAAA AC RSP01017 Mean Expected Number 0.008 -strand -20 : -27 AGAAACAA AC RSP01017 Mean Expected Number 0.008 -strand -119 : -126 AGAAACAA AC RSP01454 Mean Expected Number 0.009 -strand +17 : +11 ACCAACC Totally 7 motifs of 6 different REs have been found Description of REs found 18. Group TF: GT-1 /AC: RSP00019//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box5 /TF: GT-1 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glycosyl hydrolase family 17 protein |LOCUS: AT5G42100 |PROD: the same as GENE |complement(16846379..16848467) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.32 C - 0.28 1 acaagaatga tctgtcataa gagaagtgag aatccgagag gaagcaaaac 51 aagaaagatg ctctctcctc tactgcttgc tccagagaca ctgacttcca 101 gctcatccaa accaacatta ctctttctct ttcttctttT CAATtatttc 151 tttattacta tttcactttg aaatttagtg aatcctaacg ctctggtccc 201 ATCACTGCCT CCTCTATCAT CTTGCTCACA ACCACTCACT ACGCTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00385 Mean Expected Number 0.006 -strand -27 : -34 ATTTCAAA AC RSP00635 Mean Expected Number 0.002 +strand -6 : +2 GGTCCCAT AC RSP00861 Mean Expected Number 0.006 -strand -67 : -75 AGAAAGAGA AC RSP01600 Mean Expected Number 0.006 -strand -28 : -35 TTTCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42150 |PROD: the same as GENE |16863378..16865507 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.32 C - 0.16 1 ttaaaaatcg taaagatttc caaatttcat aagtttgaaa tcaatttaat 51 gcataaacca taaaagcccc taaatatttt attaaaatgt atttttatac 101 aagagataat ttcaaagtca aaataatttt tttttttaaa gtattttcgc 151 aaacagcctt acgaataatc taaaaggctc tggaagtaaa tcgtggacac 201 AGCTTAAACC CTAAGAACCC TTTCGTTGAA TAAACAAAAA ATCAAACGCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.003 -strand -134 : -143 GCTTTTATGG AC RSP00279 Mean Expected Number 0.004 -strand +14 : +6 TTAGGGTTT AC RSP00369 Mean Expected Number 0.004 +strand +6 : +14 AAACCCTAA AC RSP01303 Mean Expected Number 0.007 +strand +5 : +14 TAAACCCTAA AC RSP01304 Mean Expected Number 0.004 +strand +5 : +14 TaAACCCTAA AC RSP01600 Mean Expected Number 0.010 +strand -91 : -84 TTTCAAAG AC RSP01678 Mean Expected Number 0.008 -strand -117 : -128 tAATAAAATATT Totally 7 motifs of 7 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: kelch repeat-containing F-box family protein |LOCUS: AT5G42360 |PROD: the same as GENE |complement(16953361..16955712) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +488 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.43 C - 0.14 1 ctatacttcc caaatctgat gttaattagt aatatgaggt taatttttta 51 ctattttatt gaaaaagcga tattcttgca attgacccat aattgagtca 101 gcttaatttc catttatttt ttttttgttt tttatttatt tttttagctt 151 ccgctttctg cagtatgatc tatttaaaat aaaataaaaa agggaaaagt 201 GGGAAATCGA TGCGTCAATC TTAGGTCTCC GAGGTCTCAA TTATTTCATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 +strand -15 : -6 AAAAAAGgGA Totally 1 motifs of 1 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42520 |PROD: the same as GENE |17017511..17019835 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +1004 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.36 C - 0.17 1 tggtaattac ataataatac taatagacat tttttatttt atttttttcc 51 aattggtcac ctaattttca acaacaacag tgcaacagta aaacacttac 101 caaatgggtg aaaaaagagt taaaagttta aaaatttgtt tttaccaaac 151 gtaaaaacag ttagaaagaa agaaatccat cttcctcttc cccgatctgt 201 TTCTTCCACA AAGATATTTT TCTTTATTCT CTCGCAGTTC AATTAGGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00144 Mean Expected Number 0.006 -strand -91 : -96 CACCCA AC RSP00279 Mean Expected Number 0.001 +strand +43 : +51 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +51 : +43 AAACCCTAA AC RSP00444 Mean Expected Number 0.000 +strand -39 : -26 tAGAAAGAAAGAAA AC RSP00858 Mean Expected Number 0.007 +strand -199 : -192 GGTAATTA AC RSP00860 Mean Expected Number 0.002 +strand -38 : -30 AGAAAGAAA AC RSP00860 Mean Expected Number 0.002 +strand -34 : -26 AGAAAGAAA AC RSP01071 Mean Expected Number 0.010 +strand -55 : -46 CAAACGTAaA AC RSP01086 Mean Expected Number 0.007 -strand -46 : -55 TTTACGTTTg Totally 9 motifs of 8 different REs have been found Description of REs found 140. Group TF: SEF3 /AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: SEF3 BS 1 /TF: SEF3 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42660 |PROD: the same as GENE |complement(17120152..17123192) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +179 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.11 T - 0.33 C - 0.14 1 gatgttttac ttaaaagcta acaatttaag acaattattt atttcgttaa 51 aaatatcttt taatacttga tttagcaaac tcaactaatg atatgcaaga 101 ttgcatgata gaaataatca taactcataa gtcataagat accaaatcat 151 ttataaattg catagaaagt tgtataacat catatataat gaaacaaaat 201 AAAATCTCTA AAACATCCTA TTGAGACATA AACCGGTTTA ATCGGGTTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00107 Mean Expected Number 0.006 -strand -94 : -100 CATGCAA AC RSP01637 Mean Expected Number 0.002 +strand -191 : -181 CTTAAAAGCTA Totally 2 motifs of 2 different REs have been found Description of REs found 105. Group RE: RY2 /AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY2 /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G42780 |PROD: the same as GENE |17172004..17172985 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.17 T - 0.34 C - 0.21 1 caaaccggct gaacctaagt ttaagtaaat aaggtttgtg ttggacttac 51 ggtctcttgg tttggtttgg tagcccctaa ccaattggtt acgtaattta 101 tttccggtta aacacaagtt ttgttggaaa acggaaactg tgactggtca 151 ctagtcacta tcaagcagcc taaaaagtat cgactcttct ttatcaaaaa 201 AGTTTACACA AACACTTTCT CTCCACTGAA CTCATTTTCT CTCTTCTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.005 -strand -170 : -180 TATTTaCTTAA AC RSP00653 Mean Expected Number 0.005 +strand +37 : +47 TTCTCTCTtCT AC RSP00985 Mean Expected Number 0.008 -strand -181 : -190 AcTTAGGTTC Totally 3 motifs of 3 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PAF1 |LOCUS: AT5G42790 |PROD: 20S proteasome alpha subunit F1 (PAF1) |complement(17176278..17178298) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.15 T - 0.25 C - 0.18 1 aagattctta aacaatttca catttcatca aaaaaaaaaa aaagaatata 51 caaggattat cctgtataaa aacataggcc taaagtctgt ataaaacata 101 tgcctaaagt cttagcCCAA Taagctagat accgagccaa tacaaagccc 151 agaatttaat agaagcccat taaatcgaga gagagatcga gagcatccat 201 GGCTTGAAGG AAAAGAAAAG TTTTGTTTCT GAACTTTCGT CTCTATAAAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00566 Mean Expected Number 0.001 -strand -146 : -155 CCTTGTATAT AC RSP00864 Mean Expected Number 0.002 +strand -23 : -15 AGAGAGAGA AC RSP01017 Mean Expected Number 0.002 -strand +30 : +23 AGAAACAA AC RSP01031 Mean Expected Number 0.008 -strand -193 : -200 AGAATCTT Totally 4 motifs of 4 different REs have been found Description of REs found 542. Group RE: TATA P /AC: RSP00566//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: TATA P /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42850 |PROD: the same as GENE |complement(17198935..17199851) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.30 C - 0.12 1 ttgctaatta tgctatttgt gataattgtc ctaaaaaggg attacaattt 51 ttaaaataag ttaaaatatt aaaacaacca tttgttttta acttttaaag 101 ggaaagaata caatttattt caaaataaAT TGGgccttaa tctgagtagc 151 tcggtccaat aagaaaaggc cttgattaga gcaggtctgg tctaatcaga 201 AAAAGGTAAA CTCGGTAACG AAATCAGAAT TCGTCGGAGA AGAAGAAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.008 -strand -162 : -171 CCTTTTTAGG AC RSP01214 Mean Expected Number 0.002 -strand -162 : -171 CCTTTTTAGG AC RSP01639 Mean Expected Number 0.007 +strand -177 : -168 AATTGTCCTA Totally 3 motifs of 3 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: sterol carrier protein 2 (SCP-2) family protein |LOCUS: AT5G42890 |PROD: the same as GENE |complement(17211500..17213260) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.28 C - 0.18 1 tggttttata attaggggaa ctaacaaata ttaggacaaa atcgcaattt 51 gcagaagatg aaaaaaaaaa ttactgttgt ttggtttctg gtcaacataa 101 ttagtctgct aaatctcccc aaaatagaaa cagatagaaa aacagtaatc 151 atgaggtaag aataagcaaa tagggaagcg tgccagtctc taacaaaaat 201 CTCAATCTTT CCATACTTAT CGATCACGTC ACCTCCTTTG TCTCTATTAC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.002 -strand -117 : -126 CCAAaCAACA AC RSP00916 Mean Expected Number 0.002 -strand +33 : +24 GGTGACGTGA AC RSP00917 Mean Expected Number 0.003 -strand +33 : +24 GGTGACGTGA AC RSP01602 Mean Expected Number 0.005 +strand -1 : +7 TCTCAATC AC RSP01640 Mean Expected Number 0.003 +strand +36 : +45 CTtTGTCTCT AC RSP01654 Mean Expected Number 0.006 -strand +33 : +24 GGTGACGTGA Totally 6 motifs of 6 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G42900 |PROD: the same as GENE |complement(17214869..17217021) |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.37 C - 0.16 1 aaaaaagaaa gaataatcaa gagagaggag aagaggacgg tggaagatat 51 tttgcagttg aagaaaatat ctttgatatt ttttgtgttt gaaatatcta 101 aaaccaaaaa gtttcatctc ttcattccgc caaATTGAct ggtgatgacg 151 tggcaacttt acccacgtgt aaaagcgtct acaactgtat cgtttctttt 201 GATATTTTGT TTCTCTCTTT CTCTCTGATA TTTTTCATTT TCTTCTTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 +strand -33 : -26 TGTAAAAG AC RSP00113 Mean Expected Number 0.000 +strand -55 : -47 TGACGTGGC AC RSP00214 Mean Expected Number 0.001 +strand -55 : -48 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -48 : -55 CCACGTCA AC RSP00248 Mean Expected Number 0.001 -strand -47 : -56 GCCACGTCAt AC RSP00445 Mean Expected Number 0.008 +strand -200 : -191 AAAAAAGAaA AC RSP00524 Mean Expected Number 0.007 -strand -31 : -37 ACACGTG AC RSP00819 Mean Expected Number 0.001 -strand -47 : -56 GCCACGTCaT AC RSP00821 Mean Expected Number 0.001 -strand -47 : -56 GCCACGTCaT AC RSP00847 Mean Expected Number 0.003 -strand -48 : -57 CCACgTCATC AC RSP00861 Mean Expected Number 0.003 -strand +22 : +14 AGAAAGAGA AC RSP00913 Mean Expected Number 0.002 +strand -57 : -48 GATGACGTGG AC RSP00915 Mean Expected Number 0.003 +strand -57 : -48 GATGACGTGG AC RSP00916 Mean Expected Number 0.002 +strand -57 : -48 GATGACGTGG AC RSP00997 Mean Expected Number 0.003 +strand -57 : -48 GATGACGTGG AC RSP01034 Mean Expected Number 0.003 +strand -53 : -47 ACGTGGC AC RSP01255 Mean Expected Number 0.001 -strand -31 : -38 ACACGTGG AC RSP01275 Mean Expected Number 0.003 -strand -47 : -56 gCCACGTCAT AC RSP01280 Mean Expected Number 0.000 +strand -57 : -47 GaTGACGTGGC AC RSP01658 Mean Expected Number 0.000 +strand -57 : -46 GATGACGTGgCA Totally 20 motifs of 20 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATTRX3 |LOCUS: AT5G42980 |PROD: thioredoxin H-type 3 (TRX-H-3) (GIF1) |17259865..17261140 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.12 T - 0.39 C - 0.20 1 tatcaatttc ttctattttc aatgagcata aattacacgc gtcctcagaa 51 gctgaatccg atttgcaatt cttcaatctc aaccgttaga tcaacaaatc 101 cggcatcgaa ttcctccgcg tggtttggtc cattttttta atttgagtat 151 taattctttt cctatttgac aacatgtttt attaattatt attattattc 201 CATTTGCATT AAAATATAAT AAAAAGATGT AAGATTCTCT CCGCCTCCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand +16 : +24 ATAATAAAA AC RSP00130 Mean Expected Number 0.000 -strand -2 : -21 AATAATAATAATAATtAATA AC RSP00143 Mean Expected Number 0.001 -strand -158 : -167 GACGCGTGTa AC RSP00523 Mean Expected Number 0.002 +strand -166 : -160 ACACGCG AC RSP00868 Mean Expected Number 0.010 -strand +21 : +10 TATTATATTtTA AC RSP00996 Mean Expected Number 0.005 -strand -106 : -115 GTTGATCTaA AC RSP01031 Mean Expected Number 0.008 -strand +38 : +31 AGAATCTT Totally 7 motifs of 7 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxisomal membrane 22 kDa family protein |LOCUS: AT5G43140 |PROD: the same as GENE |17338773..17340633 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.24 T - 0.31 C - 0.14 1 gtgttctttt aaaaactgca tgacgtttaa tggaatacga aaaacgctgt 51 cgtttgcttt attgcgtgga gagatatatc aaactttatg tcgtttattg 101 gttttggtta agcactgttt gttgtttgcg tgtATTGAga ctaaaagttc 151 tggtacagag agagagatac atcaaaagta cagtgtaagc tgccgccatt 201 AACGAAGCAT CGGCGAAAAA AGAAGATGAA TATCGTTGGA TTGAGCAAAC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -146 : -159 AAACGACAgCGTTT AC RSP00438 Mean Expected Number 0.005 -strand -4 : -9 GGCGGC AC RSP00716 Mean Expected Number 0.003 -strand -95 : -103 CAAAACCAA AC RSP00807 Mean Expected Number 0.005 +strand -9 : -4 GCCGCC AC RSP00864 Mean Expected Number 0.002 +strand -44 : -36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -42 : -34 AGAGAGAGA AC RSP01046 Mean Expected Number 0.002 -strand +43 : +35 CAATCCAAC AC RSP01071 Mean Expected Number 0.005 +strand -28 : -19 CAAAaGTACA Totally 8 motifs of 7 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC: RSP00809 RSP00811 RSP00814 RSP00921 RSP01328 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: COP1-interacting protein-related |LOCUS: AT5G43310 |PROD: the same as GENE |complement(17396819..17402615) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.14 T - 0.36 C - 0.25 1 ccccacactc acttcctcgg aaaattcgct ctcactcttc cagctggaat 51 ccaaagcaga caatgaagac aaaagcttct ctctctctct cttatttctc 101 catctctcta tgattaaact tggattttct GCAATttgtg tttttcttcg 151 gatgatttct taatctgaaa aagttttgaa gatctttgga taatttagcg 201 ATGAAATCTT CGACTCGGCT TGACTCAGTT GCTTTTCAGC TCACTCCCAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.006 -strand -109 : -117 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -111 : -119 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -113 : -121 AGAGAGAGA AC RSP00864 Mean Expected Number 0.006 -strand -115 : -123 AGAGAGAGA AC RSP01019 Mean Expected Number 0.006 +strand -138 : -132 ATGAAGA AC RSP01283 Mean Expected Number 0.000 -strand -108 : -124 aAGAGAGAGAGAGAGAA Totally 6 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G43430 |PROD: the same as GENE |17470826..17472918 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.34 C - 0.21 1 tagtgttgtt gaagtaatgg actctgatcc actaagacct attatggtat 51 gttgtattgt atgacccatt ttttcaatta tttttttcgg cctaaaccag 101 ccttttacag aagcaaaagg aaaaactgaa acccgagaca tctaaaccgg 151 attaaaccga ataccatgcc atttcttttt gatgagtcat catcaccatc 201 CTTTAGATCC AGAAATCAAA ATTGCTTACT GCTTCATTTG TTCTGCTGTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.009 +strand -87 : -81 CAAAAGG AC RSP00332 Mean Expected Number 0.009 -strand -34 : -41 ATGGTATT AC RSP00664 Mean Expected Number 0.001 +strand -19 : -11 ATGAGTCAT AC RSP00871 Mean Expected Number 0.004 +strand -20 : -11 GaTGAGTCAT AC RSP01058 Mean Expected Number 0.007 -strand -167 : -174 TAGTGGAT AC RSP01278 Mean Expected Number 0.003 +strand -19 : -11 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 -strand -11 : -19 ATGACTCAT Totally 7 motifs of 6 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 318. Group TF: S1F /AC: RSP00332//OS: Spinacia oleracea /GENE: RPL21/RE: S1 /TF: S1F 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G43720 |PROD: the same as GENE |complement(17574393..17576581) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.23 C - 0.23 1 cgattttgat atacaaattc tgataaatct aaaaatcgag caatcaaaca 51 cgaaatcgat ttctgacgaa acgattaagc gacctagggc aaaactggaa 101 tttccataaa ctaatatcac attccgacat accggttaac ccagaaaata 151 atccggttca acctagttgt ttatctccct aatacgcagc gtttcgacgt 201 CCGATTGAAG AGTAACTAAC GCCGAACAAA GAAGAAAAAA CACAACCCCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.003 +strand -38 : -28 CTAgTTGTTTA Totally 1 motifs of 1 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G43750 |PROD: the same as GENE |complement(17597193..17598449) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.27 C - 0.22 1 tatatattgt tgatttcagc aaagacaaag ttgggccgtt tcaatagtct 51 tcacgcgatg taagcgttca ctaaccaact agagaagaca atcaaatgaa 101 tacgttccac gtgacgctta cgaacttgtc agtcactttg gtaatatgac 151 agacagtaac cagtaaacta ctaatctctt tcgctaacga acacacaaaa 201 AAAAAAAGAA CCGTTTTTTC TTTCTATGGC TCCAAAACTC TGAGACAGAG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.003 +strand -95 : -86 TCCACGTGaC AC RSP00428 Mean Expected Number 0.001 -strand +19 : +8 AAAAAACGGTTc AC RSP00640 Mean Expected Number 0.002 -strand -87 : -94 TCACGTGG AC RSP00682 Mean Expected Number 0.001 -strand -86 : -95 GtCACGTGGA AC RSP00860 Mean Expected Number 0.001 -strand +25 : +17 AGAAAGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: acireductone dioxygenase (ARD/ARD') family protein |LOCUS: AT5G43850 |PROD: the same as GENE |complement(17644412..17646385) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.29 C - 0.14 1 gatcattgtg gctcgaaaac ggttgttttt ttcgtgcaaa agaaaaaata 51 acgatttttt attattagaa tttcgaaacc agaattaata aaaattagga 101 gaaaggaaaa taatacgaat taaagtgatc gtacacgtgg ctatcatcga 151 cggaggaaat agccatttat ttatctgatc ttcatcactc tgatgagtct 201 GAAATCAAAA AAGCATTTAC ACAACGAAGA TCATTAATGG CTCTCGAGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -68 : -60 ACACGTGGC AC RSP00022 Mean Expected Number 0.007 -strand -136 : -144 ATAATAAAA AC RSP00055 Mean Expected Number 0.009 +strand -120 : -109 AGAATTAaTAAA AC RSP00175 Mean Expected Number 0.001 +strand -67 : -60 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -69 : -60 tACACGTGGC AC RSP00524 Mean Expected Number 0.007 +strand -68 : -62 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -60 : -69 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -69 : -60 TACACGTGGC AC RSP00862 Mean Expected Number 0.004 +strand -101 : -93 AGAAAGGAA AC RSP00961 Mean Expected Number 0.007 +strand -166 : -159 TGCAAAAG AC RSP01034 Mean Expected Number 0.004 +strand -66 : -60 ACGTGGC AC RSP01255 Mean Expected Number 0.001 +strand -68 : -61 ACACGTGG AC RSP01619 Mean Expected Number 0.000 +strand -86 : -74 ACGAATTAAAGtG Totally 13 motifs of 13 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 54. Group RE: Box 3 /AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/RE: Box 3 /TF: unknown ||Identical REs AC: RSP00645 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1439. Group TF: GmDof4; GmDosf16 /AC: RSP01619//OS: Glycine max /GENE: Synthetic OLIGO/RE: E2 /TF: GmDof4; GmDosf16 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: TOM22-V |LOCUS: AT5G43970 |PROD: expressed protein |17710034..17710630 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.33 C - 0.20 1 tagtattgcc tccggagaca tcttttgcat attgcattgg ttattaagtt 51 ctgattctga tctagagccc ttgatataag tattatgcag tgattataat 101 tgggctttta tggcCCAATc attgagctga ttaatatatt ggactttaat 151 ggcccaaatc atggtaaaca aaactcatcc tactgataga agaaaccctc 201 GTTACTATCC TCTCACTCTC CGAAGCGATT CAGAAAGTTT TAACCCAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.003 +strand -97 : -88 GCTTTTATGG AC RSP00255 Mean Expected Number 0.001 +strand -28 : -20 ACTCATCCT AC RSP00961 Mean Expected Number 0.006 -strand -172 : -179 TGCAAAAG AC RSP01150 Mean Expected Number 0.000 -strand -100 : -110 AATTATAATCA AC RSP01642 Mean Expected Number 0.004 -strand -178 : -187 AgATGTCTCC Totally 5 motifs of 5 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 248. Group RE: ACTCAT motif /AC: RSP00255//OS: Arabidopsis thaliana /GENE: ProDH/RE: ACTCAT motif /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G44000 |PROD: the same as GENE |complement(17719357..17721178) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.35 C - 0.21 1 cattgattta taaattagtg aaacactcta tatactctat atccactcta 51 ttttataatt ttataattaa aatgtttgga aacattttaa ttagtgaaac 101 acttatatcc acttgggcct agaataaacg tagttgggcc tgctttcaaa 151 tggatacaaa acatatcgtt ttacgtcttt cgtctctctt ctctcgccga 201 AGGAAAAAAA TTCAGCCATG GCCAATTGCT TCGCGCCACA ATTAACCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.004 -strand -84 : -93 cCCAAGTGGA AC RSP00933 Mean Expected Number 0.005 +strand -149 : -137 TTTATAATTTTaT AC RSP01013 Mean Expected Number 0.003 +strand -54 : -45 CAAATGGAtA AC RSP01720 Mean Expected Number 0.001 -strand -21 : -32 AAAGACGTAAAa Totally 4 motifs of 4 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1528. Group TF: STF1/HY5 /AC: RSP01720//OS: Arabidopsis thaliana /GENE: IAA3/SHY2 (At1g04240)/RE: C/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: POP1 |LOCUS: AT5G44110 |PROD: ABC transporter family protein |complement(17771291..17772969) |SUPPORT | 6 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.29 C - 0.18 1 aaaactgacg taacgccgtc gttttaattc tttgtcggtg agcaacatag 51 agtgacgtgg cagctatctg ctggttaaac gtattagcgg aagactaaag 101 tatgtaaatc taatggacag aaaagtacat aacgtggccg aaatctaatg 151 gctaataagg tctttgttta aaacggaacg tatttaaagg ccaacagatt 201 AAGCAGAGGA GTTATACTTT ACTACTTACT AATCTCTCCC TCTCTCTATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.005 +strand -195 : -188 TGACGTAA AC RSP00113 Mean Expected Number 0.000 +strand -148 : -140 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -148 : -141 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -141 : -148 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -140 : -149 GCCACGTCAc AC RSP01034 Mean Expected Number 0.006 +strand -146 : -140 ACGTGGC AC RSP01034 Mean Expected Number 0.006 +strand -69 : -63 ACGTGGC AC RSP01280 Mean Expected Number 0.000 +strand -150 : -140 aGTGACGTGGC Totally 8 motifs of 7 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G44250 |PROD: the same as GENE |complement(17840972..17842943) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +96 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.36 C - 0.19 1 ggtttttcga tgaacacatc atcatgtaac tctaaatagt aacacaaata 51 ttcatgccga gcagttaata acaattatgt agttttaatt tcctaattaa 101 aatcttaata aatataataa ttattaatta agacaaaaga taacgaacga 151 tagtgatctg ttctatcttc ttcctctacg tctctctgct cgaagcttgt 201 GCCCTTTCAT TATTATGTCA ACAACCCTCC TCTATTGAAG ATTTCTTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.004 +strand -26 : -17 TCtACGTCTC AC RSP00068 Mean Expected Number 0.005 -strand -17 : -26 GAgACGTAGA AC RSP00233 Mean Expected Number 0.007 +strand -26 : -17 TCTACGTCtC AC RSP00243 Mean Expected Number 0.001 +strand -2 : +6 GTGCCCTT AC RSP00501 Mean Expected Number 0.001 +strand -143 : -137 CGAGCAG AC RSP00501 Mean Expected Number 0.003 -strand -9 : -15 CGAGCAG AC RSP00915 Mean Expected Number 0.005 -strand -178 : -187 GATGATGTGT AC RSP00997 Mean Expected Number 0.004 -strand -178 : -187 GATGATGTGT Totally 8 motifs of 7 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 236. Group TF: MNF1; MNB1a; MNB1b /AC: RSP00243//OS: Zea mays /GENE: PEPC/RE: MNF1 BS core /TF: MNF1; MNB1a; MNB1b 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: dormancy/auxin associated family protein |LOCUS: AT5G44300 |PROD: the same as GENE |complement(17862398..17863421) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.18 T - 0.24 C - 0.19 1 tgattaagac acaagaaaac ccaaaaaaca aatatgtctg tattttgaaa 51 gtcttgaaaa cttcaaattt atctcctaag gacacggaca aattgttgca 101 agagaccagc tccACAATct cctaaaccgg aacaactcaa atcaaactaa 151 accgatcatg tcaggtattt ataggagaga catgaaacga agatctttct 201 AAGCAAAAGA AAAAAATGGG TGTACTTGAA AACCTTTGGG ACGACGTTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00509 Mean Expected Number 0.001 -strand -28 : -39 TATAAATACCtG AC RSP01093 Mean Expected Number 0.005 +strand -3 : +8 TCTAAGCAAAa AC RSP01202 Mean Expected Number 0.001 -strand +39 : +32 CCAAAGGT AC RSP01296 Mean Expected Number 0.002 -strand -27 : -35 CTATAAATA AC RSP01301 Mean Expected Number 0.000 -strand -27 : -36 CTATAAATAC AC RSP01462 Mean Expected Number 0.000 -strand -38 : -48 TGACATGATCG AC RSP01467 Mean Expected Number 0.000 -strand -38 : -48 TGACATGATCG Totally 7 motifs of 7 different REs have been found Description of REs found 485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302 1332. Group RE: CPPE-2 /AC: RSP01462//OS: Glycine max /GENE: BiP9/RE: CPPE-2 /TF: unknown 1337. Group RE: CPPE-2 /AC: RSP01467//OS: Glycine max /GENE: BiP6/RE: CPPE-2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G44500 |PROD: the same as GENE |17944680..17946653 |SUPPORT | 2 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +52 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.25 C - 0.23 1 ataataataa atttacaaaa ctatactata taaattaatt tgacaaatgg 51 tgaaaaaaaa aaaaaggcaa tacacctatg ttatgtatag cctaacccat 101 tctaactagg cccaaATTGA aacaaagccc aacaagaagg aaagtgtcat 151 tcattctttc tcgaataaaa ccgtagaaat tccccctctt ccccaattcc 201 ACTGCCAAAA CTCTTCGCTT AATTCTCCGG CGTATACAAG TCGCCGGCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.001 -strand -160 : -173 AAATTAaTTTATAT AC RSP00940 Mean Expected Number 0.009 -strand -23 : -32 TTCTACGGTt AC RSP01499 Mean Expected Number 0.003 +strand -21 : -12 TTCCCCcTCT Totally 3 motifs of 3 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribose 5-phosphate isomerase-related |LOCUS: AT5G44520 |PROD: the same as GENE |complement(17951514..17953751) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.34 C - 0.14 1 tttaaaaatt caaaaataat atttggaact tagtaattta tgtgttgctt 51 taaaattata aaattatatg aaaataaata tttaatatat attttatcat 101 tttttttgga acaaaatata tataatttag cctattttcg taattctcca 151 aaaagaaaat ggtcgtgtaa tatcgtcgta gttcgtactc cacatgcacc 201 ACAAAACTGA TCGGGAGATA AGAGCGGTAA AAACCACCGA GTCACGACTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.004 +strand -8 : -2 CATGCAC AC RSP00129 Mean Expected Number 0.009 -strand -34 : -39 CACGAC AC RSP00933 Mean Expected Number 0.008 +strand -108 : -96 TTTATcATTTTTT AC RSP01000 Mean Expected Number 0.001 +strand -7 : +3 ATGCaCCACA Totally 4 motifs of 4 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G44650 |PROD: the same as GENE |18030376..18032630 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +247 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.14 T - 0.35 C - 0.08 1 attatattaa aataattaaa attattagtt ttttttgaga tattaaaatc 51 atgaatgcaa aatataaaag ttatattatt tattattttt gatttcataa 101 aatgagtatg tattctttta gagataaaag aaaaaaagaa aaaaATTGGc 151 aagttcgatg caaaacccct taaatatggg gaatcctaaa tatggaaaac 201 ACAATAGTAA TTTTATAGTA TTATCCAAGT AGCAGTTGTT CGGAGGCTAT 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: molybdenum cofactor sulfurase family protein |LOCUS: AT5G44720 |PROD: the same as GENE |18060225..18062704 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.35 C - 0.16 1 tcacttgtta cttgttctta ttgagaattg attttttaca gggatcctaa 51 ttaccacgga tttacttgaa tgagtttagt ccatcaaaaa gttgaaaaag 101 aaccaaatat taaaagatgg ttggtgtaac ctgtctgctt atataatcca 151 cgtgtgaaaa atgcataaaa ctcaaacgac aacattttga aaacgatggc 201 AAATTCTTGA ATGATTCTTC TTTTTATGTT CCCTTTTTAC TAAAGCTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.002 +strand -54 : -45 TCCACGTGTg AC RSP00524 Mean Expected Number 0.006 -strand -46 : -52 ACACGTG AC RSP00530 Mean Expected Number 0.004 -strand -100 : -111 TCTTTTTcAACT AC RSP01255 Mean Expected Number 0.001 -strand -46 : -53 ACACGTGG AC RSP01454 Mean Expected Number 0.006 -strand -76 : -82 ACCAACC AC RSP01734 Mean Expected Number 0.006 +strand -54 : -48 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 506. Group RE: AT-rich F /AC: RSP00530//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: AT-rich F /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G44785 |PROD: the same as GENE |complement(18087918..18090356) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.35 C - 0.20 1 gctaagtttg atatactaca aaatcaacta aaatttcgtc ataaaaaaaa 51 aatcattgtg gtcgtatctt taggttaact gtgtataagt gaataattaa 101 ggataaacgt cagattctag gccttttgga ataacggcCC AATaattatt 151 atttgggcct gttaatcact tgtttcccct taaacctttg gcgcccaaac 201 AAATTAGGGC TTTATCTTAT CTTCGCGATT CTCTCATTTC CTCCCTCTAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00203 Mean Expected Number 0.005 +strand -97 : -88 TAaACGTCAG AC RSP00227 Mean Expected Number 0.005 -strand +23 : +15 AAGATAAGA AC RSP00870 Mean Expected Number 0.010 +strand -119 : -110 TGTAtAAGTG AC RSP01053 Mean Expected Number 0.004 -strand +21 : +13 GATAAGATA AC RSP01202 Mean Expected Number 0.003 -strand -10 : -17 CCAAAGGT AC RSP01604 Mean Expected Number 0.004 +strand -123 : -116 ACTGTGTA Totally 6 motifs of 6 different REs have been found Description of REs found 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G44820 |PROD: the same as GENE |complement(18112940..18114812) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +27 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.30 C - 0.17 1 tgcacgattc gaccacttgt attaattttt ggaatcagtc tttttaatta 51 aaaaaatcat aaacaaaata ataataaaac attgcacatt tttaaaaaat 101 aaattaatat tgcacattgc tgttacaaga ataCCAATga tgacttttgc 151 cttgctcatg tacgttatta taagaaccga caaaaaacga agactaaaga 201 GAAGAAAAAA CACTTCCAAA CAAAATAATG AGTTCTTCGT CTTCCTCATC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00522 Mean Expected Number 0.005 +strand -188 : -182 CCACTTG Totally 1 motifs of 1 different REs have been found Description of REs found 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G44860 |PROD: the same as GENE |complement(18127685..18129014) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.41 C - 0.17 1 gaagaaaagt gagttttagt taactgtctc aaattttctt agcaaataag 51 aaggtaatta accatgattt aattagtgaa ctatatttct ttttaaaaaa 101 aaaaacaaaa tctttgaccc tgtctctttt ctttctcgtc gtgtctttga 151 tgctaaattt agaattttta gttcattttc caacaaactt ttttaaccat 201 GAAGTGACCG TCTTCCTTGT CTTTTTTCTC TCCCTGTTGA GATCTCTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00858 Mean Expected Number 0.007 +strand -148 : -141 GGTAATTA Totally 1 motifs of 1 different REs have been found Description of REs found 794. Group TF: DF1 /AC: RSP00858//OS: Pisum sativum /GENE: pra2/RE: GT2 /TF: DF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DSS1/SEM1 family protein |LOCUS: AT5G45010 |PROD: the same as GENE |complement(18184471..18185601) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.23 T - 0.33 C - 0.16 1 agcgtgacaa cttttggacc ggtttgtatg tcatggattt ggtcaagacg 51 aatgcgacta ttggaccggt ctaaaacagc ttcttttaaa cctcaatcgg 101 atatttttaa tATTGGgtcg gattcggtat gaatcatata agattcgggt 151 cggattcggt atgaatcata taagattcgg gtcggttatt ggaaattggt 201 AATTTTCCCC TTCTTCAAGT TAGACCCAAA ACGAAAAAAA GGTTCGTTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00593 Mean Expected Number 0.002 -strand -23 : -31 GAATCTTAT AC RSP00593 Mean Expected Number 0.002 -strand -55 : -63 GAATCTTAT AC RSP01103 Mean Expected Number 0.002 +strand -113 : -106 AAACCTCA AC RSP01499 Mean Expected Number 0.003 +strand +5 : +14 TTCCCCtTCT AC RSP01757 Mean Expected Number 0.002 +strand -159 : -152 GTCAAGAC Totally 5 motifs of 4 different REs have been found Description of REs found 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RHA1 |LOCUS: AT5G45130 |PROD: |18261493..18263670 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +229 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.42 C - 0.14 1 atgaaatact aacgaaacta tacacaatta tcgactttat tattaagaga 51 catcgtctac aatatatgaa ggtcagcgtg taacatattt ttgtttttgg 101 ggcgttttta gtattttaga caaatatagg gatttatcgt aatttcgata 151 atcttgtggt ttttttagtt ataagtctcc tcttgtcata ttcacgagcc 201 GTATAAAAAA GTTGTTTCTT TCTTCTCTGT TTTTTTGCTT TCGTCTTCAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00879 Mean Expected Number 0.010 -strand +43 : +37 CGAAAGC AC RSP01640 Mean Expected Number 0.002 -strand -146 : -155 CgATGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pectinacetylesterase, putative |LOCUS: AT5G45280 |PROD: the same as GENE |18362822..18366922 |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +1267 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.35 C - 0.15 1 ttactacgaa ggtagttttc ttgagagtct ttaacgttga attctcgtga 51 cctggcaaat acatgaaagt aacaataaaa cttttatatt tatttttatt 101 aaatgaagca aaaaagaaaa agaaaaaaaa aaggttttct ttcgacgtgt 151 ggtattctgt atccatctat ataacagaga ggacatcaat ggctttcttt 201 GAACTTGTAA ACCTTACTCT CGAAGAGTCC TCTGTTACTC ATTTTTACAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00110 Mean Expected Number 0.001 -strand -50 : -57 CACACGTC AC RSP00140 Mean Expected Number 0.003 +strand -113 : -101 AtTTATTTTTATT AC RSP01056 Mean Expected Number 0.005 -strand -125 : -135 AtTGTTACTTT Totally 3 motifs of 3 different REs have been found Description of REs found 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: F-box family protein |LOCUS: AT5G45360 |PROD: the same as GENE |complement(18401778..18404010) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.33 C - 0.22 1 tagttcgaac gtcgttaact cgtaataata attcagaaaa atgttgttat 51 ttaatcacgt ttagaaagct aatttgtatt aatgacgcta acgacaagga 101 ggagggttag tgttatgggc ttatttatta atatatggcc catttaggtt 151 attagcccat ttatcaaaat tattcggccc gaggtcgtct ccaatctcac 201 GCCACCGATT CCAAACGCCA ACCCTCTCGA GTCTTGTCTC TCTCCAATCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.004 -strand -103 : -112 CTTGTCGTtA AC RSP00584 Mean Expected Number 0.000 +strand +20 : +32 AACCCTCTCGAGT AC RSP00865 Mean Expected Number 0.001 -strand +45 : +37 GGAGAGAGA AC RSP01641 Mean Expected Number 0.008 +strand +32 : +41 TCTTGTCTCT Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 560. Group RE: TSS MM /AC: RSP00584//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: TSS MM /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CLPP4 |LOCUS: AT5G45390 |PROD: |18413530..18415343 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.19 T - 0.35 C - 0.24 1 atttaaatgg tttggtttgg tttggggtgc tttcgtcgga ttcaattcgg 51 cctggttcgc atgccaaata ggccagggcc caataaaccg taacttggat 101 taggtagaCC AATtaagaat aataacccga cccgtttcaa ttaagggtcg 151 gatcactcac tcccgtgttt cttctttctt cttccaaagg tgtttgtttt 201 ATCAAATCCA CATTTCCCCA AATTTCTTTC TTCTTCTTCG CTTCAGCCAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.005 -strand -5 : -12 CAAACACC AC RSP00860 Mean Expected Number 0.009 -strand +31 : +23 AGAAAGAAA AC RSP01003 Mean Expected Number 0.005 +strand -64 : -55 tCAATTAAGG AC RSP01004 Mean Expected Number 0.007 +strand -200 : -191 AtTTAAATGG AC RSP01202 Mean Expected Number 0.002 +strand -17 : -10 CCAAAGGT Totally 5 motifs of 5 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G45410 |PROD: the same as GENE |complement(18419135..18421025) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +516 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.25 C - 0.25 1 acgataaacg gcatgcgatc cattattatc caacaccaaa tagtcttcgt 51 ggttcagttt ctccaccgaa cacaaccacg tgctacatta cagagtcaac 101 taaaccggaa atcaccggtt ttataaaaaa gagtttcacg ggtttaccga 151 ctaaaccggt aactctcaat agaaactcaa agcacgtctg tgttcaccac 201 ACGTTTTATC AAAAGTCTAA GCTACTCTGC AATTCATTTG CCGGCGAAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00633 Mean Expected Number 0.001 -strand -167 : -179 GTTGGaTAATAAT AC RSP00680 Mean Expected Number 0.010 +strand -113 : -104 TtACAGAGTC AC RSP01621 Mean Expected Number 0.008 -strand +19 : +10 TAgACTTTTG Totally 3 motifs of 3 different REs have been found Description of REs found 609. Group TF: S2F /AC: RSP00633//OS: Spinacia oleracea /GENE: RPL21/RE: CV /TF: S2F 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G45590 |PROD: the same as GENE |complement(18501734..18503505) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +51 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.29 C - 0.20 1 ccttcgccta caaaaaaaaa acaaattagt ttggtatttt tttggctttt 51 ttcccaaaga cattttacca ttatcaaagt aaaagagaat gatgacaaga 101 aaaaaaaaga gtaaaaaaga atagagttat cctaataacc aaacactcaa 151 aatcatttcc caaaaacccc aaagctttgt cacacacact tcttctcttt 201 TATAAAATTC GCATTTCAAT CAGAAAATTG TTCTTCCCCT TGGAGACGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.004 -strand -102 : -111 CTTGTCaTCA AC RSP00445 Mean Expected Number 0.008 -strand +3 : -7 AtAAAAGAGA AC RSP00654 Mean Expected Number 0.007 +strand -18 : -9 CACaCACTTC AC RSP01762 Mean Expected Number 0.010 -strand +43 : +38 CCAAGG Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G45760 |PROD: the same as GENE |18578338..18580422 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.23 T - 0.35 C - 0.17 1 atttcgtttc accgtatcgg ttcattttgg ttaagtggta ctaaaatcga 51 tttctgttag gttggaattt tgttgtttcg atttttttgg tacaaaaccg 101 aaggattacc aaaatatccg gtttagtttt ggtttgtttc ggttagcctt 151 ttttagctca atttagagct tgaaactgag caatcgccgg agaaactctc 201 ACTCACAGTT ATGGCTACGG CAATGGAAGA GCCAAGGAAG CTGAGAGGCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01033 Mean Expected Number 0.010 +strand -54 : -45 CCTTTTTTAG AC RSP01205 Mean Expected Number 0.007 +strand -54 : -45 CCTTTTTTAG Totally 2 motifs of 2 different REs have been found Description of REs found 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GDSL-motif lipase/hydrolase family protein |LOCUS: AT5G45960 |PROD: the same as GENE |complement(18654250..18657585) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.37 C - 0.19 1 atttggaaag cactaattct ttctagcata aaaaatctaa ttccattttc 51 tttgtcgagt tttttttaat cactattact tcagcttttt ttaatgaact 101 tttgattgag ttcgaTCAAT taaactgaaa tagacaaccc ctattaatta 151 tgactgtata tcttagtata taatgtgcta atacacttga aggtaccaac 201 CAGACTACTC ATTTGTCTCC ACTCCAAACT TTCACAACAA TGAGAAGTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.007 -strand +28 : +21 TTTGGAGT AC RSP00888 Mean Expected Number 0.008 +strand -170 : -162 AAAAATCTA AC RSP01692 Mean Expected Number 0.005 +strand -90 : -83 TTCGATCA Totally 3 motifs of 3 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G46020 |PROD: the same as GENE |complement(18680104..18682054) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +198 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.27 C - 0.21 1 gacgacgccg tttttttgtt cttttacgat aaagagtacg cttatcgaaa 51 cacgtcgtcg tatttgacca tttacagcaa aacgagttag taaccgtttg 101 atctataagt tgagatgatt ttatagtaca ccgcgaaaca gaggaataaa 151 aataaaaatc cacactcaaa gaaagaatcc ccaaatccac aggtggcttt 201 AGGGTTTTCG TCTCTTTCAC TCGTAACCGG AAGAGAGGAC AAGATCCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 +strand -2 : +7 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand +7 : -2 AAACCCTAA AC RSP01303 Mean Expected Number 0.002 -strand +8 : -2 aAAACCCTAA AC RSP01651 Mean Expected Number 0.002 -strand -115 : -123 CTCGTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G46030 |PROD: the same as GENE |18687356..18688566 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +402 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.30 C - 0.19 1 gggtaaatag ttttctaaaa gtgtcttata atgtaataat ctcaataaac 51 aattcaaagc tgtataccat tcaagcccat tattcaaaat tttgtttgac 101 taatactatT CAATcgggtc tatgggcctc agaaaataat aaatgggcct 151 taaatacttg gaaacaatgg atagatcgat ctcaacttta aaatgcgtcc 201 AAAAATATAA ACAAACAAAC ATCTCTCGCC GTCAGGTTAC ATCTATCGCC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: APE2 |LOCUS: AT5G46110 |PROD: phosphate/triose-phosphate translocator, putative |18714462..18717883 |SUPPORT | 12 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +371 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.10 T - 0.28 C - 0.15 1 ctagaataac gtatatgact atgagcatga aactgcaagt caaatgctga 51 cagacaacca taaacaaaag aaattaaata gagatacctt taaaataagt 101 aaaatttcat ttataaaaaa tctactttct tgtgaatctg tcacgttcaa 151 taatttgaag accactcaac atacaaggta aataatgaaa aataaaatct 201 ACCAAAATTT CAATTATTAT TATCTTCCAA AAAAACAAAA TTATACAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01236 Mean Expected Number 0.000 -strand -177 : -186 TCATAGTCAT Totally 1 motifs of 1 different REs have been found Description of REs found 1141. Group RE: 10 bp Z-BAC- /AC: RSP01236//OS: Phaseolus vulgaris /GENE: BAC/RE: 10 bp Z-BAC- /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KH domain-containing protein |LOCUS: AT5G46190 |PROD: the same as GENE |complement(18740346..18743427) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +366 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.35 C - 0.21 1 taagccttaa aacttaaaag tagattttag gtttaacaat attgtttctg 51 agaaaatggg ctaaacacca aatctaaaca aaagttaggg actttcttca 101 tattatatta ttgttaacta tatataaccg aaagagaTCA ATcaaagtaa 151 aaatctcttt taacacatcg ccgtcatctc tctctctctc tctactctgc 201 ATCAGACAAT CACAAATCTT TCTCTTTCTC TTTCTCTCTC TAACACAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.004 -strand +35 : +27 AGAAAGAGA AC RSP00861 Mean Expected Number 0.004 -strand +29 : +21 AGAAAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +41 : +33 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -8 : -16 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -10 : -18 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -12 : -20 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -14 : -22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand -16 : -24 AGAGAGAGA AC RSP01017 Mean Expected Number 0.009 -strand -152 : -159 AGAAACAA AC RSP01195 Mean Expected Number 0.002 +strand -163 : -151 AATATTgTTTCTG AC RSP01283 Mean Expected Number 0.000 -strand -9 : -25 GAGAGAGAGAGAGAGAt Totally 11 motifs of 5 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1106. Group RE: Region II /AC: RSP01195//OS: Zea mays /GENE: cab-ml/RE: Region II /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KAS I |LOCUS: AT5G46290 |PROD: similar to 3-ketoacyl-ACP synthase |complement(18791313..18793962) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.29 C - 0.19 1 ttgttgagtt acgaattgga gaatggctca aagcatccgt acctatttta 51 agtagaccaa atagtagaat aacataaact acaaggctag aactaaaaca 101 cttgtaaaat taagggactt agagaaaaat tacagtccaa aaatttcctc 151 gaataattcg ctgttttttt tataatatag tcttgctcct gaaatctgac 201 GAACATAAGC TCTTTTCGCA AAACACACAT CACACACCAT TTTCACAACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01210 Mean Expected Number 0.008 +strand -158 : -149 CTATTTTAAG AC RSP01233 Mean Expected Number 0.009 -strand -14 : -20 AGCAAGA Totally 2 motifs of 2 different REs have been found Description of REs found 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc-binding family protein |LOCUS: AT5G46710 |PROD: the same as GENE |complement(18969564..18971919) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +208 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.22 T - 0.28 C - 0.13 1 acgaaattga ttaatatttt tggtggaaaa ataatagtga aagagagaga 51 gataagacca aagaaggaca gaaagatatt tttaaaatac caaaaaaaag 101 gaaataatca aataaaatta gaaaattcca agagggttcc ttgaacccaa 151 cgcttcttct taggctcggg gctggttcgg gattaggttc ggaaatatta 201 TACATTGTCG ACATTGGTAG GATAAGTAGG ACTCTTTCTC ATTGCTTTTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.004 +strand -159 : -151 AGAGAGAGA AC RSP00864 Mean Expected Number 0.004 +strand -157 : -149 AGAGAGAGA AC RSP01033 Mean Expected Number 0.009 -strand -134 : -143 CCTTCTTTGG Totally 3 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT5G46840 |PROD: the same as GENE |19022828..19024993 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +50 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.31 C - 0.24 1 ctgatgagat ttacaatgaa tcaattctga aaccaaaaag tgattcagcc 51 caatgatgtg tgttttaaag cccaatgact aatgggctta tttaacccaa 101 ccaaataact aatgggctga attcggatca tttaaacccg acccggtatc 151 atctctatgg cgctctctgg ttaaaacata caaactttta gggtttcttc 201 AATCTCTCTC TCCCTCTTTC TTCCTCTTCT CTCATTGAAA TCGAACGAGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.008 +strand -14 : -8 TTTAGGG AC RSP00279 Mean Expected Number 0.001 +strand -13 : -5 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -5 : -13 AAACCCTAA AC RSP00864 Mean Expected Number 0.002 -strand +11 : +3 AGAGAGAGA AC RSP00865 Mean Expected Number 0.002 -strand +13 : +5 GGAGAGAGA AC RSP01303 Mean Expected Number 0.002 -strand -4 : -13 gAAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: VAM3 |LOCUS: AT5G46860 |PROD: syntaxin 22 (SYP22) (VAM3) |complement(19029248..19031194) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +172 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.29 C - 0.17 1 taaaaattat tgtttattaa ctaaaactga atcaaatcaa aaataaaaac 51 aaactgaccc aaaccaaaat ctcaataaac caaaccaatt gtttaatttg 101 gcaagaaaaa cagaaacgag gagaggttac taaatatata gaaataaaag 151 gatcaaaaag gaaacaactt tatctcagct ttttcttctc aattaaaatc 201 AGTTTGGGAT TTTTTCGAAA ACGCTTTTCA ATCTTCGTCT ATCTGTCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.007 +strand -116 : -106 CcAATTGTTTA AC RSP00941 Mean Expected Number 0.009 +strand +26 : +33 TTTCAATC AC RSP01594 Mean Expected Number 0.009 -strand +33 : +26 GATTGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G46950 |PROD: the same as GENE |complement(19076746..19077348) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +32 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.38 C - 0.13 1 ttcaaacaaa taaattatga atttaggatt atcttaccag tattaagtaa 51 atgtagaata tatctcaata ttgattgaaa tctatttttt gaattgggat 101 cttttccaaa tttaagagtc ttaccataaa attattttct ctggtttact 151 ataaattaaa gggaaacaca gagtgacaat atttttcatc aatcaattct 201 AACTTACTTC TTCTCAAAGT AAAAACAAAA AAATGAAGTT CTTGGTTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00941 Mean Expected Number 0.009 -strand -121 : -128 TTTCAATC AC RSP01594 Mean Expected Number 0.009 +strand -128 : -121 GATTGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G47090 |PROD: the same as GENE |19144486..19145996 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.27 C - 0.18 1 taatctttca gtttttcttg ctgtaatttg ttttaaaaat gaccgatttg 51 tcttttaacc aattcatcat ccaaaacatc aattagtggt ttaaatggcc 101 caagaaagcc caacaggtga tgaacaccgg caaagtcttg tcacgtgacc 151 agcacatgaa cgagacgatt tacatctttc tttagtcagt cggtcgagtc 201 CGAGAGAGGA GAACAATGGA AGAGAAGAAG AAGACGATGG AGATGGAAGC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01233 Mean Expected Number 0.009 -strand -179 : -185 AGCAAGA Totally 1 motifs of 1 different REs have been found Description of REs found 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L19 family protein |LOCUS: AT5G47190 |PROD: the same as GENE |complement(19181475..19183334) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.24 T - 0.33 C - 0.16 1 gtaacagaaa ctctttattt aaaccatttt tggttctaca ttagtgtact 51 tggacaagcc ttggttcgtg gtggtagact ggtagaacca gctttggtaa 101 tgggtttctt gttataTCAA Ttgaatatgg gcctaaatgt ctaggcccat 151 aaaattagta aatggcccat aaattgaaat acacggagcg gataagcgat 201 AAGGCTCTTC TTTACTCTGG TTTCGAGTTT GGGTTGTGCA AACATGGCGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00011 Mean Expected Number 0.004 -strand -4 : -13 GCTTATCCGC AC RSP00355 Mean Expected Number 0.005 +strand -199 : -192 TAACAGAA AC RSP01033 Mean Expected Number 0.007 +strand -177 : -168 CCATTTTTGG Totally 3 motifs of 3 different REs have been found Description of REs found 11. Group RE: C2b-BS /AC: RSP00011//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2b-BS /TF: unknown 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: Ras-related GTP-binding protein, putative |LOCUS: AT5G47200 |PROD: the same as GENE |19184132..19186160 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +124 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.25 C - 0.21 1 tcaaaaaaga aaagaacaaa aatcgacaaa gaagaagaaa aaagattgat 51 tgattctttt gtcctccacg catctctctg agttggctcg gccacgtcag 101 cattcaaaca tcaaaaccaa aacgcattta aatgtcgaaa agagtgggtc 151 cctttttttc ttttttctta accgtgtcat tgacaaaaag agcacttaat 201 AAGCCAAAGC CACATAGAAG AAAAAAAAAA GAACATTCAC GTCTCTCTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 +strand +36 : +45 TtCACGTCTC AC RSP00113 Mean Expected Number 0.000 -strand -102 : -110 TGACGTGGC AC RSP00155 Mean Expected Number 0.000 +strand -159 : -147 AAGATTGATTGAt AC RSP00208 Mean Expected Number 0.000 +strand -110 : -99 GCCACGTCAGCa AC RSP00214 Mean Expected Number 0.003 -strand -102 : -109 TGACGTGG AC RSP00215 Mean Expected Number 0.003 +strand -109 : -102 CCACGTCA AC RSP00247 Mean Expected Number 0.004 +strand -110 : -101 GCCACGTcAG AC RSP00248 Mean Expected Number 0.002 +strand -110 : -101 GCCACGTCAG AC RSP00445 Mean Expected Number 0.003 -strand -35 : -44 AAAAAAGAaA AC RSP00445 Mean Expected Number 0.003 -strand -43 : -52 AAAAAAGgGA AC RSP00716 Mean Expected Number 0.008 +strand -89 : -81 CAAAACCAA AC RSP00734 Mean Expected Number 0.008 +strand -83 : -76 CAAAACGC AC RSP01034 Mean Expected Number 0.005 -strand -104 : -110 ACGTGGC AC RSP01280 Mean Expected Number 0.000 -strand -100 : -110 GcTGACGTGGC Totally 14 motifs of 13 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 150. Group RE: 13 bp CytRE /AC: RSP00155//OS: Cucumis sativus /GENE: hpr-A/RE: 13 bp CytRE /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nuclear RNA-binding protein, putative |LOCUS: AT5G47210 |PROD: the same as GENE |complement(19186249..19188446) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +207 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.32 C - 0.20 1 ttaatggact aagaacgaat attcttttca ttaatgggct ttaaccaacg 51 agagctgata tttattattg ttaatgggct taaccagttt gtagcccacg 101 gatagataaa gagaggacca gaacacagtt aaatagcacc cgccgcagag 151 aataataact caggaagggt ttatagatta ggtttttaag tcgcacctct 201 CTCTCTCACT GCCGCATCTT TTCTTAGGGT TCTTGTTTCG CTATCTCTTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.009 -strand -17 : -26 AACCTAAtCT AC RSP00296 Mean Expected Number 0.000 +strand -126 : -103 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -103 : -126 TGGGCT-- ** bp --AGCCCA AC RSP00864 Mean Expected Number 0.001 -strand +6 : -3 AGAGAGAGA AC RSP01304 Mean Expected Number 0.003 -strand +33 : +24 aGAACCCTAA Totally 5 motifs of 4 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: MutT/nudix family protein |LOCUS: AT5G47240 |PROD: the same as GENE |19200944..19202871 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +89 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.06 T - 0.41 C - 0.25 1 ttgattgtaa gatattaaaa ctgttcttcg ctttcctttt ctcatttctc 51 acttaaccac tcgatccact ttaaaccaca cattataagt gtgcctcaaa 101 aaaatctaac attactctct caacacatct ctctttcttc tccatttcct 151 tcttctcttt cattctctta tttaagattt aaatctgctc aaatgcttgt 201 AAACAAATTT CAAGTTCTTT AAACGATTTC CTTTTCAAGA AAAATCCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00874 Mean Expected Number 0.002 -strand -125 : -135 GTTTAAAGTGG AC RSP00888 Mean Expected Number 0.005 +strand -101 : -93 AAAAATCTA AC RSP00892 Mean Expected Number 0.002 -strand -183 : -191 TTAATATCT AC RSP01205 Mean Expected Number 0.009 +strand +30 : +39 CCTTTTCAAG Totally 4 motifs of 4 different REs have been found Description of REs found 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: palmitoyl protein thioesterase family protein |LOCUS: AT5G47350 |PROD: the same as GENE |19229916..19231680 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.31 C - 0.24 1 tgcaaaatgc taccaaaaac gttaatgcaa tatctcaact aatcagcaca 51 gtccatttca tactgagaat gtaaaaacca atcagcatcg tccatttttt 101 catctaatta tttgttaact cttaATTGGc cacaacttcc aaccacatga 151 cgctctttct attcccttta tatattccca tctcaaatgt tcttggagac 201 ACAAAATATC ATAAACATAT AAACATAAAC GCCAATCGCA GCTTTTGTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00709 Mean Expected Number 0.010 +strand -96 : -88 TAATTATTT AC RSP00710 Mean Expected Number 0.002 +strand -96 : -84 TAATTATTTgTTA AC RSP01509 Mean Expected Number 0.002 +strand -124 : -116 ACCAATCAG Totally 3 motifs of 3 different REs have been found Description of REs found 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: myb family transcription factor |LOCUS: AT5G47390 |PROD: the same as GENE |19244017..19246085 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +211 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.52 G - 0.10 T - 0.25 C - 0.13 1 agttcaaagt aattcaacat tttttctaaa ataaatcttc taataataga 51 acacgttgga ttgactaatt aagtcaaata tgaaatatgg aaaaggaaaa 101 aaatccacca acgatacacc aaataatttc cgatttttat atatataaat 151 aaacatacta agagcaaaag aaaaacaaac tgaaaataaa aaaaataaat 201 AAATAAAAAA AAAAATCCGG CCAGATAAAT CGAATTTATG TAATAAATCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01046 Mean Expected Number 0.000 -strand -138 : -146 CAATCCAAC AC RSP01128 Mean Expected Number 0.007 -strand -19 : -38 CAGT-- ** bp --TGCT Totally 2 motifs of 2 different REs have been found Description of REs found 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G47455 |PROD: the same as GENE |19267948..19269718 |SUPPORT | 4 exon(s) |Alternative mRNAs: 6 | -200:+51 from mRNA start|,5"-UTR: +84 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.31 C - 0.24 1 tttcacccac ggacccgtcc accctatcat tcttgtccct cgtgaaggtt 51 tgtgggtgtt attcttcgtt atcaagcgag tttagatggc gtaacttttt 101 cgttaatggg cctaaagccc ataatgatct gaaagATTGC taaacccaaa 151 aaagaagaaa aaccagatat ttattttccg gcttcctcat catctttcct 201 CCGTCCGTTC TAAAACCCTA TAAAAACTCT GTGGAAGAAG AAGATCGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00857 Mean Expected Number 0.004 -strand -112 : -121 CCATCTaAAC AC RSP00915 Mean Expected Number 0.006 -strand -7 : -16 GATGATGaGG AC RSP01167 Mean Expected Number 0.002 -strand -28 : -36 TAAATATCT AC RSP01209 Mean Expected Number 0.005 -strand -47 : -56 CTTTTTTGGG AC RSP01641 Mean Expected Number 0.008 +strand -170 : -161 TCTTGTCcCT Totally 5 motifs of 5 different REs have been found Description of REs found 793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cysteine protease inhibitor, putative / cystatin |LOCUS: AT5G47550 |PROD: the same as GENE |complement(19303676..19304221) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.31 C - 0.16 1 ccaataaatt agtataaatt ttgaaataca aagcaaaaaa gtttttcata 51 aaagttcatt aaaccttttg cctaaattat ggcatgtgtt attaagatta 101 gaaataaata ttctgctaga aatctagaat tctgccacac gtcatgccac 151 gtggcggacc tttaatgtat ttaaaagccc ttaaactcaa tgccataatc 201 AATTTTGAGG AAACAACAGT TACAAAGCAA AATGACTAGT AAGGTCGTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -131 : -137 CAAAAGG AC RSP00063 Mean Expected Number 0.000 +strand -55 : -46 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.000 -strand -46 : -55 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.000 +strand -55 : -46 GCCACGTGGC AC RSP00073 Mean Expected Number 0.000 -strand -46 : -55 GCCACGTGGC AC RSP00110 Mean Expected Number 0.001 +strand -65 : -58 CACACGTC AC RSP00153 Mean Expected Number 0.000 +strand -54 : -45 CCACGTGGCg AC RSP00153 Mean Expected Number 0.000 -strand -47 : -56 CCACGTGGCa AC RSP00175 Mean Expected Number 0.000 +strand -53 : -46 CACGTGGC AC RSP00175 Mean Expected Number 0.000 -strand -48 : -55 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -55 : -46 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand -46 : -55 GcCACGTGGC AC RSP00431 Mean Expected Number 0.008 +strand +12 : +23 AACaACAGTTAC AC RSP00682 Mean Expected Number 0.001 +strand -55 : -46 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand -46 : -55 GCCACGTGGc AC RSP00718 Mean Expected Number 0.000 +strand -54 : -47 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -47 : -54 CCACGTGG AC RSP01034 Mean Expected Number 0.002 +strand -52 : -46 ACGTGGC AC RSP01034 Mean Expected Number 0.003 -strand -49 : -55 ACGTGGC AC RSP01258 Mean Expected Number 0.003 -strand -57 : -64 TGACGTGT AC RSP01458 Mean Expected Number 0.005 -strand -174 : -186 ATTTcAAAATTTA Totally 21 motifs of 13 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 411. Group TF: AtMYB77 /AC: RSP00431//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB77 BS /TF: AtMYB77 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G47570 |PROD: the same as GENE |complement(19309839..19311962) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.19 T - 0.43 C - 0.16 1 gttaaaggtt gtagcttttt ctgtttttgt acctttgtgt attcaccaca 51 tgaatctctt tgtatatagt aagaatctga agctttttga cacacttgaa 101 gtgtatgtgt ttgctcattt cgttggtttt aaaattcgtt aatcgaaatt 151 acaatattga cctcttttaa aacgatggcg tttcagggaa tcgtttcagt 201 GACTGCGTCT TTCTTCTCTC TCTATCTGTA ATTTGATTGG ATTTTGGATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G47610 |PROD: the same as GENE |complement(19318414..19319133) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +8 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.26 C - 0.28 1 tcatccatcg caataatatc cattaatgtg aagtggacca aaagagagag 51 aagcgagtgt tacagtcctc aaaatagaga cgaaaccatc ctaatccttc 101 aaactctctc acagcttcaa gactccactg gaagcgccac tATTGTccct 151 acactcctct cctttataag gtctcttctc acgaggctct ctctcaaacc 201 ATTAAAAGAT GCGTTTGCTA GTAGCAGAAG CAGCTTCACC ATTGTCCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.001 -strand -149 : -159 TTCTCTCTCtT AC RSP00864 Mean Expected Number 0.000 +strand -158 : -150 AGAGAGAGA AC RSP01205 Mean Expected Number 0.006 +strand -40 : -31 CCTTTATAAG Totally 3 motifs of 3 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: heterogeneous nuclear ribonucleoprotein |LOCUS: AT5G47620 |PROD: the same as GENE |complement(19319496..19321963) |SUPPORT | 5 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +459 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.34 C - 0.14 1 attaataaat taattactta ttacagagaa gaaacggaag tgacgaaaat 51 accctcgtct cttacaagga tagccaaaca ttgccatata aaaacaaaaa 101 cgtaagagaa agtattcttt tttgtgagtg tttttttttc cattttctga 151 aatttgtgct gagcattgct tatttgcttc catccatttt tgttcctttt 201 AATTCGATTT GGATTGCAGA AAAAGAAAAG AAAAGAAAAG ACTAAAAATT 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G47680 |PROD: the same as GENE |complement(19332309..19334748) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +55 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.16 G - 0.15 T - 0.41 C - 0.28 1 gagccccgat tagctgactt acgacggctt tgtgtctctc atcgcttcct 51 cattttctct tattttatat tgatggtccc tcactttctc ttctctttac 101 cctttttccc cattcttaaa gcccatcgtt taacaggccc ctttttaaac 151 atccaggccc attagtgtaa gaataccgac gtcgttttga gtggagtttc 201 AATTTTAGTT TTTTGACCCT TCTTCTTTGC TCTCTCGCTT TGCTTTCTCG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01615 Mean Expected Number 0.000 -strand -94 : -109 AAAAAGGgTAAAGAGA AC RSP01703 Mean Expected Number 0.002 +strand -25 : -16 CCGACGTCGT Totally 2 motifs of 2 different REs have been found Description of REs found 1435. Group TF: GmDof11 /AC: RSP01615//OS: Glycine max /GENE: Synthetic OLIGO/RE: L3 /TF: GmDof11 1512. Group RE: ACGT2/DRE2 /AC: RSP01703//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT2/DRE2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: C2 domain-containing protein |LOCUS: AT5G47710 |PROD: the same as GENE |19346901..19348555 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +795 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.34 C - 0.16 1 aggagtattc gataacttgt agaatatgat ttggataatt ttactgtttt 51 cattagttag ataccactaa attactatta cggtcaaaac gcatgttaag 101 actttgtttg gtcaaataaa attctttata gcaacctcga gagtcgagtc 151 gagaccatgg aatttgtctt taagacaaca tttgtataaa aatgtttttc 201 AACTAAAAAC AAAAAATTCT GATGAGAATG ATAGTCCTCG CCTCCTCTAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.010 -strand -93 : -102 AACAAAGTcT AC RSP00734 Mean Expected Number 0.002 +strand -116 : -109 CAAAACGC AC RSP01162 Mean Expected Number 0.001 -strand -71 : -83 TATAAAGAATTTt AC RSP01209 Mean Expected Number 0.006 +strand -99 : -90 CTTTgTTTGG Totally 4 motifs of 4 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 1074. Group RE: TATA/dyad motif /AC: RSP01162//OS: Glycine max /GENE: Gmhspl7.5-E Heat Shock Promoter/RE: TATA/dyad motif /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: acetyl-CoA C-acyltransferase |LOCUS: AT5G47720 |PROD: the same as GENE |19348832..19352038 |SUPPORT | 14 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +156 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.33 C - 0.26 1 agattctcat aactctctac cttcttaata ataaaacacc tggaagaaat 51 tatctggcaa caaagctatc acgcatacca aggtggtggt ggaaccgaca 101 ctgatATTGG tatcttacgt cacacacaca ctttgttgtt atctctatat 151 ccaccttttt ctttttggct caattatgat ctctctcttt ctcgtttcct 201 CGTAATCTTA ACACAAGCTT GATCGTCCTC ATCTGCCACC AAACCAAAGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.003 +strand -173 : -165 ATAATAAAA AC RSP00112 Mean Expected Number 0.006 -strand -79 : -86 TGACGTAA AC RSP00441 Mean Expected Number 0.001 -strand -64 : -73 AACAAAGTGT AC RSP00861 Mean Expected Number 0.006 -strand -9 : -17 AGAAAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -13 : -21 AGAGAGAGA AC RSP01085 Mean Expected Number 0.001 +strand -107 : -99 ACCGACACT AC RSP01202 Mean Expected Number 0.002 +strand +44 : +51 CCAAAGGT AC RSP01735 Mean Expected Number 0.002 +strand -200 : -192 AGATTCTCA Totally 8 motifs of 8 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1003. Group RE: DRE2 /Group TF: HaDREB2 /AC: RSP01085//OS: Helianthus annuus /GENE: sHSP/RE: DRE2 /TF: HaDREB2 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATPK5 |LOCUS: AT5G47760 |PROD: phosphoglycolate phosphatase, putative |complement(19360113..19362220) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.29 C - 0.23 1 tgtacatttg tcatgtcaag ccaaagaaac agataataaa ctctgttttt 51 ttatagtaca acatgtgctt caacattagt aaaataggcc ttcctaattg 101 ggctcaCCAA Tcacaatgtg gcctctttcg atggaacggt gtcgttttgg 151 acgtgccaat tgtgctttac cagagtgatc aattcccaga agaagaagaa 201 GAAGACACTC CTCCAATGGC GCCTCAGCTT CTCTCCTCCA GTAACTTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -54 : -67 AAACGACACCGTTc AC RSP01071 Mean Expected Number 0.006 -strand -191 : -200 CAAAtGTACA Totally 2 motifs of 2 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G47870 |PROD: the same as GENE |complement(19401600..19403095) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.33 C - 0.24 1 ttataattaa acatttggca tgaaccacac ttgggtttat aaaacaagtt 51 gccttgaata atatcccaaa caaaatcgtt ttgtaataaa aacttgttaa 101 taaattcaaa gaccaaaaaa ggggttggtt tggtttagag cttccaccta 151 cctcacctag tcacctacta ctaaatgtaa cgtcatgtct ctcacaattt 201 ACCACTCTCT TCTCCTGTTT TCCTCTTCCC CAACTCTCAA TTTTGCTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.009 +strand -58 : -49 tCCACCTACC AC RSP00433 Mean Expected Number 0.001 -strand -46 : -57 tGAGGTAGGTGG AC RSP00743 Mean Expected Number 0.002 -strand +7 : -5 GAGTGGTAAATT AC RSP01033 Mean Expected Number 0.003 -strand -79 : -88 CCTTTTTTGG AC RSP01214 Mean Expected Number 0.002 -strand -79 : -88 CCTTTTTTGG AC RSP01454 Mean Expected Number 0.002 -strand -72 : -78 ACCAACC AC RSP01641 Mean Expected Number 0.008 +strand -18 : -9 TCaTGTCTCT Totally 7 motifs of 7 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 413. Group TF: AtMYB84 /AC: RSP00433//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB84 BS /TF: AtMYB84 705. Group RE: box 3 /Group TF: GT-1 /AC: RSP00743//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 3 /TF: GT-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NADH-ubiquinone oxidoreductase B8 subunit |LOCUS: AT5G47890 |PROD: the same as GENE |19405963..19407852 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.37 C - 0.18 1 acaacttatt atattcttta ctgtatgaag acaatttgtg gcagagaaag 51 agaatatata taacctagtt tttttttttt tttttttggt ctaaacctaa 101 caaaaccgac tcatttaatg ggcctaagcc cagtaacttt ccgactcact 151 taatgggccg aagaccaata actttactta attcattttc acatgaacac 201 AAAGTTCTCT CTGGTCTTTG ATTCTTTCGT TGTGTGGCAT CTGAAGAGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.001 +strand -156 : -148 AGAAAGAGA AC RSP00872 Mean Expected Number 0.009 +strand +31 : +40 TGTGTGgCAT AC RSP01000 Mean Expected Number 0.002 -strand +40 : +31 ATGCCaCACA Totally 3 motifs of 3 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GFA2 |LOCUS: AT5G48030 |PROD: DNAJ heat shock protein |complement(19483304..19487128) |SUPPORT | 18 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +149 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.30 T - 0.28 C - 0.16 1 tcaatcgtgt ggaatgacgg cgagttacag agacgatggc aactatactg 51 tagttctgtc ttgcttttaa tgggccattg ggcccattta agggttataa 101 gtcgatggtc cgggtcgggt agatttgggt cggatatgat gggtggggtt 151 gagtaagaaa aggtcaaacc cggtattgtg tggcgaacaa cagaaattgc 201 ATCTTCTACA CAGTTCTGAA GCAACAAAAC AGGGTTTTGG CTAGGGTTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.004 +strand -138 : -129 GCTTTTAATG AC RSP00660 Mean Expected Number 0.009 -strand +10 : +4 TGTAGAA AC RSP01004 Mean Expected Number 0.006 -strand -108 : -117 cCTTAAATGG AC RSP01604 Mean Expected Number 0.002 -strand +14 : +7 ACTGTGTA AC SP017556 Mean Expected Number 0.007 -strand -93 : -100 CCATCGAC Totally 5 motifs of 5 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 632. Group RE: -300 box /AC: RSP00660//OS: Oryza sativa /GENE: Gt3/RE: -300 box /TF: unknown 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 1561. Group TF: C1 /AC: SP017556//OS: Glycine max /GENE: a2/RE: C1BS2 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: polygalacturonase, putative / pectinase, putative |LOCUS: AT5G48140 |PROD: the same as GENE |complement(19535996..19537752) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +114 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.13 T - 0.29 C - 0.16 1 acatatactc cacagatctc acaatcgata tttaggcctc attacgtctg 51 gaaatagtct tttttttttt tcttctaaaa atgaaatcca aaaatatcgt 101 ttaaacaagc tgaaaagtga atggtggaga agaaagtgga actttcaaat 151 ctctctcctc ctagatacta tataatggta gcaaaacata gaaacaaaac 201 ATAAAAAATA AAAAATACTG TAAAATAAAT AGATAGTCAT AACTAGTGTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00653 Mean Expected Number 0.001 +strand -52 : -42 aTCTCTCTCCT AC RSP00865 Mean Expected Number 0.000 -strand -43 : -51 GGAGAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: kelch repeat-containing protein |LOCUS: AT5G48180 |PROD: the same as GENE |complement(19558163..19559649) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.36 C - 0.19 1 ctattacaga aatactcttc aatctgtcac aataaaataa gaattagtat 51 catagatggt aacgtatctc catttatctt ttaatattag acgttactta 101 attcttagta agagaaatcg taatttactt ttgtacttta ATTGTggtcc 151 cttgatacca cattttccta taagtaagta cacgcaacag catcaacaac 201 AATAGCCACA AAACTTTTTT CTTTCATCCT CTAAAAAAAA ATCTTTCTGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00631 Mean Expected Number 0.001 -strand +10 : -3 TGTGGcTATTGTT AC RSP00895 Mean Expected Number 0.000 +strand -57 : -50 GTGGTCCC AC RSP01013 Mean Expected Number 0.008 -strand -125 : -134 tAAATGGAGA Totally 3 motifs of 3 different REs have been found Description of REs found 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 826. Group RE: CLE-core /AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/RE: CLE-core /TF: unknown 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G48480 |PROD: the same as GENE |19661901..19663103 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.28 C - 0.19 1 aatattcgag taaccaattt taattgattt ctttccaacg gtttaataga 51 ggagacatgc gaacgagaca cgagtcctat agggtagtaa atgaaaagtg 101 attagtaggg gcatattcac gtaaataaat caaaaagtaa gggtaaaaat 151 ccacggacgt gagagcaatt gttatatcca tttgaaatcc tcgtcaggtt 201 ACACGAAACG ATTCCGCTTC TCCGCTTCCT TCATAAATAT CTCACTCATC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.004 -strand -167 : -177 AaAGAAATCAA AC RSP00143 Mean Expected Number 0.003 -strand -125 : -134 GACtCGTGTC AC RSP01013 Mean Expected Number 0.004 -strand -17 : -26 CAAATGGAtA AC RSP01167 Mean Expected Number 0.004 +strand +34 : +42 TAAATATCT Totally 4 motifs of 4 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DIR1 |LOCUS: AT5G48485 |PROD: |complement(19663458..19664028) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.35 C - 0.15 1 tacttgggct catatcaggc ccagtatttt gcggatgttt attaatgtgt 51 tttttttcga ttaaaagaga attttatata caaatacaat gtgcaagttg 101 aattttcttt ttccatttgt agtaaaagat ttgtggactg gaaATTGTgt 151 aatcgatact tgataattga taagaatccg aaagcttatg attctatgac 201 AAAAGACCCT CTCCCAAAAG TAAAGTGGAA AAACACATCC CCGTGACTAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.006 +strand -91 : -76 TTTCCATTTgTAGTAA AC RSP00085 Mean Expected Number 0.006 -strand -76 : -91 TTACTAcAAATGGAAA AC RSP00879 Mean Expected Number 0.006 +strand -22 : -16 CGAAAGC AC RSP01013 Mean Expected Number 0.005 -strand -82 : -91 CAAATGGAaA AC RSP01643 Mean Expected Number 0.000 -strand -89 : -101 aAAAAGAAAATTC Totally 5 motifs of 4 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF 1463. Group TF: WRAF1; WRAF2 /AC: RSP01643//OS: Nicotiana tabacum /GENE: tpoxN1/RE: VWRE (np6a-1) /TF: WRAF1; WRAF2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G48500 |PROD: the same as GENE |19670217..19671470 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +244 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.52 G - 0.11 T - 0.22 C - 0.15 1 aatctaaagc caacaagaaa actaatagaa aaggataaaa atttattaaa 51 agatcaaaag taaaaacaga ctacagaaca ttgtataaaa agaaataaaa 101 aacccaaaaa aaacacagta gaattttgtt aaaaagtaaa aaaaaaaaaa 151 aagtagtaga agaagagtag ctaaagccca actttatatt attttcactt 201 ACCCTACACT ATATTTTTGA AAACACCACT CTATGCTCAG AGACACACAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00018 Mean Expected Number 0.007 +strand +13 : +19 ATTTTTG AC RSP00021 Mean Expected Number 0.009 +strand -70 : -59 AAAAAGTAAAAA AC RSP00024 Mean Expected Number 0.007 +strand -14 : -7 TATTATTT AC RSP00092 Mean Expected Number 0.007 -strand -70 : -76 TAACAAA AC RSP00228 Mean Expected Number 0.001 +strand -13 : -2 ATtATTTTCACT AC RSP00940 Mean Expected Number 0.007 -strand -78 : -87 TTCTACtGTG AC RSP01115 Mean Expected Number 0.007 -strand +19 : +13 CAAAAAT AC RSP01601 Mean Expected Number 0.001 +strand -8 : -1 TTTCACTT Totally 8 motifs of 8 different REs have been found Description of REs found 17. Group TF: SEF4 /AC: RSP00018//OS: Glycine max /GENE: beta-conglycinin/RE: SEF4 /TF: SEF4 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 90. Group TF: GAmyb /AC: RSP00092//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TAACAAA box /TF: GAmyb ||Identical REs AC: RSP00393 RSP01051 221. Group TF: GT-1 /AC: RSP00228//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III /TF: GT-1 869. Group TF: GBF /AC: RSP00940//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box II* /TF: GBF 1034. Group RE: CCAAT box-like motif 2 /AC: RSP01115//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 2 /TF: unknown 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FKBP15-2 |LOCUS: AT5G48580 |PROD: |complement(19713155..19714551) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.25 C - 0.19 1 aaactcttac cgaaattttc aactttgcta gtagaaatat aagactctaa 51 cgtagtgaaa tgataaaact cttaaaccga aattttcaac tttgcttgta 101 gagataaaag atgggctttt acaaaaatgc agaaccccac aggcctacct 151 aggcccaata agattacctc tatacactga agaaaaggaa aaaactgaag 201 AGTGAGAACT GAGAAGCGAT TATGGCGAGC AAGATGAGTC TCCGTTACTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.005 -strand -78 : -85 TGTAAAAG AC RSP00354 Mean Expected Number 0.005 +strand -153 : -146 TAACGTAG AC RSP00943 Mean Expected Number 0.004 -strand -138 : -148 TCATTTCACtA AC RSP01191 Mean Expected Number 0.001 +strand -64 : -57 CCACAGGC AC RSP01596 Mean Expected Number 0.004 +strand -148 : -138 TaGTGAAATGA Totally 5 motifs of 5 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 339. Group RE: GARE1 /AC: RSP00354//OS: Oryza sativa /GENE: Rep-1/RE: GARE1 /TF: unknown 872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor 1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cyclin family protein |LOCUS: AT5G48630 |PROD: the same as GENE |complement(19738776..19740460) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.37 C - 0.10 1 aataaaacaa aggtcaaatt gatgaagatg agaaatatga aaaaaaaaaa 51 aagatttcat ataagaattt taaaaacttt ttttggtaaa taattttttt 101 tctatcaaaa aagataaata ctgaattatt actttttttg ttttgtattt 151 ttccttggtg gtctttatgc tctcattatc cacaccataa aaataaaaag 201 CTTGTATTTT TGAAGTTGAA GGATCAAAGA AGCTATGGCT TCCAATTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.009 -strand -64 : -75 AAAAAGTAAtAA AC RSP00093 Mean Expected Number 0.006 +strand -24 : -18 TATCCAC AC RSP00383 Mean Expected Number 0.010 +strand -189 : -183 GGTCAAA AC RSP01032 Mean Expected Number 0.006 -strand -115 : -124 CCAAAAAAAG AC RSP01209 Mean Expected Number 0.005 +strand -124 : -115 CTTTTTTTGG AC RSP01762 Mean Expected Number 0.006 -strand -43 : -48 CCAAGG Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G48655 |PROD: the same as GENE |complement(19748381..19750262) |SUPPORT | 6 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +550 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.29 C - 0.25 1 aaattgttat cgtcattgct aacgtaaaac ccaatgggct atttaaacat 51 ctcaaacggg tccattttag aaattttgct ttttcctagg aaacaacact 101 gtaaaccacg aggaagctac attacgattt cgacacgtgt cACAATcgca 151 ccgaccgcgt cgctttttat tacgaactca aaaaactctc accgtttctc 201 ACCACCTTCG TGTTTCTCTC TCTATTACAG AAAAAAAGAT TCAAAAACCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.002 +strand -69 : -60 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -60 : -69 GACaCGTGTC AC RSP00204 Mean Expected Number 0.001 +strand -69 : -60 GACACGTGtC AC RSP00204 Mean Expected Number 0.002 -strand -60 : -69 GACACGTGtC AC RSP00524 Mean Expected Number 0.009 +strand -68 : -62 ACACGTG AC RSP00524 Mean Expected Number 0.008 -strand -61 : -67 ACACGTG AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP01035 Mean Expected Number 0.008 +strand -66 : -60 ACGTGTC AC RSP01035 Mean Expected Number 0.009 -strand -63 : -69 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -68 : -61 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -61 : -68 ACACGTGT Totally 11 motifs of 6 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L13A (RPL13aD) |LOCUS: AT5G48760 |PROD: the same as GENE |complement(19788364..19789948) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.27 C - 0.24 1 tgggattcac tgctctcccg tcatcaccga ttcggcgatt ccgttctgtt 51 ggtcttgtgt atattgaatt tagtttctct gaacccatgc gattacggat 101 aaggcctaAT TGAttcggcc catcataaaa aaaacaactt attaaagtga 151 cgtaaatacc cccaaaaccc taattcaaaa gaacacgaga aatatcatca 201 GCCGCTCAAG CTCTCACCAC AGTTTGAGAA GCGAAAATGG TGTCAGGATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.004 +strand -53 : -46 TGACGTAA AC RSP00233 Mean Expected Number 0.005 -strand -45 : -54 TtTACGTCAC AC RSP00279 Mean Expected Number 0.003 -strand -28 : -36 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -36 : -28 AAACCCTAA AC RSP00379 Mean Expected Number 0.002 +strand -105 : -96 CGGATAaGGC AC RSP00916 Mean Expected Number 0.004 -strand -176 : -185 GATGACGgGA AC RSP01174 Mean Expected Number 0.001 +strand -189 : -179 gCTCTCCCGTC AC RSP01303 Mean Expected Number 0.006 +strand -37 : -28 aAAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 1085. Group TF: Zmhox1a /AC: RSP01174//OS: Zea mays /GENE: Sh/RE: Zmhox1a BS 1 /TF: Zmhox1a 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATB5-B |LOCUS: AT5G48810 |PROD: cytochrome b5 |complement(19805885..19807512) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +106 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.33 C - 0.16 1 acatacaata ctaagatttt ttataacatt ttttctttgt aacattataa 51 attgttttag tttctacatt aattaaatat ataaaataaa ttcatttaaa 101 taatataaga aaacggaatc tttgattaac tgctgattAT TGGccactga 151 ttaatttccg accccatcaa tagatgagat cagacataca caacttaagt 201 AGACCAAAAA AGCGGTTGGT GTAAGATCCC AAACTCACAG ATTCCCAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00006 Mean Expected Number 0.005 -strand -109 : -122 AAtTTATTTTATAT AC RSP00400 Mean Expected Number 0.006 +strand +13 : +18 CGGTTG AC RSP01454 Mean Expected Number 0.001 -strand +20 : +14 ACCAACC Totally 3 motifs of 3 different REs have been found Description of REs found 6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown 382. Group TF: Myb /AC: RSP00400//OS: Nicotiana tabacum /GENE: RNP2/RE: Myba /TF: Myb 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G48830 |PROD: the same as GENE |complement(19817340..19820241) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +390 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.23 G - 0.16 T - 0.30 C - 0.31 1 tgagagaggc tcgaactctc gacctcagga ttactcagat agctatgaga 51 cctacgcgct agccaactgc gccaccaccc caattgttta ctccctttag 101 aaaatactct atcaagcatt tcaaatcaac actatcgttc tcgtctagtc 151 tctgtcgagg aaagagagat ttttcacgta cgcacaaccc caatccgctt 201 CTTCTGCTCT GCTCTGCTCT GTCTCAATTC GTCCTTGTTG CTCTTCTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00211 Mean Expected Number 0.003 +strand -121 : -111 CcAATTGTTTA AC RSP00385 Mean Expected Number 0.006 +strand -83 : -76 ATTTCAAA AC RSP00629 Mean Expected Number 0.005 -strand -27 : -34 AAAAATCT AC RSP00996 Mean Expected Number 0.005 -strand -71 : -80 GTTGATtTGA AC RSP01599 Mean Expected Number 0.007 +strand -82 : -75 TTTCAAAT Totally 5 motifs of 5 different REs have been found Description of REs found 204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 917. Group TF: Opaque-2 (O2) /AC: RSP00996//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-1 /TF: Opaque-2 (O2) 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pectate lyase family protein |LOCUS: AT5G48900 |PROD: the same as GENE |19842363..19846318 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.35 C - 0.20 1 cagcattgga tgttataaat gcgaacaaac tataatgtaa aaaacatgtc 51 agcagcatcg ggccatttca aactatgtaa ataatgaaga aattatatga 101 tctattctaa ataattaatt aggccaaata ttattctaag tgaaaaatgt 151 cacgctcaat ttctcttata taataactcc ttcccttgaa gcctttcttt 201 AACTCTTTTC ATCTTCCTTC TTCCTTCTTC TTCTTTAAAC ACAAAAAACC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01601 Mean Expected Number 0.005 -strand -56 : -63 TTTCACTT Totally 1 motifs of 1 different REs have been found Description of REs found 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transferase family protein |LOCUS: AT5G48930 |PROD: the same as GENE |complement(19853525..19855371) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +53 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.27 C - 0.21 1 aggacagagg gaacgggttt accaaccccg gatagaaaag taggaccgag 51 tgatgagatg gaccaatgat aaaccttctg agagagttgg tcgacagatg 101 gagtaggcgg ggtcgtgggg cggtaggtga aggattacga cctttccttt 151 tttgttcaca cccacttata tctacccctc ctcgcttctc acacaatttc 201 TCAGATCAAA CTCAAAACAA AATTTGTTTG TTCGTTTGAT CTTTCTTAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00621 Mean Expected Number 0.000 +strand -26 : -18 CCCCTCCTC AC RSP00654 Mean Expected Number 0.004 +strand -42 : -33 CACCCACTTa AC RSP00847 Mean Expected Number 0.008 -strand -140 : -149 CCAtCTCATC AC RSP00913 Mean Expected Number 0.004 +strand -149 : -140 GATGAGATGG AC RSP00914 Mean Expected Number 0.005 +strand -149 : -140 GATGAGATGG AC RSP01071 Mean Expected Number 0.009 -strand +38 : +29 CAAACGaACA Totally 6 motifs of 6 different REs have been found Description of REs found 597. Group RE: C-rich Q /AC: RSP00621//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich Q /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G49100 |PROD: the same as GENE |complement(19914596..19916340) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.49 G - 0.16 T - 0.18 C - 0.17 1 aaaagagagc tagatttaat aacaataata gaaaccaaaa atagaagaaa 51 caaagccacg tggatgtatg gttacattac acactagacc agaaaacctt 101 tttagtccat cccaaaccaa ccaaaaaagA TTGAtgaaaa aaaaaaacca 151 accaaaaaag attagtgtta aaaacctttt ggaagatttg aagaaaaaat 201 AGAGAAGAAA TAGAGAGAGA GGCCACAAGG CACACACAAG TCAGTATCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.001 -strand -20 : -26 CAAAAGG AC RSP00073 Mean Expected Number 0.001 +strand -146 : -137 GCCACGTGGa AC RSP00073 Mean Expected Number 0.001 -strand -137 : -146 tCCACGTGGC AC RSP00153 Mean Expected Number 0.001 -strand -138 : -147 CCACGTGGCt AC RSP00175 Mean Expected Number 0.000 -strand -139 : -146 CACGTGGC AC RSP00189 Mean Expected Number 0.001 -strand -137 : -146 TCCACGTgGC AC RSP00305 Mean Expected Number 0.007 +strand -104 : -99 CCTTTT AC RSP00305 Mean Expected Number 0.007 +strand -26 : -21 CCTTTT AC RSP00340 Mean Expected Number 0.004 -strand -137 : -146 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 +strand -146 : -137 GCCACGTGGA AC RSP00683 Mean Expected Number 0.004 +strand -146 : -137 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.000 +strand -145 : -138 CCACGTGG AC RSP00718 Mean Expected Number 0.000 -strand -138 : -145 CCACGTGG AC RSP00784 Mean Expected Number 0.000 -strand -137 : -146 TCCACGTGGC AC RSP00864 Mean Expected Number 0.005 +strand +12 : +20 AGAGAGAGA AC RSP01034 Mean Expected Number 0.003 -strand -140 : -146 ACGTGGC AC RSP01041 Mean Expected Number 0.007 -strand -21 : -26 AAAAGG AC RSP01041 Mean Expected Number 0.007 -strand -99 : -104 AAAAGG AC RSP01229 Mean Expected Number 0.000 +strand -90 : -77 CcCAAACCAACCAA AC RSP01722 Mean Expected Number 0.000 -strand -136 : -147 ATCCACGTGgCT AC RSP01734 Mean Expected Number 0.008 -strand -137 : -143 TCCACGT Totally 21 motifs of 17 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 292. Group RE: Pyr-box /AC: RSP00305//OS: Oryza sativa /GENE: RAmy1A/RE: Pyr-box /TF: unknown ||Identical REs AC: RSP01052 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 965. Group RE: Dof BS3 /Group TF: Dof family /AC: RSP01041//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS3 /TF: Dof family 1134. Group RE: P-box 4 /AC: RSP01229//OS: Arabidopsis thaliana /GENE: C4H/RE: P-box 4 /TF: unknown 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G49210 |PROD: the same as GENE |19966948..19968913 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +371 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.36 C - 0.14 1 ttaatccatt gactaacttc ttttaaacct tgagacagtg aaatactaac 51 tcattcaaca aaaatggatc aagaacaagg aaatattctg attaaagcca 101 atgtagtaat taatcgactg aataactaAC AATtttatga ttctgattaa 151 agccaattta ttcggttata ttcggtttac atatttgatt tagaatgttt 201 AGTTTTATTG GTTTGGTTCG AGTAGAATAA AATATTCACT GTTCGAACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00663 Mean Expected Number 0.000 -strand -35 : -47 aCCGAATAAATTG AC RSP00681 Mean Expected Number 0.009 +strand -94 : -86 TAATTAATC Totally 2 motifs of 2 different REs have been found Description of REs found 635. Group RE: SRD motif /AC: RSP00663//OS: Glycine max /GENE: VspB/RE: SRD motif /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hydroxyproline-rich glycoprotein family protein |LOCUS: AT5G49280 |PROD: the same as GENE |complement(19993820..19994675) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.06 T - 0.39 C - 0.24 1 taatatccca agaatctcca ataattaatc tccagtaaac tctattttat 51 aagaatcaga taaattctta atacactcca ccgaactttt actaattgtt 101 tctttattaa aacacctttt ttatgctgaa aatatttatt tataaattat 151 ttgtaaaagc catcgataaa aagaagaaca ctcctcctct gaacgtgctt 201 CTTCTTCTTC TTCTTCTTCT TCTTTCCCAC TCCTACTCTT TCTCCCTCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.001 +strand -49 : -42 TGTAAAAG AC RSP01778 Mean Expected Number 0.009 +strand -9 : -4 AACGTG Totally 2 motifs of 2 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 1577. Group TF: GL3 (Arabidopsis)/ChDEL65 (cotton) /AC: RSP01778//OS: Gossypium arboreum /GENE: GaMYB2/RE: T/G-box /TF: GL3 (Arabidopsis)/ChDEL65 (cotton) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G49410 |PROD: the same as GENE |20049689..20051225 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +438 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.17 1 gcatatattc gaaggatgga ggaggttttt tggcattcaa tggaaattat 51 ctatgtacta gatactctgt aacaaaaaaa taataaccac atcaatccaa 101 tactaATTGG aaagtaatca gttcaaacaa aattaaaatc atcccctgaa 151 acatacaaat atgtgtaata aagtcaaggg cttcttttgt aaatatccgt 201 AATTTATCTT CCAGAAATAG TTGCATTAAT TATCTCTGTG ACTCTGTCCC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00631 Mean Expected Number 0.001 -strand -110 : -122 TGTGGTTATTaTT AC RSP01104 Mean Expected Number 0.001 -strand -173 : -180 AAACCTCC Totally 2 motifs of 2 different REs have been found Description of REs found 607. Group TF: S2F /AC: RSP00631//OS: Spinacia oleracea /GENE: RPL21/RE: CII /TF: S2F 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: F-box family protein |LOCUS: AT5G49610 |PROD: the same as GENE |complement(20148500..20149955) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +202 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.13 T - 0.35 C - 0.24 1 agattttact aattcatcaa caattaattt ggaactacta tataactaac 51 acacacccat gcacatacac atatggaatg atcttcttta ttaacaaaat 101 ataatgggcc ttgggcctag tatttgtttA TTGGcccatt cagaaacatg 151 cgcttcttcc ccatcactaa acttgttcaa cgctcaagcg attcttcatc 201 ATCCGTTTCG CCATTTTTGT TTCTCAGTGA TCTCTGAAAT GGTCTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01016 Mean Expected Number 0.005 +strand -59 : -52 AGAAACAT Totally 1 motifs of 1 different REs have been found Description of REs found 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KOR1 |LOCUS: AT5G49720 |PROD: endo-1 |complement(20214617..20217514) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.31 C - 0.18 1 tcatagttgg ccaaaaatat actattccaa aattagagtt agctgtaacg 51 taacatgtac aaataaacca aacaaaacat ataataacaa aataattgaa 101 gtgagtttta aaaaggaaaa aaaaaaaaga gtaaaaaacc aaaaccagat 151 ctctcaaaga gtctttgtac attattgact agagagagct ttttagcttc 201 ACATTTCTTC ACTTCCACAC ACTTTTACTT CTTTCTCTCT TCTCTTCTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00454 Mean Expected Number 0.003 +strand -154 : -144 aACGTAACATG AC RSP00653 Mean Expected Number 0.002 +strand +33 : +43 TTCTCTCTtCT AC RSP00850 Mean Expected Number 0.005 -strand -190 : -195 GCCAAC Totally 3 motifs of 3 different REs have been found Description of REs found 432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: EMB1441 |LOCUS: AT5G49930 |PROD: zinc knuckle (CCHC-type) family protein |complement(20325261..20330034) |SUPPORT | 14 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.35 C - 0.22 1 aaacttctct aattagtgta ttagactaac cggttttaaa aaagcatgta 51 attttgattg gtttagataa ctaatgatcg tcttttatat tgggcttata 101 ggcccttcta gtcggcccaa cacacatgaa tagctcacaa atttctcttc 151 tccttcttcc tcttttctca cagcttagca cagaccgaat tttaatttct 201 AACTTTGACA AACAGATTAA AACCTTTCTT CGATTCGACA CTGAATCACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.007 -strand -140 : -146 CCAATCA AC RSP00359 Mean Expected Number 0.010 -strand -85 : -90 GCCGAC Totally 2 motifs of 2 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pyridoxamine 5'-phosphate oxidase-related |LOCUS: AT5G49970 |PROD: the same as GENE |20346429..20350381 |SUPPORT | 13 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.33 C - 0.14 1 tattccattt caaactatag ctacagttta aatcatctaa agaattgtat 51 atattatatc tagactctag taatcaaaat gaactatgtc ataggctaca 101 tggatataaa taaccaaaca aagttggtgg cttatttttg agagtttttg 151 ggtcataaag agactaccaa ttaattgttg ttgttgtggt gtgggaagtc 201 ATTGGGCTAA ATGAGGAATG TGATACGCAG AGTCACAACA ATGACATTCA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.002 -strand -60 : -71 TCAAAAATAaGC AC RSP01209 Mean Expected Number 0.006 -strand -78 : -87 CTTTGTTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: protein kinase, putative |LOCUS: AT5G50000 |PROD: the same as GENE |complement(20359813..20362359) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.34 C - 0.16 1 acacttattt tgataataag tgatgattat tgtttttgga aatacaaaac 51 aaaaaagtat ttattttatg aaaggaaaaa aagaaatgta aatacagata 101 cattagcgtc gaggcaagac catgtgctca ctcacatgcg gtcttctctt 151 ctcttctcat cttccctttt tatgattttc ttttcccatt ttcctctgcg 201 TTTGATTATC TGAGAGAGAG AGAGAAGAAA CTTGTTGAAA CAAAATCAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand +13 : +21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +15 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +17 : +25 AGAGAGAGA AC RSP01030 Mean Expected Number 0.010 +strand +26 : +33 AGAAACTT Totally 4 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G50100 |PROD: the same as GENE |20389079..20390667 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.20 C - 0.26 1 cgacctaacc taaccacaca cgggatacgc tcgatgttcc cattctccac 51 ggtactccaa cactggcata caatacaaaa cattgaagga gacagtaatg 101 ccacgtgcac ggctctgcac cataaaattt aacgcctctg atttaaaaca 151 ccacacattg acaaattgac ataaccaaag ctacatagag aaaaaacacc 201 AAAAATCAAA ATTCCATCAA AGGGGCTTTT AAAATTTTGG ACAAGAACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.009 +strand -101 : -92 GCCACGTgCA AC RSP00175 Mean Expected Number 0.001 -strand -94 : -101 CACGTGGC AC RSP00682 Mean Expected Number 0.001 +strand -101 : -92 GCCACGTGcA AC RSP01034 Mean Expected Number 0.007 -strand -95 : -101 ACGTGGC AC RSP01114 Mean Expected Number 0.003 -strand +40 : +34 CCAAAAT AC RSP01593 Mean Expected Number 0.000 -strand -92 : -103 TGCACGTGGCAT Totally 6 motifs of 6 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: methyltransferase-related |LOCUS: AT5G50110 |PROD: the same as GENE |20390794..20393433 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +634 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.31 C - 0.15 1 aatgattttg taaaggttag cttactaatg ttattgaaat atttgtttga 51 ataatgaaaa tgaaattcaa cattgtagat ttgttcccag tcaccaaaga 101 agaaaaaagg ttgtatgtga aaaaaaaact ttaagaaTCA ATagaatatg 151 agatcaattt gttcatttgt tgaaaacacc aaaaaaatgc actgcgtctc 201 ACATATTCTC TCTCTGGGGC ATTTAATCAA ACACCTTCCA TGCACCAAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.006 +strand +39 : +45 CATGCAC AC RSP00036 Mean Expected Number 0.003 +strand +28 : +35 CAAACACC AC RSP00230 Mean Expected Number 0.006 -strand -178 : -187 AAgCTAACCT AC RSP00864 Mean Expected Number 0.000 -strand +15 : +7 AGAGAGAGA AC RSP01000 Mean Expected Number 0.001 -strand +22 : +13 ATGCCCCAgA AC RSP01014 Mean Expected Number 0.006 -strand -32 : -41 CAAATGAACA Totally 6 motifs of 6 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G50335 |PROD: the same as GENE |complement(20506320..20506953) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +112 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.32 C - 0.13 1 caacgaattt ggtttggtta attggttgtt tagaacaaat atccaagcaa 51 aatatagtag tacatagtaa acacaacgaa tttggaataa caaacttttg 101 agcaaatgca tcatttacac gtgttaaaat acggtttggt ggtttagaac 151 atagatccaa gcaaaaatta ttaaaatgcc atttcgaact agtccaaatt 201 ATAGTTTATA CTTTATTATT AAAAAAAAAC TTGGCTCTAT ATATATGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.005 +strand -84 : -78 ACACGTG AC RSP00524 Mean Expected Number 0.004 -strand -77 : -83 ACACGTG AC RSP00792 Mean Expected Number 0.004 +strand -158 : -149 CCAAGCAAaA AC RSP00792 Mean Expected Number 0.004 +strand -44 : -35 CCAAGCAAaA AC RSP00817 Mean Expected Number 0.002 +strand -85 : -76 TACACGTGtT AC RSP00920 Mean Expected Number 0.001 -strand -102 : -113 AAAAGTTtGTTA AC RSP01237 Mean Expected Number 0.001 +strand +35 : +44 CTCTATATAT AC RSP01256 Mean Expected Number 0.002 +strand -84 : -77 ACACGTGT AC RSP01256 Mean Expected Number 0.002 -strand -77 : -84 ACACGTGT AC RSP01717 Mean Expected Number 0.000 +strand -86 : -75 tTACACGTGTTA Totally 10 motifs of 7 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 850. Group TF: MYB.Ph3 /AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/RE: MBSII /TF: MYB.Ph3 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1525. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01717//OS: Arabidopsis thaliana /GENE: ARF18 (At1g23750)/RE: G-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G50360 |PROD: the same as GENE |complement(20522406..20523564) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +30 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.17 T - 0.31 C - 0.27 1 ctcgctctcc tattggtcac cacttccctc gtacttcgag tctcaatgtc 51 ggattcaaac aaaacgccac gtctctaacc ttcgtccaat cacgtcgttg 101 cgctgttcat cgtttggtct cgcacgtggc aaggttttct ccaaacgtgt 151 cgacgtaaga gttttctttt ctttatatac acaccaaaca cttcttctcc 201 AACAAAACAA ACTTGTTTGT TAGACAAAAC ATGAATTTCC GGGGAGGTTG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.006 +strand -80 : -71 CGCACGTGgC AC RSP00175 Mean Expected Number 0.002 +strand -78 : -71 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -126 : -135 GAgACGTGGC AC RSP00734 Mean Expected Number 0.003 +strand -141 : -134 CAAAACGC AC RSP00819 Mean Expected Number 0.005 +strand -135 : -126 GCCACGTCTc AC RSP01034 Mean Expected Number 0.007 +strand -77 : -71 ACGTGGC AC RSP01106 Mean Expected Number 0.001 +strand -137 : -127 ACGCCACGTCt Totally 7 motifs of 7 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: adenylate kinase, putative |LOCUS: AT5G50370 |PROD: the same as GENE |complement(20526385..20527926) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.23 T - 0.27 C - 0.17 1 atttgatttt atgtaattat gaaaaatgtg cgatattaga tgtgtaagaa 51 gaaagactcg ttttcagagt tgggtgtgtc accaacccca ggcaggttgt 101 tgttgttcga agggcaggcc tttgtagttg ttggcacagt taagggtaaa 151 atcgtaaaac ggtgaaagaa aacattggaa gcatcgaatc caatacacgc 201 ACTTCAAAAA GAGAACACAA CTCCACCGGA CCAAATCTAA TTCTCTTGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00654 Mean Expected Number 0.002 +strand -5 : +5 CACgCACTTC AC RSP00881 Mean Expected Number 0.009 -strand -97 : -106 AaCAACAACC AC RSP00950 Mean Expected Number 0.000 +strand -123 : -113 gTCACCAACCC AC RSP01043 Mean Expected Number 0.000 +strand -124 : -112 TgTCACCAACCCC AC RSP01083 Mean Expected Number 0.000 +strand -124 : -113 TgTCACCAACCC AC RSP01091 Mean Expected Number 0.004 -strand -189 : -199 ATAaAATCAAA AC RSP01454 Mean Expected Number 0.007 +strand -120 : -114 ACCAACC Totally 7 motifs of 7 different REs have been found Description of REs found 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 967. Group RE: FP2 /AC: RSP01043//OS: Solanum tuberosum /GENE: St4cl-1/RE: FP2 /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SAE1B |LOCUS: AT5G50580 |PROD: SUMO activating enzyme, putative |20602575..20604821 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +151 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.31 C - 0.14 1 tcagggagaa tcgtataaaa gtcttccatg tctttaaaag ttttgcagat 51 ggatttaaaa gatttggggt ccaaagccca tgtttcattt gtttcggccc 101 ataaattgtc ctaaaaaata acaaATTGGt tatttattga atgcacagtt 151 gttttgaatt taaaaatttg tagttgacga accggaccaa accaaaacaa 201 ACCATGTAAT TTGAATAAAT AAAAAGAAAG CAATTTTCCG GTTAACAAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01015 Mean Expected Number 0.006 -strand -110 : -119 CAAATGAAAc AC RSP01458 Mean Expected Number 0.006 +strand -43 : -31 ATTTAAAAATTTg AC RSP01639 Mean Expected Number 0.008 +strand -97 : -88 AATTGTCCTA Totally 3 motifs of 3 different REs have been found Description of REs found 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: squamosa promoter-binding protein, putative |LOCUS: AT5G50670 |PROD: the same as GENE |complement(20632930..20635050) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +691 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.08 T - 0.43 C - 0.22 1 tcttcacttt ttcttactca aagtttttaa aaaatgatat caataaaacc 51 ctaaatcagg aaagtaaagt tacaattaaa gtaagtaaat catttcttaa 101 cttagtaata gctattatca TCAATttctc tctctctttc ctctttctct 151 tatttgcatt attgaagtag cagccacact tgttgtctcc actttctctt 201 GCTAAACTCC ATCATCTTCT CTTTCTTTTT TTTCACTTGT CCCATTTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -147 : -155 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -155 : -147 AAACCCTAA AC RSP00864 Mean Expected Number 0.008 -strand -64 : -72 AGAGAGAGA AC RSP00864 Mean Expected Number 0.008 -strand -66 : -74 AGAGAGAGA AC RSP01003 Mean Expected Number 0.004 +strand -129 : -120 ACAATTAAaG AC RSP01054 Mean Expected Number 0.002 +strand -135 : -125 AAaGTTACAAT AC RSP01303 Mean Expected Number 0.005 +strand -156 : -147 aAAACCCTAA AC RSP01776 Mean Expected Number 0.003 +strand -129 : -119 ACAATTAAAGt Totally 8 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 974. Group TF: GT-3a /AC: RSP01054//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (1) /TF: GT-3a 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: rubredoxin family protein |LOCUS: AT5G51010 |PROD: the same as GENE |20761792..20762929 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.35 C - 0.22 1 aagactaatt aatcttgttt gatatgatca taaagcgtct taacatcatc 51 gcatcaatgt ttgtttgtct atgatttttc agacaattta gaaaataata 101 aaaaaaaaat aaaaatggaa atctgacgtg gcgagtgaga gggcttgtga 151 ggagcacact cttccacatc tttttcccac tcttccttct tatcactttc 201 CTCTTCTCTC TTCTCCTCTG ATCCCACCAC ACTTTTGAAC TTTCACTCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.006 +strand -106 : -98 ATAATAAAA AC RSP00113 Mean Expected Number 0.000 +strand -77 : -69 TGACGTGGC AC RSP00208 Mean Expected Number 0.000 -strand -69 : -80 GCCACGTCAGaT AC RSP00214 Mean Expected Number 0.001 +strand -77 : -70 TGACGTGG AC RSP00215 Mean Expected Number 0.001 -strand -70 : -77 CCACGTCA AC RSP00247 Mean Expected Number 0.003 -strand -69 : -78 GCCACGTcAG AC RSP00248 Mean Expected Number 0.001 -strand -69 : -78 GCCACGTCAG AC RSP00653 Mean Expected Number 0.007 +strand +4 : +14 TTCTCTCTtCT AC RSP00681 Mean Expected Number 0.006 +strand -195 : -187 TAATTAATC AC RSP01034 Mean Expected Number 0.003 +strand -75 : -69 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -67 : -77 tCGCCACGTCA AC RSP01160 Mean Expected Number 0.000 +strand -80 : -69 ATCtGACGTGGC AC RSP01656 Mean Expected Number 0.000 +strand -79 : -68 TCTGACGTGGCg Totally 13 motifs of 13 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 201. Group TF: MAT2 (ROM2) /AC: RSP00208//OS: French Phaseolus vulgaris /GENE: DLEC2/RE: DLEC2,A /TF: MAT2 (ROM2) 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1073. Group RE: G-box /Group TF: CG-1 /AC: RSP01160//OS: Nicotiana plumbaginifolia /GENE: CAB/RE: G-box /TF: CG-1 1474. Group TF: HY5 /AC: RSP01656//OS: Arabidopsis thaliana /GENE: ARF19 (At1g19220)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51020 |PROD: the same as GENE |complement(20762680..20764472) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.32 C - 0.20 1 ataattttta ttaatatttc gtttttatta ccaattgttt taagaaattt 51 aaataaaaat tagaagaata acaattttca ttttcaatcc actaaaagaa 101 ttaaaaaacg attacacgtg gcaaACAATc tcaccactgg ttcggcgagg 151 cgaaaacgtc gatcgtcaca accttactcc tcctcctctt cctctttctc 201 TAATCGGCAA AATTTTCTGC TCCTGAGAAA CAAGTAGAGA TACTAAAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -87 : -79 ACACGTGGC AC RSP00175 Mean Expected Number 0.000 +strand -86 : -79 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -88 : -79 tACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -89 : -78 TtACACGTGGCA AC RSP00428 Mean Expected Number 0.002 +strand -98 : -87 AAAAAACGaTTA AC RSP00524 Mean Expected Number 0.006 +strand -87 : -81 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -79 : -88 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -88 : -79 TACACGTGGC AC RSP00936 Mean Expected Number 0.000 -strand -78 : -89 TGCCACGTGTaA AC RSP00938 Mean Expected Number 0.000 -strand -78 : -89 TGCCACGTGtAA AC RSP01034 Mean Expected Number 0.002 +strand -85 : -79 ACGTGGC AC RSP01058 Mean Expected Number 0.009 -strand -107 : -114 TAGTGGAT AC RSP01255 Mean Expected Number 0.001 +strand -87 : -80 ACACGTGG AC RSP01593 Mean Expected Number 0.000 +strand -88 : -77 TACACGTGGCAa Totally 14 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51110 |PROD: the same as GENE |complement(20795360..20796660) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.27 C - 0.23 1 gatactttcg gaattatgaa atcttaagta gattcaccaa aagtggacac 51 aaaagtacaa tcaaacccaa tgggcttctc agattaaaac gtgacgtgta 101 aagtcggtcc cacgaaagtt tATTGTggtt cccattagtc attagtgatt 151 acgtggcacc tcacccattt aactcagtcc agtggtctga aaatcgtttc 201 GCTCTCTAAA AACCAAAACT CTTATCTTCG GTACAGAGCA AATCACAGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 +strand -51 : -44 TACGTGGC AC RSP00064 Mean Expected Number 0.003 +strand -53 : -44 AtTACGTGGC AC RSP00227 Mean Expected Number 0.002 -strand +28 : +20 AAGATAAGA AC RSP00247 Mean Expected Number 0.004 -strand -44 : -53 GCCACGTAAt AC RSP00270 Mean Expected Number 0.003 -strand -154 : -164 TcCACTTTTGG AC RSP00395 Mean Expected Number 0.010 +strand -177 : -168 TTAaGTAGAT AC RSP00495 Mean Expected Number 0.005 +strand -104 : -97 TGTAAAGT AC RSP01034 Mean Expected Number 0.006 +strand -50 : -44 ACGTGGC AC RSP01258 Mean Expected Number 0.002 +strand -109 : -102 TGACGTGT AC RSP01621 Mean Expected Number 0.008 -strand -154 : -163 TcCACTTTTG Totally 10 motifs of 10 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 378. Group TF: Opaque-1 /AC: RSP00395//OS: Zea mays /GENE: gamma-27kDa zein/RE: O2-like-box /TF: Opaque-1 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: polyadenylate-binding protein, putative / PABP |LOCUS: AT5G51120 |PROD: the same as GENE |20796906..20798756 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +80 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.35 C - 0.23 1 cacgtaatca ctaatgacta atgggaacca caataaactt tcgtgggacc 51 gactttacac gtcacgtttt aatctgagaa gcccattggg tttgattgta 101 cttttgtgtc cacttttggt gaatctactt aagatttcat aattccgaaa 151 gtatcctttt tgggtatctt taattacaaa caaaccttcc cttctttccc 201 GATTTCAAGC CCTAAAATTC CGAGACTTCT GTTTCTCGCT TTAACGACAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 +strand -92 : -82 TcCACTTTTGG AC RSP01033 Mean Expected Number 0.010 +strand -46 : -37 CCTTTTTGGG AC RSP01071 Mean Expected Number 0.010 -strand -95 : -104 CAAAaGTACA AC RSP01214 Mean Expected Number 0.004 +strand -46 : -37 CCTTTTTGGG AC RSP01258 Mean Expected Number 0.003 -strand -137 : -144 TGACGTGT Totally 5 motifs of 5 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 989. Group TF: PvAlf /AC: RSP01071//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Em1c /TF: PvAlf ||Identical REs AC: RSP01153 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pseudouridine synthase family protein |LOCUS: AT5G51140 |PROD: the same as GENE |complement(20801157..20804035) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.25 C - 0.20 1 gaaccaaatg tatttcgttt taaattctat aacatttcct cgtgtaatca 51 ataaaccaaa taccaaatca accgatcaaa accaaaccgg attaccaaac 101 gtattacatt aattttccgg tttggtgtag cttaaaacat ggttaaaccc 151 aaaccaatac gaatttgttt gaagtttaga ttgacagcga ccaccggcta 201 AGATTAATCT AAAAACATGA AACGAAAGCA GCAAGAAGAC GACAACGACG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.008 +strand -124 : -116 CAAAACCAA AC RSP01092 Mean Expected Number 0.004 -strand -171 : -181 ATAGAATtTAA Totally 2 motifs of 2 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 1010. Group RE: box 1* /AC: RSP01092//OS: Pisum sativum /GENE: GS2/RE: box 1* /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51170 |PROD: the same as GENE |complement(20811024..20812625) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.20 G - 0.24 T - 0.43 C - 0.14 1 taatgatgaa acctccggcg attggtgtct aatttatagg gaacgtaatt 51 agggttttgc tttgatcttc ggtgaaggcc cattctcggc ccgttaatgg 101 tttccgaATT GTgctgcttt gtcttcgcgg atggttcggt ttatattcgg 151 ttcgctttaa tttggttata ttagaatcat tttggtttaa tctggtttat 201 GCTTGAAAAT GAAATCTGGT TTAAATAGTT TCTCTGTTTG GTTTTTCTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.009 +strand -152 : -144 TTAGGGTTT AC RSP00369 Mean Expected Number 0.009 -strand -144 : -152 AAACCCTAA AC RSP01104 Mean Expected Number 0.000 +strand -192 : -185 AAACCTCC Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51390 |PROD: the same as GENE |complement(20895193..20895690) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.39 C - 0.15 1 gtgtaatcat gatttatcat tatctcaaaa ttaagatttt ctatgcctaa 51 aatatctgat ttgcattatt tctataggta gataaatttc tcctttttgg 101 ataaatatga atctttgaaa aaatcgcaac acgttttgca ttatataatt 151 cttatatatc tagtcctatt aaaataacaa aataccaaac tttttcttat 201 AAGTAACGAT AACTACGAAA TTAGGTATAC AAGTCTCTGC CCTACGTTTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00955 Mean Expected Number 0.001 -strand -64 : -75 AAAACGTGTTGc AC RSP01702 Mean Expected Number 0.008 +strand -73 : -64 AACACGTtTT Totally 2 motifs of 2 different REs have been found Description of REs found 882. Group TF: JAMYC2; JAMYC10 /AC: RSP00955//OS: Lycopersicon esculentum /GENE: LAP/RE: T/G-box /TF: JAMYC2; JAMYC10 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51400 |PROD: the same as GENE |complement(20895839..20897360) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.27 C - 0.15 1 ccggctaaaa ctatcaaatc ggaaaacaat gtgaaagaag tcaacaaatt 51 ttaattatgg aaatttcttc tgcagttaaa cgtcatcgtt ttacataatg 101 cgtagcttaa ttaatgagtt gagtgagtca acggaagaga agaagaccaa 151 attagtctta aactcgttta ggtaacagtt tggtttaaag cacagaaaca 201 GCCCTTCAAT AAGTTTCAAT GTCATAAAAC CAAAAAAAAA AAAAATAGTG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00595 Mean Expected Number 0.002 +strand -96 : -88 GCTTAATTA AC RSP00997 Mean Expected Number 0.002 -strand -114 : -123 GATGACGTTT AC RSP01654 Mean Expected Number 0.004 -strand -114 : -123 GATGACGTTT Totally 3 motifs of 3 different REs have been found Description of REs found 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51510 |PROD: the same as GENE |20938659..20940204 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +79 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.31 C - 0.16 1 aagagaatga attaagtata gtttttaaca aaaagaaaaa gtaagaataa 51 gtatagttat tcaaaaaaat gttaggccgt aatctttagc taaaggattt 101 agctcggttt agtttgggtt tggttcggtt tagttcggtt aaatgctaaa 151 tcctatcgaa aaataaaaac aacaaaaatc taataaactt tgttgactat 201 ACCCTAACAC CCTACTAACA CCTCCCTCTT TCAATCTCCG ATCAAATACA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.007 -strand -7 : -16 AACAAAGTtT AC RSP00941 Mean Expected Number 0.008 +strand +29 : +36 TTTCAATC AC RSP00949 Mean Expected Number 0.004 -strand -2 : -9 TAGTCAAC AC RSP01303 Mean Expected Number 0.005 +strand -3 : +7 TAtACCCTAA AC RSP01594 Mean Expected Number 0.008 -strand +36 : +29 GATTGAAA Totally 5 motifs of 5 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: leucine-rich repeat transmembrane protein kinase |LOCUS: AT5G51560 |PROD: the same as GENE |20962913..20966080 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +120 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.28 C - 0.24 1 tagtcagagt ggaccaacat caacgagata agataacata aaaaccaact 51 caccataact aaaaacatcc caagagatcc aacgattcat atcaaacaca 101 aaaacatcga acgatcagat ttaaaccatc tctggtatct ccaaaacaca 151 aacacttttt tttttctttt gtctgaatgg aacaaaagca tgcgacatct 201 CTGTGTCTTT ATCTTCTCTC TCCTCTTCTT GAAAAACTGA ACCTTTAATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00441 Mean Expected Number 0.007 -strand -40 : -49 AAaAAAGTGT AC RSP00653 Mean Expected Number 0.003 +strand +14 : +24 TTCTCTCTCCT AC RSP00865 Mean Expected Number 0.001 -strand +23 : +15 GGAGAGAGA AC RSP01053 Mean Expected Number 0.002 +strand -174 : -166 GATAAGATA Totally 4 motifs of 4 different REs have been found Description of REs found 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: KEA5 |LOCUS: AT5G51710 |PROD: K+ efflux antiporter, putative (KEA5) |complement(21021504..21025944) |SUPPORT | 20 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +138 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.28 C - 0.23 1 gtcgaagtgt cgaaccaaag cttgtatata ttgccctagc tgtggaattg 51 cttcaaaaat gagtgtcgtg caaaacggac tagttctctt ctctctcacg 101 acgagacttt aataagaacc caaaacaagt tcgcATTGAc acgtactaca 151 ctaattaaac aacaactatt aacaaccatt caacacaaaa actctttccc 201 ATTGATTCAA TTTCAAAATT TTGGATCTAA TAAAACCAAA ACTCTCATTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00064 Mean Expected Number 0.004 -strand -54 : -63 AGTACGTGtC AC RSP00070 Mean Expected Number 0.003 -strand -56 : -63 TACGTGTC AC RSP00129 Mean Expected Number 0.009 -strand -131 : -136 CACGAC AC RSP00778 Mean Expected Number 0.005 -strand +9 : -1 TGAATCAATG AC RSP01035 Mean Expected Number 0.008 -strand -57 : -63 ACGTGTC AC RSP01114 Mean Expected Number 0.009 -strand +24 : +18 CCAAAAT Totally 6 motifs of 6 different REs have been found Description of REs found 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1033. Group RE: CCAAT box-like motif 1 /AC: RSP01114//OS: Agrobacterium tumefaciens /GENE: ags/RE: CCAAT box-like motif 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G51720 |PROD: the same as GENE |21026822..21027571 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +49 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.35 C - 0.20 1 aaatgtaagt aaaaaataaa ttttgcagct gatttttcat atttttgtga 51 ttaaatctca tgtgagtttg tgaccatatc ttttgattct tccatctcat 101 acacacgctt tacgacgtcg tttagcagag ggagcgtgat ggccacaagc 151 tctctctctc cctttacctt tcatatatct aatatcttct gtcttacttc 201 ATAAACAAAT CACTGCCACA TAGAGAGTGA GTAAGAGAGA GTTATTCCAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00039 Mean Expected Number 0.007 +strand -138 : -128 TGAgTTTGTGA AC RSP00319 Mean Expected Number 0.002 -strand -10 : -18 CAGAAGATA AC RSP00713 Mean Expected Number 0.007 +strand -175 : -169 CAGCTGA AC RSP00864 Mean Expected Number 0.002 -strand -42 : -50 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand -40 : -48 GGAGAGAGA Totally 5 motifs of 5 different REs have been found Description of REs found 38. Group TF: GT-1 related TFs /AC: RSP00039//OS: Lycopersicon esculentum /GENE: LAT56; LAT59;/RE: 56/59 box /TF: GT-1 related TFs 305. Group TF: R-GATA /AC: RSP00319//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: GATA motif /TF: R-GATA 679. Group TF: MYC /AC: RSP00713//OS: Hordeum vulgare /GENE: HvLTP2/RE: MYC RS /TF: MYC 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: sorbitol dehydrogenase |LOCUS: AT5G51970 |PROD: the same as GENE |21128671..21130629 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +375 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.33 C - 0.14 1 taagctttta agtattgaca aatccgagtt gtgtgggtta caattttttg 51 ttagtgttgc accacatttg ttttaggatg tgttccatga acatattcat 101 gatcttgtta tgtttgatgg aaaccaccaa agtgagagaa ttcagaagca 151 attgcatatt ctgagataca aagaagccag ccaaagtaaa tgaaaaaaat 201 ATTTCTTATG ACTTCATTAG CATTATGATA CGAGGCATAA AAAACCTTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00745 Mean Expected Number 0.001 -strand +50 : +39 GAAAGGTTtTTT Totally 1 motifs of 1 different REs have been found Description of REs found 707. Group TF: GT-1 /AC: RSP00745//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 5 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (C2H2 type) family protein |LOCUS: AT5G52010 |PROD: the same as GENE |complement(21138718..21140211) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +169 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.27 C - 0.24 1 atcatgtcca atatattctc acccatcctt atgcattgtg tctcatgtgt 51 ctttagcata tttcatatcc ctggatcaac ttgagttagt gaaacagtta 101 gaaagtaaaa aacaaaggta aagtctctct cgtcaagacc ctccgagtgt 151 acaagaggct ctcaaacaac aaaagcaaaa ggataaactt ttgttagctc 201 AGACTATCCA CATAGCCGTC GTCTTCCTCG CCGGACATGC TAGAAGATAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 +strand -101 : -90 AgAAAGTAAAAA AC RSP01469 Mean Expected Number 0.007 +strand -160 : -151 TCtCATGTGT AC RSP01621 Mean Expected Number 0.007 +strand -17 : -8 TAaACTTTTG AC RSP01757 Mean Expected Number 0.003 +strand -69 : -62 GTCAAGAC Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: dihydrodipicolinate reductase family protein |LOCUS: AT5G52100 |PROD: the same as GENE |21187371..21189571 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.47 G - 0.15 T - 0.21 C - 0.18 1 ggcaaagtaa ccttcttagt gtaaaatttt tagaatgccc tcaaccaaat 51 tttaaagtgt ttaaaaaaaa aaaattaaag tgtttaaaaa aaaaaaaaaa 101 acacgaagag ccaagtaacc ttatccattc atacgcctca aacagagacg 151 acagcgtttg aagtagaaga caaaggacag tgcaagaatc tcttatcaac 201 ATGAGAAAAC CATCAAGCAA AAAAAAGAAA CACAAAAGCT ATCTCCGAGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00722 Mean Expected Number 0.006 -strand -4 : -10 GATAAGA AC RSP00750 Mean Expected Number 0.002 +strand -185 : -174 TTAgTGTAAAAT AC RSP00874 Mean Expected Number 0.008 +strand -151 : -141 TTTTAAAGTGt AC RSP01056 Mean Expected Number 0.008 -strand -187 : -197 AAgGTTACTTT AC RSP01476 Mean Expected Number 0.007 +strand -150 : -143 TTTAAAGT AC RSP01767 Mean Expected Number 0.004 -strand -169 : -177 TAAAAATTT Totally 6 motifs of 6 different REs have been found Description of REs found 687. Group RE: I-box /AC: RSP00722//OS: Nicotiana plumbaginifolia /GENE: rbcS 8B/RE: I-box /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 976. Group TF: GT-3a /AC: RSP01056//OS: Arabidopsis thaliana /GENE: cab2/RE: GT-3a Box III (3) /TF: GT-3a 1344. Group RE: E motif /AC: RSP01476//OS: Oryza sativa /GENE: GluA-3/RE: E motif /TF: unknown 1570. Group RE: AT-rich element /AC: RSP01767//OS: Zea mays /GENE: Bz1/RE: AT-rich element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: sugar isomerase (SIS) domain-containing protein |LOCUS: AT5G52190 |PROD: the same as GENE |complement(21218956..21219769) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +100 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.37 C - 0.18 1 ttttatcaat ttgaatcttc cagaaattta agaaggaaac aaaaactccc 51 atcaattatg tgattgtctt ttatagcatt ttgaatgcaa tttcttactg 101 tcacctctgt tcttccatgt tctatgttct tacatcatat tccaaatttg 151 tcattgtatt tttgtttgat atgacattaa aaccgaaccg aaccggaatt 201 CAATTAACCA CCGAATCAAA CGGTATAAAT TTGTAAACGT GGTCCAAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00870 Mean Expected Number 0.009 +strand +32 : +41 TGTAAAcGTG AC RSP01221 Mean Expected Number 0.003 +strand +5 : +12 TAACCACC Totally 2 motifs of 2 different REs have been found Description of REs found 806. Group RE: EM2 /AC: RSP00870//OS: Triticum aestivum /GENE: LMWG-1D1/RE: EM2 /TF: unknown 1128. Group RE: GARE /AC: RSP01221//OS: Oryza sativa /GENE: Amy3E (Amy8)/RE: GARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATGB1 |LOCUS: AT5G52210 |PROD: ADP-ribosylation factor, putative |21222217..21224324 |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +576 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.32 C - 0.19 1 aagaagatac gagggtcaac taaagatgca acagaaaccg tccgtttgtt 51 tgacttttat cactgttgca tccagattcc gccacgtgga ttacttcaaa 101 cccgttcgAT TGAtcaagcg cgtgaagact tgagtaaggg tagtttcgga 151 aatacacttt agaagttttt ttttttttcc tttttcctga gaacgatcga 201 ATCGAAGACG GAGTGTGCAA AAGCCAAAGC TTTGATCTTT CATTAATTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -120 : -111 GCCACGTGGa AC RSP00073 Mean Expected Number 0.002 -strand -111 : -120 tCCACGTGGC AC RSP00153 Mean Expected Number 0.002 -strand -112 : -121 CCACGTGGCg AC RSP00175 Mean Expected Number 0.001 -strand -113 : -120 CACGTGGC AC RSP00189 Mean Expected Number 0.003 -strand -111 : -120 TCCACGTgGC AC RSP00340 Mean Expected Number 0.004 -strand -111 : -120 TCCACGTGgC AC RSP00682 Mean Expected Number 0.002 +strand -120 : -111 GCCACGTGGA AC RSP00683 Mean Expected Number 0.004 +strand -120 : -111 GCCAcGTGGA AC RSP00718 Mean Expected Number 0.001 +strand -119 : -112 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -112 : -119 CCACGTGG AC RSP00784 Mean Expected Number 0.000 -strand -111 : -120 TCCACGTGGC AC RSP00961 Mean Expected Number 0.004 +strand +16 : +23 TGCAAAAG AC RSP01034 Mean Expected Number 0.007 -strand -114 : -120 ACGTGGC AC RSP01621 Mean Expected Number 0.009 +strand -48 : -39 TACACTTTaG Totally 14 motifs of 12 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1441. Group TF: GmDof4; GmDof22 /AC: RSP01621//OS: Glycine max /GENE: Synthetic OLIGO/RE: E4 /TF: GmDof4; GmDof22 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: heavy-metal-associated domain-containing protein |LOCUS: AT5G52750 |PROD: the same as GENE |21401269..21402150 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.40 C - 0.17 1 ataaaaataa atataaaatt ggtagagaat gagtcattct gaatgactac 51 tttaacctct ttgtggtcgt tattgcaata ctatttttat ttaaaaaata 101 caaaaacttt cccttgtggc cttgtgggtc atatataata atacttgcaa 151 attccttggc aatttctatt taaaccgatt tcagtagact tgctattgtc 201 ATCATTTCAT ATCTTAGATC ATCTCTCTTC TCTCTCTTTC TCTTAAGAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00190 Mean Expected Number 0.009 +strand -171 : -165 TGAGTCA AC RSP00653 Mean Expected Number 0.005 +strand +28 : +38 TTCTCTCTCtT AC RSP00664 Mean Expected Number 0.001 +strand -172 : -164 ATGAGTCAT AC RSP00861 Mean Expected Number 0.005 -strand +41 : +33 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +37 : +29 AGAGAGAGA AC RSP01000 Mean Expected Number 0.001 -strand -69 : -78 ATGaCCCACA AC RSP01278 Mean Expected Number 0.003 +strand -172 : -164 ATGAGTCAT AC RSP01278 Mean Expected Number 0.003 -strand -164 : -172 ATGACTCAT Totally 8 motifs of 7 different REs have been found Description of REs found 184. Group RE: GCN4 box /AC: RSP00190//OS: Oryza sativa /GENE: GluB-1/RE: GCN4 box /TF: unknown ||Identical REs AC: RSP00666 RSP00959 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 636. Group RE: C-box /Group TF: Opaque-2 (O2); TGA1 /AC: RSP00664//OS: Pisum sativum /GENE: psl/RE: C-box /TF: Opaque-2 (O2); TGA1 ||Identical REs AC: RSP00687 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1177. Group TF: AP1/GCN4 /AC: RSP01278//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: B consensus /TF: AP1/GCN4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G52780 |PROD: the same as GENE |complement(21408099..21408700) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +25 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.48 G - 0.15 T - 0.24 C - 0.13 1 aacactaatt ccatgttctt aaaatacaaa attgaagaaa atgttccaac 51 ggtattattt tcatgaaatg aagaaaaaga tataaagaag gataaatagt 101 atgaaatgtg tgGCAATgaa catatcccaa agataaaaac aaaatatgca 151 ttatccctaa agacaaaacc atataataca tgtagataag ataaataaag 201 AAAAACATTA GAAGAAGAAA TAGAAATGAG AGCTCTCTTG TGCTCACACC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00596 Mean Expected Number 0.006 -strand -87 : -92 GCCACA AC RSP01053 Mean Expected Number 0.008 +strand -16 : -8 GATAAGATA Totally 2 motifs of 2 different REs have been found Description of REs found 572. Group RE: Box II EE2 /AC: RSP00596//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE2 /TF: unknown 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pyruvate kinase, putative |LOCUS: AT5G52920 |PROD: the same as GENE |21480769..21484043 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.34 C - 0.22 1 catttcgcaa tcctcaaaag ttacaagtca aactaaaaca ccgagatttg 51 gcccacatgg tctaaatggg cttataaatt ggtccaaaag tacgagttta 101 aacgccgtcg ttttgggttg tgtcttattt tgtttttttc taaaaattaa 151 tttaattttc caactactta atgatttgtc atgcttcttc gatacgaact 201 AAGCACTTCT TCTCCGCCTT CGTAAGTTCC GCCGAAAAGA ACCAAATCCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00421 Mean Expected Number 0.006 +strand -161 : -155 ACCGAGA Totally 1 motifs of 1 different REs have been found Description of REs found 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G52960 |PROD: the same as GENE |21494372..21495662 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.25 T - 0.30 C - 0.15 1 gaagcagaga gagagaagat tcgattttgg ttttgaggtt gaagaagaga 51 ggagggagtg agctacgagg ttatgttttt ggcgggaaac atattgccac 101 gtcattagat tgtcaatttA TTGGgtcttg cttactacta catcataagg 151 ccattaatgg cccaacaaga gttttaattt ggtgacgtgg caaaattgaa 201 GATAGAACAA AGATTACGAA AACTTCCTCC GCTTCAGATT TTTCCTTTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00015 Mean Expected Number 0.004 -strand -112 : -119 TTTCCCGC AC RSP00113 Mean Expected Number 0.001 +strand -18 : -10 TGACGTGGC AC RSP00113 Mean Expected Number 0.000 -strand -97 : -105 TGACGTGGC AC RSP00214 Mean Expected Number 0.004 +strand -18 : -11 TGACGTGG AC RSP00214 Mean Expected Number 0.001 -strand -97 : -104 TGACGTGG AC RSP00215 Mean Expected Number 0.001 +strand -104 : -97 CCACGTCA AC RSP00215 Mean Expected Number 0.004 -strand -11 : -18 CCACGTCA AC RSP00248 Mean Expected Number 0.002 +strand -105 : -96 GCCACGTCAt AC RSP00248 Mean Expected Number 0.003 -strand -10 : -19 GCCACGTCAc AC RSP00716 Mean Expected Number 0.003 -strand -166 : -174 CAAAACCAA AC RSP00819 Mean Expected Number 0.002 +strand -105 : -96 GCCACGTCaT AC RSP00821 Mean Expected Number 0.001 +strand -105 : -96 GCCACGTCaT AC RSP00862 Mean Expected Number 0.001 -strand +50 : +42 AGAAAGGAA AC RSP00864 Mean Expected Number 0.002 +strand -195 : -187 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand -193 : -185 AGAGAGAGA AC RSP00877 Mean Expected Number 0.001 -strand -115 : -123 CCCGCCAAA AC RSP00988 Mean Expected Number 0.001 -strand -113 : -124 tTCCCGCCAAAA AC RSP01034 Mean Expected Number 0.008 +strand -16 : -10 ACGTGGC AC RSP01034 Mean Expected Number 0.004 -strand -99 : -105 ACGTGGC AC RSP01275 Mean Expected Number 0.002 +strand -105 : -96 gCCACGTCAT AC RSP01280 Mean Expected Number 0.001 +strand -20 : -10 GGTGACGTGGC AC RSP01729 Mean Expected Number 0.000 +strand -20 : -9 GGTGACGTGGCA Totally 22 motifs of 16 different REs have been found Description of REs found 14. Group TF: E2F1 /AC: RSP00015//OS: Arabidopsis thaliana /GENE: AtCDC6/RE: E2F1-BE /TF: E2F1 ||Identical REs AC: RSP00165 RSP00298 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 813. Group TF: AtE2F /AC: RSP00877//OS: Arabidopsis thaliana /GENE: MCM3/RE: Site 2 E2F (D2) /TF: AtE2F 909. Group TF: E2F/DP /AC: RSP00988//OS: Zea mays /GENE: RBR3/RE: E2F/DP I /TF: E2F/DP 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 1537. Group TF: STF1/HY5 /AC: RSP01729//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: TAP46 |LOCUS: AT5G53000 |PROD: |complement(21502763..21505217) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +122 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.33 C - 0.23 1 tttacactac acccgccgca cctgatcttt gacttgatat ttttatacaa 51 ctgagtcggt ttttgacttt tgaggttgtg gacagatcta acggctaata 101 gaattcgagt tatctacttc acctgacgcg gcaaaatctc aaccgtccct 151 tataaagctc ttcgcggtta acattttctc tcctctgtct gtgtgtactc 201 GTGGTAAATT AGTCAGATTT CGATTTGGAA CCCTAAAAAA ATTCAAAAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.001 -strand -66 : -73 TTTGCCGC AC RSP00233 Mean Expected Number 0.009 +strand -88 : -79 TCTACtTCAC AC RSP00248 Mean Expected Number 0.003 -strand -69 : -78 GCCgCGTCAG AC RSP00521 Mean Expected Number 0.008 +strand -192 : -186 ACACCCG AC RSP00653 Mean Expected Number 0.006 +strand -27 : -17 TTtTCTCTCCT AC RSP01304 Mean Expected Number 0.003 +strand +27 : +36 gGAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: kinesin light chain-related |LOCUS: AT5G53080 |PROD: the same as GENE |21537739..21540492 |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +111 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.35 C - 0.18 1 gtataaaccg ggtttactcc ggtctttaat ttaaacaatg actcgaattt 51 tgcgaaaacc ggactcgtcc agaagacgga taaatttaat aagttttgga 101 gttttgtGCA ATtatctgaa agtcactcgc atatgtctat ttggctttat 151 ttaaaacatt tgggcctaaa ttgtaagatt cagttacttc tgagcctctg 201 ATAAAAATAC TTCATCAGCC ATATTGATAG ATTCCTTCCC GGCATTATTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00135 Mean Expected Number 0.002 -strand +11 : -1 AgTATTTTTATC AC RSP00405 Mean Expected Number 0.005 +strand -106 : -99 TTTGGAGT AC RSP00508 Mean Expected Number 0.001 -strand +10 : -2 GtATTTTTATCA Totally 3 motifs of 3 different REs have been found Description of REs found 131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 484. Group TF: SEF4 /AC: RSP00508//OS: Glycine max /GENE: beta-conglicinin alfa'/RE: SEF4 BS /TF: SEF4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SPDS3 |LOCUS: AT5G53120 |PROD: spermidine synthase |21551780..21555474 |SUPPORT | 11 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +875 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.32 C - 0.11 1 cagtttatat agtaacaaat tatatatata tatattcgtt attatttaaa 51 ccgtatcatt cagttgaacc gtatgtattt actcgtattt tatatattag 101 aaaagaaaat tgcataaACA ATacatttga ataataaaat aaataaaaaa 151 atagagaaaa aggttgtttt tagtctgtcg tggggatctt ctgagaaaac 201 AAATAGAGAC CTTTCTTTAA CACAGAGAAA GAGCCTGAGA GACAAGTGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01597 Mean Expected Number 0.000 +strand -21 : -11 GTGGGgATCTT AC RSP01641 Mean Expected Number 0.009 -strand +47 : +38 aCTTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 1418. Group RE: Box II* /AC: RSP01597//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box II* /TF: unknown 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: UBC10 |LOCUS: AT5G53300 |PROD: ubiquitin-conjugating enzyme 10 (UBC10) |complement(21649740..21651435) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +220 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.34 C - 0.20 1 gttagattag atgacttttt aagacgatgt cgtttcaatg caacttgatg 51 ttttaattaa gaagcgccgc gtcgtttcaa ggtccaccga ataataagag 101 ggttaaaagt agagtccact agtcaaagaa agtaaataat ccacacggta 151 tttattgtag acgtgagcac agagaataat tcgtattctt cgtctttcgt 201 CCACCACCAT CTCTATTTTC TTCCTTTCCC CTAAGTCTTG GTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.002 +strand -136 : -130 CGCCGCG Totally 1 motifs of 1 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G53330 |PROD: the same as GENE |21656443..21658189 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.26 C - 0.21 1 ctctggttcc ggcatgtgga tgataatgta tgggccttaa tggcccaatt 51 caaaaagaaa aaaaactgaa aacaaaaaca agatcaagtc aaagctggag 101 aaggatacac taatccacat atccaaacag atctgatctc cttgaagact 151 tcttcttcca atttccttct tattcttttc tgcaaattct tcttcaaact 201 AGAAAACAAA CACACAACAA TGGATTACGA TTACAGAAAC AAGTCTGGTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00333 Mean Expected Number 0.001 -strand -168 : -176 CCATACATT Totally 1 motifs of 1 different REs have been found Description of REs found 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nuclear movement family protein |LOCUS: AT5G53400 |PROD: the same as GENE |21678689..21680798 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +125 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.31 C - 0.19 1 caagttctca tagtatgctt agcctttgtt ggaggcttag tcatacgaca 51 ctaattaagg ttgggcctta ttgggctcta ctggtttggt tgtaaaaaaa 101 tttttggccc aggaaaaaac tttagcgaaa acccaaggga aatgaatgac 151 aaagagaaaa gcttactact tctcgaacct tctcgatttg gggacttttc 201 AATTTCCCTA TCAAAGTGAA TGACTTTCTT CTCCAAAATC GATTTCTGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 -strand -126 : -135 CCCAATAAGG AC RSP00440 Mean Expected Number 0.001 +strand -9 : -1 GGACTTTTC AC RSP01033 Mean Expected Number 0.006 +strand -178 : -169 CCTTTGTTGG AC RSP01214 Mean Expected Number 0.003 +strand -135 : -126 CCTTATTGGG Totally 4 motifs of 4 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G53420 |PROD: the same as GENE |21690756..21692959 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.12 T - 0.31 C - 0.18 1 ataaatatga aaaaataaac tattgaatat atacacaaca aaagacaatt 51 tctctattat tatgttgaga aaaaaatctt tttagattaa ataatagtaa 101 tggctttatg ggctttttac tctatcgtgt ccacagtacc cccaactaaa 151 caaaaagaaa ttgttaaaga gctctctctc tctctctttc ataaaaaggc 201 AAGAGGAGAG CCAAGTACCA AACTTTTTCC TTCAGGGTTT TCCTCTCAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00080 Mean Expected Number 0.005 +strand -14 : +2 TTTCaTAAAAAGGCAA AC RSP00080 Mean Expected Number 0.005 -strand +2 : -14 TTGCCTTTTTAtGAAA AC RSP00864 Mean Expected Number 0.001 -strand -14 : -22 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -16 : -24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -18 : -26 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand -20 : -28 AGAGAGAGA Totally 6 motifs of 2 different REs have been found Description of REs found 79. Group TF: MADS-domain AGAMOUS BF /AC: RSP00080//OS: Arabidopsis thaliana /GENE: STE2; other genes/RE: AGAMOUS MADS BS /TF: MADS-domain AGAMOUS BF 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ACBP1 |LOCUS: AT5G53470 |PROD: acyl-CoA binding protein, putative / ACBP |21727577..21729836 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +146 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.27 C - 0.20 1 cttcattttt tctcggtccc aaccagttgg tagatgaaaa gcggtccaat 51 taacaaacgg attcgtcagt tgtctctcgt cgcaaccatt caatcctacg 101 tgtaattcct cagttgtctc tggtcttcaa caaaagacaa gcccacaaag 151 agaaaacaaa aaaaaagtaa agaaaaagaa aattgtgaag cggtgaaaac 201 AAGAGTTCCA AAAAGGTGGC TCCTTTTTGT TTCTGGAGAT GCGTTATTGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.005 +strand -39 : -28 AAAAAGTAAAgA AC RSP00421 Mean Expected Number 0.007 -strand -184 : -190 ACCGAGA AC RSP01017 Mean Expected Number 0.004 -strand +34 : +27 AGAAACAA AC RSP01260 Mean Expected Number 0.002 +strand -105 : -98 CTACGTGT Totally 4 motifs of 4 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: importin beta-2, putative |LOCUS: AT5G53480 |PROD: the same as GENE |21730592..21735008 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +650 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.09 T - 0.44 C - 0.19 1 aaacctaaat atacaattga gtacaaatat atataagttt ggaaaacaat 51 ttcaaaatta atagatttac ataatttgtg ttcaaaacag tttttttatt 101 tgtttatata aatatttggt taaaagttta ataataaaat ttaaagtcca 151 tcttcacatc cgattcttct cttctcttct ctctctctct tccctttttc 201 GCTGGAACTG ATTTTTTTCT TCTCTCTCTC TCTCTCTCTT CCTTCTGGGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.007 +strand -70 : -62 ATAATAAAA AC RSP00864 Mean Expected Number 0.005 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +37 : +29 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +35 : +27 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +33 : +25 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +31 : +23 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand +29 : +21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -11 : -19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -13 : -21 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -15 : -23 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand +38 : +22 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand +36 : +20 GAGAGAGAGAGAGAGAA Totally 12 motifs of 3 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: vacuolar protein sorting-associated protein 26 |LOCUS: AT5G53530 |PROD: the same as GENE |complement(21763269..21765790) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +408 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.36 C - 0.17 1 atttaatcac ttcggatagg aaacgaccat acatttgaat ctgggtataa 51 aaacaccgca tgcaaatagt tcaggttgat tttagccgtt ttcctgttta 101 tgTCAATggt attatctggg ctttgatcgg tacttataat ataaatgggc 151 ttgtgtatca agttgataca aaagaaaaga cttttttttt tcgtgactct 201 GTTGATCGTC TCGAACCCAA CTGTCAGAAT CTTCGTCGAT TTGATCGATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00333 Mean Expected Number 0.001 +strand -174 : -166 CCATACATT AC RSP00985 Mean Expected Number 0.006 -strand +22 : +13 AGTTgGGTTC AC RSP01031 Mean Expected Number 0.008 +strand +26 : +33 AGAATCTT Totally 3 motifs of 3 different REs have been found Description of REs found 319. Group TF: S2F /AC: RSP00333//OS: Spinacia oleracea /GENE: RPL21/RE: S2 /TF: S2F 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATB5-A |LOCUS: AT5G53560 |PROD: cytochrome b5 isoform 1 |21776637..21777804 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +217 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.31 C - 0.21 1 ccaaaataaa atctcgtcaa aaatggaaac caaattttaa tttgatttgc 51 acaaagccca atttgatttg tttaaagtca aagcccaact tgaccaaaac 101 tacccctgct catccaaacc ctaagcaaaa tatcgagggt agtttcgtat 151 tttgtttata ttgaacacaa ttaagtaggt gaggaacctc tatttcttcc 201 GTCTTCTGCT GATTTCTGAG CTTCGGAGCT ATCGAAAATT CTGAATCTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand -77 : -85 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -85 : -77 AAACCCTAA AC RSP01303 Mean Expected Number 0.006 +strand -86 : -77 cAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G53650 |PROD: the same as GENE |21808403..21809666 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +88 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.32 C - 0.18 1 cttaggtaat acgaaagagg tcaatgaagg tttcttacat ttttttttag 51 aggaccagta caatcataat gacgccgttt ctagtaaata aacgccgtgg 101 tttcactgct ctacgtaATT GGagtattga aaaccacgtc gttttgatca 151 gcggactagt ctctcaagct attctaagaa acgaggtcgt tttgattcgc 201 GGTTGGTCTT TCTCTCTCTC TAAAGCAGAA AATTCGTAGA ATCGGAGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +21 : +13 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +19 : +11 AGAGAGAGA AC RSP00986 Mean Expected Number 0.001 +strand -67 : -60 CCACGTCG AC RSP01138 Mean Expected Number 0.000 -strand -61 : -72 GACGTGGTTTTC AC RSP01139 Mean Expected Number 0.001 -strand -62 : -70 ACGTGGTTT AC RSP01636 Mean Expected Number 0.001 +strand +18 : +28 CTCTAAAGCAG Totally 6 motifs of 5 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 907. Group RE: G-box /Group TF: GBP /AC: RSP00986//OS: Antirrhinum majus /GENE: gPAL2/RE: G-box /TF: GBP 1056. Group RE: Region C /AC: RSP01138//OS: Zea mays /GENE: Adh1/RE: Region C /TF: unknown 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown 1456. Group RE: TERE /AC: RSP01636//OS: Arabidopsis thaliana /GENE: XCP2/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G53800 |PROD: the same as GENE |21865361..21867337 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.33 C - 0.19 1 actatgactt gtataaaaag aaacaaataa acatcaacag taacatatat 51 atttactgat gagttacccg atcttcacct gcaaatgaac aggcctacta 101 gtcataacta atgggctttc taaaccacaa tattcttacg gcCCAATtaa 151 atttaaatta atattattat tcgcagtttc gcgaggcttt tgtttttttt 201 ATCACGGCCT AGTTTAGTTA AGCTCTCGCC GGTGATTTAG CGGAGATGGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00747 Mean Expected Number 0.001 -strand -140 : -151 CATCAGTAAATA AC RSP01014 Mean Expected Number 0.008 +strand -119 : -110 CAAATGAAcA AC RSP01017 Mean Expected Number 0.008 +strand -182 : -175 AGAAACAA Totally 3 motifs of 3 different REs have been found Description of REs found 709. Group TF: GT-1 /AC: RSP00747//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 7 /TF: GT-1 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: O-methyltransferase, putative |LOCUS: AT5G53810 |PROD: the same as GENE |complement(21867405..21870237) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +249 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.40 C - 0.16 1 tgtgctaata ttagcatctt cacttcttgt aattcttttt gcttttagga 51 aaatgatttt ctttgaatcg acatctacta tattatgtaa gaatacttag 101 ttttgatgtt ttctaacgat tagggtgcgg tcgattttgt tcacctagtc 151 tctacaattg atgttttgct aatatgttta cctaaatata actttaatga 201 AACTGGCTAA TTGAACGAAC ATGTTCTTGC ATGGCCACCA TAACAAATAA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: EMB2737 |LOCUS: AT5G53860 |PROD: expressed protein |21882494..21886068 |SUPPORT | 11 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.29 C - 0.22 1 tttcaatatt ttttttctat accacggcgc ttcctccgcc gtatcttcgc 51 cgtcatcgcc gcaaatatag aaaagacgct cgatttgggg atttctcaaa 101 ttaaactcct tgtcgttttt cttacaaaga aacgacacgt agtctaatta 151 gaaggtacat gtttggtaac aaagaataag tctaatccaa aaccgagata 201 AGAATAGTGT AAAAACCACT CTTGAAACCT CCTCTTCAAA AATACCAGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.005 +strand -67 : -58 GACACGTAGt AC RSP00070 Mean Expected Number 0.003 -strand -60 : -67 TACGTGTC AC RSP01035 Mean Expected Number 0.009 -strand -61 : -67 ACGTGTC AC RSP01104 Mean Expected Number 0.006 +strand +25 : +32 AAACCTCC AC RSP01260 Mean Expected Number 0.003 -strand -59 : -66 CTACGTGT Totally 5 motifs of 5 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G53880 |PROD: the same as GENE |complement(21890020..21890529) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +108 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.19 T - 0.26 C - 0.12 1 tcgtgtgtct tttgtgtata tgcggtttac aaagaaacat gattgaaaat 51 aaaaaaagaa ttggttggag aatgatacta aaattcaatg gagtgggacc 101 aaatgaaagc atcattatta aacgagaaga aaaagacaga ATTGTtagag 151 aaatgtcaaa aaagcacagt aataagtaac ccaaaaaaac aaacccaatc 201 AATTCTCTAC TTTCATTAAA GCTTAGTAAG CAAATGTGTT ATGTGTGAGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.009 +strand -6 : +1 CCAATCA AC RSP01015 Mean Expected Number 0.002 +strand -101 : -92 CAAATGAAAG AC RSP01082 Mean Expected Number 0.000 -strand -128 : -139 AtTCTCCAACCA AC RSP01250 Mean Expected Number 0.003 +strand -121 : -112 AAAATTCAAT Totally 4 motifs of 4 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1000. Group TF: DcMYB1 /AC: RSP01082//OS: Daucus carota /GENE: DcPAL1/RE: box-L4 /TF: DcMYB1 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: yippee family protein |LOCUS: AT5G53940 |PROD: the same as GENE |complement(21914227..21915836) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +21 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.22 T - 0.27 C - 0.14 1 gatgcaaatt taagcaaacg tttctattgg gaacatcatc agataatata 51 tacttgtgaa agggatatca aaaaacaatc attagttgct tttgttgact 101 tttcttggtg accagttttg aaatgggccc agttaaggcc caacatatca 151 cttatacggc ctcttattag ttcgtaaaga aagaaacaga gagaatagag 201 AGATAGAACA GTGAAGAAGA AATGGGAAGG ATATTCACGG TGGAGCTTGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.010 +strand -23 : -15 AGAAAGAAA AC RSP01209 Mean Expected Number 0.003 +strand -102 : -93 CTTTTCTTGG Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: band 7 family protein |LOCUS: AT5G54100 |PROD: the same as GENE |complement(21971013..21973768) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +42 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.36 C - 0.18 1 ggtttattca tcaagtctta gggtttttat tagcctatac aaattcgtga 51 taagcaagaa aaacaaaaac ctctgtttga ctcttcccca agtttttttt 101 taaaacctct tcttcaagta aattttgatt attatataag tcaaccgatt 151 aaactatagt tcaaaaaaaa aaagatttaa gaggtttttc tctggatttc 201 CTCTTCTCCA CGTTCTCAGA GTTAGTTACA CAGCTTTCAA CGATGAATCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00054 Mean Expected Number 0.010 -strand -146 : -152 GCTTATC AC RSP00279 Mean Expected Number 0.001 +strand -183 : -175 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 -strand -175 : -183 AAACCCTAA AC RSP01233 Mean Expected Number 0.009 +strand -148 : -142 AGCAAGA AC RSP01303 Mean Expected Number 0.002 -strand -174 : -183 aAAACCCTAA AC RSP01734 Mean Expected Number 0.008 +strand +7 : +13 TCCACGT Totally 6 motifs of 6 different REs have been found Description of REs found 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1138. Group RE: PLE-79 /AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-79 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G54145 |PROD: the same as GENE |21989691..21990309 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.32 C - 0.14 1 agaaatccaa cctgatcttt ttttaatact tttacatcta atgtacactg 51 tgcgtgagaa gcgggtaatt tttaaaaaag gagagataaa aaaacaaaag 101 atatataata atgtaaagaa aaaatataca tattatagta ttgattATTG 151 Aagtgttaaa tggtcgtcta tatattgaca aagaagtctc tcacattctc 201 ACACTACTCA AATCTTCATC GCTTAGATCT TTCTTTAAAA ACAAATCAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 -strand -165 : -172 TGTAAAAG AC RSP00127 Mean Expected Number 0.004 +strand -141 : -136 AGCGGG AC RSP00653 Mean Expected Number 0.002 -strand -112 : -122 TTaTCTCTCCT AC RSP00756 Mean Expected Number 0.002 +strand -3 : +5 CTCACACT Totally 4 motifs of 4 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 125. Group RE: BS1 /AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/RE: BS1 /TF: unknown 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G54170 |PROD: the same as GENE |complement(22002104..22004280) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.10 T - 0.40 C - 0.25 1 actactactt agcgtctacg aataataacc cctttaccat aagtccatag 51 atttatctct cttcttctca ccactcatgt ccctttcttt gtcttcttcc 101 tctcaccgcc ttcaaagttt tcatctttat ccaaataaaa aaatcgtttc 151 ttttttagtt tcttcttaac atatttaaag gcgtaccctt tctcttactt 201 ATCCTCTGCA AAGTTATGGC TTTGCTTGAG AGTATAATAT TAGGGCTAAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00301 Mean Expected Number 0.004 +strand +7 : +13 TGCAAAG AC RSP00442 Mean Expected Number 0.003 -strand +16 : +7 TAACTTTGCA AC RSP01094 Mean Expected Number 0.007 -strand -64 : -75 TAtTTGGATAAA AC RSP01234 Mean Expected Number 0.010 -strand +29 : +23 TCAAGCA Totally 4 motifs of 4 different REs have been found Description of REs found 289. Group RE: PROL box /AC: RSP00301//OS: Oryza sativa /GENE: GluB-1/RE: PROL box /TF: unknown ||Identical REs AC: RSP00882 422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G54180 |PROD: the same as GENE |22005732..22007454 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +38 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.17 T - 0.37 C - 0.15 1 tttctatcgt aatgttaaga tgataggtac tattgcattt ttggtagatg 51 aagggtaaat tatataagat taaaagtttg aggattcttt tgcaattttc 101 ccatattaga aacgaaacat gttctcttct caggcCCAAT aacatttttt 151 gttaaatctt tgattattaa agttaaccca tcttggaatc aaacacgacc 201 GTTAAAATCA GAAACCTTGG TTTTGGATAT AGCCAGCCAT GGTGATCTTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.007 +strand -104 : -89 TTTCCcATATTAGAAA AC RSP00085 Mean Expected Number 0.007 -strand -89 : -104 TTTCTAATATgGGAAA AC RSP00716 Mean Expected Number 0.003 -strand +25 : +17 CAAAACCAA AC RSP00961 Mean Expected Number 0.005 -strand -107 : -114 TGCAAAAG Totally 4 motifs of 3 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cytochrome c biogenesis protein family |LOCUS: AT5G54290 |PROD: the same as GENE |22068263..22071604 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.31 C - 0.16 1 caaccacaat tatgctaaag attgttgctg atcgattagc cctactattc 51 taaatctttg tatatacaca atttgttggt tatcagattg gatccatagt 101 gactttgtac actCCAATca ttaatataag ttaatgggcc tttataggct 151 ttaaaaaatc agcccattag tatatatcat taaataataa tggaaaatta 201 GAAAAGACTG TGAAGCGAGA GGACCGTTAA GACGACGGAC GCTTATCTGG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00628 Mean Expected Number 0.009 -strand -175 : -182 AACAATCT Totally 1 motifs of 1 different REs have been found Description of REs found 604. Group TF: CCA1 /AC: RSP00628//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS1 /TF: CCA1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AHL |LOCUS: AT5G54390 |PROD: inositol monophosphatase family protein |22103224..22105243 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +135 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.16 T - 0.34 C - 0.06 1 ttgttattaa cttttatata tttatttatt attaattttc acaaaaagtt 51 gttattaagg agaaaagtgt gttgttgttt tattttattt tattttttaa 101 tccagggaat aaataattta actataacca ctttaagaaa atgtgacaga 151 gccaccaaaa agagcataaa aagtaaaatt aaaataataa ttatgatttt 201 GTATTAAAAG AAAGAAAGAA AAAAAAAGGA GAGGAGAAGA AGCAGTGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00187 Mean Expected Number 0.002 +strand -49 : -45 CCACC AC RSP00444 Mean Expected Number 0.001 +strand +8 : +21 AAGAAAGAAAGAAA AC RSP00677 Mean Expected Number 0.009 +strand +42 : +47 GCAGTG AC RSP00874 Mean Expected Number 0.003 -strand -63 : -73 TCTTAAAGTGG AC RSP01136 Mean Expected Number 0.009 -strand -53 : -59 TGTCACA AC RSP01209 Mean Expected Number 0.004 -strand -37 : -46 CTCTTTTTGG Totally 6 motifs of 6 different REs have been found Description of REs found 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 646. Group RE: Box 1 /AC: RSP00677//OS: Hordeum vulgare /GENE: Amy32b/RE: Box 1 /TF: unknown 810. Group TF: Dof3 /AC: RSP00874//OS: Zea mays /GENE: Synthetic oligonucleotids/RE: Dof3 BSopt /TF: Dof3 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: universal stress protein (USP) family protein |LOCUS: AT5G54430 |PROD: the same as GENE |complement(22114430..22116984) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.28 C - 0.24 1 aggaagtgga ggaaatcacc gacgccggag atctagtgaa tcgtcttctt 51 caaaactatg gcgctcagat ttgatcctga ccgttggatc actccttcta 101 ttaactacat ctatattaga atgcttgtcg tctttgtata taaataacgg 151 catgcagtct aatgttctat taaaaaaaca aaaacaacgc ttctttcttc 201 TCCGTTAAGA GAAACCTCCC TCACTCCCAC TTTCCGACGA ACAAAAACAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.006 +strand -77 : -68 CTTGTCGTCt AC RSP01104 Mean Expected Number 0.008 +strand +12 : +19 AAACCTCC Totally 2 motifs of 2 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 1022. Group RE: AC2 /AC: RSP01104//OS: Spinacia oleracea /GENE: rps22/RE: AC2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: RNA recognition motif (RRM)-containing protein |LOCUS: AT5G54580 |PROD: the same as GENE |22188445..22190203 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.41 C - 0.16 1 tgccaatgaa aaaaaatcga aaattggagc tgcacattgg cgaattccat 51 taattacgaa tatcagaatt gtaaagtttc tatcactagt ccatccattc 101 cgaaattttg aagtaataca agggtatatc cgtcatttta tgtcagtatt 151 tttttttttt aggtcatctt ctcactctag taaattactc gttttcgtat 201 CAATCGATTT TGTTTGTTCT CTGCTTTTTT GGTTTAGGGT TTTAGCTTTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 +strand +34 : +42 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 -strand +42 : +34 AAACCCTAA AC RSP00495 Mean Expected Number 0.008 +strand -131 : -124 TGTAAAGT AC RSP01303 Mean Expected Number 0.005 -strand +43 : +34 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 50S ribosomal protein L24, chloroplast (CL24) |LOCUS: AT5G54600 |PROD: the same as GENE |22200204..22201793 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +68 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.20 T - 0.33 C - 0.13 1 tttttagacg ctagattgtc tatatttgtg aatgaaaatt tgttctttgt 51 tttttcgtgt taaaacgagt tcaaaactgg agaaccatat tatatatttg 101 ggctatgaaa agaattgaat tcaaggcCCA ATtaaaacct agcctagccc 151 attaaggttt agtgataata cagtgtcgtt taatcgttta tccaattttt 201 ATCGTCATCT GTGGAACGGA TAGGACGAAG GAAAAAGAAG AAGAGTGAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.004 +strand -65 : -56 AACCTAgCCT AC RSP00379 Mean Expected Number 0.002 +strand +17 : +26 CGGATAGGaC AC RSP00894 Mean Expected Number 0.009 +strand -83 : -76 AATTCAAG AC RSP01094 Mean Expected Number 0.002 -strand -3 : -14 aAATTGGATAAA Totally 4 motifs of 4 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: heat shock protein-related |LOCUS: AT5G54660 |PROD: the same as GENE |22221131..22222378 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.05 T - 0.37 C - 0.22 1 tctttaatct actttgcacc tatcatgtca atctataagt atatatattt 51 tacatatgct gcaaatatac ctccacaaaa aaacaaaaga ataaacattc 101 tttttatatc cccattaaaa tcaaaatatt tgtatcattt tttttattag 151 ctatctcaaa attatactat aagaacaaac cttgattcca aaactcacac 201 ACACAATCAA CCACTTTCCT TTTTTCATTC GTCTCAATTT CTCTCATGAC 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT5G54680 |PROD: the same as GENE |22234286..22236830 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +210 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.31 C - 0.16 1 gtttgttgta aaatgtattg atatttgatt taatatatat atgatgatgt 51 aacacataaa ataaaataaa aacacgtaaa atgaattaaa aataaactaa 101 caaataaaat aaaaaccctt ggtatgatgg gccttggaaa gcccaaaaaa 151 aaaggaagag tgcgcgtgaa aaccactcta atttctctgg attccaagat 201 TCCCCAATTC GTCTCCTCCA ACAGTTTTCT TCTTCTCTTC TTCTTTGGGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00750 Mean Expected Number 0.006 +strand -198 : -187 TTgTTGTAAAAT AC RSP01261 Mean Expected Number 0.006 -strand -122 : -129 TTACGTGT AC RSP01559 Mean Expected Number 0.007 -strand -34 : -39 ACGCGC AC RSP01725 Mean Expected Number 0.001 +strand -131 : -120 AaACACGTAAAA Totally 4 motifs of 4 different REs have been found Description of REs found 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 1163. Group TF: GBF1 /AC: RSP01261//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS8 /TF: GBF1 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1533. Group TF: STF1/HY5 /AC: RSP01725//OS: Arabidopsis thaliana /GENE: NAC1 (At1g56010)/RE: G/A-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transport protein particle (TRAPP) component Bet3 |LOCUS: AT5G54750 |PROD: the same as GENE |22258710..22260947 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +596 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.39 C - 0.16 1 ttgctaacaa atatttttaa agattttaat ggaaattgtt aacattttat 51 acaaggcttt tatataatca aatgaaacta tagattttgg taacacataa 101 ttaatctgtt gtgctctctc ttttatttta ctatgggaaa ggtCCAATgg 151 gcttaggccc aattatttaa acaaaaaaag attctaactt tcttctaatg 201 GAAAAGAAAA TTTGCGATCA AGCAATTACT CTCTCTCTCT CTCTTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.005 +strand -192 : -180 AAaTATTTTTAAA AC RSP00861 Mean Expected Number 0.003 -strand +48 : +40 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +44 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +42 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +40 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +38 : +30 AGAGAGAGA AC RSP01015 Mean Expected Number 0.007 +strand -132 : -123 CAAATGAAAc AC RSP01091 Mean Expected Number 0.010 +strand -139 : -129 ATAtAATCAAA AC RSP01283 Mean Expected Number 0.000 -strand +43 : +27 GAGAGAGAGAGAGAGtA Totally 9 motifs of 6 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: glucose-6-phosphate/phosphate translocator |LOCUS: AT5G54800 |PROD: the same as GENE |22278497..22281111 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.39 C - 0.16 1 aaaaagtacc gaatttgttt tattttgtca acaagcttaa cgaattaaaa 51 aataaattaa tagtgttgtt ctctcccagt atatacgcgc atatatacac 101 acttatatac tcaaaagttt ttatataaat ttttttctct ctataaaata 151 taaaccattg taaaacctaa attacttaaa aagatctctc tcatttgaat 201 TCTTCTTATT GTTTAGATTC CAGGTCAAAC TGTGATCCAT TATCTTTGCT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.006 +strand +23 : +29 GGTCAAA AC RSP01559 Mean Expected Number 0.003 +strand -116 : -111 ACGCGC Totally 2 motifs of 2 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DTW domain-containing protein |LOCUS: AT5G54880 |PROD: the same as GENE |22309112..22310526 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.37 C - 0.14 1 ctgtttgtat ataactatat atatatcatt caggtttgta gcaactgctc 51 atcatgtaaa ctgtgtttgg atatgataca cacaaataga aattacaagt 101 ttcatctttt ggttatgttt cgtcttccgg tttagtttgg tttatctgga 151 ttaaaccggt ctcatcttca tcgtaaagaa agaaagtaga agcaaagctt 201 GAAGCTTTTG GATTTCTAAT GTGTGTGAAT CGTGATGTTG TCATCAGGAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.001 +strand -24 : -16 AGAAAGAAA Totally 1 motifs of 1 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G54930 |PROD: the same as GENE |complement(22322959..22324787) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +722 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.29 C - 0.16 1 taaaaaagaa gaagtaactg atcacagaag cataataaaa aagcaagaag 51 gaaatatctt taagcaaaga tattatctaa aagcccaaac aaaaacaaac 101 cattaattta acaaaacaga gaaagtgtta taaccaaaca aatccACAAT 151 tttttttgct gtaattaaaa tatttttggc cctctcaaat gtttttgtct 201 TTTTTCGCAT TAGCCCTTTA TTGACTCGTT GTTAAATGCC ACAAGAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.005 -strand +5 : -5 AAAAAAGAcA AC RSP01093 Mean Expected Number 0.004 +strand -142 : -132 TtTAAGCAAAG Totally 2 motifs of 2 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L30 family protein |LOCUS: AT5G55140 |PROD: the same as GENE |22398262..22399254 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +334 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.27 C - 0.21 1 caagattaat aaatctaaag attgatgtaa aaaaaatgaa accaatctag 51 taatttttga acaaattata aaaaggtaaa ggagccaata attgggccca 101 gataaagccc aaataattaa gctaatctac aaaacgctgt cgtttaacca 151 ttgttccgct aaaagcttaa aacccttaaa cgcgaatctc aaagattttc 201 CGAGCTCTGT TCGCCGTCTT GACTACACTC GTCGACGATC TCTTTCACCG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -56 : -69 AAACGACAgCGTTT AC RSP00595 Mean Expected Number 0.003 -strand -79 : -87 GCTTAATTA AC RSP00734 Mean Expected Number 0.006 +strand -71 : -64 CAAAACGC AC RSP00933 Mean Expected Number 0.006 -strand -129 : -141 TTTATAATTTgTT AC RSP01060 Mean Expected Number 0.005 +strand -115 : -107 CAATAATTG AC RSP01060 Mean Expected Number 0.005 -strand -107 : -115 CAATTATTG AC RSP01077 Mean Expected Number 0.003 +strand -115 : -107 CAATAATTG AC RSP01499 Mean Expected Number 0.003 +strand +10 : +19 TTCgCCGTCT AC RSP01757 Mean Expected Number 0.002 -strand +23 : +16 GTCAAGAC Totally 9 motifs of 8 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 571. Group RE: Box II EE1 /AC: RSP00595//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: Box II EE1 /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SUM2 |LOCUS: AT5G55160 |PROD: small ubiquitin-like modifier 2 (SUMO) |complement(22400795..22402151) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +153 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.30 C - 0.22 1 atctactcga aagctgagat tttcacattt taaaattctt gggtagacac 51 agaagtaacc agcccatttg agcccattaa gaatgctaaa acgacatcat 101 tttaagttag agattatact cactcacagc cgtcgaatga tatagatcaa 151 tgattatgaa ccgttagata aacaagaatc cgatgcgacc aaagatagtg 201 GTTTCAGTCT TTTTTATTCT CTGCCGAGTC TCTCTCTCTC CCTCAAACCC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 -strand +39 : +31 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +37 : +29 AGAGAGAGA AC RSP00865 Mean Expected Number 0.001 -strand +41 : +33 GGAGAGAGA AC RSP01497 Mean Expected Number 0.002 +strand -72 : -63 GCCGTCGaAT Totally 4 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: co-chaperone grpE protein, putative |LOCUS: AT5G55200 |PROD: the same as GENE |22411860..22413777 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +71 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.37 C - 0.19 1 gatactgatc tctatcaaaa cagattatgg atatcatact agagtacatt 51 aaaaatttgc ttctaagatt ttgagttctt ggagtcatta acgcatcgct 101 aagggtattt tcgtaacttt aaataacccc aaataatatt ttgcttcctc 151 cccaagaacc tttttgcctc tttctacttc cgtcggccgg attcagagtc 201 ATAAATAAAT ATATAAAAAA AAGTTTCGAT TTTTGCTTTT CTTCTTCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.008 -strand -14 : -19 GCCGAC AC RSP00447 Mean Expected Number 0.010 -strand +42 : +33 AGaAAAGCAA AC RSP01463 Mean Expected Number 0.003 -strand +18 : +6 tTTTATATATTTA Totally 3 motifs of 3 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G55250 |PROD: the same as GENE |complement(22424775..22428170) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.37 C - 0.18 1 ctataacatg tgacacaagt acaccatata attgtatttt gttttttggg 51 aaacaaacat aatgatgcgt tgtttttgca tgaataatca gtatatacaa 101 aatatgtacG CAATggcaca tttaataata tgtttcccca ttcaactaaa 151 ttcatacatt tatcatttca tctctttgtc ctcttttcct atatatatgt 201 GTCGTCTCCT CGAGCTTGTC TCATTCACAA AAAGAAGGTG TAGAGAAAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00872 Mean Expected Number 0.008 -strand -184 : -193 TGTGTcACAT Totally 1 motifs of 1 different REs have been found Description of REs found 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G55340 |PROD: the same as GENE |complement(22457077..22458231) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.29 C - 0.22 1 atttactact caacactcca caactaccca atgactcaat attaatgctc 51 ttctttgtag cctttgatct acctctcacc tactttatgt aattgaggtt 101 gcctctgtaA CAATgtaact atagtttttc ccatttcaag acacataaaa 151 aaatagccaa gtaataagtt ataacctcgg tgattgccaa aaacaacaac 201 ACAAACAAAG ATCTGAGAGA TGGATGAAGA ACTCAAGAAC TTGATCAAAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00286 Mean Expected Number 0.003 +strand -127 : -117 TCTCACCTACt AC RSP00416 Mean Expected Number 0.006 -strand +26 : +20 CATCCAT Totally 2 motifs of 2 different REs have been found Description of REs found 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G55450 |PROD: the same as GENE |22484716..22485489 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +70 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.27 C - 0.21 1 caagataaaa cgaccaaaag ccattagtca cgcaaaagga acaagctctg 51 taatttacca actggagact aaaagtctac cacatttgtc tgtttgttac 101 aatttaactc aaaagacgac cgacttggct aaaaataccc gtgagtctac 151 cttgtactag ctctcacttc tcattaatct ttccttgtat aataagctca 201 TTACATGTAA GAGTTTCACA TATCACAACA GAGTTGAGTG AGAAAGAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.009 -strand -103 : -109 AACAAAC Totally 1 motifs of 1 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G55710 |PROD: the same as GENE |complement(22572104..22572876) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +26 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.33 C - 0.14 1 tttgatattt aaatatacac aaaaaacaaa gacaataaca gaggctattt 51 aattgttacc ttacttcaaa taactacgta ccgttttatc atattagaaa 101 gataagaaga cgacACAATg ttttaagcta aacttttaaa acagagtgga 151 gtttagttta ttatcctctc atcatgtgtt aagcagtctt tcagttttgt 201 GTGAAGTGAA ACAAAAACAG AGCAAAATGG CAATAATATC TCAGTTTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00227 Mean Expected Number 0.005 +strand -102 : -94 AAGATAAGA AC RSP00680 Mean Expected Number 0.008 +strand -165 : -156 TAACAGAGgC AC RSP01776 Mean Expected Number 0.010 -strand -145 : -155 ACAATTAAAtA Totally 3 motifs of 3 different REs have been found Description of REs found 220. Group TF: GT-1 /AC: RSP00227//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX III* /TF: GT-1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FLA1 |LOCUS: AT5G55730 |PROD: fasciclin-like arabinogalactan-protein (FLA1) |complement(22575374..22577687) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +69 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.23 C - 0.26 1 gtagctaggt ggaacccgtg gaaggctgga aagaagagca tttgacatgg 51 tcacaaaact tgcaaaagcc cataagctta aattcgcaat aaatacaata 101 aataatgtca tcACAATaaa taaatacaat ggcacaatcg taattacaac 151 caaaaaccac gtccattaaa aactaaacac caccttcttc ttcatcccct 201 CACTTTAAGC TCTTCTTCAC TCACACTCTC TCAAAAATCA CCAAACCAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00187 Mean Expected Number 0.010 -strand -189 : -193 CCACC AC RSP00756 Mean Expected Number 0.009 +strand +20 : +27 CTCACACT AC RSP00961 Mean Expected Number 0.005 +strand -140 : -133 TGCAAAAG AC RSP01138 Mean Expected Number 0.001 -strand -38 : -49 GACGTGGTTTTT AC RSP01139 Mean Expected Number 0.003 -strand -39 : -47 ACGTGGTTT Totally 5 motifs of 5 different REs have been found Description of REs found 181. Group RE: CCACC box /AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CCACC box /TF: unknown 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 1056. Group RE: Region C /AC: RSP01138//OS: Zea mays /GENE: Adh1/RE: Region C /TF: unknown 1057. Group RE: Region B1 /AC: RSP01139//OS: Zea mays /GENE: Adh1/RE: Region B1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nucleolar protein, putative |LOCUS: AT5G55920 |PROD: the same as GENE |complement(22662709..22666673) |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.31 C - 0.20 1 tggaacaaaa ttttaaagta tattgcgtgt tcacactagt ttgaaagttg 51 tgtgcgtatg aataaacata tcgaataatc aataacaagg caccatatag 101 ttattgggct caatttgttt taaATTGGgc cgataattat ttaggcaaaa 151 gcccaataat agacaccagt caaatatacc tttgtgtact ccaacaatca 201 TCATCTTCTA CTTCTTCTCT TAAACCCTGG CCGCGCGAGA AAACCCTAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand +49 : +41 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand +41 : +49 AAACCCTAA AC RSP00709 Mean Expected Number 0.008 +strand -67 : -59 TAATTATTT AC RSP01303 Mean Expected Number 0.006 +strand +40 : +49 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 675. Group RE: I-box /AC: RSP00709//OS: Pisum sativum /GENE: TOP2/RE: I-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transporter-related |LOCUS: AT5G55950 |PROD: the same as GENE |complement(22675341..22677659) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +180 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.10 T - 0.34 C - 0.20 1 acaatttcct caagagaaac aaaaaaaatc cctgaaaaat tcctcaaaat 51 tttcttaatt ttcgagataa attgatttaa aataaaataa aacagaaaga 101 tacGCAATga aactgcgttt tcaagcaaac tgctaaattt ctatcttttt 151 ttctctctct ctctctctct ataagggctc tgcttcttgt acaacagccg 201 AAACAATTAT ACCATGACAT TAAAATCCAG ATTTTTTTCA GTCATTTTCG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 -strand -31 : -39 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -33 : -41 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -35 : -43 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -37 : -45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -39 : -47 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -41 : -49 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 -strand -32 : -48 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 -strand -34 : -50 GAGAGAGAGAGAGAGAA AC RSP01283 Mean Expected Number 0.000 -strand -36 : -52 GAGAGAGAGAGAGAaAA Totally 9 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CBL2 |LOCUS: AT5G55990 |PROD: calcineurin B-like protein 2 (CBL2) |22688678..22691081 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +737 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.37 C - 0.18 1 ttcaaattta tgtccggttc aattcagctc gagttttact taaccggaac 51 gaaaatcaaa tcgaaccgta ttttgaagaa taaaacgacg acgatttgag 101 cagatttttc aggatttaat ttgtaataat gcaaaaagAT TGAgtttttg 151 ttgtttgttg agatatttaa aaagattctt caggttttaa tttgttttcc 201 AACTCTCTCC TCTGCTTTAC AACAAATCGT CTCCGTCTTC CTCGCTCAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00885 Mean Expected Number 0.000 +strand +21 : +33 AACAAATCGTCTC AC RSP01031 Mean Expected Number 0.009 -strand -22 : -29 AGAATCTT AC RSP01167 Mean Expected Number 0.005 -strand -32 : -40 TAAATATCT Totally 3 motifs of 3 different REs have been found Description of REs found 818. Group RE: AACA motif /AC: RSP00885//OS: Zea mays /GENE: gamma-27kDa zein/RE: AACA motif /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pyruvate kinase, putative |LOCUS: AT5G56350 |PROD: the same as GENE |complement(22837232..22839992) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +237 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.42 G - 0.12 T - 0.29 C - 0.17 1 aacataaaca cttaaatgag atatcattat aagatatttt atatttggaa 51 aaaaacgtgg cccgacaata gatcgagaag acataaaaag gtaaacgaaa 101 acgaatatta ataaACAATg tgcgtcactc cttaattatt caaagaaaat 151 taaaccggtg tgaaccaatc agtaaacata tggtcttttg ttgaccaaat 201 CTAAACCAAT AACCTTCAAT TTCATTTCTC ATTTTTTACC TCAAAAGTCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00819 Mean Expected Number 0.001 -strand -140 : -149 GCCACGTtTT AC RSP01003 Mean Expected Number 0.010 -strand -62 : -71 AtAATTAAGG AC RSP01034 Mean Expected Number 0.002 +strand -146 : -140 ACGTGGC AC RSP01509 Mean Expected Number 0.001 +strand -37 : -29 ACCAATCAG AC RSP01741 Mean Expected Number 0.000 +strand -13 : -1 TTgTTGACCAAAT Totally 5 motifs of 5 different REs have been found Description of REs found 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 928. Group TF: DEF/GLO /AC: RSP01003//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG1 /TF: DEF/GLO 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 1548. Group TF: WRKY11 /AC: RSP01741//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS3 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: calmodulin-binding protein |LOCUS: AT5G56360 |PROD: the same as GENE |complement(22840528..22845223) |SUPPORT | 16 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +47 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.17 T - 0.32 C - 0.24 1 tgcaggtttc gaacctgcga ccttcgcgtt attagcacga cgctctaacc 51 aactgagcta atgggcctat tttattacta agttgaatca agctacctaa 101 ttttaattat acaaaatagg atgcataacc aaactgtgtc gttttatcaa 151 atctgccaaa ctttgtctca cagacactgc acttgatctt tctcgtggcc 201 AAATCTTTTG ATTCTCCGTT CATTCTCCGG TTCCGATCTC GAAGAAGATG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00120 Mean Expected Number 0.000 -strand -57 : -70 AAACGACACaGTTT AC RSP01135 Mean Expected Number 0.001 -strand -47 : -59 AGATTTGATAAAA Totally 2 motifs of 2 different REs have been found Description of REs found 118. Group RE: Box B /AC: RSP00120//OS: Pisum sativum /GENE: AS1/RE: Box B /TF: unknown 1053. Group RE: I-box-like sequence /AC: RSP01135//OS: Cucumis melo /GENE: Cucumisin/RE: I-box-like sequence /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: mitochondrial substrate carrier family protein |LOCUS: AT5G56450 |PROD: the same as GENE |complement(22875735..22877288) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +298 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.38 C - 0.16 1 aggtttgttt aatatcattt tggtctcaat gcggtttgtt ttttataatg 51 gaatatagat gggttttggt tttgaagata tgttatgttg ttaaagtaag 101 tatatttggg cctgtagaca ttgagcccaa gcCCAATatt tgatgtatca 151 gaattatcca gtctcagttc atctatcttt cgcaacatct cttgaaagct 201 AACACCTTCC TTTATCTCGT TGTGGCTTGA GTTCGAATCC ACGCAAGGAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00716 Mean Expected Number 0.006 -strand -127 : -135 CAAAACCAA AC RSP00889 Mean Expected Number 0.002 +strand +39 : +45 CCACGCA AC RSP01473 Mean Expected Number 0.000 -strand -161 : -173 AACAAACCGCATT AC RSP01631 Mean Expected Number 0.001 +strand -10 : +1 CTTGAAAGCTA AC RSP01637 Mean Expected Number 0.001 +strand -10 : +1 CTTGAAAGCTA Totally 5 motifs of 5 different REs have been found Description of REs found 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 821. Group RE: GC motif /Group TF: bZIP TF /AC: RSP00889//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: GC motif /TF: bZIP TF 1342. Group RE: AACA motif /AC: RSP01473//OS: Oryza sativa /GENE: GluA-3/RE: AACA motif /TF: unknown 1451. Group RE: TERE /AC: RSP01631//OS: Arabidopsis thaliana /GENE: ZCP4/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PRF3 |LOCUS: AT5G56600 |PROD: profilin 5 (PRO5) (PRF3) |complement(22926914..22928047) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.42 C - 0.18 1 catttgtttt tttttaggaa aagaccatat ttaattaaat gttttggttt 51 tccttaaata agttttctat ttttttattt atttcctccc ttttcattat 101 aactggttga ttttctaatA CAATtttcct ctttagaaac tattaaaaag 151 agctgtgtct ggcacgtgtc aatcatgtat aaaacaatat atttgcgtaa 201 ATGCCATTGC CACACACTCA CTCACTCGTA GTTTCGACGC TATCTCTAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00049 Mean Expected Number 0.001 +strand -40 : -31 gGCACGTGTC AC RSP00204 Mean Expected Number 0.001 -strand -31 : -40 GACACGTGcC AC RSP00219 Mean Expected Number 0.000 -strand -30 : -41 TGACACGTGcCA AC RSP00524 Mean Expected Number 0.005 -strand -32 : -38 ACACGTG AC RSP00936 Mean Expected Number 0.000 +strand -41 : -30 TGgCACGTGTCA AC RSP01035 Mean Expected Number 0.005 +strand -37 : -31 ACGTGTC AC RSP01152 Mean Expected Number 0.000 -strand -31 : -40 gACACGTGCC AC RSP01210 Mean Expected Number 0.007 -strand -139 : -148 CTTATTTAAG Totally 8 motifs of 8 different REs have been found Description of REs found 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1120. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/RE: EM2 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 60S ribosomal protein L31 (RPL31C) |LOCUS: AT5G56710 |PROD: the same as GENE |complement(22961062..22962196) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +203 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.31 C - 0.22 1 gaaccaatca gtttaaattc gagtaaaaca tttacttcat atgtatttgg 51 gccgtaaatg ggctactaaa ataagaaagc gtaagaggga aatgccaagc 101 ataatagcac aaaaaatagg cccattaaag cCCAATcatt tatttatttt 151 agggttaact caaagtgccg catatatatg cttagttctc ttccttcgtc 201 CCCTTTCTGT CTCTCGGCGT TCTTCAATCG AAAGGTACTA CTCTCTCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.010 +strand -53 : -47 TTTAGGG AC RSP00864 Mean Expected Number 0.002 -strand +50 : +42 AGAGAGAGA AC RSP01303 Mean Expected Number 0.002 -strand -43 : -52 TtAACCCTAA AC RSP01304 Mean Expected Number 0.002 -strand -43 : -52 TTAACCCTAA AC RSP01509 Mean Expected Number 0.001 +strand -198 : -190 ACCAATCAG Totally 5 motifs of 5 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1364. Group RE: CCAAT box /AC: RSP01509//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CCAAT box /TF: unknown ||Identical REs AC: RSP01510 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AtSerat1;1 |LOCUS: AT5G56760 |PROD: serine O-acetyltransferase (SAT-52) |complement(22978535..22979886) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 1 tgatcaaaaa tttgttacgg aaaaagtttg gtaagaatgt cggcagaatc 51 accaccgtcg attaacggaa agataaatct aatctaacgg ttattgataa 101 agcataaaac tgacggctcc gattttattt tctaaaaatc acgttaatca 151 cgcaccaggt ggactatcat tgtctttaat ctatggattt aaaaatttcc 201 GCACGATTAA AGAGCGTCTC GAAAATTAAC TTTTATAGGT AGGAGGAGAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00878 Mean Expected Number 0.001 +strand -46 : -39 CCAGGTGG AC RSP00881 Mean Expected Number 0.008 -strand -103 : -112 ATCAAtAACC AC RSP01010 Mean Expected Number 0.001 -strand -156 : -164 TGCCGACAT AC RSP01458 Mean Expected Number 0.003 +strand -14 : -2 ATTTAAAAATTTc Totally 4 motifs of 4 different REs have been found Description of REs found 814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1 817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family 935. Group TF: DREB2A /AC: RSP01010//OS: Arabidopsis thaliana /GENE: rd29A/RE: DREB2A BS /TF: DREB2A 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (GATA type) family protein |LOCUS: AT5G56860 |PROD: the same as GENE |complement(23006491..23008693) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +116 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.35 C - 0.18 1 atccggactt gtccgaaagt aggattttaa aacagtattt tatccatgtc 51 ttctaaaatt cactgtacaa gttgatgtat acagagacat aagtacccta 101 actctagact cacgtaaacc atttattaaa ctgatatatt ttatatatga 151 atataataga gaccatgtgt gtttggctcg tgtctcatct cattgccttt 201 AAAAAGGATC AAACATAGTA TAGCTTGGAC TCTTTTTGCC GTCTATGATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01640 Mean Expected Number 0.004 -strand -109 : -118 tTATGTCTCT Totally 1 motifs of 1 different REs have been found Description of REs found 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G56910 |PROD: the same as GENE |23040148..23041428 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.13 T - 0.37 C - 0.24 1 acggagacga ctatttgaga cttttctttc actcttaatg ggcttctaat 51 gagcccagtt aagtgggctt ctcatgagcc attcatctaa tatttgagcc 101 ttctctttca ctactaaatg ggcttctcat gagctttttt tttctcaaat 151 catcatcatc attcatccat ctatatttca aaaaagaaaa caaacacgat 201 AATTGTCTTC TATTACCTCT CTCTCATTCA CCTCTCGCTA AGTGTGCGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.002 +strand -21 : -12 AAAAAAGAaA Totally 1 motifs of 1 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G56920 |PROD: the same as GENE |23042122..23043141 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +104 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.37 C - 0.14 1 aactttgaga tactctgtac aacccatcat gacaattctc attttactat 51 tggtttaatt ttttaactaa aatacttttt taatcaaata atcaaattat 101 aatataatat taatattttt ttgtttgaga aactttgtgg gtttctcatg 151 gatggaatag atggaaatgc ccttagctgc agcatgcatt gagaatacgt 201 AGATACTTTC TCTCGAATCT TCTTCTTCAG AAAGAAAAAA AGAGAAAAGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00445 Mean Expected Number 0.001 +strand +36 : +45 AAAAAAGAGA AC RSP00860 Mean Expected Number 0.003 +strand +29 : +37 AGAAAGAAA AC RSP00868 Mean Expected Number 0.001 -strand -92 : -103 TATTATATTATA Totally 3 motifs of 3 different REs have been found Description of REs found 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein S16 family protein |LOCUS: AT5G56940 |PROD: the same as GENE |23048027..23049637 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +78 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.21 T - 0.34 C - 0.21 1 taggctcaac ttcggcttgt ctttcgccgg agaaaggccg tcttgtggcg 51 gtggacgatt taaaaatctt tattgggctt gtatcatctt tgatgttaat 101 gggcttcctg attttgtagg cCCAATgaat ccttcaacaa acggcgtcgt 151 aataaggatc caaaccctaa aagatttatg gattcagagt tttcgaaatt 201 GGAATTTCTC ACTCTCTCTA TCTCTCTTAG CCAGCTCTGA TCATTTCGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00040 Mean Expected Number 0.009 +strand -65 : -59 AACAAAC AC RSP00279 Mean Expected Number 0.001 -strand -31 : -39 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand -39 : -31 AAACCCTAA AC RSP00629 Mean Expected Number 0.005 +strand -139 : -132 AAAAATCT AC RSP01303 Mean Expected Number 0.002 +strand -40 : -31 cAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 39. Group RE: AACA box (D) /AC: RSP00040//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (D) /TF: unknown 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 605. Group TF: CCA1 /AC: RSP00629//OS: Arabidopsis thaliana /GENE: Lhcb1*3/RE: CCA1 BS2 /TF: CCA1 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NMT1 |LOCUS: AT5G57020 |PROD: |23092093..23094127 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +584 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.40 C - 0.10 1 tttgctgatt tttttttgtt tgctttggtt ttttctaatt tttattcatc 51 tggttctttt actgcggagg gaaattaaat tcagtgtttg gaattggaac 101 atcgtatata tagtttttta gtaatactga aaatgtcttc ttcagtagaa 151 attgttcatg ttattttcgt tcactgcata gtgatggaat gaaaaaacgg 201 GGTCAAATTA ATAGAAGAAG TAATATAAAG GGGGCAAAAT GCAATACACA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00447 Mean Expected Number 0.009 -strand -172 : -181 AcCAAAGCAA AC RSP00677 Mean Expected Number 0.006 -strand -24 : -29 GCAGTG AC RSP01642 Mean Expected Number 0.002 +strand -70 : -61 AAATGTCTtC Totally 3 motifs of 3 different REs have been found Description of REs found 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 646. Group RE: Box 1 /AC: RSP00677//OS: Hordeum vulgare /GENE: Amy32b/RE: Box 1 /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G57040 |PROD: the same as GENE |complement(23101131..23102472) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +130 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.37 C - 0.17 1 tttttgtgaa gctgcaaaaa tagtgagacg tgaatcacct attggactgg 51 gctaggccca tcgattctct gataaacttt cattaaataa acgtttgact 101 tttgccacca caccgcatgt ttgatttttt gttgtcgttg aaACAATtat 151 atttttcgag acaatacgaa attgattttc ccagtgatta tgtggctgag 201 TGGCTCAGGT TTTGTTTTTC TCCTTAATTT TCTTGGCCAA TAAAGAAAAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.003 -strand -167 : -176 TtCACGTCTC AC RSP00880 Mean Expected Number 0.006 -strand -61 : -70 CAACGaCAAC Totally 2 motifs of 2 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transporter-related |LOCUS: AT5G57100 |PROD: the same as GENE |complement(23123528..23125824) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.12 T - 0.33 C - 0.30 1 ttcaagtgac agagccagac actcactacc tctgtgtttt ttttaatggt 51 cggtgaagaa accgtgattt gctcaaatca ccaaaataat actctcttca 101 atctccatct tcccgttatc tccgccacgt gtttctctct ttttgtctcc 151 tttcttcttc tccctaatct taatctcaga aaccaacaac atcagtagtc 201 AGTACCCCCA CACACACAGA GAGACCCTTT TTCGATTCTC CACTTTCTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 -strand -69 : -77 ACACGTGGC AC RSP00024 Mean Expected Number 0.006 -strand -110 : -117 TATTATTT AC RSP00163 Mean Expected Number 0.010 +strand -62 : -52 CtTTTTGTCTC AC RSP00171 Mean Expected Number 0.006 +strand +19 : +24 GAGAGA AC RSP00175 Mean Expected Number 0.001 -strand -70 : -77 CACGTGGC AC RSP00204 Mean Expected Number 0.002 -strand -68 : -77 aACACGTGGC AC RSP00524 Mean Expected Number 0.008 -strand -69 : -75 ACACGTG AC RSP00819 Mean Expected Number 0.005 +strand -77 : -68 GCCACGTgTT AC RSP01034 Mean Expected Number 0.008 -strand -71 : -77 ACGTGGC AC RSP01255 Mean Expected Number 0.003 -strand -69 : -76 ACACGTGG AC RSP01772 Mean Expected Number 0.007 +strand -158 : -152 TTAATGG Totally 11 motifs of 11 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 23. Group TF: PCF1 /AC: RSP00024//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX3 /TF: PCF1 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1572. Group TF: WOX11 /AC: RSP01772//OS: Oryza sativa /GENE: PR2/RE: WOX11 BS /TF: WOX11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57120 |PROD: the same as GENE |complement(23139766..23141739) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.18 1 ttttttaatg acccattaaa ctcatacttt ttttgtaatg acccattggg 51 ctttaagtct agtaatgaaa caaaaaaaaa agagaaaagg aaaagcttgc 101 aaaccataac gaaataaacc ggtatagaat ccgggtcggg tttaatttgc 151 acacccggta aaaaacccta atttattttg gttccaggca attttttttt 201 GTCTTGAGCT CAAATTGAAA ACACGAGCTT CCTAAACCCT AGCAGCAGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand -30 : -38 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand -38 : -30 AAACCCTAA AC RSP00445 Mean Expected Number 0.002 +strand -125 : -116 AAAAAAGAGA AC RSP00521 Mean Expected Number 0.006 +strand -50 : -44 ACACCCG AC RSP01303 Mean Expected Number 0.005 +strand -39 : -30 aAAACCCTAA Totally 5 motifs of 5 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 497. Group TF: DPBF-1; DPBF-2 /AC: RSP00521//OS: Daucus carota /GENE: Dc3/RE: E1-core /TF: DPBF-1; DPBF-2 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G57170 |PROD: the same as GENE |complement(23179300..23180506) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +140 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.34 C - 0.15 1 tatgcgattg catgattctc catgctcatt ccaaaataaa ataaaaaatc 51 gaaattagga aaaacataac tctctattgg tcccctccaa aatgtaaaaa 101 aaataaaATT GAtattttac atttgggctg aaatttgcat tgtaggccca 151 tgggattccg gtttgataac tttatattgc ccaattttat atcgattttt 201 AATTTCAATT TTAAAGATAA AAGTAAATGA ACTGGTAAGC CACTGGTTTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 +strand -112 : -101 AAAAtGTAAAAA AC RSP00646 Mean Expected Number 0.000 -strand +6 : -8 GAAATTAAAAATcG AC RSP01475 Mean Expected Number 0.002 +strand -114 : -106 CCAAAATGT Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 620. Group RE: C1-box /AC: RSP00646//OS: Daucus carota /GENE: DC 59/RE: C1-box /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57345 |PROD: the same as GENE |complement(23246652..23247861) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.23 C - 0.19 1 aaccaaaagc agatttaggt ccggttagat gaataaccgg ttcgattaat 51 ttcgtcagac cgatttgatc cgtggatatc attaatccgt ggaatacatg 101 tgtgttcttg agtaggccac tagttataat ccacgtggca agcattttat 151 cacaaaccca gagctacaaa aacaaaacca agaagacgag aaggatcttt 201 AACAGAGAAA AAAGAGCTTT AGACCAAATC ACCAGAAACA AAACAAAAAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -71 : -62 tCCACGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -62 : -71 GCCACGTGGa AC RSP00153 Mean Expected Number 0.002 +strand -70 : -61 CCACGTGGCa AC RSP00175 Mean Expected Number 0.001 +strand -69 : -62 CACGTGGC AC RSP00189 Mean Expected Number 0.002 +strand -71 : -62 TCCACGTgGC AC RSP00340 Mean Expected Number 0.002 +strand -71 : -62 TCCACGTGgC AC RSP00682 Mean Expected Number 0.001 -strand -62 : -71 GCCACGTGGA AC RSP00683 Mean Expected Number 0.002 -strand -62 : -71 GCCAcGTGGA AC RSP00716 Mean Expected Number 0.006 +strand -28 : -20 CAAAACCAA AC RSP00718 Mean Expected Number 0.001 +strand -70 : -63 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand -63 : -70 CCACGTGG AC RSP00784 Mean Expected Number 0.000 +strand -71 : -62 TCCACGTGGC AC RSP00836 Mean Expected Number 0.001 -strand -127 : -134 CACGGATC AC RSP00938 Mean Expected Number 0.000 -strand -61 : -72 TGCCACGTGGAt AC RSP01034 Mean Expected Number 0.006 +strand -68 : -62 ACGTGGC AC RSP01507 Mean Expected Number 0.001 +strand -134 : -127 GATCCGTG AC RSP01726 Mean Expected Number 0.000 -strand -61 : -72 TGCCACGTGGaT AC RSP01734 Mean Expected Number 0.007 +strand -71 : -65 TCCACGT Totally 18 motifs of 16 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57370 |PROD: the same as GENE |23261960..23263639 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.37 C - 0.13 1 ctgtaaattt tatttatgat tacaaacttt aataagatcc tttctcttct 51 tatgctattg gaccactatt ttcatttcca atttcatact tttagttcgg 101 agacaaaatg agattattat tatttttccA TTGAgtatga tgaatataag 151 aaaattggaa aaatagagga taaaacccca aattttcatt ttaatagaaa 201 AAATTGGGGA AGAAAATTTA CAGTGTTGAA ATTGGTTAAA CCCTGACACT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.001 -strand -91 : -101 CaTTTTGTCTC AC RSP00288 Mean Expected Number 0.010 -strand -136 : -141 TGGTCC AC RSP01068 Mean Expected Number 0.005 +strand +42 : +50 CCTGACACT AC RSP01294 Mean Expected Number 0.000 +strand -76 : -65 TTTCCATtGAGT Totally 4 motifs of 4 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 279. Group RE: Motif VI /AC: RSP00288//OS: Pisum sativum /GENE: PSPAL2/RE: Motif VI /TF: unknown 987. Group TF: HvH21 /AC: RSP01068//OS: Hordeum vulgare /GENE: Synthetic OLIGOs/RE: HvH21 BS /TF: HvH21 1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC: RSP01299 RSP01300 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GS1 |LOCUS: AT5G57440 |PROD: |complement(23288353..23290155) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +29 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.30 C - 0.24 1 tgtatagaag aagactaaac atatttagtt ccaatgtata agtttcaaca 51 tctcttatta gcactcttca ctatgagcaa aacttctact ctctatgtga 101 accggcccat ttacaagata cggcccatga accttttgtt atacgtcata 151 gtgacatcac tctccagcgt aaaaactaac ttccgactga aactggattc 201 GGTTCGTCGT TATCGGTATC GAATCAACAA TGTCGAATCC TGCAGCCGTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00203 Mean Expected Number 0.005 +strand -61 : -52 TATACGTCAt AC RSP00232 Mean Expected Number 0.008 +strand -58 : -49 ACGTCATAGt AC RSP00934 Mean Expected Number 0.001 +strand -180 : -171 ATATTTAGTT Totally 3 motifs of 3 different REs have been found Description of REs found 196. Group TF: ABI5 /AC: RSP00203//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.1 /TF: ABI5 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 863. Group RE: AT-2b /AC: RSP00934//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2b /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: porin, putative |LOCUS: AT5G57490 |PROD: the same as GENE |complement(23300906..23303160) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +599 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.20 T - 0.24 C - 0.18 1 gtaaaatcaa attttgtcac atacaccaac attaggggta caatagtcat 51 ttaaacaggt gaaaagaagg cggcttgggg agtgaatggg cctcacgaat 101 tatatacagc tttgactgtg acataagtta aatgacagac gaataaacaa 151 aaaagccctt taatcagaaa aaaaaagtaa agcgtgacct aacgaacatc 201 AACGACAAGT GACATTATCA TTACTCTCAT CGAGAGCGTT GGTCTCTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00030 Mean Expected Number 0.003 -strand -126 : -132 AGCCGCC AC RSP00056 Mean Expected Number 0.005 -strand +13 : +4 GtCACTTGTC AC RSP00535 Mean Expected Number 0.001 +strand -111 : -95 GCCT-- +7 bp --TATATA Totally 3 motifs of 3 different REs have been found Description of REs found 29. Group TF: EREBP /AC: RSP00030//OS: Nicotiana sylvestris /GENE: OLP/RE: ERRE /TF: EREBP ||Identical REs AC: RSP00082 RSP01344 RSP01523 RSP01764 RSP01775 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 511. Group RE: LRE-TATA AA1 /AC: RSP00535//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57500 |PROD: the same as GENE |complement(23303463..23304797) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.35 C - 0.21 1 gagacactag catgataaat ggcgtgaaat actgaagcaa cacacttgct 51 tcgtttacaa actctacttt gaacctcacg ttccttaagc ttctctaaag 101 ctcttttttt tttattcccc ataacaaaaa tatcacaaag aaaaaatcca 151 aatgcgtttc cttgaaggtt aaaaagtttc gtttttattt aatttcttac 201 TTTCCTCTGC TTCTCAACAT CTCTAAGCTT TCATTGAACA AGGAATATGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.003 +strand -146 : -135 TtACAAACTCTA Totally 1 motifs of 1 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: senescence-associated protein-related |LOCUS: AT5G57810 |PROD: the same as GENE |complement(23441501..23442873) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.33 C - 0.22 1 aaaaactgta atgaatttat actttaaaca aaacaaaaaa aaaaaacact 51 tttggataat tgatattcgg acaagatctc gttgtactta attaatgtgt 101 acttatttat ctctaactta caaatttgac tctgtaaaac ccaccacaca 151 ctcactcact cagacaccta tatttatgat ctctctgttt ctatatatac 201 ATTTCCCCAT ATCAACTCAA CACCTCCATA GAGAGAGAGA GCTTTCTTTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00171 Mean Expected Number 0.009 +strand +31 : +36 GAGAGA AC RSP00171 Mean Expected Number 0.009 +strand +33 : +38 GAGAGA AC RSP00171 Mean Expected Number 0.009 +strand +35 : +40 GAGAGA AC RSP00270 Mean Expected Number 0.002 +strand -156 : -146 aACACTTTTGG AC RSP00680 Mean Expected Number 0.006 -strand -64 : -73 TtACAGAGTC AC RSP00864 Mean Expected Number 0.000 +strand +30 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 +strand +32 : +40 AGAGAGAGA Totally 7 motifs of 4 different REs have been found Description of REs found 165. Group RE: GAGAGA motif /AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GAGAGA motif /TF: unknown 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 649. Group RE: GARE/Box 2 /AC: RSP00680//OS: Hordeum vulgare /GENE: Amy32b/RE: GARE/Box 2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cytochrome c oxidase subunit 6b, putative |LOCUS: AT5G57815 |PROD: the same as GENE |23443903..23445077 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.33 C - 0.17 1 ggatgctcgt aggtcaattt tatatttaat actaaagaca tattgacatt 51 gattttaaaa aataaaatgg tgaatcagat ttcaatctaa aatcacataa 101 acaaattaaa agacttaatt ttgggcccat taaagcCCAA Taaaatgggc 151 tacttcggtt ctgttgtagt aaacggtcga accggagaga tatgagtgtc 201 ATATCCTGAT TTCCCCACTC GACGCTGATT TCTTCTCTGC TTCTGTAATT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00941 Mean Expected Number 0.009 +strand -121 : -114 TTTCAATC AC RSP01594 Mean Expected Number 0.009 -strand -114 : -121 GATTGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: anthranilate synthase beta subunit, putative |LOCUS: AT5G57890 |PROD: the same as GENE |complement(23464633..23466905) |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +57 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.34 C - 0.20 1 tgcccatagt tctgacttgg gtcggttgtt tgttatatgt cgtgttgtta 51 aaatggacct taggcccacg ggtctaaacg ggctatttgt aatgtttgaa 101 cgggtaccca tttaaacccg attactaacg ggtctaaaca aatattaacc 151 gagtggccca tttattttta agtttttgga attttctatg ctaaaacgac 201 AACGTTACGA GTTCTTCAGT TTCTCAGTTC TCCAAACGAC AACTTCGAGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01639 Mean Expected Number 0.007 -strand +44 : +35 AGTTGTCGTT Totally 1 motifs of 1 different REs have been found Description of REs found 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SKIP1 |LOCUS: AT5G57900 |PROD: |complement(23466937..23468159) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +18 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.25 C - 0.18 1 aaaaacctta tccaatggtg gcttattgca aacgtgacat ttctataccg 51 aaacatgtgt cagcaaacga catttatgga agtgatccaa aagtcaagga 101 acaaaattaa cggtcagatg cATTGAcacg tgtctaaaga gacacgtttc 151 gtgtaacttt aaactacatt attaccgaac acaaagaacc gatctttgaa 201 AACAAAACAA GAATCTTTAT GGAAGAAGAC GGGTCTGATT GGGGCGGATT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00143 Mean Expected Number 0.002 +strand -76 : -67 GACaCGTGTC AC RSP00143 Mean Expected Number 0.003 -strand -67 : -76 GACaCGTGTC AC RSP00204 Mean Expected Number 0.002 +strand -76 : -67 GACACGTGtC AC RSP00204 Mean Expected Number 0.001 -strand -67 : -76 GACACGTGtC AC RSP00524 Mean Expected Number 0.007 -strand -68 : -74 ACACGTG AC RSP01031 Mean Expected Number 0.007 +strand +10 : +17 AGAATCTT AC RSP01035 Mean Expected Number 0.007 +strand -73 : -67 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -75 : -68 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -68 : -75 ACACGTGT AC RSP01600 Mean Expected Number 0.007 -strand +1 : -7 TTTCAAAG Totally 10 motifs of 7 different REs have been found Description of REs found 139. Group TF: TRAB1 /AC: RSP00143//OS: Oryza sativa /GENE: Osem/RE: CE3 /TF: TRAB1 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G57910 |PROD: the same as GENE |complement(23468375..23469828) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +139 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.08 T - 0.36 C - 0.30 1 cctgcataag tctgcttcca tcttcatcac tgctgtctca acccaacaca 51 ctcacatcca aaaaagcaaa ttttgccttt tattttaatt tttgttttct 101 tttttctttt ctttccttct cacaacaaca acaacaacaa caacaacaac 151 agcaacaaca tgatgtgtcc ttcttttctg cttctttgtc cttctctgac 201 TTCTCCTCAC ATTGATATTA GACTTCTACA CGAAACCCAG AACCTTCCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00880 Mean Expected Number 0.003 +strand -54 : -45 CAACaGCAAC Totally 1 motifs of 1 different REs have been found Description of REs found 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 26S proteasome regulatory subunit, putative |LOCUS: AT5G57950 |PROD: the same as GENE |23477935..23479614 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +56 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.26 T - 0.29 C - 0.14 1 ttgcttggct ttaaagctgc ttgtgctgtc tgtaaaatta atatatgaag 51 tgtagaaaca aagagattat agccgttgga tttaataaat gtacggttag 101 gatcatatgc cggttaaaga atgggtctAT TGGgcctttt aatgaagccc 151 acaatatatt cacggtgaca tgctccggtc ccaaggtaga gagaagttgc 201 GATTGATTTC GGTGAAAGAA TTAAGAATCG ATCGGACTTG GAGAAGAGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01017 Mean Expected Number 0.008 +strand -147 : -140 AGAAACAA AC RSP01497 Mean Expected Number 0.003 +strand -129 : -120 GCCGTtGGAT AC RSP01635 Mean Expected Number 0.001 -strand -185 : -195 CTTTAAAGCCA AC RSP01637 Mean Expected Number 0.001 +strand -192 : -182 CTTTAAAGCTG AC RSP01637 Mean Expected Number 0.002 -strand -185 : -195 CTTTAAAGCCA Totally 5 motifs of 4 different REs have been found Description of REs found 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1457. Group RE: TERE /AC: RSP01637//OS: Arabidopsis thaliana /GENE: XSP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G58260 |PROD: the same as GENE |complement(23578108..23579167) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.30 C - 0.22 1 ctgaattttg ctccggcgag ctagctaaca atgtcacgac gttcggcggt 51 gcttaatggg cctaataaat aaagcccaat acattttaag cccattaatg 101 tctatccctt tgtggagtga gtcgtcgttt ctccaccatt ctttcatcat 151 catcgtcgtc aagcaatgtt tattatgagc tacttccaca agaagtcatt 201 GTTAGTAAAG AAATGGGAAG CCGTGCAATA TGTATACAAC GTGTGGCACC 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: hydrolase, alpha/beta fold family protein |LOCUS: AT5G58310 |PROD: the same as GENE |complement(23591706..23593310) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +77 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.28 C - 0.16 1 ttaagaaatt aaaaaaagaa gaagacggta tctatcttga tttgggcctc 51 actatagaat atgtgtttgg gccttcaaag ttgacccagt acacatcaaa 101 gactggtaat ggcagtcttt tagatgtaat ctttgtgagt tttggacaaa 151 gctgccgttt acatcgttca tttaaagaac atgatcatga tcatgaaaac 201 ATTACAGCCA TACAGAAATA TCACACTAAC TACAAAAGAT AGTGCAAGGA 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: malate dehydrogenase (NADP), chloroplast, putative |LOCUS: AT5G58330 |PROD: the same as GENE |complement(23596427..23599607) |SUPPORT | 12 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +94 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.29 C - 0.23 1 gcaacttttt taattctctg gtcagcggat gcaatgtcgc cggcgaagac 51 gaaaatctcc gatcagtgat caaattcgaa cggtttcagg tatattctgt 101 tATTGGgcct taactgggcc taaaagtcaa aagaagataa acggtgagga 151 tgctaaaaga gtgacaagtg tcaagagctg agccttatcc atagattccc 201 CAATCCTCTT TCTTACTACT CTGTCGCTTG GCGCGCTCTC TCTCCATAGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.005 -strand -29 : -38 GaCACTTGTC AC RSP00355 Mean Expected Number 0.006 -strand -99 : -106 TAACAGAA AC RSP00792 Mean Expected Number 0.008 -strand +31 : +22 CCAAGCgACA AC RSP00865 Mean Expected Number 0.001 -strand +45 : +37 GGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G58375 |PROD: the same as GENE |23613500..23614186 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.22 G - 0.10 T - 0.46 C - 0.22 1 aaagtgaact tcaaatataa aataggacat ataaggttat taggtatatg 51 aaattgaaaa ttcgaggtga ctttagggaa tggcctacct aatttgacac 101 ttcttcaaca actccaccct ttgaattttt ctcttcttta cctttttttt 151 tttttttttt tttttgttat ttaccctttt ttttccctcc tcatctctct 201 CTCTTCTTCT TCATCAGCTC CTCTATCTCT CTCTTTCCTG ATTGTCTTCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00260 Mean Expected Number 0.005 +strand -129 : -123 TTTAGGG AC RSP00847 Mean Expected Number 0.009 +strand -15 : -6 CCtCCTCATC AC RSP01480 Mean Expected Number 0.006 -strand -177 : -184 TATTTTAT Totally 3 motifs of 3 different REs have been found Description of REs found 253. Group RE: RTBP1 BS /AC: RSP00260//OS: Oryza sativa /GENE: Synthetic OLIGO/RE: RTBP1 BS /TF: unknown 789. Group RE: NON /AC: RSP00847//OS: Zea mays /GENE: H3C4/RE: NON /TF: unknown 1348. Group TF: AT-1SNBP /AC: RSP01480//OS: Glycine max /GENE: GS15/RE: AT-cm /TF: AT-1SNBP ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: peroxidase, putative |LOCUS: AT5G58390 |PROD: the same as GENE |complement(23616793..23618551) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.20 T - 0.25 C - 0.16 1 cttggtagaa aacaaaaaag ggaaatgtgc tgaaaaaagg gaaatgtaaa 51 catgcatgaa tatggtaaag gtggcgtaat taaggagtaa ggacccagta 101 atatagtgga tattcgagaa aaacttttct acgtgaacaa aaataaccta 151 cgtgtaagtt atcctctcta taaagccctc atcaagtctc tgagtccttc 201 AACGACTCAT AACTCATAGC TATATCTTGT CTTAAAAAGA AGAAGCAAAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00108 Mean Expected Number 0.002 +strand -150 : -143 CATGCATG AC RSP00108 Mean Expected Number 0.002 -strand -143 : -150 CATGCATG AC RSP00280 Mean Expected Number 0.004 -strand -64 : -73 TtCACGTAGA AC RSP01058 Mean Expected Number 0.004 +strand -97 : -90 TAGTGGAT AC RSP01260 Mean Expected Number 0.001 +strand -53 : -46 CTACGTGT AC RSP01470 Mean Expected Number 0.000 -strand -142 : -151 TCATGCATGT Totally 6 motifs of 5 different REs have been found Description of REs found 106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 978. Group TF: GT-3a /AC: RSP01058//OS: Brassica napus /GENE: extA/RE: GT-3a Box III /TF: GT-3a 1162. Group TF: GBF1 /AC: RSP01260//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS7 /TF: GBF1 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: cinnamoyl-CoA reductase family |LOCUS: AT5G58490 |PROD: the same as GENE |23660248..23661824 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +46 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.27 C - 0.22 1 gccatcaaat ccagtgaatc tcgtacttcc acgataatgt cgggccgaga 51 aattcaatgt ttaaaaaaac aaaacactgc gtgccgtttc acgactcagc 101 atctcactgt tatttagcta tcaaaacgac acggtgttta gaaATTGGgc 151 ttgggcttca cattccctaa tcatcatcat ctctgaaata gaaattatct 201 GAAACTTAGA GAGACAGAGA GAGAGAAAGC TCAAATTCAA TCATCAATGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.001 +strand +16 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 +strand +18 : +26 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 +strand +11 : +27 GAGAcAGAGAGAGAGAA AC RSP01640 Mean Expected Number 0.007 -strand +19 : +10 CTcTGTCTCT Totally 4 motifs of 3 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: phosphatidate cytidylyltransferase family protein |LOCUS: AT5G58560 |PROD: the same as GENE |23687641..23690513 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +98 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.12 T - 0.25 C - 0.23 1 actaggccca caataacaaa ttatgcgttt cctcaaacga acaccaccat 51 gtcatgaacc attctagccg aatccaaata gaacgaaact aaaattgctt 101 taatccatat gtgaccagat aaagtaaaac actccttttg gggaaataaa 151 tatccacttt tcaccatctt tttggtaaac aataaaacaa accaaatttt 201 GTGTGCTTGA GCAACAACAA CTACCAACCA GTTACTGTCA AAAAAAATAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.006 -strand -61 : -67 CAAAAGG AC RSP00651 Mean Expected Number 0.007 +strand +19 : +29 AaCTACCAACC AC RSP01214 Mean Expected Number 0.000 +strand -67 : -58 CCTTTTGGGG AC RSP01234 Mean Expected Number 0.005 -strand +10 : +4 TCAAGCA AC RSP01686 Mean Expected Number 0.006 -strand +5 : -1 CACACA Totally 5 motifs of 5 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 625. Group TF: C1 /AC: RSP00651//OS: Zea mays /GENE: a1/RE: C1 PBS/P /TF: C1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1139. Group RE: PLE-71 /AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/RE: PLE-71 /TF: unknown 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G58570 |PROD: the same as GENE |complement(23689929..23690513) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +157 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.30 C - 0.24 1 cacgaaaagg attttcttca aattacgaaa acgacgtcgc acgtaagatc 51 caaaaagacc caatccaacg ccccatatgt agagagcaat cactaacgaa 101 cgtcccagtc tcactttcta caccaacctt tatacaaaaa tccatctact 151 aaattatccc aaagaaatat atttaaactc ttcttttctt ctgtggtgac 201 ATATTGTTTT CATTTGATAC ATATTCTCCC AAGTCAAATT TATATTTCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00254 Mean Expected Number 0.005 -strand -191 : -197 CCTTTTC AC RSP00572 Mean Expected Number 0.007 -strand +4 : -4 ATATGTCA AC RSP01014 Mean Expected Number 0.008 -strand +16 : +7 CAAATGAAaA AC RSP01015 Mean Expected Number 0.008 -strand +16 : +7 CAAATGAAAa AC RSP01046 Mean Expected Number 0.004 +strand -140 : -132 CAATCCAAC Totally 5 motifs of 5 different REs have been found Description of REs found 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 548. Group RE: 3'/AT-rich J1 /AC: RSP00572//OS: Lycopersicon esculentum /GENE: rbcS1/RE: 3'/AT-rich J1 /TF: unknown 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: selenoprotein-related |LOCUS: AT5G58640 |PROD: the same as GENE |23715085..23716993 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.33 C - 0.16 1 tttgttcttt ttagttcttg aaccgagtca acaagaaaaa atagttgcgg 51 atcaaatatt tgggccgttt tgatactttt cagtgggctt tatgttactt 101 ctattcattc aagcgggggt gtaagtGCAA Taaaatataa atacaggggt 151 atttaagcaa atatttcaaa atataagacg tcaacaacaa tgagcaggat 201 AATAATATTC CAGCATCCAA ACAAGTCTTA TTGAACTCTC TCGTTCCGTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.009 -strand -38 : -48 TATTTGCTTAA AC RSP01678 Mean Expected Number 0.005 +strand -73 : -62 CAATAAAATATa Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: armadillo/beta-catenin repeat family protein |LOCUS: AT5G58680 |PROD: the same as GENE |complement(23725338..23726577) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.32 C - 0.20 1 aattaaagac ttggtctttt ttgacaacag attctttatt tgacttctag 51 aataacactg aaactggatc atcgtattaa tctaatttaa ttaaaatcaa 101 ttaaaagaaa accatcaagg ttctctcttt ctctgcagtt gcgtcccaaa 151 cacctatctt cacactctta aaaccaaacc tctaaaagaa gttttgatgc 201 AGTGAGTATT CAATCTCATA GACTCATAGC AATGGCGAAT CACAACAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.006 +strand -54 : -47 CAAACACC AC RSP00861 Mean Expected Number 0.002 -strand -69 : -77 AGAAAGAGA Totally 2 motifs of 2 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ROC7 |LOCUS: AT5G58710 |PROD: peptidyl-prolyl cis-trans isomerase |23735018..23736975 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +48 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.24 C - 0.18 1 ctattattat catttcttaa ttaacaacaa taaagaatca tagaattcac 51 aaagattaat gggctgtaac caaaccactc attagcccat tacggttcta 101 caacgatccg ggcCCAATta caattgtaca cgctacaagc caggtggcgg 151 aatttaattg gatattgacg tggctttggt gagaaatagc ggtggacaag 201 GGAAAAAAAA AGGGACTGTG GAGAAACACT TTAGCACGGT GCGACAAGAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00073 Mean Expected Number 0.002 +strand -62 : -53 GCCAgGTGGC AC RSP00073 Mean Expected Number 0.002 -strand -53 : -62 GCCACcTGGC AC RSP00113 Mean Expected Number 0.000 +strand -35 : -27 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -35 : -28 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -28 : -35 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -27 : -36 GCCACGTCAa AC RSP00701 Mean Expected Number 0.002 -strand -89 : -96 CCCGGATC AC RSP00878 Mean Expected Number 0.002 +strand -61 : -54 CCAGGTGG AC RSP01034 Mean Expected Number 0.007 +strand -33 : -27 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -25 : -35 AaGCCACGTCA Totally 10 motifs of 9 different REs have been found Description of REs found 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 667. Group RE: Oct (d) /AC: RSP00701//OS: Triticum aestivum /GENE: H3/RE: Oct (d) /TF: unknown 814. Group TF: RPCF-1 /AC: RSP00878//OS: Arabidopsis thaliana /GENE: PCNA/RE: Site I /TF: RPCF-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PRLI-interacting factor, putative |LOCUS: AT5G58720 |PROD: the same as GENE |complement(23736607..23740363) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +163 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.28 C - 0.20 1 aaattacgaa agtcaacgtg ggagatctaa ttttgactgg tgcatagttg 51 aaccggttca atatatgtac aatcaggagg aaaccgtgtt cggtgtttga 101 ttcgtgcgcg tggatttaaa acgtggtcac gatcaggcgc gtggATTGAc 151 gtggcgattc cgattcccaa tcaaaagtct ggacgagcaa aaaatttcct 201 CTGATATTGG CATCTCCATT ACTAACTCCT GATTTACGGT TAAAACGCCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.005 -strand -102 : -109 CAAACACC AC RSP00113 Mean Expected Number 0.001 +strand -54 : -46 TGACGTGGC AC RSP00214 Mean Expected Number 0.004 +strand -54 : -47 TGACGTGG AC RSP00215 Mean Expected Number 0.004 -strand -47 : -54 CCACGTCA AC RSP00248 Mean Expected Number 0.005 -strand -46 : -55 GCCACGTCAa AC RSP01106 Mean Expected Number 0.001 -strand -44 : -54 tCGCCACGTCA Totally 6 motifs of 6 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pfkB-type carbohydrate kinase family protein |LOCUS: AT5G58730 |PROD: the same as GENE |complement(23740634..23742691) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.30 C - 0.16 1 aaagaaattg tcttggataa gtggaggaga ataaggaatt cgaacaaaat 51 aaaattggag aaaaatgatc atattctcta ttttattatt taacatcatt 101 ttatttcggt tacaaaaaaa aaaaggagga aaattaggcg cgcgtcatct 151 ccctcgcgac acatatatca taagacagag agcagggaac gaatctcaag 201 ACGTTACGTA TTAGCTTATA GCCATTAGTT TTGTCTCTTC TTCTTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.007 -strand -112 : -120 ATAATAAAA AC RSP01641 Mean Expected Number 0.003 +strand +29 : +38 TTTTGTCTCT Totally 2 motifs of 2 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: dehydrodolichyl diphosphate synthase |LOCUS: AT5G58782 |PROD: the same as GENE |complement(23755373..23756690) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.33 C - 0.19 1 tcatctactt aacagagaga ttattaatct ttttacttac tctgtttcac 51 cgaataggca aaataaaaat gtcaatgctt aactcgtgtt tgtttagtga 101 aaaagtaact aagttaattt ttggcaaggt ttccaaaact gcgagagaaa 151 caaccagagc cagtcaataa aaactcaatt atgaatttta tgatccatgc 201 AAATCACTTG CTAGTACTCT TCACACTCTC TACAATGTTG TCTATGCTCT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00859 Mean Expected Number 0.001 -strand -36 : -45 GACTGGCTCt AC RSP01017 Mean Expected Number 0.010 +strand -55 : -48 AGAAACAA Totally 2 motifs of 2 different REs have been found Description of REs found 795. Group RE: GACTGGCTCC motif /AC: RSP00859//OS: Zea mays /GENE: H4C7/RE: GACTGGCTCC motif /TF: unknown 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G58787 |PROD: the same as GENE |23759676..23761845 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +283 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.18 T - 0.27 C - 0.20 1 tacagtacta ttttacaata acgtggtcgc caaattatta tttccaagtg 51 gaaaaatcct ttaatagaaa ctgccgaaaa gccctggtta ggccaaaaac 101 cccagtATTG Gaacaagggt atatccgtca ttgcacgcat aaatttcggg 151 acttttcttg aaaaagcagc ttcgagaatc gtaactgatg aatcgctaaa 201 GAGAGGTTTA TCGAGAAAAA TCCAAGATTT ACTAAAAAAC CACTATCTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.009 +strand -116 : -110 TGGTTAG AC RSP00440 Mean Expected Number 0.001 +strand -52 : -44 GGACTTTTC AC RSP00522 Mean Expected Number 0.009 -strand -150 : -156 CCACTTG AC RSP00683 Mean Expected Number 0.004 +strand -158 : -149 tCCAAGTGGA AC RSP00750 Mean Expected Number 0.004 -strand -180 : -191 TTATTGTAAAAT Totally 5 motifs of 5 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G58920 |PROD: the same as GENE |23810355..23811471 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +110 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.34 C - 0.18 1 tttgttattc gaaatttatt aatttaatta ggcttggtta gacattaagt 51 tctacttaag ttcctaacaa agcccacaaa gtccaaacaa caactgtaaa 101 cattttggAT TGAtgataga aataataagg cccaaaacgt ttataggccc 151 aatattacct aaacggcaag ttttagtaga gcttttctgt gttagcactt 201 ATAGAGATCG AAATTCTCTT CATTTTCTCA GGCTCCAATG TCGCTGGACT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.005 +strand -118 : -109 CCAAaCAACA AC RSP01475 Mean Expected Number 0.002 -strand -93 : -101 CCAAAATGT Totally 2 motifs of 2 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATUCP2 |LOCUS: AT5G58970 |PROD: uncoupling protein (UCP2) |complement(23825290..23828484) |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +240 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.29 C - 0.17 1 tgtatattga aatgtacacg tgaatagtct ttatacgtat ccctagcaac 51 accatccagt aaataacctt gtgtgtgcga aaaacagttt gtgtacataa 101 ccttccagtg gaggaagagg gtctatctaa tgacgtgttt agttacaaca 151 aaaacagaga gaaactttta tagtgaaaat agtaacacac aaaagattga 201 GAGAGACTCT GTACTTGTTC TGAATTCGTT ACGCCATTAT TAAATCTCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00524 Mean Expected Number 0.009 +strand -185 : -179 ACACGTG AC RSP00792 Mean Expected Number 0.006 +strand -159 : -150 CCtAGCAACA AC RSP00974 Mean Expected Number 0.002 +strand -186 : -177 TACACGTGaA AC RSP01258 Mean Expected Number 0.002 +strand -70 : -63 TGACGTGT AC RSP01602 Mean Expected Number 0.006 -strand +2 : -6 TCTCAATC AC RSP01654 Mean Expected Number 0.007 +strand -72 : -63 AATGACGTGT Totally 6 motifs of 6 different REs have been found Description of REs found 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G59000 |PROD: the same as GENE |23835980..23837463 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +14 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.11 T - 0.45 C - 0.17 1 tttctccaac atttcttctc tgcaagttaa aaacttacta aaataaaaaa 51 ttcaataaac ccttgaagac aaaattagct tttttgtttt ttttttattt 101 taattctttt ttggttattt ttttttatga ttttgttttt tgttttcctc 151 gtaaaaccca tgagtgaccc ctttggttcc tctttgcttt aatcttcaag 201 AAAGAAAGAA AAAAATGCCT TCTTTTGCTT TTGGATCTCA TCACCATTTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00444 Mean Expected Number 0.000 +strand -3 : +11 AAGAAAGAAAGAAA AC RSP00860 Mean Expected Number 0.000 +strand -2 : +7 AGAAAGAAA AC RSP00860 Mean Expected Number 0.000 +strand +3 : +11 AGAAAGAAA AC RSP01250 Mean Expected Number 0.002 +strand -154 : -145 AAAATTCAAT Totally 4 motifs of 3 different REs have been found Description of REs found 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted protein |LOCUS: AT5G59350 |PROD: the same as GENE |23958008..23959433 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +350 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.14 T - 0.33 C - 0.17 1 tgacatcagc ttctggtcat tatcgcttaa acgttataca aacaaatact 51 tttaaggaac attaacaaat aattagatta aaatacagat tttgggtaaa 101 ccataggtat ttatcttcaa aaagtgtacc ctaatttttc tctatctatc 151 tttttttcaa aatgttgagt taaaggcacc aagacttgcc attttgtgcc 201 AAGTATAACA AAGAACCCAA CTTGTGAACC TAAATTGCTG TGAAAGAGAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.003 -strand -73 : -83 TACACTTTTtG AC RSP00710 Mean Expected Number 0.003 -strand -126 : -138 TAATTATTTgTTA AC RSP01304 Mean Expected Number 0.003 +strand -76 : -67 TGtACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ACT4 |LOCUS: AT5G59370 |PROD: actin 4 (ACT4) |23967049..23969048 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +286 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.29 C - 0.21 1 aaaatcaata acgcttcatc cggagaacca tgacgaccaa aaccttaatt 51 tttgggcatg ttgaactttc acgtatccaa aaataggtga acacatgtcg 101 tcaccctctt agatatagga tttagcaaaa actaatggcc acgatctgtt 151 aagagtcaag cgataaaaag caaagctcct ttcgtttttt cagaaatttt 201 GAACCCATTC AAGTCGGGGC GTTGCAGGAT CCGATTTCTC GTTTTGTTCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.006 +strand -107 : -98 CaTGTCGTCA AC RSP01209 Mean Expected Number 0.008 -strand -115 : -124 CTATTTTTGG AC RSP01274 Mean Expected Number 0.004 +strand -133 : -124 TtCACGTATC AC RSP01651 Mean Expected Number 0.001 +strand +38 : +46 CTCGTTTTG Totally 4 motifs of 4 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1173. Group RE: ACE 1 /AC: RSP01274//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 1 /TF: unknown 1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: thymidylate kinase family protein |LOCUS: AT5G59440 |PROD: the same as GENE |23988457..23990142 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +302 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.30 C - 0.24 1 tgtcacttac caacgtcgtt aatacactaa cactatgatt ggtctgatcg 51 ctggatcggt gaaccaattg gaaaatccag ttcaagttgt tttagcaaaa 101 aCCAATctct tctctgaacc ggaaaactgt aaaccggtca gtacttgatc 151 cataagaaac cctccgagtg atttgaaggg tttgagctgt gttgaaaatg 201 GTTCGTCGGC TCTCTCTAAA CCCCTCTTTT TGTCGACTGC TTCTTCACGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.004 +strand -101 : -92 AACCAATCtC Totally 1 motifs of 1 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G59500 |PROD: the same as GENE |24003155..24004607 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.35 C - 0.23 1 agccaattta tagaaccttc ctcaatgttt acagttttgc ccctgcataa 51 cttgtcaaag cccattactt ttttaaaaga ccttaagcta ttctacatat 101 taccccactg ggccagtttc tcttagccca taggcccATT GTtagttacc 151 gaacactgaa gtaaaagagg ttcacttctc tctctttcta tgtgaagttt 201 ATCTGTTTTC CAGTTTCGAT TTCGAATCAA ATATGAAGCT GAAAGAGTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00206 Mean Expected Number 0.002 -strand -93 : -104 GTGgGGTAATAT AC RSP00653 Mean Expected Number 0.008 +strand -25 : -15 TTCTCTCTCtT AC RSP00861 Mean Expected Number 0.006 -strand -12 : -20 AGAAAGAGA AC RSP00864 Mean Expected Number 0.004 -strand -16 : -24 AGAGAGAGA Totally 4 motifs of 4 different REs have been found Description of REs found 199. Group TF: GT-1 /AC: RSP00206//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II* /TF: GT-1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G59510 |PROD: the same as GENE |24007300..24007922 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +15 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.33 C - 0.19 1 actttaccga ctttttaaaa gacattattt ccacgaatgg ccttaaaagc 51 tttgacctat ttcattccat acgctctatt atctctttag ttccgtcttc 101 aattcaaaca tcaaacaaac acacacacac atatatattt tctatacatt 151 catgtagtac atctatataa gagagagttt ggatcaaaag aacttaaaac 201 ATCCACTCTT GATTCATGGA TGATGAAAAT TTGTGGAAAG TTGTGAAGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00234 Mean Expected Number 0.003 -strand -151 : -160 GCTTTTAAGG AC RSP00416 Mean Expected Number 0.006 -strand +22 : +16 CATCCAT AC RSP01339 Mean Expected Number 0.001 +strand -196 : -188 TACCGACTT Totally 3 motifs of 3 different REs have been found Description of REs found 227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown 398. Group RE: Box-1 /AC: RSP00416//OS: Hordeum vulgare /GENE: EPB-1/RE: Box-1 /TF: unknown 1224. Group RE: DR1 /AC: RSP01339//OS: Arabidopsis thaliana /GENE: rd17/RE: DR1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SRR1 |LOCUS: AT5G59560 |PROD: sensitivity to red light reduced protein (SRR1) |complement(24017782..24019183) |SUPPORT | 1 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +383 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.29 C - 0.24 1 agtactaagc tgatgtgtca atcactgaat gcatcagtta ttggaaaatt 51 gactgctgat ttagtatatt tagattagta aaacaaaatc aaaagaaata 101 acaggaaaca agacttcagt tgtctctatc tcgcgccttt ATTGGgccgt 151 atctagaccc attccatttc ctctagccca atacctgttt accaaatctt 201 CGCGTACAAA TCATCTGATT CACTTTATCG CCGCGCGACT CGGCGCACCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.003 +strand +29 : +35 CGCCGCG AC RSP00750 Mean Expected Number 0.002 +strand -163 : -152 TTATTGgAAAAT AC RSP01033 Mean Expected Number 0.005 +strand -65 : -56 CCTTTATTGG Totally 3 motifs of 3 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 712. Group TF: GT-1 /AC: RSP00750//OS: Catharanthus roseus /GENE: STR/RE: BN rev /TF: GT-1 958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: myb family transcription factor |LOCUS: AT5G59570 |PROD: the same as GENE |24021114..24022738 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +159 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.21 T - 0.33 C - 0.18 1 ggtcacttgt tactagttgt aattgcaact atctgcctaa accgtcgtgc 51 cttttgtcta cattctagaa ccatgcacta atgacgtggc tggagataag 101 ttggttgatt acacacgtgt cacttagaca gagcgagtag actttgatgc 151 gggtaaaaga tattttagat tatctagctc gctaggccac gttggcggat 201 ATTTGCACTT TTTCTTTTTT TAAAAAGAAA AAAAACTAGG CTCTACGAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00016 Mean Expected Number 0.008 +strand -129 : -123 CATGCAC AC RSP00049 Mean Expected Number 0.003 +strand -89 : -80 CaCACGTGTC AC RSP00113 Mean Expected Number 0.000 +strand -119 : -111 TGACGTGGC AC RSP00153 Mean Expected Number 0.002 -strand -7 : -16 CaACGTGGCC AC RSP00163 Mean Expected Number 0.002 +strand -151 : -141 CCTTTTGTCTa AC RSP00214 Mean Expected Number 0.003 +strand -119 : -112 TGACGTGG AC RSP00215 Mean Expected Number 0.003 -strand -112 : -119 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -111 : -120 GCCACGTCAt AC RSP00524 Mean Expected Number 0.009 +strand -88 : -82 ACACGTG AC RSP00819 Mean Expected Number 0.003 -strand -111 : -120 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 -strand -111 : -120 GCCACGTCaT AC RSP01034 Mean Expected Number 0.007 +strand -117 : -111 ACGTGGC AC RSP01034 Mean Expected Number 0.006 -strand -9 : -15 ACGTGGC AC RSP01152 Mean Expected Number 0.001 +strand -89 : -80 CACACGTGtC AC RSP01256 Mean Expected Number 0.003 +strand -88 : -81 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -81 : -88 ACACGTGT AC RSP01275 Mean Expected Number 0.004 -strand -111 : -120 gCCACGTCAT Totally 17 motifs of 15 different REs have been found Description of REs found 15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: histone H4 |LOCUS: AT5G59690 |PROD: the same as GENE |24068778..24069369 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +97 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.31 C - 0.25 1 ggcgccacat gtaaaacaaa agacgattct tagtggctat cactgccatc 51 acgcggatca ctaatatgaa ccgtcgatta aaacagatcg acggtttata 101 catcattttA TTGTacacac ggatcgatat ctcagccgtt agatttaata 151 tgcgatctga ttgctcaaaa aatagactct ccgtctttgc ctataaaaac 201 AATTTCACAT CTTTCTCACC CAAATCTACT CTTAACCGTT CTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.001 +strand -152 : -142 TCACGCGGATC AC RSP00836 Mean Expected Number 0.002 +strand -83 : -76 CACGGATC AC RSP00837 Mean Expected Number 0.002 +strand -116 : -107 AGATCGACGG AC RSP00839 Mean Expected Number 0.001 +strand -149 : -142 CGCGGATC AC RSP01507 Mean Expected Number 0.002 -strand -76 : -83 GATCCGTG Totally 5 motifs of 5 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown 784. Group RE: OCT /AC: RSP00839//OS: Arabidopsis thaliana /GENE: H4A748/RE: OCT /TF: unknown ||Identical REs AC: RSP00845 1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: gibberellin-regulated family protein |LOCUS: AT5G59845 |PROD: the same as GENE |24128550..24129238 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +119 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.39 C - 0.21 1 ccttagtttt ttactatttg aattctgacg tactttttta ttagttgaat 51 ttctataaat gagaaaacat taattatttc ttaatctttg aacttaagcc 101 ccacaaaaat cttataaATT GGgacagatg gactagataa caagcgtttc 151 acctactcca aaatttccct ataagtaact ctttttgtaa cctccttttc 201 TTCCCAAACC ATCACTCCTT TTGCATTGTG TGAAACCTTC GAGTTTTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00405 Mean Expected Number 0.006 -strand -39 : -46 TTTGGAGT AC RSP00710 Mean Expected Number 0.006 +strand -130 : -118 TAATTATTTCTTA AC RSP00961 Mean Expected Number 0.008 -strand +25 : +18 TGCAAAAG AC RSP01000 Mean Expected Number 0.004 +strand -105 : -96 AaGCCCCACA AC RSP01312 Mean Expected Number 0.000 +strand -130 : -116 TAATTATTTCtTAAT Totally 5 motifs of 5 different REs have been found Description of REs found 387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown 676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown 886. Group TF: BPBF /AC: RSP00961//OS: Hordeum vulgare /GENE: ITR1/RE: PB1 /TF: BPBF 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1205. Group RE: Regulatory Motif 2 /AC: RSP01312//OS: Glycine max /GENE: 11S A2B1a/RE: Regulatory Motif 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 40S ribosomal protein S15A (RPS15aF) |LOCUS: AT5G59850 |PROD: the same as GENE |complement(24129426..24130836) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +526 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.28 C - 0.21 1 gaaagaaacc tgaatttgaa acacaagtga gagtcttacc tccaattaaa 51 cgacggcgct tggatataga cgatctaggc tgtgataatg ttaacgagat 101 attaagaaag gcccaaaata aagcccatta taatgatcca ttaaccagtc 151 tagtaaagtt tcataaggcg ccccaataaa aagcaaaaac cctaattcgc 201 ATCTTGTATT TAGTTCTCTT GTTAAACTTT GCCTCTTCGT CTTTTGCTCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.003 -strand -6 : -14 TTAGGGTTT AC RSP00369 Mean Expected Number 0.003 +strand -14 : -6 AAACCCTAA AC RSP00892 Mean Expected Number 0.004 -strand -96 : -104 TTAATATCT AC RSP01303 Mean Expected Number 0.006 +strand -15 : -6 aAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ADF4 |LOCUS: AT5G59890 |PROD: actin-depolymerizing factor 4 (ADF4) |24139653..24141138 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +118 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.46 G - 0.13 T - 0.27 C - 0.14 1 atctttcaac tgtcaaatct tagcccaaca aaaatactta gatgattatt 51 atatgttgac caaaacaata ataatatgct taccatatag tttattaatt 101 cataaataaA TTGAagaata cgaaattacg aagaaaataa ataaaaatac 151 aaaaagcagg ttcttctcta tatattcgga atttagcttc caaataacgc 201 AGAAGAAAGT AAAGAGAGAA GAAGCAAAAA GAGTCATATT CGTTGAAAAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01237 Mean Expected Number 0.001 +strand -35 : -26 CTCTATATAT Totally 1 motifs of 1 different REs have been found Description of REs found 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G59960 |PROD: the same as GENE |complement(24159240..24162559) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +193 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.26 C - 0.20 1 attctaccac aacgacgttg attactttta gaaaaaaaaa aagattaaaa 51 gaaaaataaa caggggcctg aagaggtaca cgtgtcttca gccaaccaac 101 acgtcatctc tctgatccag aatgcaacga agtcgttttg aaacaaacta 151 tatcttcgtt ttttcctctc gtgtctttat cggagttcac agtagcaaaa 201 GAGAAAAGAA GTTCACGCCT AATTACGACT AATTTTTAAA TCCAGAGGAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00041 Mean Expected Number 0.000 +strand -60 : -47 aAACAAACTATATC AC RSP00340 Mean Expected Number 0.003 +strand -124 : -115 TaCACGTGTC AC RSP00524 Mean Expected Number 0.007 -strand -116 : -122 ACACGTG AC RSP00694 Mean Expected Number 0.000 +strand -59 : -47 AACAAACTATATC AC RSP00916 Mean Expected Number 0.003 -strand -93 : -102 GATGACGTGt AC RSP00997 Mean Expected Number 0.004 -strand -93 : -102 GATGACGTGT AC RSP01035 Mean Expected Number 0.007 +strand -121 : -115 ACGTGTC AC RSP01256 Mean Expected Number 0.003 +strand -123 : -116 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -116 : -123 ACACGTGT AC RSP01258 Mean Expected Number 0.004 -strand -95 : -102 TGACGTGT AC RSP01654 Mean Expected Number 0.007 -strand -93 : -102 GATGACGTGT Totally 11 motifs of 10 different REs have been found Description of REs found 40. Group RE: AACA box (P) /AC: RSP00041//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (P) /TF: unknown 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 660. Group RE: AACAA motif /AC: RSP00694//OS: Oryza sativa /GENE: Gt1/RE: AACAA motif /TF: unknown ||Identical REs AC: RSP01062 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: aspartyl aminopeptidase, putative |LOCUS: AT5G60160 |PROD: the same as GENE |complement(24240942..24244094) |SUPPORT | 11 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.31 C - 0.15 1 aatttcaaat gaaacaaatt tttgtataat aatttattga aagtttttac 51 ataaaagtat aaaacgttta tatgaataaa taacattttt tttatgtact 101 catgaataaa taactattta tttaaaaaaC CAATtgggct ttgtaatggg 151 ccaataaaac ttctcgggtt actaaaatgg aaacggaacc tccggcaaga 201 CTTACACAGG GACGATCGGA AACCGAACAT CCATTGGAGT GCTGCCTCAC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01678 Mean Expected Number 0.006 -strand -162 : -173 CAATAAAtTATT Totally 1 motifs of 1 different REs have been found Description of REs found 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FLA12 |LOCUS: AT5G60490 |PROD: fasciclin-like arabinogalactan-protein (FLA12) |complement(24342953..24343928) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.31 C - 0.22 1 aaaagtaaac agttacccct ttgcttatca atggcataaa ggcttctata 51 tatccaataa ttttgcctgt aggtaaagca attcatgtga taaaatcatc 101 ATTGGttatt aacaatcaac ttagttgtta aaatatgttg acctcttaac 151 caatcaattt cccccagttc aatataaccc cttactcttc atataaactc 201 ACACAAACAA AATATCAACA CTCTTGAAAA CAGAGCCATG GAACATTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01012 Mean Expected Number 0.003 -strand -127 : -133 ACCTACA Totally 1 motifs of 1 different REs have been found Description of REs found 930. Group TF: PtMYB1; PtMYB4 /AC: RSP01012//OS: Pinus sylvestris /GENE: PsGS1b/RE: GS1b AC box 1 (AC-I) /TF: PtMYB1; PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G60500 |PROD: the same as GENE |24345983..24347011 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +58 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.29 C - 0.22 1 aaatgacatt aaccggagac agtttatatt tgattaaacc agaaagaaag 51 tttaaacact aatccctaat cagcaatttt ctcccttccc ctaaaaatca 101 gccgtatcat atgctcattc catttgcatt ccccacagaa agaaaagaaa 151 aacttcattc tcttgtttat atttcactcg caacaaaaaa aacaaaaaaa 201 AACAAAGTGT GTTCTTAAAT TATCTTCTCT GATAACCAAA AAAGCCCTAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.006 +strand -174 : -164 TATTTGaTTAA AC RSP00441 Mean Expected Number 0.009 +strand +1 : +10 AACAAAGTGT AC RSP00860 Mean Expected Number 0.004 +strand -160 : -152 AGAAAGAAA AC RSP00860 Mean Expected Number 0.004 +strand -64 : -56 AGAAAGAAA AC RSP01000 Mean Expected Number 0.007 +strand -73 : -64 ATtCCCCACA AC RSP01642 Mean Expected Number 0.002 -strand -177 : -186 AAcTGTCTCC Totally 6 motifs of 5 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 921. Group TF: CBF /AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/RE: 3'-III element /TF: CBF 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G60510 |PROD: the same as GENE |24347888..24349437 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +59 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.06 T - 0.30 C - 0.27 1 ttaaccggat ctagacaata catatttgat taaatcaaga ataaagtcat 51 taatcacact aatcacccat tttctccctc cccctaaaaa ccagccgtat 101 catatgctca ttccatttgc attccctcca aaaagaaaaa aaaaaacttc 151 attccttttg tttataactt tatattcatt cattcactta caacaaaacc 201 AAAAACCCCA AACTTCTTGA TTCTCCCCTC CGATAACCAA AAAATCCCTA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00035 Mean Expected Number 0.008 -strand -41 : -47 CAAAAGG AC RSP00158 Mean Expected Number 0.005 +strand -178 : -168 TATTTGaTTAA AC RSP00613 Mean Expected Number 0.008 +strand -167 : -160 ATCAAGAA AC RSP00613 Mean Expected Number 0.003 -strand +21 : +14 ATCAAGAA AC RSP00778 Mean Expected Number 0.008 -strand -15 : -24 TGAATGAATG Totally 5 motifs of 4 different REs have been found Description of REs found 34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 589. Group RE: UN Z1 /AC: RSP00613//OS: Lycopersicon esculentum /GENE: rbcS2/RE: UN Z1 /TF: unknown 733. Group RE: Box III /AC: RSP00778//OS: Arabidopsis thaliana /GENE: AtS1/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: EMB2407 |LOCUS: AT5G60540 |PROD: SNO glutamine amidotransferase family protein |complement(24353849..24356028) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +155 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.38 C - 0.10 1 tatcatcatc tttaaaattt tgtaaaatag attacaattt ttcctagaga 51 atttgaatta taatcacata aaagcttaat aagtgtatat ttttgttttg 101 ttagcataat tgtttatggc tttttaATTG Aatttgttca caatagttat 151 taataccgtg atatctttat atttaaaaat gttattataa gaaaatatct 201 GAATAGAAAT CCAAATCGTG GGCAAAGAAA GAAACACAAA ACAAAATCGT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00860 Mean Expected Number 0.005 +strand +26 : +34 AGAAAGAAA AC RSP01150 Mean Expected Number 0.002 +strand -145 : -135 AATTATAATCA Totally 2 motifs of 2 different REs have been found Description of REs found 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G60680 |PROD: the same as GENE |24403371..24404202 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +102 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.23 1 gttttgaagt ggtaaagaat atgccaaaca cgacacatgt aatattctcc 51 aactccgaaa aaaaatccat cgcaattcgt ggcatttttc gacacttcat 101 taaaatctca tttaaaaccc aaggggtatt tacgtacttt cacaactgac 151 ggaaactaga agttaagggt cccttatcca gtttatccaa aaaacctgta 201 TAAAACCAAA GACTCCCTCA CGACTAATTC TTCTTCTTCA TTAGCAGATT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01014 Mean Expected Number 0.007 -strand +44 : +35 CtAATGAAGA AC RSP01469 Mean Expected Number 0.009 -strand -159 : -168 TtACATGTGT Totally 2 motifs of 2 different REs have been found Description of REs found 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CAAX amino terminal protease family protein |LOCUS: AT5G60750 |PROD: the same as GENE |24448117..24450586 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +181 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.33 C - 0.14 1 aataaattta ccaatgtgtt ctgaaggcaa ttcagctata aactataaaa 51 ggataatgaa caaattggtt tattcatcaa taaattggtt tattttggtt 101 taaacatcgg ttttgttcga tggtccggtt aagacggATT GTtaattatt 151 gtcgttgaaa attcaacaac ttttttttgg tgagaaaaac tgaaagacac 201 AAAATCAGTC ACGAAAACCC CCAAATCCAC AGATTAATTA GGGTTTTCGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 +strand +38 : +46 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 -strand +46 : +38 AAACCCTAA AC RSP00681 Mean Expected Number 0.008 -strand +40 : +32 TAATTAATC AC RSP01303 Mean Expected Number 0.004 -strand +47 : +38 AAAACCCTAA Totally 4 motifs of 4 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: OBP4 |LOCUS: AT5G60850 |PROD: Dof-type zinc finger domain-containing protein |24497675..24499094 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.30 C - 0.22 1 gaaatataac aaatcacttc aatgcccaaa gatattaata aataataatt 51 ccatggggcc aatttttgga ctcgaagcta acttctgaat acagccacac 101 tatgggATTG Taaaatgcaa aatatcacag gggtataatc gtagttccaa 151 gataaactgc ctgttcagac atatgaaaga tatgctttgt cagagtttca 201 GAACAAGTCT TTCCCATGCT CACCACTTCA CCTCTCTCTC TCTTTCTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.002 -strand +47 : +39 AGAAAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +43 : +35 AGAGAGAGA AC RSP00864 Mean Expected Number 0.001 -strand +41 : +33 AGAGAGAGA AC RSP00892 Mean Expected Number 0.004 -strand -163 : -171 TTAATATCT AC RSP01015 Mean Expected Number 0.008 +strand -31 : -22 CAtATGAAAG Totally 5 motifs of 4 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: COB |LOCUS: AT5G60920 |PROD: phytochelatin synthetase |complement(24528422..24531354) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +196 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.31 C - 0.19 1 aatatttttt ttctgttcat atatttttta tcgagaaaca attacttaaa 51 cataagaagc aagacaagaa ttaatgttct tattaacatg atgctaatat 101 aatcggaaaa caaaatcaaa tcatgataga agggtaaaat ggtcaaatca 151 tcgttcccgg ctcaaatttt actaaaacag ccactagcca gccagatccc 201 AAAAATGTCT CATTGCTTCT CTCGTTCTAA AAAAAATCTT GCTGCTATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.002 +strand -61 : -52 TGGTCAAaTC AC RSP01642 Mean Expected Number 0.005 +strand +3 : +12 AAATGTCTCa AC RSP01743 Mean Expected Number 0.000 -strand -52 : -64 GaTTTGACCATTT Totally 3 motifs of 3 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown 1550. Group TF: WRKY26 /AC: RSP01743//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY26) BS /TF: WRKY26 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT5G60960 |PROD: the same as GENE |complement(24545476..24547237) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.27 C - 0.25 1 gcgaagcgag cgctctacca tatgagctac acccccattt tgagtaaaaa 51 tgaaacagat acataataaa ttcaaattaa acaatcaaaa ggggcttaag 101 caaatcaagg cccgaaacga agcCCAATta ctcaagatgt tcctaaatcc 151 tgaactaggg ttttattcta tttccctttc tcactaactc tctagttacc 201 AATTTTCTCT CACTAAATCA GAAATGCCGC CGTCGTTACC GTCTCTGCAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00158 Mean Expected Number 0.007 -strand -95 : -105 gATTTGCTTAA AC RSP01091 Mean Expected Number 0.003 -strand -30 : -40 ATAGAATaAAA Totally 2 motifs of 2 different REs have been found Description of REs found 153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G60980 |PROD: the same as GENE |24560586..24563495 |SUPPORT | 9 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +628 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.30 C - 0.23 1 ttttatatac gacccaaaac cattctcaag atcaacacaa gtaaatccta 51 tttttgtaag tttctaataa ggaaatgaac aagaaagacc caataattca 101 agaatgatga agcccaaagt atgagtcttc ttgcttcttg ggccgaaccg 151 aactgaactg aactgaactg aactaaagct aaactaaaac taaagttggt 201 ACGGTTCCTT CTCTTCTCTC TCTCTCTTTC TCCGTCTGTC GCTGTCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00861 Mean Expected Number 0.002 -strand +31 : +23 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +27 : +19 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +25 : +17 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +23 : +15 AGAGAGAGA AC RSP00894 Mean Expected Number 0.008 +strand -106 : -99 AATTCAAG AC RSP01030 Mean Expected Number 0.007 -strand -136 : -143 AGAAACTT AC RSP01283 Mean Expected Number 0.000 -strand +30 : +14 GAaAGAGAGAGAGAGAA AC RSP01499 Mean Expected Number 0.006 +strand +28 : +37 TTCtCCGTCT Totally 8 motifs of 6 different REs have been found Description of REs found 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DEAD/DEAH box helicase, putative (RH10) |LOCUS: AT5G60990 |PROD: the same as GENE |complement(24563658..24566565) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +191 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.32 C - 0.19 1 cggtatcatt aacaaataaa aacaagcgat ctattttgtg tttacagctg 51 tagagtcata gagagttgtg taatttgtga agataacttt tcatcgacca 101 ctgtaatttg tgatatctag tccaaacttt aagaaggcag gcccatattt 151 ggcccaatta ggttattaaa ataacaacat aactaaaacc cttgatagct 201 AGAACTCGCT CTCTTTTCTC AGCCAACAAA CACTAGTCTC TTCTGATTTG 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SNAP33 |LOCUS: AT5G61210 |PROD: |24640549..24642857 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +704 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.44 C - 0.16 1 taaattgctc tattttcgtt agaaagtagt tactttttac ttttttagaa 51 gtttgatcta gaaaaaaaaa gaattatata tatgaccgtt ttagatttga 101 attaaatgat tttgttttat ttattaATTG Atccacgttc ctttctacaa 151 tttgtttttt ttttaatctc cttgataaat tttcgtcaac acatacccaa 201 AGACCTCCTT GTTGTACTCT CAAATTCTTG GGTCGTTCTG AGTCGTCTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.003 -strand -156 : -167 AAAAAGTAAAAA AC RSP00862 Mean Expected Number 0.007 -strand -55 : -63 AGAAAGGAA AC RSP01734 Mean Expected Number 0.006 +strand -69 : -63 TCCACGT Totally 3 motifs of 3 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: complex 1 family protein / LVR family protein |LOCUS: AT5G61220 |PROD: the same as GENE |complement(24642802..24644149) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +603 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.30 C - 0.25 1 agctcataca ccttcattaa aaaaggctgg cttatcacat attggcccaa 51 tttaacaggc ctttgtgtct agcccattct aaaaccggtt cttttcttac 101 TCAATctaaa attgatccgg ttcccaaatc agttttcccg gtttagtttt 151 gggtaaacct aaaagtttat ttattccccc gaacgaccca gcttgctgct 201 ATCAAAACCT TCGAACGGAG AACTTCAACG GCGAGCTCGG GAAATTAATA 251 C Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: pentatricopeptide (PPR) repeat-containing protein |LOCUS: AT5G61370 |PROD: the same as GENE |complement(24689022..24690883) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +186 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.33 C - 0.18 1 aatatgcatc ggcggccttc gagagtaatc attccggtta gtgacttata 51 agttataacc atcgtatctc acgattatcg gttttatccg gttctgaatt 101 tgaagcgtga tggaatgtaa aagactaaaa tgcccttttc agacacgcgg 151 gcaatgtttc caacaaatga atatatattg ttgttgagcc gagcgatctc 201 ATGAAATCTG CAAATTTAGG TCTTTTAATA GAAATCTGAA TTTCATGTTG 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00029 Mean Expected Number 0.008 +strand -85 : -78 TGTAAAAG AC RSP00523 Mean Expected Number 0.005 +strand -58 : -52 ACACGCG AC RSP01014 Mean Expected Number 0.007 +strand -37 : -28 CAAATGAAtA AC RSP01075 Mean Expected Number 0.001 -strand -50 : -59 CCCGCGTGtC Totally 4 motifs of 4 different REs have been found Description of REs found 28. Group RE: P-box 1 /AC: RSP00029//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 1 /TF: unknown 499. Group TF: DPBF-1; DPBF-2 /AC: RSP00523//OS: Daucus carota /GENE: Dc3/RE: E3-core /TF: DPBF-1; DPBF-2 939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF 993. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: ABRE II /TF: CpbZIP1; CpbZIP2 (short) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ANAC100 |LOCUS: AT5G61430 |PROD: no apical meristem (NAM) family protein |complement(24718348..24719956) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +177 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.07 T - 0.46 C - 0.21 1 attgggaaat acatatactc tttttattct tccaaattct taaaaaaaca 51 aaattttcgt tttgacgtaa ttttcttata attaagaaaa tgaaatatcG 101 CAATttcgtt tttctccact ccttgaaagt tccaaacttt atagtttcat 151 ttggctcttt tccctttata ttttcctctt catcttccta acctttctcc 201 CTAACTTCTC TGTTCATCTT TTTCTCTCTT TATTTATAAA TTTATCTGCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00112 Mean Expected Number 0.001 +strand -138 : -131 TGACGTAA AC RSP00329 Mean Expected Number 0.007 -strand -132 : -137 TACGTC AC RSP01458 Mean Expected Number 0.006 +strand +32 : +44 ATTTAtAAATTTA Totally 3 motifs of 3 different REs have been found Description of REs found 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 315. Group RE: ACGT motif /AC: RSP00329//OS: Arabidopsis thaliana /GENE: erd1/RE: ACGT motif /TF: unknown ||Identical REs AC: RSP01781 1328. Group RE: AT-rich ELS /AC: RSP01458//OS: Glycine max /GENE: BiP9/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: NADP-dependent oxidoreductase, putative |LOCUS: AT5G61510 |PROD: the same as GENE |complement(24754171..24756224) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +23 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.20 T - 0.34 C - 0.09 1 attcgattat tgttcaaatt attttgtaaa tttagccata gtttcatttt 51 ttcacttata tgtttgtgaa ataacgattt gtgtttggaa ttaaaattag 101 gggtgtttta taaatatagt aaaactagga tagtgataat gtaatatatt 151 gaacgttaaa ggacaaagat gggaaataga aaataaagtt aggaggcaga 201 GAAGAAATGG GGGCCATAAG AAAATGGCAG CATTGACTCT TCATCATCAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00085 Mean Expected Number 0.008 +strand -94 : -79 TTTaTAAATATAGTAA AC RSP00085 Mean Expected Number 0.008 -strand -79 : -94 TTACTATATTTAtAAA AC RSP01019 Mean Expected Number 0.009 -strand +44 : +38 ATGAAGA AC RSP01601 Mean Expected Number 0.003 +strand -151 : -144 TTTCACTT Totally 4 motifs of 3 different REs have been found Description of REs found 83. Group TF: AGL3 /AC: RSP00085//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AGL3-BE /TF: AGL3 944. Group TF: GAPF /AC: RSP01019//OS: Arabidopsis thaliana /GENE: GapB/RE: Gap box 1 /TF: GAPF 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G61530 |PROD: the same as GENE |24759278..24761985 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +578 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.28 C - 0.16 1 gctgtgaaat tagaagctta ggtcacaaat gagatactaa aagaagatga 51 aggaccattt ttgtgaagag aaaaacttat tacacgtggc accaacagaa 101 tatttattac cgtcacagtc cgtgacggag agaatatctg tgatttgcaa 151 agggaagaag actttcctat tcaaaattca aagccgactt tttttttacc 201 TAAACAGCAA TAATATCTTT TTTTCTCTGC TCCAGGGGGA AATTAAAAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.000 +strand -119 : -111 ACACGTGGC AC RSP00175 Mean Expected Number 0.001 +strand -118 : -111 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -120 : -111 tACACGTGGC AC RSP00219 Mean Expected Number 0.000 +strand -121 : -110 TtACACGTGGCA AC RSP00233 Mean Expected Number 0.007 -strand -70 : -79 TCTcCGTCAC AC RSP00445 Mean Expected Number 0.005 -strand +23 : +14 AAAAAAGAtA AC RSP00524 Mean Expected Number 0.009 +strand -119 : -113 ACACGTG AC RSP00682 Mean Expected Number 0.001 -strand -111 : -120 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 +strand -120 : -111 TACACGTGGC AC RSP00936 Mean Expected Number 0.000 -strand -110 : -121 TGCCACGTGTaA AC RSP00938 Mean Expected Number 0.000 -strand -110 : -121 TGCCACGTGtAA AC RSP01034 Mean Expected Number 0.005 +strand -117 : -111 ACGTGGC AC RSP01255 Mean Expected Number 0.002 +strand -119 : -112 ACACGTGG AC RSP01581 Mean Expected Number 0.000 +strand -120 : -108 TACACGTGGCACC AC RSP01584 Mean Expected Number 0.000 +strand -120 : -108 TACACGTGGCACC AC RSP01593 Mean Expected Number 0.000 +strand -120 : -109 TACACGTGGCAc Totally 16 motifs of 16 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 212. Group TF: HY5 /AC: RSP00219//OS: Arabidopsis thaliana /GENE: RBCS-1A/RE: G box-1 /TF: HY5 226. Group RE: LS5 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00233//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS5 /TF: TGA2 & NPR1/NIM1 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 865. Group TF: GBF /AC: RSP00936//OS: Lycopersicon esculentum /GENE: RbcS-3A/RE: G box /TF: GBF 867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1408. Group TF: GBF /AC: RSP01581//OS: Lycopersicon esculentum /GENE: rbcS-1/RE: G box /TF: GBF 1410. Group TF: GBF /AC: RSP01584//OS: Nicotiana tabacum /GENE: Ntss-23/RE: G box /TF: GBF ||Identical REs AC: RSP01587 1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G61590 |PROD: the same as GENE |complement(24781664..24782550) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.30 C - 0.22 1 gatcaagttg gcacaacttg aagggtcctg acaaaatatc ttaagttgcc 51 tccataaatg tttaatggat aagacttggc cccacagagt taaaccagag 101 agacacagag agagactttt gacacctcac ccatggctgc gttaacacat 151 gtttaggatt cctttcttta tatagccaac aatatcatca aaactttttc 201 TTCAAACACC ACTTGCAGTT TTTCTTATTC TCCTGTCTTG TCTAAAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.006 +strand +3 : +10 CAAACACC AC RSP00862 Mean Expected Number 0.002 -strand -34 : -42 AGAAAGGAA AC RSP00864 Mean Expected Number 0.000 +strand -94 : -86 AGAGAGAGA AC RSP01045 Mean Expected Number 0.000 -strand -173 : -184 GGACCCtTCAAG AC RSP01640 Mean Expected Number 0.004 -strand -93 : -102 CTgTGTCTCT Totally 5 motifs of 5 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 969. Group RE: box E /AC: RSP01045//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box E /TF: unknown 1460. Group RE: ARE /AC: RSP01640//OS: Nicotiana tabacum /GENE: Beta-glucanase/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ethylene-responsive element-binding family protein |LOCUS: AT5G61600 |PROD: the same as GENE |complement(24783612..24784656) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +62 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.23 C - 0.22 1 atagatgtcc acgtagagga ataagacaaa aagacaaaat aaagaaaaag 51 gacgaaatct aaagagagaa aataagtaac aagtccaaga aaaggtagta 101 tgatctttct cggtccgatc ctcgaaactc cctcgaaggc tcgaaccctc 151 tctttgtttt tttaccacta tataagaaag tccgattcct cgtcactctt 201 ATTCCCACTT CCACACATAC ACATATACAA CAGAGCAAGA GAGTCAATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00186 Mean Expected Number 0.000 -strand -185 : -195 CTACGTGGaCA AC RSP00189 Mean Expected Number 0.003 +strand -193 : -184 TCCACGTAGa AC RSP00280 Mean Expected Number 0.007 +strand -193 : -184 TCCACGTAGA AC RSP00421 Mean Expected Number 0.004 -strand -87 : -93 ACCGAGA AC RSP00445 Mean Expected Number 0.002 -strand -43 : -52 AAcAAAGAGA AC RSP01259 Mean Expected Number 0.002 -strand -185 : -192 CTACGTGG AC RSP01734 Mean Expected Number 0.009 +strand -193 : -187 TCCACGT Totally 7 motifs of 7 different REs have been found Description of REs found 180. Group RE: G-box motif /AC: RSP00186//OS: Oryza sativa /GENE: Amy3D/RE: G-box motif /TF: unknown 183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 402. Group RE: DRE1 /AC: RSP00421//OS: Zea mays /GENE: rab17/RE: DRE1 /TF: unknown 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G61605 |PROD: the same as GENE |complement(24785608..24786192) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.32 C - 0.18 1 agaaaaggtc atattactaa ggaatagcaa agaactaaaa ctaataaaac 51 aactagctct aagcgttttt ttgtgcatca ctataacaag agacgtgcac 101 ttttaattag tagtttagta ctatataaaa ccctattact tgtgtggatt 151 tcgaccaacc tataacaaac aacgtttcgg tataatttta agaagaatat 201 ATCACAACAA CAATGTCATC ATTATATTTT GCTATCCTTT GCCTCTTCAT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00057 Mean Expected Number 0.001 -strand -102 : -111 TgCACGTCTC AC RSP00428 Mean Expected Number 0.002 -strand -130 : -141 AAAAAACGcTTA Totally 2 motifs of 2 different REs have been found Description of REs found 56. Group TF: ABF /AC: RSP00057//OS: Zea mays /GENE: rab28/RE: ABRE B /TF: ABF 409. Group TF: Myb26 /AC: RSP00428//OS: Pisum sativum /GENE: Synthetic OLIGO/RE: Myb1 /TF: Myb26 ||Identical REs AC: RSP00919 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G61670 |PROD: the same as GENE |24800764..24803171 |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +91 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.11 T - 0.23 C - 0.24 1 acaacaacaa caaaaaaatc aattattcat caattatcca tttaaaaaaa 51 ttccaagtca gcaacaaaag aattctgcca ccacaagttt tctcaaaaca 101 aacctaaaca acaagacaag tgtgaaatta aaaaataata agcaCCAATa 151 cgaactcgcc acgtacatac agttgagcag agttgctctc tttcggtctc 201 GATTTCTCAA TTCTCACTAT ACAATACCGA CCATTTAAGA GCAGGCAAAA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00043 Mean Expected Number 0.002 -strand -36 : -43 TACGTGGC AC RSP00051 Mean Expected Number 0.006 +strand -43 : -34 GCCACGTACA AC RSP00052 Mean Expected Number 0.000 -strand -35 : -45 GTACGTGGCGa AC RSP00064 Mean Expected Number 0.003 -strand -34 : -43 tGTACGTGGC AC RSP00075 Mean Expected Number 0.003 -strand -35 : -44 GTACGTGGCG AC RSP00361 Mean Expected Number 0.008 -strand -5 : -10 CCGAAA AC RSP00744 Mean Expected Number 0.001 +strand +40 : +51 AGCAGGcAAAAC AC RSP01034 Mean Expected Number 0.004 -strand -37 : -43 ACGTGGC AC RSP01128 Mean Expected Number 0.004 +strand -31 : -14 CAGT-- ** bp --TGCT AC RSP01276 Mean Expected Number 0.003 -strand -35 : -42 GTACGTGG Totally 10 motifs of 10 different REs have been found Description of REs found 42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 51. Group RE: ABRE /AC: RSP00052//OS: Oryza sativa; /GENE: Rab-16A/RE: ABRE /TF: unknown 63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 346. Group RE: LTRE /AC: RSP00361//OS: Hordeum vulgare /GENE: blt4.9/RE: LTRE /TF: unknown 706. Group TF: GT-1 /AC: RSP00744//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 4 /TF: GT-1 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2 1175. Group RE: Box III /AC: RSP01276//OS: Petroselinum crispum /GENE: CHS/RE: Box III /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATIPK2BETA |LOCUS: AT5G61760 |PROD: inositol polyphosphate 6-/3-/5-kinase 2b (IPK2b) |complement(24830955..24832657) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +613 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.16 T - 0.38 C - 0.18 1 ggtaggaggt gacggctgaa ttttgtaaaa actgatgaag acgccctatt 51 tattcaaaac cggttatctc tacaatccgg ttcattcggg tccggtttag 101 tgatTCAATc tttttccata aagaatttat tcaattatta cttaaattaa 151 ttttctttat ttattcgtct tcccgacaag gttgcttggg aattttttgc 201 ATAGAACAAT CAACAATTAC ACTTATTTTG CTATCGTTTG AGCATCTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.008 -strand -12 : -21 CCAAGCAACc AC RSP00953 Mean Expected Number 0.006 +strand -69 : -61 CAATTATTA AC RSP01094 Mean Expected Number 0.004 -strand -64 : -75 TAATTGaATAAA Totally 3 motifs of 3 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 1012. Group TF: GT-1 /AC: RSP01094//OS: Pisum sativum /GENE: GS2/RE: GT-1 box /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: calnexin 1 (CNX1), identical to calnexin homolog 1 |LOCUS: AT5G61790 |PROD: the same as GENE |complement(24844328..24846981) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.30 C - 0.19 1 ctcaactagc tgttaaatgt gtacgtacgt atatagcaaa ataacagtgc 51 acgtagaaga gctcgctttt gaatgacgtg gcctgttatg attggttagc 101 ttcgcgtggc gagagatttg ATTGGtggaa acaacaaaat gacacactcg 151 accgggtcta cgggattgaa tatataattt attcagagaa accgaaaaat 201 ACATATCACT CTTTCTCCTT CACGAGGGAT TTTTGTTCCG ATCTACTTCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.001 +strand -127 : -119 TGACGTGGC AC RSP00214 Mean Expected Number 0.003 +strand -127 : -120 TGACGTGG AC RSP00215 Mean Expected Number 0.003 -strand -120 : -127 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -119 : -128 GCCACGTCAt AC RSP00280 Mean Expected Number 0.006 +strand -153 : -144 TgCACGTAGA AC RSP00819 Mean Expected Number 0.003 -strand -119 : -128 GCCACGTCaT AC RSP00821 Mean Expected Number 0.002 -strand -119 : -128 GCCACGTCaT AC RSP01034 Mean Expected Number 0.008 +strand -125 : -119 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -117 : -127 AgGCCACGTCA AC RSP01275 Mean Expected Number 0.004 -strand -119 : -128 gCCACGTCAT AC RSP01598 Mean Expected Number 0.007 -strand -57 : -64 TGTCATTT Totally 11 motifs of 11 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1 765. Group TF: ACE-binding TF /AC: RSP00819//OS: Arabidopsis thaliana /GENE: F3H/RE: ACE-core (AtF3H) /TF: ACE-binding TF 767. Group TF: ACE-binding TF /AC: RSP00821//OS: Arabidopsis thaliana /GENE: FLS/RE: ACE-core (AtFLS) /TF: ACE-binding TF 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: signaling molecule-related |LOCUS: AT5G61880 |PROD: the same as GENE |24867542..24868997 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +282 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.31 C - 0.20 1 gggatgatca aagtttaatt aatcttcaaa aaataaatag tggggccaaa 51 atagaatttc ttgaaaaact tgggggttgt acttcaatac ccacgtttta 101 taaatagtgg gcttaacttt ttacatgtag gcccaaatca tcttccgacg 151 tcggttaggg ttcttgttga tgatatcacc tgaaactctg agtttctctc 201 TCCGCCTCCG TCATAGAACG CAGAACTGGG TGGATCACCG TGGTCGTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00232 Mean Expected Number 0.008 +strand +8 : +17 cCGTCATAGA AC RSP00653 Mean Expected Number 0.002 +strand -7 : +4 TTCTCTCTCCg AC RSP00654 Mean Expected Number 0.005 -strand +32 : +23 CACCCAgTTC AC RSP00681 Mean Expected Number 0.003 +strand -185 : -177 TAATTAATC AC RSP00865 Mean Expected Number 0.001 -strand +3 : -6 GGAGAGAGA AC RSP00914 Mean Expected Number 0.004 -strand -59 : -68 GATGATTTGG AC RSP00915 Mean Expected Number 0.003 -strand -59 : -68 GATGATTTGG AC RSP01304 Mean Expected Number 0.003 -strand -37 : -46 AGAACCCTAA Totally 8 motifs of 8 different REs have been found Description of REs found 225. Group RE: LS7 /Group TF: TGA2 & NPR1/NIM1 /AC: RSP00232//OS: Arabidopsis thaliana /GENE: PR-1/RE: LS7 /TF: TGA2 & NPR1/NIM1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 650. Group RE: Box 4 /AC: RSP00681//OS: Pisum sativum /GENE: PSPAL2/RE: Box 4 /TF: unknown 801. Group TF: BPC1 /AC: RSP00865//OS: Arabidopsis thaliana /GENE: STK/RE: GA-6 /TF: BPC1 845. Group RE: B2 /Group TF: Opaque-2 /AC: RSP00914//OS: Zea mays /GENE: b-32/RE: B2 /TF: Opaque-2 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BON1 |LOCUS: AT5G61900 |PROD: copine BONZAI1 (BON1) |complement(24872887..24876559) |SUPPORT | 17 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +183 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.44 G - 0.16 T - 0.24 C - 0.16 1 gctctaatta aatatgtctg aggttaatct gatattgacc aacacgtcgt 51 ttactacaat aaatacaaaa aaaaaaaaga gagcgaattt ctcagaaaac 101 agcttaacgt ttcttggata tttcgtaagT CAATattaat caaatgaaaa 151 caaacaaaaa aaacctatat aagaaggaga cgctgtaaaa cagagcgagt 201 CAATTAAAAG AAAAGAAAAA GCGCGACTTA GACAAGTGGG TCCCATTTAC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00056 Mean Expected Number 0.003 -strand +40 : +31 cCCACTTGTC AC RSP00445 Mean Expected Number 0.009 +strand -128 : -119 AAAAAAGAGA AC RSP00522 Mean Expected Number 0.008 -strand +39 : +33 CCACTTG AC RSP00635 Mean Expected Number 0.001 +strand +39 : +46 GGTCCCAT AC RSP01086 Mean Expected Number 0.002 +strand -97 : -88 TTaACGTTTC Totally 5 motifs of 5 different REs have been found Description of REs found 55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3 425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 1004. Group TF: bZIP TF /AC: RSP01086//OS: Helianthus annuus /GENE: sHSP/RE: bZIP BS /TF: bZIP TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: BAG domain-containing protein |LOCUS: AT5G62100 |PROD: the same as GENE |24957622..24959200 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.07 T - 0.45 C - 0.21 1 aacaacaatc acattagctg tcactctttt ctttaacttt tttttctcat 51 tgtataaaat tttataaaac aataatctgc tttatatgat tcttatcttt 101 cttcttcttc cacgagttct gtccagaaac agaaacatta atttattaca 151 aaacaaagtg tatttacttc tctttgctca gacgtttctt ttttcttctt 201 CTTCTTCTTG ATCTTTTTCA GAAATCAACT TCATCTCATC ATTCCTCTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00304 Mean Expected Number 0.003 -strand -178 : -185 TGACAGCT AC RSP00441 Mean Expected Number 0.002 +strand -49 : -40 AACAAAGTGT AC RSP01016 Mean Expected Number 0.002 +strand -70 : -63 AGAAACAT AC RSP01093 Mean Expected Number 0.003 -strand -19 : -29 TCTgAGCAAAG Totally 4 motifs of 4 different REs have been found Description of REs found 291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP 421. Group TF: Dof1 /AC: RSP00441//OS: Zea mays /GENE: cyPPDK1/RE: box a /TF: Dof1 941. Group TF: AEF /AC: RSP01016//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 1 /TF: AEF 1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: embryo-specific protein-related |LOCUS: AT5G62210 |PROD: the same as GENE |complement(25003553..25004715) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +12 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.37 C - 0.22 1 cttcaaatac tcgacaatca cttttcttca tgaaagatat tttcgtagtc 51 tagtgcttct atatgcttgc tatatcacta tatgcttgtt tgtggattgt 101 gttgtgccaa gtgtaactga gtaagtatga aggtaagtta atataacaag 151 ggtaacttct caagttctct atttaaccct catctcccag atctcttttc 201 AAGAAGACAA CAATGGAGTG CTCTCTCTCA TCCATCCTCC TTCTCCTTGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00683 Mean Expected Number 0.002 +strand -95 : -86 GCCAAGTGtA AC RSP01065 Mean Expected Number 0.002 -strand +38 : +28 AGGATGGATGA Totally 2 motifs of 2 different REs have been found Description of REs found 652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G62575 |PROD: the same as GENE |25134714..25136118 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.33 C - 0.14 1 atttgaatca actgagattt tacattatct tctagagttt tgtgtttgag 51 attcaaagaa cactagactg agtatgaaga ttttgggtga gtaaaaacaa 101 tcagggtgat aatttatcat ACAATagttt tggggtcaaa atggaataat 151 tctagagtat agagcccatg ttgaaaagct cgaaaattct ttccaattcc 201 AGAAGAAAAG GTTTTGCTGT TTCCCTGTGA GCGATCTTCG ATACTCGTCT 251 G Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: basic helix-loop-helix (bHLH) family protein |LOCUS: AT5G62610 |PROD: the same as GENE |complement(25150125..25152014) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +188 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.41 C - 0.17 1 ttttgataga aattatttag gttattgcgc cataatatat cttttctatt 51 caattttgtt tctaaacgaa acgaaaattt taccattgta atattttttt 101 tataacagaa acggcaaaat atttgatgta agctgtgtaa ttaatgagat 151 tttctgaaag tattggtgat aaatcatctt ccattgcata ctagtggcgc 201 ATTATCACTA CCCACATCTG TCTTACCTTC TCCGATCTCT CTCTCTATTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00355 Mean Expected Number 0.005 +strand -98 : -91 TAACAGAA AC RSP00864 Mean Expected Number 0.002 -strand +46 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand +44 : +36 AGAGAGAGA Totally 3 motifs of 2 different REs have been found Description of REs found 340. Group RE: GARE2 /AC: RSP00355//OS: Oryza sativa /GENE: Rep-1/RE: GARE2 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: TUB2 |LOCUS: AT5G62690 |PROD: tubulin beta-2/beta-3 chain (TUB2) |25198645..25200955 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.32 C - 0.14 1 aatttgtatt ttaatatcaa tttgaatcaa actcatagtt ttaaaactca 51 attttgtaat cgaaaacaat tttttttttt ttttttaagg aaacttacac 101 agtagagaaa gaaacggacc attttaaaat tttgaatttc gtaaacaaac 151 aaaatagtag cccttattag ataattggga aaaaaaaaca agaaacaaac 201 ACAGAGAGGA GTGAGCAATA ATAAAAGCTC ACTCACTCAC ACTTTTATTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00756 Mean Expected Number 0.002 +strand +36 : +43 CTCACACT AC RSP00860 Mean Expected Number 0.009 +strand -95 : -87 AGAAAGAAA AC RSP01604 Mean Expected Number 0.004 -strand -98 : -105 ACTGTGTA Totally 3 motifs of 3 different REs have been found Description of REs found 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 1425. Group TF: SPF1 /AC: RSP01604//OS: Ipomoea batatas /GENE: Sporamin; beta-amylase/RE: SP8a /TF: SPF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein, predicted proteins |LOCUS: AT5G62750 |PROD: the same as GENE |complement(25220675..25221343) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +66 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.30 C - 0.14 1 acttaggggc tctatggatg agcttaaacg attgatcatt ccacagaatt 51 aaaattctaa agatagtaaa atatggaagc aacatacgaa actccataat 101 tctcgttata caagtaattt ctacggatgt gatcatttta tgtccaaaat 151 tagctgaaga tcctttgtaa taaaagggta attctgagtt ctacaagaaa 201 TATGTAAGAA AGTTTTCTAG ATTTAAGCAC TATCTAAGAA AAACAAAATC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00999 Mean Expected Number 0.005 +strand +27 : +37 gCACTATCTAA Totally 1 motifs of 1 different REs have been found Description of REs found 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DXR |LOCUS: AT5G62790 |PROD: |complement(25231351..25234665) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +147 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.34 C - 0.16 1 cttgtaatgc atatttctaa taataattat atttgacaaa ctatataatt 51 gatgatacag attctgctgt ttaatactct aaagaaatca aatagaaaat 101 gggaacatag taagactgga ttatttacca cttacaagtt gtcgttacct 151 taataaaaag gtccttgtta ctaaatgctc agcgaaatct ttaaaaaatg 201 ACAAAAATCT GTTGGGTACC ATTCAAATCC AGATTCCTTT CTTATCATCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00862 Mean Expected Number 0.001 -strand +42 : +34 AGAAAGGAA AC RSP01088 Mean Expected Number 0.001 +strand +14 : +21 GGGTACCA AC RSP01639 Mean Expected Number 0.009 +strand -64 : -55 AGTTGTCGTT Totally 3 motifs of 3 different REs have been found Description of REs found 798. Group TF: BPC1 /AC: RSP00862//OS: Arabidopsis thaliana /GENE: STK/RE: GA-3 /TF: BPC1 1006. Group TF: CRR1 /AC: RSP01088//OS: Helianthus annuus /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/RE: CuRE 2 /TF: CRR1 1459. Group RE: ARE /AC: RSP01639//OS: Nicotiana tabacum /GENE: PR-Q; ACS2/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: PEX14 |LOCUS: AT5G62810 |PROD: peroxisomal protein (PEX14) |25237391..25241015 |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +158 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.23 C - 0.22 1 taatcttaga attgggcata aattctggaa taatgggctc atttggtatt 51 agcgtccata cacattgtag gcccaataaa ataatagacc aagaaaaaac 101 taaaaaccgg acaacgccgt tatctcttct tcgtgtgacc accacacata 151 catacatacc actcaccgta ccaaaaagat tagaccaaca aaaaaaaaaa 201 AAAAAGGACC AGCTCAGATG AGTCTGGAGT TTCCAAGTTT AAAACCTCTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP01678 Mean Expected Number 0.006 +strand -127 : -116 CAATAAAATAaT Totally 1 motifs of 1 different REs have been found Description of REs found 1496. Group TF: AT-Hook TFs /AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/RE: JRE (Quant. Seq.) /TF: AT-Hook TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G63040 |PROD: the same as GENE |25305372..25307638 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +358 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.22 T - 0.27 C - 0.12 1 gaacagcaca agtacatttt tcactgattt gtgtaatcca aattcggaga 51 accaatgtcc aatggcaatg aataatgtca atttggttaa tctagattta 101 ttataaagta tagtgcaaaa tcgtagttta agagaacttg tggggTCAAT 151 tagtaaatat tatctagagc cggttaaaga agagaaactg aggaaactga 201 ATTTGACCAG AGAGTGTGTT CAAGCGAAGC GTTGTAGAAG AAAAGACAAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.007 -strand +8 : +2 GGTCAAA Totally 1 motifs of 1 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G63135 |PROD: the same as GENE |complement(25342205..25343705) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +39 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.32 C - 0.16 1 caaatttaag tcacgcgcgg aaggtaggga gtggcccaat gggtttcaaa 51 ttatgctttt gtaattttac aagcccaaat ttaacattta gtccctactc 101 atagtcaaaa ttatatttat ctttacCCAA Taacaatggg ctaaacagat 151 aaaagcccaa taataaatgc actgtgtttt tggtctttat ttacttttcc 201 ATCAATTTTC GTTAAGAGAG AAAAAGGAAG AGAAGAAGAA TGTTACAGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00296 Mean Expected Number 0.000 +strand -64 : -42 TGGGCT-- ** bp --AGCCCA AC RSP00296 Mean Expected Number 0.000 -strand -42 : -64 TGGGCT-- ** bp --AGCCCA AC RSP00459 Mean Expected Number 0.005 -strand -93 : -102 TTGACTAtGA AC RSP00751 Mean Expected Number 0.002 +strand -58 : -47 AAACaGATAAAA Totally 4 motifs of 3 different REs have been found Description of REs found 287. Group TF: At-TCP20 /AC: RSP00296//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II ("CT", comp) /TF: At-TCP20 437. Group TF: O2 /AC: RSP00459//OS: coix /GENE: alpha-coixin/RE: O2u /TF: O2 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: zinc finger (C2H2 type) family protein |LOCUS: AT5G63280 |PROD: the same as GENE |25384292..25387011 |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +19 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.27 C - 0.21 1 tgagagccca gcccaagata gttttgtaag tagagtgatt gggcctagcc 51 cagcccaata aagttttgta actatattag gcagagagag ttggacctag 101 aataatgtct caaaatccat ctgtttggat gcagtgatat ctccattccc 151 aattgcctaa acccaaatta gaaattttgc agaaatcaaa ttttgtcgct 201 AAAATCCCCA CACAGTTCGA TGGGAAGACT TTGGGAATCA CTGCCCGTGA 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: leucine-rich repeat transmembrane protein kinase |LOCUS: AT5G63410 |PROD: the same as GENE |complement(25412211..25415379) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +385 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.08 T - 0.34 C - 0.18 1 aaaataacta ttataagtgc ttgtttaata attgtaaaca ttatgcaaaa 51 agctttgtct tctttttata aagataataa gcataaaaca aagtcacttt 101 ctataggaat gagtgattta accccacaaa tttttaactc atgcatatca 151 aaaagaaaga ttcttgtata taacataaca ctactgttac tctctcactt 201 ACCTATTCTC ACTAACAAAC TCTGAACAAA CCAAAAAAAA CTCTTCTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.006 +strand +13 : +24 TAACAAACTCTg AC RSP00286 Mean Expected Number 0.002 +strand -8 : +3 TCTCACtTACC AC RSP00953 Mean Expected Number 0.007 -strand -167 : -175 CAATTATTA AC RSP01031 Mean Expected Number 0.009 -strand -37 : -44 AGAATCTT AC RSP01470 Mean Expected Number 0.005 +strand -62 : -53 TCATGCATaT Totally 5 motifs of 5 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2) ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G63510 |PROD: the same as GENE |25441226..25443067 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +54 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.37 C - 0.20 1 gttttgtttt tgaatctggt atcaatctgt agagtttgtt tgggatctgg 51 tttaatttgg ttttcaaatg ctacttgaca cctaatgtac atccacctaa 101 taagtgaaac gacgacgttt tactattATT GGgcctgtgg tccgttaaaa 151 agcccaatat gctgtatctc gtttaatttc aggtgaatct ttcgacgacc 201 ACTCTCTCTC TTTTCCTCTT TGCAAATCCT TGAAGAAATC CAAAATCCAT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00192 Mean Expected Number 0.002 -strand -160 : -171 aAACAAACTCTA AC RSP00559 Mean Expected Number 0.005 +strand -29 : -19 TtTAATTTCAG AC RSP00864 Mean Expected Number 0.003 -strand +11 : +3 AGAGAGAGA AC RSP01191 Mean Expected Number 0.001 -strand -61 : -68 CCACAGGC AC RSP01601 Mean Expected Number 0.003 -strand -92 : -99 TTTCACTT Totally 5 motifs of 5 different REs have been found Description of REs found 185. Group RE: AACA motif /AC: RSP00192//OS: Oryza sativa /GENE: Gt3/RE: AACA motif /TF: unknown 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1102. Group RE: A-box /Group TF: A factor /AC: RSP01191//OS: Nicotiana tabacum /GENE: Adhl/RE: A-box /TF: A factor 1422. Group RE: Inr /AC: RSP01601//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transferase family protein |LOCUS: AT5G63560 |PROD: the same as GENE |25466707..25468640 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +36 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.10 T - 0.33 C - 0.28 1 ttctaactcg tcacaacatg cctaatcatt ccaggttaat tttagagttt 51 tcaaatcgtc atattaacat gtgatcctga agactcttct cttctttctt 101 ctaccattag ctgaaatctt tacttgtacc ACAATtaacc tcaaacccta 151 gcccctaaat ccccctagaa atcaatccat cctcagttct ccaaaaagat 201 ATCTTTGGTT TTTCTTCACT GACAAAACCC CTAAAAATGG CCGACTCATT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00115 Mean Expected Number 0.005 +strand -36 : -26 cTAGAAATCAA AC RSP00947 Mean Expected Number 0.007 +strand -167 : -161 GGTTAAT AC RSP01776 Mean Expected Number 0.008 -strand -74 : -84 ACAAgTAAAGA Totally 3 motifs of 3 different REs have been found Description of REs found 113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1 876. Group TF: GT-2 /AC: RSP00947//OS: Oryza sativa /GENE: PHYA/RE: GT1-bx /TF: GT-2 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: flavonol synthase, putative |LOCUS: AT5G63590 |PROD: the same as GENE |complement(25474219..25475696) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.26 C - 0.18 1 ttggaaagtt ggttagaatt taatatcgag ggaagtgcca agcttttaga 51 aaaaataaaa taagttgaga agaaacgtga ttagagaaag taggtcatct 101 gactgtttaa attcaaatgt aacaacagac aacccctaac atcatcagtt 151 catcacctta ccctatttaa tattcatatc gcaacttctc tcctccgatc 201 AATAGATCCG TACTCGAAGC AGGAACGAGT GAAACTGAAA ACCATGGAGA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00259 Mean Expected Number 0.010 +strand -191 : -185 TGGTTAG Totally 1 motifs of 1 different REs have been found Description of REs found 252. Group TF: ATMyb2 /AC: RSP00259//OS: Arabidopsis thaliana /GENE: rd22/RE: ATMyb2 BS /TF: ATMyb2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: HEN3 |LOCUS: AT5G63610 |PROD: protein kinase, putative |complement(25480665..25483112) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +829 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.33 C - 0.15 1 taaaaaaaca caatttattt ctcttttgat aaaattatct ataaatcatt 51 aaatctttga tgagaaatat ccaatctact aatgtatatc gatgatttaa 101 atgaaattac ttatttgaac acaaaaataa atgaatttac taataaataa 151 atagcgtagt tggagcaagt ggctaaaaaa attacaaatc tagtttccat 201 TCTCAGCGTC GGCTGCTTGG AACGTCACCG TTTTCTGGAA AACGCAATCT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00359 Mean Expected Number 0.004 -strand +13 : +8 GCCGAC AC RSP00522 Mean Expected Number 0.004 -strand -29 : -35 CCACTTG AC RSP00840 Mean Expected Number 0.010 -strand -28 : -33 GCCACT AC RSP01654 Mean Expected Number 0.005 -strand +29 : +20 GGTGACGTTC Totally 4 motifs of 4 different REs have been found Description of REs found 344. Group TF: HvCBF1 /AC: RSP00359//OS: Hordeum vulgare /GENE: HVA1s/RE: GCCGAC motif /TF: HvCBF1 ||Identical REs AC: RSP00952 498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2 785. Group RE: CAT /AC: RSP00840//OS: Arabidopsis thaliana /GENE: H4A748/RE: CAT /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: oxidoreductase |LOCUS: AT5G63620 |PROD: the same as GENE |complement(25483354..25485659) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +137 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.33 C - 0.18 1 gaatgtttat agtaaatttt gtttatttta atttaaaatt ttttatataa 51 aaaactaaca attagcattc cgtcctaatt gtctatataa tatcttaatt 101 tcgtagataa gatatacacg tggatgttga cccaaggaat acatccttaa 151 agtgatacaa atcatccccg cacgcaatat cggcgcgtga ataccacctg 201 CGCAGACTCA TTTCGTAAAT TCAGATTAAG CGCGTCGTGT AATTCAATCA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.002 -strand -77 : -86 TCCACGTGTa AC RSP00524 Mean Expected Number 0.006 +strand -85 : -79 ACACGTG AC RSP00933 Mean Expected Number 0.005 +strand -169 : -157 TTTAaAATTTTTT AC RSP00974 Mean Expected Number 0.001 +strand -86 : -77 TACACGTGgA AC RSP01053 Mean Expected Number 0.003 +strand -95 : -87 GATAAGATA AC RSP01255 Mean Expected Number 0.001 +strand -85 : -78 ACACGTGG AC RSP01559 Mean Expected Number 0.008 -strand +35 : +30 ACGCGC AC RSP01559 Mean Expected Number 0.008 -strand -13 : -18 ACGCGC AC RSP01722 Mean Expected Number 0.000 -strand -76 : -87 ATCCACGTGTaT AC RSP01734 Mean Expected Number 0.005 -strand -77 : -83 TCCACGT Totally 10 motifs of 9 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 973. Group TF: HvMCB1 /AC: RSP01053//OS: Hordeum vulgare /GENE: ITR1/RE: GATA-core /TF: HvMCB1 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1396. Group TF: AtCAMTA1; AtCAMTA5 /AC: RSP01559//OS: Arabidopsis thaliana /GENE: AVP1/RE: AtCAMTA1/AtCAMTA5 BS /TF: AtCAMTA1; AtCAMTA5 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: serine/threonine protein kinase, putative |LOCUS: AT5G63650 |PROD: the same as GENE |complement(25498743..25500945) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +224 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.30 C - 0.22 1 tactaaccaa cttatttatt ttgaacctta gtaaataatt attggcataa 51 tctaacgagt gagaataatt aattagtact tagtatccaa ttaaagagaa 101 taattaataa ccgttggATT GAagtgaagg tggtcatcgg aactcgagca 151 acctcttcac gtgcttaact tccataccca tctcctccgt ttactcctcc 201 ATCATCGATA TATACACCGA TACATACACC GACACATACG CATGAGTGTA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00817 Mean Expected Number 0.003 +strand -45 : -36 TtCACGTGCT AC RSP01046 Mean Expected Number 0.000 -strand -80 : -88 CAATCCAAC Totally 2 motifs of 2 different REs have been found Description of REs found 763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF 970. Group RE: NON /AC: RSP01046//OS: Nicotiana tabacum /GENE: histone genes (oligo)/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transcription initiation protein-related |LOCUS: AT5G63670 |PROD: the same as GENE |25505207..25506644 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +31 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.21 T - 0.24 C - 0.15 1 ttgaaatttg cggatttaga ttgattcaag ttcaaaaaat ttgaaaatgt 51 ccaaagtcaa catttgacca agaagtcgag tgttgttttt aatattgatg 101 gctaatatga ttttaaagcc catacataaa agcccaaata cggcCCAATa 151 aaggaaaaga ctcctctggg aagaagaact aaaaaagaaa ctgggatttt 201 GGAAGAAGTG GTCGAGAGAA AACAAACGAT AATGGGAAGC GCACCAGCTC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00383 Mean Expected Number 0.006 -strand -132 : -138 GGTCAAA Totally 1 motifs of 1 different REs have been found Description of REs found 368. Group TF: WRKY1 /AC: RSP00383//OS: Petroselinum crispum /GENE: WRKY1/RE: WA /TF: WRKY1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ANAC102 |LOCUS: AT5G63790 |PROD: no apical meristem (NAM) family protein |complement(25543735..25545239) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +0 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.27 C - 0.25 1 aggttcgtgc ggctgacgga agcaatgaca tcatcacata ctctgtatgt 51 cgatcatcca attagtccaa gccacgtgta aacctcagct ggctgcgcgg 101 tcaacgttga aaaagaaaaa ggttggtttt tatcacacgt gtccgaaaga 151 aaactacaca cgtgtggttc atgaacctcc ccttcgttta taaaagctcc 201 ATGGACTTTG CTCTCTTCTC CTCGATTTCA ATCTTTGAGA TAAACCACAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00002 Mean Expected Number 0.001 -strand -122 : -130 ACACGTGGC AC RSP00049 Mean Expected Number 0.005 +strand -67 : -58 CaCACGTGTC AC RSP00175 Mean Expected Number 0.002 -strand -123 : -130 CACGTGGC AC RSP00204 Mean Expected Number 0.003 -strand -121 : -130 tACACGTGGC AC RSP00682 Mean Expected Number 0.003 +strand -130 : -121 GCCACGTGtA AC RSP00783 Mean Expected Number 0.000 -strand -121 : -130 TACACGTGGC AC RSP00941 Mean Expected Number 0.007 +strand +26 : +33 TTTCAATC AC RSP01103 Mean Expected Number 0.007 +strand -121 : -114 AAACCTCA AC RSP01152 Mean Expected Number 0.004 +strand -67 : -58 CACACGTGtC AC RSP01255 Mean Expected Number 0.003 -strand -122 : -129 ACACGTGG AC RSP01256 Mean Expected Number 0.003 +strand -66 : -59 ACACGTGT AC RSP01256 Mean Expected Number 0.003 +strand -43 : -36 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -36 : -43 ACACGTGT AC RSP01256 Mean Expected Number 0.003 -strand -59 : -66 ACACGTGT AC RSP01454 Mean Expected Number 0.007 -strand -74 : -80 ACCAACC AC RSP01469 Mean Expected Number 0.008 +strand -68 : -59 TCACAcGTGT AC RSP01594 Mean Expected Number 0.007 -strand +33 : +26 GATTGAAA Totally 17 motifs of 14 different REs have been found Description of REs found 2. Group RE: ABRE-3 /AC: RSP00002//OS: Brassica napus /GENE: Oleosin/RE: ABRE-3 /TF: unknown 48. Group RE: G-box /AC: RSP00049//OS: Hordeum vulgare /GENE: HVA22/RE: G-box /TF: unknown 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 738. Group TF: G-box binding TF /AC: RSP00783//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 7 /TF: G-box binding TF 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1067. Group TF: EmBP-1 (+VP1) /AC: RSP01152//OS: Zea mays /GENE: Em/RE: Em1b /TF: EmBP-1 (+VP1) 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2) 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SNF7 family protein, contains Pfam domain |LOCUS: AT5G63880 |PROD: the same as GENE |25580964..25583175 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +152 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.40 C - 0.13 1 ggttacttat cgatttcagc ttgattttgt ttacggtact atccaaggaa 51 tttttgtttg gtttcgattt ttttattttt cagtgtggat gaaatcaaac 101 cgactaaaat cggttcgata tcgattttta cattttttcg gtccggttca 151 tgcttttcct ctattttgag atatttgtac tgaaaagcag aaagagagaa 201 GAAACACAAA AATTGGACTT TGGTTTGAAA TTGGCGACAT TTTTGGGAAA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00422 Mean Expected Number 0.008 +strand -102 : -97 ACCGAC AC RSP00861 Mean Expected Number 0.001 +strand -12 : -4 AGAAAGAGA AC RSP01642 Mean Expected Number 0.005 -strand +42 : +33 AAATGTCgCC Totally 3 motifs of 3 different REs have been found Description of REs found 403. Group RE: DRE2 /AC: RSP00422//OS: Zea mays /GENE: rab17/RE: DRE2 /TF: unknown ||Identical REs AC: RSP00951 RSP01036 RSP01548 RSP01564 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 1462. Group RE: ARE /AC: RSP01642//OS: Nicotiana tabacum /GENE: WIPK/RE: ARE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G64080 |PROD: the same as GENE |complement(25662489..25663954) |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +90 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.22 C - 0.26 1 gtaaaaactt gaaaaggaag agagaaaaaa agaaagaagg aaagatgaaa 51 gggcaggtct cttggtgaaa gaccccacga tcacgcatcc atatggaaaa 101 tgcaaagaga cacgtatacc taaacgtcat cgtttttgca cattacccca 151 aaaccccaaa accgacctac aaaatccctt cttcttcctc ttcactcttt 201 CTCATTTTCC ACCATTAAAA AACCTCTCTA CTCTCTCCTC AAAAACTCAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00068 Mean Expected Number 0.007 +strand -92 : -83 GACACGTAtA AC RSP00070 Mean Expected Number 0.004 -strand -85 : -92 TACGTGTC AC RSP00653 Mean Expected Number 0.001 +strand +29 : +39 TaCTCTCTCCT AC RSP00997 Mean Expected Number 0.008 -strand -70 : -79 GATGACGTTT AC RSP01035 Mean Expected Number 0.010 -strand -86 : -92 ACGTGTC AC RSP01205 Mean Expected Number 0.006 -strand -184 : -193 CCTTTTCAAG AC RSP01288 Mean Expected Number 0.006 -strand -84 : -91 ATACGTGT AC RSP01654 Mean Expected Number 0.010 -strand -70 : -79 GATGACGTTT Totally 8 motifs of 8 different REs have been found Description of REs found 67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown 69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1 627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64160 |PROD: the same as GENE |25688156..25689689 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +11 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.32 G - 0.20 T - 0.30 C - 0.18 1 atttcaaggt ttttgccgca caaacagacc aaatcggttt ataaatatat 51 taccaactaa accggataat ccggttctgt ttttagccgg gttttgaacc 101 gaggATTGAa ataagattaa caaggaatat aaggggctaa agcataaata 151 aagaaaagtt cttcttattt ttgtttgcgg ctccgataga tctttggagc 201 AACGAACAAA CATGAGCTTG ACGCTGCTTC AAGGCTATTC TTCTGCTGAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00166 Mean Expected Number 0.001 +strand -189 : -182 TTTGCCGC AC RSP00727 Mean Expected Number 0.009 +strand +16 : +22 GCTTGAC AC RSP00941 Mean Expected Number 0.010 -strand -90 : -97 TTTCAATC AC RSP01594 Mean Expected Number 0.010 +strand -97 : -90 GATTGAAA Totally 4 motifs of 4 different REs have been found Description of REs found 160. Group TF: E2F /AC: RSP00166//OS: Nicotiana tabacum /GENE: RNP2/RE: E2Fb /TF: E2F 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64180 |PROD: the same as GENE |25694306..25695518 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.19 T - 0.33 C - 0.20 1 acgagagagc agtgtgagat cctatcagtt ccagttttat tattggtaca 51 cgtcattagt accttctcga aactgggcac gcctcatctt cttattggct 101 tacatcgtaa tgatgacatc agcctttatt tacgtataac aaattaccat 151 gcggttaaaa aaaacaatag ttatatgggc cgaagaaagc ccaaagaatc 201 TTTAGTTGTT TTTCCGATCG ATCTGCGAGT CGAGTAGTTT TTTTATTTGC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.008 -strand -158 : -166 ATAATAAAA AC RSP00746 Mean Expected Number 0.001 +strand -52 : -41 ATGcGGTTAAAA AC RSP00756 Mean Expected Number 0.003 -strand -183 : -190 CTCACACT AC RSP00979 Mean Expected Number 0.010 -strand -23 : -32 CCATAtAACT AC RSP01031 Mean Expected Number 0.007 +strand -6 : +2 AGAATCTT AC RSP01258 Mean Expected Number 0.003 -strand -146 : -153 TGACGTGT AC RSP01275 Mean Expected Number 0.004 +strand -154 : -145 TaCACGTCAT AC RSP01654 Mean Expected Number 0.007 -strand -144 : -153 AATGACGTGT AC RSP01776 Mean Expected Number 0.009 -strand +9 : -2 ACAAcTAAAGA Totally 9 motifs of 9 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 708. Group TF: GT-1 /AC: RSP00746//OS: Nicotiana plumbaginifolia /GENE: Cab-E/RE: box 6 /TF: GT-1 718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown 901. Group RE: Box I /AC: RSP00979//OS: Glycine max /GENE: vspA/RE: Box I /TF: unknown 956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G64240 |PROD: the same as GENE |25712846..25715046 |SUPPORT | 3 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +216 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.31 C - 0.12 1 attattcgtt tgtgttatga aatataaatg cttaaatatt atcaaaagtc 51 atacttttta attattattt tccaaatgat aagcttatat aataagttta 101 atggaccaac ccaaaATTGT aaggaagtga ctttagtgga atagatacgc 151 gatagacttt gacaagaaaa aaaaaaaaaa aaagatacgc aacagagttc 201 AATAATAAAA TAAAATAAAA ACTTTCAAAG AATCAAATTC CGTTCCGAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00270 Mean Expected Number 0.004 -strand -80 : -90 TACAaTTTTGG AC RSP01454 Mean Expected Number 0.004 +strand -96 : -90 ACCAACC AC RSP01600 Mean Expected Number 0.009 +strand +23 : +30 TTTCAAAG Totally 3 motifs of 3 different REs have been found Description of REs found 262. Group TF: OBP1 /AC: RSP00270//OS: Arabidopsis thaliana /GENE: GST6/RE: OBP1 BS /TF: OBP1 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 2-nitropropane dioxygenase family / NPD family |LOCUS: AT5G64250 |PROD: the same as GENE |complement(25714450..25716438) |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +267 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.29 C - 0.19 1 tcggttctaa tgcgttgcat aataaaatcc ccagtcagac gtcagctaac 51 cgagcaacat aatgggccct tttaatatct cagcccatta gtttcaatca 101 aaaacCCAAT aaagtagttt cttaacagtc ttttaagaag aagaatataa 151 ccgataaatc gaattttcct ggaaaaagtt actcgaattt cgaacatcct 201 GTGTGTTGTG AGCTGATCGA AGAGTATAGA GGATCGATGA ATGTTTCCAG 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00792 Mean Expected Number 0.008 +strand -151 : -142 CCgAGCAACA AC RSP00892 Mean Expected Number 0.004 +strand -129 : -121 TTAATATCT AC RSP00941 Mean Expected Number 0.007 +strand -109 : -102 TTTCAATC AC RSP01065 Mean Expected Number 0.001 +strand +30 : +40 AGGATCGATGA AC RSP01594 Mean Expected Number 0.007 -strand -102 : -109 GATTGAAA AC RSP01692 Mean Expected Number 0.005 -strand +21 : +14 TTCGATCA Totally 6 motifs of 6 different REs have been found Description of REs found 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 824. Group TF: Dof family /AC: RSP00892//OS: Solanum melongena /GENE: SmCP/RE: EE 2 /TF: Dof family 870. Group TF: GBF /AC: RSP00941//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box I /TF: GBF 984. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01065//OS: Arabidopsis thaliana /GENE: At5g64250/RE: Fungus RE /TF: homeodomain TF 1416. Group RE: Box I /AC: RSP01594//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box I /TF: unknown 1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FKBP12 |LOCUS: AT5G64350 |PROD: FK506-binding protein (FKBP12) / immunophilin |complement(25751824..25753297) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +81 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.30 C - 0.14 1 gggcttgaat ttgatgaatc cgaagtaaaa aatagttttg ggctagattc 51 tgcttcttaa ttcggtctgg tacagtatta tattatccac ctttgagaaa 101 gaataaataa tgggcctaaa tttcatcgaA TTGGgttttg gattattgtt 151 aggcccagat agggtttaga tcaaacagca tgataattga taaataacaa 201 AATATATAGG CAAAAGCTAC TCCGAGATTC GAAGCTGCAA AGAACGCGAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00093 Mean Expected Number 0.007 +strand -117 : -111 TATCCAC AC RSP00868 Mean Expected Number 0.007 +strand -125 : -114 TATTATATTATc AC RSP00894 Mean Expected Number 0.007 -strand -190 : -197 AATTCAAG AC RSP01134 Mean Expected Number 0.004 -strand -128 : -137 GTaCCAGACC Totally 4 motifs of 4 different REs have been found Description of REs found 91. Group RE: TATCCAC box /AC: RSP00093//OS: Hordeum vulgare /GENE: Amy pHV19/RE: TATCCAC box /TF: unknown ||Identical REs AC: RSP01050 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: fructose-1,6-bisphosphatase family protein |LOCUS: AT5G64380 |PROD: the same as GENE |25758475..25760424 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +93 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.33 C - 0.18 1 gtgaatcttc aaagaagaaa agtccaataa tcaatgttca atcatttgtg 51 taaatgtaac ggtaactgaa aatctgtttg tagctgaata tatgttgatg 101 ccaaaaggca gctcctttgc ttttataatc gaaccggttt ataATTGAac 151 cggaatccaa ttccaaaaat aaccgtaatc agatactatg aactgtgggg 201 TTTTCTACTC CTCGTCATCT TCTATTCGTT ATCCGTTTTG AAGCGTACTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00440 Mean Expected Number 0.001 -strand -176 : -184 GGACTTTTC Totally 1 motifs of 1 different REs have been found Description of REs found 420. Group RE: -NF-kB-box /AC: RSP00440//OS: Arabidopsis thaliana /GENE: PR-1/RE: -NF-kB-box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G64560 |PROD: the same as GENE |complement(25823995..25826867) |SUPPORT | 12 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +246 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.29 C - 0.17 1 gaatttaggt gattcgactc aaatatgaac aacatttacc agaaatcagg 51 gttattatta ccggtttatt gcggtttaca ttttaaatat aaataagatt 101 cacctctaac agaatatatc acgttttcct ttttttctga aactgtaaaa 151 ctctctcaca aagcaaaaaa accaaaccta aacaaaaatc tagaaagaaa 201 GATTTCCGAA AATCTTTTTA ATGAAAAAAG AGCAGACAGG ACGAGAATTC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00593 Mean Expected Number 0.004 -strand -100 : -108 GAATCTTAT AC RSP00860 Mean Expected Number 0.008 +strand -9 : -1 AGAAAGAAA Totally 2 motifs of 2 different REs have been found Description of REs found 569. Group RE: GATA/2 B /AC: RSP00593//OS: Lycopersicon esculentum /GENE: rbcS1/RE: GATA/2 B /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L17 family protein |LOCUS: AT5G64650 |PROD: the same as GENE |complement(25856586..25858035) |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +34 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 1 aattatgaat catcttaaat cctaaatttc attctaatat tcaaaaacaa 51 tttttttcta tgacacaaac ggcttatttt tttattgggc tacaaatgac 101 acaagcgctt tcatttgATT GGgctaaaaa cgaaaagatc cggcccattg 151 agctgggttt atcgttcacc tttgtaagtt tatttcttct tcatcttccg 201 AATCGCATTC TCCGATCGAA TCGCCGACGG AGAAATGACC AAGTTCAGGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00467 Mean Expected Number 0.003 -strand +41 : +32 TGGTCAtTTC AC RSP00468 Mean Expected Number 0.001 -strand +42 : +32 TTGGTCAtTTC AC RSP01015 Mean Expected Number 0.001 -strand -84 : -93 CAAATGAAAG AC RSP01205 Mean Expected Number 0.008 +strand -32 : -23 CCTTTGTAAG AC RSP01482 Mean Expected Number 0.001 +strand +32 : +42 GAAaTGACCAA AC RSP01598 Mean Expected Number 0.007 -strand -100 : -107 TGTCATTT Totally 6 motifs of 6 different REs have been found Description of REs found 445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown 446. Group RE: ERE2 /AC: RSP00468//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE2 /TF: unknown 940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1350. Group RE: ERE2 /AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/RE: ERE2 /TF: unknown ||Identical REs AC: RSP01483 1419. Group RE: Inr /AC: RSP01598//OS: Spinacia oleracea /GENE: RPL21/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L15 family protein |LOCUS: AT5G64670 |PROD: the same as GENE |complement(25869493..25871215) |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +109 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.21 T - 0.28 C - 0.18 1 agagagagaa tcgttaccgg agaaatagca attcggcgat gacctaaaac 51 ccttcccaat ttatttctct gttttatttt attttgaagt tcactcaaaa 101 cgacatagtt tagtgaATTG Gcgggtggaa aagacatttg ggccataatg 151 ggcctttaag tgacagtact gaagaagaaa gcaatggtga tggatgattc 201 AGTAGCTCTT CACTGAAATC TCATAAACCC TAAATCCCCA AAATGGAATA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +33 : +25 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +25 : +33 AAACCCTAA AC RSP00864 Mean Expected Number 0.002 +strand -200 : -192 AGAGAGAGA AC RSP01214 Mean Expected Number 0.004 -strand +46 : +37 CCATTTTGGG AC RSP01303 Mean Expected Number 0.003 +strand +24 : +33 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand +24 : +33 TaAACCCTAA Totally 6 motifs of 6 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64780 |PROD: the same as GENE |complement(25917785..25919351) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +170 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.28 C - 0.18 1 tgaactcaaa atatgtgatt agctactatt ttcattgaag atccacaaat 51 tattaacggt ttggttctac acataaaaaa aaaaattcgt ggaccaaaga 101 aaaaaaaaac agtccaaagc ttcaaaattt ttgtctgcaa agCCAATagt 151 ggggcccagg tttttagata tatgggaccc ttaaaagtag catgaaagcc 201 ACGTGGCAGA ATCTCTACAG AGTAAATGCC ACAAGTCTTT CTTCTTCTTC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00063 Mean Expected Number 0.000 +strand -3 : +7 GCCaCGTGGC AC RSP00063 Mean Expected Number 0.001 -strand +7 : -3 GCCaCGTGGC AC RSP00073 Mean Expected Number 0.001 +strand -3 : +7 GCCACGTGGC AC RSP00073 Mean Expected Number 0.001 -strand +7 : -3 GCCACGTGGC AC RSP00153 Mean Expected Number 0.001 +strand -2 : +8 CCACGTGGCa AC RSP00153 Mean Expected Number 0.001 -strand +6 : -4 CCACGTGGCt AC RSP00175 Mean Expected Number 0.001 +strand -1 : +7 CACGTGGC AC RSP00175 Mean Expected Number 0.001 -strand +5 : -3 CACGTGGC AC RSP00204 Mean Expected Number 0.001 +strand -3 : +7 GcCACGTGGC AC RSP00204 Mean Expected Number 0.001 -strand +7 : -3 GcCACGTGGC AC RSP00635 Mean Expected Number 0.001 -strand -22 : -29 GGTCCCAT AC RSP00682 Mean Expected Number 0.001 +strand -3 : +7 GCCACGTGGc AC RSP00682 Mean Expected Number 0.001 -strand +7 : -3 GCCACGTGGc AC RSP00718 Mean Expected Number 0.001 +strand -2 : +6 CCACGTGG AC RSP00718 Mean Expected Number 0.001 -strand +6 : -2 CCACGTGG AC RSP01034 Mean Expected Number 0.004 +strand +1 : +7 ACGTGGC AC RSP01034 Mean Expected Number 0.004 -strand +4 : -3 ACGTGGC AC RSP01635 Mean Expected Number 0.001 +strand -66 : -56 CTGCAAAGCCA AC RSP01726 Mean Expected Number 0.000 -strand +8 : -4 TGCCACGTGGcT Totally 19 motifs of 11 different REs have been found Description of REs found 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274 149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154 169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570 197. Group TF: ABI5 /AC: RSP00204//OS: Arabidopsis thaliana /GENE: AtEm6/RE: ABRE/6.2 /TF: ABI5 ||Identical REs AC: RSP01151 611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown 651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3 683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64850 |PROD: the same as GENE |25938670..25940580 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +141 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.31 C - 0.18 1 tactaaacga cgtcatttaa caggaaatga gagcaaagct gacgcggatt 51 aagcgtgtgt gcgtgtccga acgaatggca gtatcgtaat taatgcacaa 101 aagctaacct tttcccgaag cagaaaaaaa caaaataaaa caaaaatatt 151 tttgatatgt tgtgtacagt atagttgtat caccaccaat cgacctgtta 201 CTTTGCTGTA TTAAATTTTG GTATACTTTT TCTTTCGCTT ATAAATTGCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00230 Mean Expected Number 0.009 +strand -100 : -91 AAgCTAACCT AC RSP00253 Mean Expected Number 0.001 -strand -151 : -158 AATCCGCG AC RSP00447 Mean Expected Number 0.004 -strand +7 : -3 AGCAAAGtAA AC RSP00897 Mean Expected Number 0.000 +strand -195 : -183 AAcGACGTCATTT AC RSP00897 Mean Expected Number 0.000 -strand -184 : -196 AATGACGTCgTTT AC RSP01732 Mean Expected Number 0.000 -strand -184 : -195 AATGACGTCGTT Totally 6 motifs of 5 different REs have been found Description of REs found 223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1 246. Group RE: Oct (r) /AC: RSP00253//OS: Triticum aestivum /GENE: H3/RE: Oct (r) /TF: unknown ||Identical REs AC: RSP01503 RSP01504 427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1 828. Group RE: PAL04 /AC: RSP00897//OS: Bean yellow dwarf virus (Mastrevirus) /GENE: Intergenic Region/RE: PAL04 /TF: unknown 1540. Group RE: C-box /Group TF: STF1/HY5 /AC: RSP01732//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: C-box /TF: STF1/HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64870 |PROD: the same as GENE |complement(25946764..25948610) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +76 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.09 T - 0.38 C - 0.15 1 attatattat cttttaacat tcaaatttag ccaaaacagt tatagaattt 51 tgtaaataac cgcgtttcaa tgaaatttcg tagaaagtag aaaagaatat 101 aaaagcttaa ttcaagagaa tatttttttt ttattttttt ttatttttta 151 tttacgcgta ttaaaaactt gtatataagt taaatccttt cttatgatcc 201 TCTCCACAAA CAAACTTGTA CTAGAAAAAT CCCTAAATCT CAACAAAACC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00894 Mean Expected Number 0.010 +strand -92 : -85 AATTCAAG AC RSP01733 Mean Expected Number 0.002 +strand -141 : -136 CCGCGT Totally 2 motifs of 2 different REs have been found Description of REs found 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G64905 |PROD: the same as GENE |25956800..25957285 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.26 C - 0.24 1 gttattttat tcacttcaac ataaaaccaa ataagcatta tcggttttca 51 acataccggc accaactttt ccaaagtctg tatgtaccta acaaaaccgg 101 tttatcatag aaacggtcaa cacaccaaaa atagttgacc aacaactacc 151 caagtgatat ccctttaaaa ggagtcgcat atgtgttacc aagttccatc 201 ATCAACCTAA TAACACACAA CACTAAATCT CTTTCCCAAA AAAAGATTAA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00131 Mean Expected Number 0.005 -strand -14 : -20 AACACAT AC RSP00917 Mean Expected Number 0.007 -strand -181 : -190 GTTGAAGTGA AC RSP01205 Mean Expected Number 0.005 -strand -29 : -38 CCTTTTAAAG AC RSP01209 Mean Expected Number 0.002 -strand +45 : +36 CTTTTTTTGG AC RSP01740 Mean Expected Number 0.000 +strand -69 : -57 TAGTTGACCAAcA Totally 5 motifs of 5 different REs have been found Description of REs found 129. Group RE: CACA box /AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: CACA box /TF: unknown 848. Group TF: Opaque-2 /AC: RSP00917//OS: Zea mays /GENE: b-32/RE: B5 /TF: Opaque-2 1115. Group RE: EM2 /Group TF: MADS box TFs /AC: RSP01205//OS: Arabidopsis thaliana /GENE: AtCRC/RE: EM2 /TF: MADS box TFs 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1547. Group TF: WRKY11 /AC: RSP01740//OS: Arabidopsis thaliana /GENE: SIRK/FRK1 (At2g19190)/RE: AtSIRKp (WRKY11) BS2 /TF: WRKY11 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G64950 |PROD: the same as GENE |25971070..25972386 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +43 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.35 C - 0.16 1 tggtcatgag ccacatgtat tgcttgtgta tagagagatt tagaaattag 51 gaactttttc gtataaatat actcattgta ctcagctact cactagactc 101 atctctgttt tagtaatatt ttgaatactg tatctcaaat aaattaatct 151 tatcaaatag aaaccatagt tgaaaagtca tgaatgattc ttaactgtac 201 AAAATAATAA GCTTTGGTAA AACCCTAAAC TTTCGTTTCC AAGATGCAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.002 -strand +28 : +20 TTAGGGTTT AC RSP00369 Mean Expected Number 0.002 +strand +20 : +28 AAACCCTAA AC RSP01303 Mean Expected Number 0.004 +strand +19 : +28 aAAACCCTAA Totally 3 motifs of 3 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: nucleotide-sugar transporter family protein |LOCUS: AT5G65000 |PROD: the same as GENE |complement(25982192..25984619) |SUPPORT | 7 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.33 C - 0.15 1 tacaaaattt ggtggggatt tttttttttt ttttgtaatc tagatttgac 51 aaatttaata tggataaatt cttgcaaaat ttcccaaaaa gtgtttactt 101 agcaaggatt ATTGTtttta cacttgtcaa acaaatacga cggcgttttg 151 tagttcatct cttgagaaaa cgacgtccaa tgtagaaaaa gtgaaaaagc 201 GTTCTTCAAA GCACAAACCA ATTCTCGACC AAAAGATCAG AACAAAGCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00021 Mean Expected Number 0.008 +strand -15 : -4 AAAAAGTgAAAA AC RSP00601 Mean Expected Number 0.000 -strand -184 : -192 CCCCACCAA AC RSP00734 Mean Expected Number 0.002 -strand -51 : -58 CAAAACGC AC RSP00838 Mean Expected Number 0.009 -strand -58 : -63 CCGTCG AC RSP01497 Mean Expected Number 0.001 -strand -57 : -66 GCCGTCGtAT AC RSP01638 Mean Expected Number 0.001 +strand +4 : +14 CTTCAAAGCAC Totally 6 motifs of 6 different REs have been found Description of REs found 20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1 577. Group RE: C-rich R /AC: RSP00601//OS: Lycopersicon esculentum /GENE: rbcS2/RE: C-rich R /TF: unknown 697. Group TF: DET1; CDA-1 /AC: RSP00734//OS: Arabidopsis thaliana /GENE: cab2/RE: CDA-1 BS /TF: DET1; CDA-1 783. Group RE: CCGTCG motif /AC: RSP00838//OS: Arabidopsis thaliana /GENE: H4A748/RE: CCGTCG motif /TF: unknown 1359. Group RE: CS5 /AC: RSP01497//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS5 /TF: unknown ||Identical REs AC: RSP01498 1458. Group RE: TERE /AC: RSP01638//OS: Arabidopsis thaliana /GENE: AGP/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G65120 |PROD: the same as GENE |26030108..26031866 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +392 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.31 C - 0.22 1 gacataagcc agattgatct tttccatctt gttacccaac tttcctaatt 51 ttaggtaatg tgggcttttg ggctttatgt aactgtgggt ttttaatttg 101 tggcccatta agtaaatcta agagtcctcg cgcgtgactc ccgagtccga 151 cgaattcgaa acgcgggtca aaagaaaatc taagatcgga gaaatcagga 201 TTTGTTCCCG CCTCAACCAC TTCTAAAATA AACCCTAATT CTCTGTTGAG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00279 Mean Expected Number 0.001 -strand +38 : +30 TTAGGGTTT AC RSP00369 Mean Expected Number 0.001 +strand +30 : +38 AAACCCTAA AC RSP00654 Mean Expected Number 0.006 +strand +14 : +23 CAaCCACTTC AC RSP00297 Mean Expected Number 0.000 +strand -99 : +37 GGCCCA-- ** bp --ACCCTAA AC RSP01303 Mean Expected Number 0.003 +strand +29 : +38 TAAACCCTAA AC RSP01304 Mean Expected Number 0.003 +strand +29 : +38 TaAACCCTAA AC RSP01708 Mean Expected Number 0.009 +strand -156 : -147 CTAATTTTAG AC RSP01708 Mean Expected Number 0.009 -strand -147 : -156 CTAAAATTAG Totally 8 motifs of 7 different REs have been found Description of REs found 270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC: RSP00448 354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown 628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown 925. Group TF: At-TCP20 /AC: RSP00297//OS: Arabidopsis thaliana /GENE: PCNA/RE: Box II/telo-box (motifs 2 & 3) /TF: At-TCP20 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1197. Group RE: Telo box /AC: RSP01304//OS: Lycopersicon esculentum /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown 1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: bZIP family transcription factor (TGA1) |LOCUS: AT5G65210 |PROD: the same as GENE |26075043..26078330 |SUPPORT | 9 exon(s) |Alternative mRNAs: 5 | -200:+51 from mRNA start|,5"-UTR: +1214 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.18 T - 0.27 C - 0.14 1 gaaagtggaa gaaaaaaata gtatagaaaa atgtaataat tggttttgac 51 tcactgtagc tgagttatgc gtgaagacaa aaatcaccga gaaaccacag 101 aaacaaatag aaaaaatagt taaatatata aaacaaatat aaaataactg 151 cgtcaaaggt ctcatttaag ttgtcgtgat tcttcttcct tcgtctactt 201 GAAGATGATG AAACCTGAGT TTCTGAGACA GAAGGAAGAG CTTTTAACAT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00163 Mean Expected Number 0.006 -strand +35 : +25 CCTTcTGTCTC AC RSP00716 Mean Expected Number 0.001 -strand -153 : -161 CAAAACCAA AC RSP00953 Mean Expected Number 0.007 -strand -159 : -167 CAATTATTA AC RSP01004 Mean Expected Number 0.010 -strand -30 : -39 ACTTAAATGa AC RSP01463 Mean Expected Number 0.007 -strand -68 : -80 tTTTATATATTTA Totally 5 motifs of 5 different REs have been found Description of REs found 158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 880. Group TF: ATHB6 /AC: RSP00953//OS: Arabidopsis thaliana /GENE: ATHB6/RE: ATHB6 BS /TF: ATHB6 929. Group TF: DEF/GLO /AC: RSP01004//OS: Antirrhinum majus /GENE: DEFH125/RE: CArG2 /TF: DEF/GLO 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ribosomal protein L29 family protein |LOCUS: AT5G65220 |PROD: the same as GENE |26078455..26079888 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +72 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.17 T - 0.37 C - 0.17 1 tatataaact tggttccaaa tcccctgtaa taatgtcgag ctatctgcaa 51 tttgaaaact ataggggctt tacttaattt tacgttttgt gtgacaccta 101 tttgattttt tttgatacgt ttggaccagt ttcgtaatta gaggtaaata 151 aaggggcaaa tagtaagata taagaaaagc cttatctcat agagtttctt 201 CTCTTCATTA TCCTCAAAAT CGCTCGAGAG TGAGAACTCT GCTCTTCTTC 251 T Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: Ras-related GTP-binding family protein |LOCUS: AT5G65270 |PROD: the same as GENE |26100602..26101940 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +61 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.24 C - 0.21 1 tcatcaccca aaaacatgcg cctgacagaa agataattgt cgaatccgtc 51 aaatctcacc gagccggcag aatccaacgg ttaatattta gacacgtcat 101 cattaattaa aaatATTGAc taatagttga caacgacgac aatacgaccg 151 tatcagatct ctctctgcgt ttaaaacttc aaaaaagctc acttttcggt 201 AAAAGCTTAA AACAGAGGAT TTAGCAAGAG AGGATTTAGC GAGAGAGAGA 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00125 Mean Expected Number 0.004 -strand -84 : -95 AATATTTTTAaT AC RSP00460 Mean Expected Number 0.005 +strand -110 : -101 GACAcGTCAT AC RSP00864 Mean Expected Number 0.002 +strand +42 : +50 AGAGAGAGA AC RSP00864 Mean Expected Number 0.000 -strand -35 : -43 AGAGAGAGA AC RSP00916 Mean Expected Number 0.003 -strand -100 : -109 GATGACGTGT AC RSP00997 Mean Expected Number 0.004 -strand -100 : -109 GATGACGTGT AC RSP01258 Mean Expected Number 0.005 -strand -102 : -109 TGACGTGT AC RSP01654 Mean Expected Number 0.008 -strand -100 : -109 GATGACGTGT AC RSP01658 Mean Expected Number 0.000 -strand -100 : -111 GATGACGTGTCt Totally 9 motifs of 8 different REs have been found Description of REs found 123. Group RE: AT-1 (3) /AC: RSP00125//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (3) /TF: unknown ||Identical REs AC: RSP00133 RSP00788 438. Group TF: O2 /AC: RSP00460//OS: coix /GENE: alpha-coixin/RE: O2d /TF: O2 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 847. Group TF: Opaque-2 /AC: RSP00916//OS: Zea mays /GENE: b-32/RE: B4 /TF: Opaque-2 918. Group TF: Opaque-2 (O2) /AC: RSP00997//OS: Zea mays /GENE: cyPPDK1/RE: O2 BS-2 /TF: Opaque-2 (O2) 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5 1476. Group TF: HY5 /AC: RSP01658//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At4g38810)/RE: C/G-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AGP7 |LOCUS: AT5G65390 |PROD: arabinogalactan-protein (AGP7) |complement(26145810..26146564) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +63 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.08 T - 0.41 C - 0.21 1 cacttaaacg tttctgctat ttgactacta aaatgttatt ccttcatttg 51 aatattagct actaatcatt atttatacta ataataatcg aataattatg 101 atcccctccg caagatattt aattagatac tacttaattt ataattATTG 151 Ttatctctct ctctcgcttt atatagttcc atcgtggtca ttcctcacct 201 AAACAACTCT GCTTCACTCT CTATCTTTCT TAAGTAAACA AATCTTTAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.005 -strand -37 : -45 AGAGAGAGA AC RSP00864 Mean Expected Number 0.005 -strand -39 : -47 AGAGAGAGA AC RSP01167 Mean Expected Number 0.005 -strand -80 : -88 TAAATATCT Totally 3 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: GRF8 |LOCUS: AT5G65430 |PROD: 14-3-3 protein GF14 kappa (GRF8) |complement(26165427..26167568) |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +87 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.14 T - 0.36 C - 0.25 1 tattatcgtc cattcactcg ctcttatcaa aaaaaccgaa acctagccac 51 gcgcctcgta cactcaacgt gggtttcacg ctgttaatcc ttatttcaac 101 taacgacgtc gtttatcaga gtgtgttaat cacgcgcgag tgaagagaat 151 ttccttttac agctcattat gactcggctt tgaagctttt tattcttctt 201 CTCAATTTCT TTTTTTCTTC CAGAAATTTC CTCCGATTTC AAAATTTTCC 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00051 Mean Expected Number 0.004 +strand -148 : -139 GCCtCGTACA AC RSP00052 Mean Expected Number 0.001 -strand -140 : -150 GTACGaGGCGC AC RSP00063 Mean Expected Number 0.001 -strand -146 : -155 GgCGCGTGGC AC RSP00075 Mean Expected Number 0.004 -strand -140 : -149 GTACGaGGCG AC RSP00960 Mean Expected Number 0.005 +strand -104 : -97 CAACTAAC AC RSP01635 Mean Expected Number 0.001 -strand -16 : -26 CTTCAAAGCCG Totally 6 motifs of 6 different REs have been found Description of REs found 50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown 51. Group RE: ABRE /AC: RSP00052//OS: Oryza sativa; /GENE: Rab-16A/RE: ABRE /TF: unknown 62. Group RE: Motif III /AC: RSP00063//OS: Oryza sativa /GENE: rab16B/RE: Motif III /TF: unknown 74. Group TF: TAF-1 /AC: RSP00075//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: Iwt /TF: TAF-1 885. Group TF: HvGAMYB /AC: RSP00960//OS: Hordeum vulgare /GENE: ITR1/RE: MYB BS /TF: HvGAMYB 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G65650 |PROD: the same as GENE |26256728..26258741 |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.32 C - 0.22 1 tcaacgcatt catcattact gcggcactta cgtcaacgaa ttaatctttt 51 atcgataaaa ttccaagagg ccctaactta ggcttaatca attattgggc 101 ctataaagaa cggcaactga tgtagatcca aatgggcttt atttagtaag 151 cccaaacttt atgttttctc ttatatcttc ctgctctgtt attagaaaga 201 ATCTCCGATT TAGATAGAAA CAACAATCCT CCGGTGGTCA CTCGCTAATC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00103 Mean Expected Number 0.006 +strand -177 : -168 GCACtTACGT AC RSP00112 Mean Expected Number 0.006 -strand -166 : -173 TGACGTAA AC RSP00880 Mean Expected Number 0.004 +strand -93 : -84 gAACGGCAAC AC RSP00918 Mean Expected Number 0.007 -strand -164 : -173 GTTGACGTAA AC RSP01017 Mean Expected Number 0.006 +strand +16 : +23 AGAAACAA AC RSP01060 Mean Expected Number 0.005 +strand -112 : -104 CAATTATTG AC RSP01060 Mean Expected Number 0.005 -strand -104 : -112 CAATAATTG AC RSP01077 Mean Expected Number 0.002 -strand -104 : -112 CAATAATTG AC RSP01655 Mean Expected Number 0.000 -strand -164 : -175 GtTGACGTAAGT Totally 9 motifs of 8 different REs have been found Description of REs found 101. Group RE: Z element /AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/RE: Z element /TF: unknown 110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 980. Group TF: Hahb-4 /AC: RSP01060//OS: Helianthus annuus /GENE: OLIGOs/RE: Hahb-4 BS /TF: Hahb-4 995. Group TF: CpbZIP1; CpbZIP2 (short) /AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/RE: HDZIP BS /TF: CpbZIP1; CpbZIP2 (short) 1473. Group TF: HY5 /AC: RSP01655//OS: Arabidopsis thaliana /GENE: PID (At2g34650)/RE: C/A-box /TF: HY5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G65810 |PROD: the same as GENE |complement(26354895..26356963) |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +593 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.25 T - 0.27 C - 0.15 1 tgactgagaa agctaaatct aaacaagata gagaagggaa gaagaaacag 51 aggagtcgat aaaggcttta gttttttttt tggctgagtc atcgtacagt 101 gcatgttgtt tttttaagct tgcaacttgc aagtgtcggc aaaacggcaa 151 gaagtcttat tgttagttaa atgcgcagaa ctaaaacggc cgcgtttgag 201 AGCAGAGCAC TCGATAATTA ACACTAGGGA CGAAGAAGCT CTCGTTTAGT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00871 Mean Expected Number 0.009 +strand -118 : -109 GcTGAGTCAT Totally 1 motifs of 1 different REs have been found Description of REs found 807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: leucine-rich repeat family protein |LOCUS: AT5G65830 |PROD: the same as GENE |complement(26359342..26360547) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.26 C - 0.20 1 actattttaa aggctgaaaa cgataaaaac gcaaatcttg aaagtgacta 51 ttgtatcgta taatcaaaat ttattaacaa aatcaatttt aatcccaaat 101 ggacaaatac ttatctatga aagctctata atgcgcgcag cccaagacgc 151 tactaacgtg cgcattaaaa cccggccgaa agaagaagac gatcactctc 201 ACAAGCAAAA AAAATTCACT TTTTGTTTTT GTTAACACTC ACGTGAAAGC 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00751 Mean Expected Number 0.005 +strand -184 : -173 AAAaCGATAAAA AC RSP01013 Mean Expected Number 0.008 +strand -105 : -96 CAAATGGAcA Totally 2 motifs of 2 different REs have been found Description of REs found 713. Group TF: GT-1 /AC: RSP00751//OS: Catharanthus roseus /GENE: STR/RE: BN-2 /TF: GT-1 938. Group TF: GAPF /AC: RSP01013//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 1 /TF: GAPF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G65960 |PROD: the same as GENE |26402574..26404630 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +65 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.36 C - 0.17 1 ttaggacaca atctgttttg agatgtgttt tgtggcaact gtttttcttt 51 caatgcaaaa agtgtgtgtg tgcttaaaac gaccatacat ggtcaagcta 101 acgcagataa aacattcaat atttcgttgt ATTGGgcctt ttgatatttg 151 ggcttcaaat tatcacttga cgttgggttt gccttttctc acttgacgac 201 AAATCAGAAT TAGCATCTGT TTAGATTGGA TCTTGATCAC TGGCGGGCGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00114 Mean Expected Number 0.004 -strand +3 : -7 tTTGTCGTCA AC RSP00727 Mean Expected Number 0.008 -strand -103 : -109 GCTTGAC AC RSP00969 Mean Expected Number 0.001 +strand -8 : +2 tTGACGACAA Totally 3 motifs of 3 different REs have been found Description of REs found 112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown 690. Group RE: U-box /AC: RSP00727//OS: Nicotiana tabacum /GENE: Ubi.U4/RE: U-box /TF: unknown 892. Group TF: STGA1 /AC: RSP00969//OS: Glycine max /GENE: GmAux28/RE: Aux28B2 /TF: STGA1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: senescence-associated family protein |LOCUS: AT5G66040 |PROD: the same as GENE |26427746..26428581 |SUPPORT | 4 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.18 T - 0.27 C - 0.16 1 tgaaaattca tcaagtaaac ccaagacgag gttagctaaa atgatgccgt 51 tttggaatgg taatatgaaa atatgaagga cagtccgaaa acagcttagc 101 ccataaagca gcaacttagg cccattatgt atttgtaata tatggcccaa 151 ttataatcac tttcccaact aatttatata aaatgaaatt attgaagtct 201 TTGTCCAGTC AAATATAATA ATAAGCCATT GAAAAAAATG GCGGAGGAGA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.009 +strand -29 : -18 ATTTATATAAAa AC RSP00157 Mean Expected Number 0.009 -strand -18 : -29 tTTTATATAAAT AC RSP01150 Mean Expected Number 0.001 +strand -52 : -42 AATTATAATCA Totally 3 motifs of 2 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 1066. Group RE: C-DP BS2 /AC: RSP01150//OS: Cucumis sativus/GENE: POR/RE: C-DP BS2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G66090 |PROD: the same as GENE |26442962..26444394 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +95 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.33 C - 0.22 1 ttatttcctt cttgccttgc accaccattg ttaactctat tcaattcaaa 51 gtttcaaacc ctttgaccaa tgcatcccct tattgggctt tgattatatg 101 ggccctttct atttgatatt ttTCAATata tggcccgtta ataaatttaa 151 tatatagctt cggccttata agaagaattc aagcccctca ccgatactct 201 AGTCCAAGCC GTGGGCAGAA CCAAAATAAG AGAACAAAAA AAAAGTTTGT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 -strand -114 : -123 CCCAATAAGG AC RSP00894 Mean Expected Number 0.007 +strand -25 : -18 AATTCAAG AC RSP01032 Mean Expected Number 0.007 +strand +21 : +30 CCAAAATAAG AC RSP01091 Mean Expected Number 0.009 -strand -102 : -112 ATAtAATCAAA AC RSP01209 Mean Expected Number 0.006 -strand +30 : +21 CTTATTTTGG AC RSP01214 Mean Expected Number 0.002 +strand -123 : -114 CCTTATTGGG Totally 6 motifs of 6 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 825. Group TF: Dof family /AC: RSP00894//OS: Solanum melongena /GENE: SmCP/RE: ERE 2 /TF: Dof family 957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: 3-dehydroquinate synthase, putative |LOCUS: AT5G66120 |PROD: the same as GENE |complement(26448602..26451004) |SUPPORT | 8 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +129 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.25 C - 0.25 1 aaacggcatc gtttttatcc gaggcgtaca tgagaagaca agtagtgagg 51 tctttacgtg acgtgtcaat atctagaccg cctatctcac gtgagtaaaa 101 taaataacct gttttagcgt agggtgagtt gtaggagatt acaCCAATgg 151 cctgagagag tgaccaccac ctaccccacg ccgtctccga aggcttcacc 201 AAACAACACC ACGAAATCAA TCCTCTAATG TATTTCTTCA ATTCAGTCTT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.009 +strand -35 : -26 aCCACCTACC AC RSP00357 Mean Expected Number 0.002 -strand -70 : -77 CAACTCAC AC RSP00433 Mean Expected Number 0.001 -strand -23 : -34 tGGGGTAGGTGG AC RSP00434 Mean Expected Number 0.000 -strand +46 : +34 CTGaATTGAAGAA AC RSP00781 Mean Expected Number 0.000 +strand -115 : -106 CTCACGTGAG AC RSP00781 Mean Expected Number 0.000 -strand -106 : -115 CTCACGTGAG AC RSP01258 Mean Expected Number 0.002 +strand -142 : -135 TGACGTGT Totally 7 motifs of 6 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown 413. Group TF: AtMYB84 /AC: RSP00433//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: AtMYB84 BS /TF: AtMYB84 414. Group TF: TFIIIA /AC: RSP00434//OS: Arabidopsis thaliana /GENE: eEF-1beta/RE: TFIIIA-box /TF: TFIIIA 736. Group TF: G-box binding TF /AC: RSP00781//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 5 /TF: G-box binding TF 1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G66170 |PROD: the same as GENE |26464874..26465953 |SUPPORT | 5 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +180 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.39 C - 0.20 1 gcgcaattcc atcaccaaaa ctttctatta catactcaac ttcttttgat 51 tactaaattc agccaacatt tccttctcat ctctaatcag tgaacacgtt 101 ttctatgcag gctttggggc ctatcttacc atagctgtct aagaagacta 151 ttatcttata ttctttattg tagatttcat ttacttgcgt atggaattgg 201 AAACAAATTT CTAATTGTTG AATCATATAC CATTATTTTT ATATTGGCCA 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00955 Mean Expected Number 0.001 -strand -99 : -110 AAAACGTGTTcA AC RSP01702 Mean Expected Number 0.007 +strand -108 : -99 AACACGTtTT Totally 2 motifs of 2 different REs have been found Description of REs found 882. Group TF: JAMYC2; JAMYC10 /AC: RSP00955//OS: Lycopersicon esculentum /GENE: LAP/RE: T/G-box /TF: JAMYC2; JAMYC10 1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G66240 |PROD: the same as GENE |26483430..26485652 |SUPPORT | 10 exon(s) |Alternative mRNAs: 2 | -200:+51 from mRNA start|,5"-UTR: +64 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.29 C - 0.19 1 atattggtta tcatgttcaa ttgtaataag tttgtaacca gttgatggta 51 aagtcaacga tccacggctt tgctggatgt tgccatgttg gaatggagaa 101 gcgcatcatt tgggcccata tttaaaagcc catactcaaa aagttggccc 151 acatagaaaa tcgttggcat cagttaaggc ggtggaagac gtcgatccct 201 AAAGTCGAAG CCCTTGTTAG GGCTTCTATA CATCACCGGC GATATTGGTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00918 Mean Expected Number 0.004 -strand -143 : -152 GTTGACTTTA Totally 1 motifs of 1 different REs have been found Description of REs found 849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: kinectin-related |LOCUS: AT5G66250 |PROD: the same as GENE |26485759..26487782 |SUPPORT | 2 exon(s) |Alternative mRNAs: 3 | -200:+51 from mRNA start|,5"-UTR: +517 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.29 G - 0.21 T - 0.33 C - 0.17 1 gataaacccc aagtctttct aatgttgtaa ttcgtgtaat ttacaagttt 51 gactgtttct gactgattct tccgggaagc aatcgatctg actgagagct 101 tgggtcgaag ttaaaatggt gggccggcAC AATatttaag taaaagccca 151 ataaggtcca aactctaact aatttatagc agttaagaaa gttggtttag 201 GGAAACTTTA TGCCAAACTA AATTTATTCT CCTTGGCGTC TTGTTGTGTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00229 Mean Expected Number 0.001 +strand -54 : -45 CCCAATAAGG AC RSP01214 Mean Expected Number 0.002 -strand -45 : -54 CCTTATTGGG Totally 2 motifs of 2 different REs have been found Description of REs found 222. Group RE: CArG Box 1 /AC: RSP00229//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 1 /TF: unknown 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ATFOLT1 |LOCUS: AT5G66380 |PROD: mitochondrial substrate carrier family protein |complement(26530750..26532891) |SUPPORT | 10 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +132 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.23 T - 0.31 C - 0.19 1 acctaaacgt tttaaatagt aagcctcata tattgttcag aatgaactaa 51 aagtgttggg ctttgggttt ttagaattaa ctaaacgtat tgggcctcaa 101 ataactatcg aaacctcttc tgatttgggt tttagcttcc gagtaaaacg 151 gcgccgtgtt ggaagcatat cttgaacgga cggcagaact cggagtcgga 201 GATCGTACCG GAGGACGGCG AATCTTCCAT CTACTGTCCT TTCGTTTTTT 251 A Any Motif not found ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G66410 |PROD: the same as GENE |26537032..26538922 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +103 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.25 G - 0.21 T - 0.33 C - 0.22 1 cacgtacatc gtcgttgatt gggtgaattt gaagaaactt ggctgggtct 51 gaaacatttg ggctcatgtg tgggccgtaa atcacttact aattagccca 101 tggactaaaa ctaagcccta acaaaattta ctcaactttt accaaacgcc 151 gcgtttagat cgttggtgtt cattgtcggg gagtttctcc tctctgcacc 201 AGATTTCAAA TCCTTGTTTA CAATCTCTTC TCTGGCTATC TTAGAGGGAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00142 Mean Expected Number 0.005 +strand -54 : -48 CGCCGCG AC RSP00385 Mean Expected Number 0.007 +strand +3 : +10 ATTTCAAA AC RSP01030 Mean Expected Number 0.004 +strand -168 : -161 AGAAACTT AC RSP01134 Mean Expected Number 0.005 -strand -146 : -155 GTTtCAGACC AC RSP01599 Mean Expected Number 0.009 +strand +4 : +11 TTTCAAAT Totally 5 motifs of 5 different REs have been found Description of REs found 138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown 370. Group RE: ERE-core /AC: RSP00385//OS: Dianthus caryophillus /GENE: GST1/RE: ERE-core /TF: unknown ||Identical REs AC: RSP00893 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF 1052. Group TF: CTF2 /AC: RSP01134//OS: Nectria haematococca /GENE: Cutinase/RE: CTF2 BS /TF: CTF2 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G66490 |PROD: the same as GENE |complement(26564453..26564994) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +16 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.41 G - 0.22 T - 0.22 C - 0.15 1 gtcctaatta agtcaaacac caaagaagac atagtcaaaa ataaagtagc 51 attgacccac gaatagtagt aggtgaaagg gcaatgtcac ataaggttta 101 agttaaagga gtcgttggga taaggagaag agaagtcaaa agatgtgtcc 151 ttttcaaaat ctatcctttc ttaaaaacat atcaccagag agaattgatc 201 AAAACCACAA GAAATAATGA TTAGAGCGCT GAGCACGAGG AAGGTTCGAG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00036 Mean Expected Number 0.003 +strand -187 : -180 CAAACACC AC RSP00212 Mean Expected Number 0.010 +strand +15 : +23 TAATGATTA AC RSP00254 Mean Expected Number 0.002 +strand -52 : -46 CCTTTTC AC RSP00872 Mean Expected Number 0.008 -strand -108 : -117 TaTGTGACAT AC RSP01039 Mean Expected Number 0.009 -strand -31 : -36 GAAAGG AC RSP01136 Mean Expected Number 0.010 +strand -116 : -110 TGTCACA Totally 6 motifs of 6 different REs have been found Description of REs found 35. Group TF: ABI3 /AC: RSP00036//OS: Brassica napus /GENE: napA/RE: ABRE Bp /TF: ABI3 205. Group TF: ATHB-2 /AC: RSP00212//OS: Arabidopsis thaliana /GENE: ATHB-2/RE: ATHB-2 BE /TF: ATHB-2 247. Group RE: Py box /AC: RSP00254//OS: Hordeum vulgare /GENE: Amy pHV19/RE: Py box /TF: unknown ||Identical REs AC: RSP00676 808. Group RE: GLM2 /AC: RSP00872//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM2 /TF: unknown 963. Group RE: Dof BS1 /Group TF: Dof family /AC: RSP01039//OS: Petroselinum crispum /GENE: Icy/RE: Dof BS1 /TF: Dof family 1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: |LOCUS: AT5G66510 |PROD: the same as GENE |complement(26566930..26568856) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +134 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.26 C - 0.22 1 tctttggttg atgttgatga taactatatt ctcaattctc agtggacgcc 51 aaagtgtgtg ccgtttgttc gagacttaaa aggataaagt gacgtggcga 101 agaattacca taatcaccat aaatttacct cctaatttta ccaacagcaa 151 cctgaaataa catgaaccgg ataataacgg tccgaccgaa aattgagcac 201 AAAACCAACA AATGGGGATG AGTCGTCAAA GACTGCACTC TCTCCTCTTC 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00113 Mean Expected Number 0.000 +strand -111 : -103 TGACGTGGC AC RSP00214 Mean Expected Number 0.002 +strand -111 : -104 TGACGTGG AC RSP00215 Mean Expected Number 0.002 -strand -104 : -111 CCACGTCA AC RSP00248 Mean Expected Number 0.003 -strand -103 : -112 GCCACGTCAc AC RSP00559 Mean Expected Number 0.005 -strand -39 : -49 TGTtATTTCAG AC RSP00716 Mean Expected Number 0.003 +strand -1 : +8 CAAAACCAA AC RSP00880 Mean Expected Number 0.007 +strand -59 : -50 CAACaGCAAC AC RSP01034 Mean Expected Number 0.007 +strand -109 : -103 ACGTGGC AC RSP01106 Mean Expected Number 0.000 -strand -101 : -111 tCGCCACGTCA AC RSP01280 Mean Expected Number 0.000 +strand -113 : -103 aGTGACGTGGC Totally 10 motifs of 10 different REs have been found Description of REs found 111. Group RE: TGA2 /AC: RSP00113//OS: Glycine max /GENE: GH3/RE: TGA2 /TF: unknown 207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474 208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38) 241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB 535. Group RE: 2'/Box II J1 /AC: RSP00559//OS: Lycopersicon esculentum /GENE: rbcS3B/RE: 2'/Box II J1 /TF: unknown 681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown 816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family 959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1 1024. Group RE: rHex /AC: RSP01106//OS: Spinacia oleracea /GENE: rps22/RE: rHex /TF: unknown 1179. Group TF: OBF4; OBF5 /AC: RSP01280//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: OBF4; OBF5 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: allergen V5/Tpx-1-related family protein |LOCUS: AT5G66590 |PROD: the same as GENE |26591407..26592098 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +74 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.35 C - 0.23 1 cattaatggg cctgaaagca acaacagaaa ttggaattaa ataacgttgg 51 gtatctgtct gtcacatgca acacagacaa cttgagaatg gatcaatcaa 101 cattcacgtg ccatgatcct ctcttcctct tattttgtct ccttccacca 151 atcccatatc tttctctatt atacatctct aattatctca cttttaacat 201 ATAGTTTTTT TATACATCTT TAATGACTAT ATAAACCAAA CACTGATCTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00377 Mean Expected Number 0.008 +strand -55 : -46 cACCAATCCC AC RSP00966 Mean Expected Number 0.001 -strand -89 : -98 GGCACGTGAa Totally 2 motifs of 2 different REs have been found Description of REs found 362. Group RE: LS5 /AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS5 /TF: unknown 889. Group RE: G-box /Group TF: GBF /AC: RSP00966//OS: Antirrhinum majus /GENE: pallida/RE: G-box /TF: GBF ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: DGL1 |LOCUS: AT5G66680 |PROD: |complement(26634770..26637893) |SUPPORT | 13 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.24 G - 0.19 T - 0.31 C - 0.26 1 tgccatctgg tctggtggtt ggtgaaaccc aacccacttc aatgccaaaa 51 taaaaagtct tatgtaagcc cattaattta aagcctacta aaggatttga 101 ttatatattt cggcccattt TCAATatttc gagcagtacg aaaacgccgt 151 cgtttgagag tacgtgatcg tcaacgcctg ggtccgttct acgatcgacc 201 ATCGCCGAGT CTGCTTCTTC TTCTCTCTCT CTCTCTCTAG TGGTCACACT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00072 Mean Expected Number 0.010 +strand -41 : -35 GTACGTG AC RSP00501 Mean Expected Number 0.006 +strand -71 : -65 CGAGCAG AC RSP00864 Mean Expected Number 0.003 -strand +38 : +30 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +36 : +28 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +34 : +26 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +32 : +24 AGAGAGAGA AC RSP00864 Mean Expected Number 0.003 -strand +30 : +22 AGAGAGAGA AC RSP01091 Mean Expected Number 0.006 -strand -95 : -105 ATAtAATCAAA AC RSP01283 Mean Expected Number 0.000 -strand +37 : +21 GAGAGAGAGAGAGAGAA AC RSP01454 Mean Expected Number 0.009 -strand -178 : -184 ACCAACC AC RSP01635 Mean Expected Number 0.001 +strand -164 : -154 CTTCAATGCCA AC RSP01755 Mean Expected Number 0.002 -strand -180 : -187 CAACCACC Totally 12 motifs of 8 different REs have been found Description of REs found 71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown 477. Group TF: EmBP-1 /AC: RSP00501//OS: Triticum aestivum /GENE: Em/RE: Em2 /TF: EmBP-1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1009. Group RE: box 1 /AC: RSP01091//OS: Pisum sativum /GENE: GS2/RE: box 1 /TF: unknown 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown 1325. Group RE: AC-II /Group TF: PtMYB4 /AC: RSP01454//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-II /TF: PtMYB4 1455. Group RE: TERE /AC: RSP01635//OS: Arabidopsis thaliana /GENE: XCP1/RE: TERE /TF: unknown 1560. Group TF: C1 /AC: RSP01755//OS: Glycine max /GENE: a2/RE: C1BS1 /TF: C1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G66800 |PROD: the same as GENE |26688649..26689740 |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +10 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.35 C - 0.20 1 ctattttggt tattatggct tcatcattga tcctttgtgc ataagaacta 51 aatgagtaat tgagtactat ataatactgc acaaggctct ctctgtgcaa 101 ttgactgtcc ctaccaaaat taactctctc tatctctctc tctttctttc 151 tctgtgtaag aagagtcttt aaaagtgagt atatttcgac acaaacgagc 201 TCTGTCTGTA ATGGCATGCT TAGAAATGTA CAACTCCAAT GGTGGTGGTG 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00489 Mean Expected Number 0.008 +strand -93 : -84 TcCCTACCAA AC RSP00860 Mean Expected Number 0.007 -strand -50 : -58 AGAAAGAAA AC RSP00861 Mean Expected Number 0.004 -strand -54 : -62 AGAAAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -58 : -66 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 -strand -60 : -68 AGAGAGAGA Totally 5 motifs of 4 different REs have been found Description of REs found 465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: SKS17 |LOCUS: AT5G66920 |PROD: multi-copper oxidase type I family protein |26740076..26742852 |SUPPORT | 7 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +113 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.35 C - 0.21 1 aaaatctaaa gggtgtaaat ttaaaagttg ttgaagttga tttatgagag 51 agttgattat gattatattt gaccaaaccc aaaaacaata aaataaagtc 101 actcgagatc ttcactgtca ttgATTGGaa ccacctttgg gactcctttt 151 tttttcttct ctcacttact tatgtcaccc acaactttcg ctatctaatt 201 GCACTTTTTA TAGACCAAAG TCCCTACATT ACTCTATTTT CTCAAACCCC 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00231 Mean Expected Number 0.006 -strand -73 : -79 CCAATCA AC RSP00999 Mean Expected Number 0.009 +strand -13 : -3 TCgCTATCTAA AC RSP01202 Mean Expected Number 0.002 -strand -61 : -68 CCAAAGGT Totally 3 motifs of 3 different REs have been found Description of REs found 224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown 920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3 1113. Group TF: NIT2 /AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/RE: NIT2 BS III /TF: NIT2 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G66985 |PROD: the same as GENE |26760505..26761034 |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +133 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.29 C - 0.19 1 aaagggatta agaatgcact aatcgcatga gaattgcacg taggagagca 51 catagtttgt gtccctttct tataaactaa tgaaatgcca aatcagccac 101 cagttttcac agaaccaacg ggacaagagc ccacgtaata tctattattc 151 ttcccttaaa agatgttttt ttaatgtaac aagttgcaat tatatgaatg 201 CGAAGTCTCA CCAATCCATT AATATATATA AATACACACG AGTGTGTGTT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00157 Mean Expected Number 0.007 +strand +22 : +33 ATaTATATAAAT AC RSP00157 Mean Expected Number 0.007 -strand +33 : +22 ATTTATATAtAT AC RSP00950 Mean Expected Number 0.001 +strand +7 : +17 CTCACCAAtCC AC RSP01083 Mean Expected Number 0.000 +strand +6 : +17 TCTCACCAAtCC Totally 4 motifs of 3 different REs have been found Description of REs found 152. Group RE: D2 /AC: RSP00157//OS: Glycine max /GENE: GmAux28/RE: D2 /TF: unknown 879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: ALC |LOCUS: AT5G67110 |PROD: basic helix-loop-helix (bHLH) family protein |complement(26802333..26803609) |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +45 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.34 G - 0.20 T - 0.23 C - 0.23 1 aaatataata ttattaaata aaattgctac aaaaggaaac tgttcacaca 51 cagagtgatg tgagacacca gattctgtct atagggattc gacacgccac 101 tcgcctcttt tagaacctcc acgcgcttct ctgaagaacg tgatctcacg 151 cgtcctacct cccccgccta taagctttac tacgaaaaag ccacagtgat 201 AATTTTTACA CACAGAGTAG AGCAGAGAGA GAGAGAGAGA GAGAGATGGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00864 Mean Expected Number 0.002 +strand +24 : +32 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +26 : +34 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +28 : +36 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +30 : +38 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +32 : +40 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +34 : +42 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +36 : +44 AGAGAGAGA AC RSP00864 Mean Expected Number 0.002 +strand +38 : +46 AGAGAGAGA AC RSP01283 Mean Expected Number 0.000 +strand +25 : +41 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand +27 : +43 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand +29 : +45 GAGAGAGAGAGAGAGAg AC RSP01283 Mean Expected Number 0.000 +strand +31 : +47 GAGAGAGAGAGAGAGAt Totally 12 motifs of 2 different REs have been found Description of REs found 800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1 1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G67130 |PROD: the same as GENE |26808592..26811253 |SUPPORT | 8 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +233 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.39 C - 0.16 1 tataaaacca ttattactta tattgataaa ctcttacaag atcactgttt 51 ccataaatct tgacaaaaat gtcactccat atgtttggtg tacaagacta 101 gaaactgtag ttttgagtta tgttattata atgttaaact gtattatgct 151 caaaattgaa ctccttttga aaggtggttt atcttcttta ctaatcgttt 201 CTTCATTTTC TCTCTAGGAG CTAGGTGGGA AAAAGATTCA ACCTTGTCTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00079 Mean Expected Number 0.001 -strand +29 : +20 CCCACCTAgC Totally 1 motifs of 1 different REs have been found Description of REs found 78. Group RE: AC-I /AC: RSP00079//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-I /TF: unknown ||Identical REs AC: RSP00420 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transferase family protein |LOCUS: AT5G67150 |PROD: the same as GENE |complement(26812997..26814538) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +86 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.26 C - 0.18 1 gaatcggaaa cactcgccgc tggggttgca acattccgtc gagctctgta 51 aaaaattcca tcaaacttcg acgataggtt gataatgggc ctaggggcta 101 gggACAATta atgggcttaa ctatataacc aaataaataa catgaaacac 151 gttgtagttc actagtttgg tatgtcatgt ctgaatttga ttccaaaaac 201 AGAAAATATA AAGATAAAGA AATTATACAC TCCACTAGTA GTGGACTAGT 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00038 Mean Expected Number 0.002 -strand -68 : -79 TtTGGTTATATA AC RSP00837 Mean Expected Number 0.002 -strand -156 : -165 AGcTCGACGG Totally 2 motifs of 2 different REs have been found Description of REs found 37. Group TF: GT-1 related TFs /AC: RSP00038//OS: Lycopersicon esculentum /GENE: LAT52; LAT56;/RE: 52/56 box /TF: GT-1 related TFs 782. Group RE: NON /AC: RSP00837//OS: Arabidopsis thaliana /GENE: H4A748/RE: NON /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: transferase family protein |LOCUS: AT5G67160 |PROD: the same as GENE |complement(26814839..26816267) |SUPPORT | 1 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +37 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.17 1 tattcacttt cctaacatat tcttaaagtt tgttgttata cacgtggaaa 51 tttcacaaaa tgacaaagca aataatgaaa aacaactcag gccacacaga 101 gtcacaaaca ttattaaagt gtgatgtaac ttgtttcttg gatcttggtc 151 tttttttaat tagtgctttc aatatatgta ctcatttgaa aacctcacgt 201 AACCCAAAAC CTCACTGATT AAGAAAAAGG TAAAACGATG GAAGAAGAAT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00340 Mean Expected Number 0.002 -strand -153 : -162 TCCACGTGTa AC RSP00524 Mean Expected Number 0.006 +strand -161 : -155 ACACGTG AC RSP00792 Mean Expected Number 0.002 -strand -60 : -69 CCAAGaAACA AC RSP00974 Mean Expected Number 0.001 +strand -162 : -153 TACACGTGgA AC RSP01017 Mean Expected Number 0.006 -strand -63 : -70 AGAAACAA AC RSP01103 Mean Expected Number 0.007 +strand -11 : -4 AAACCTCA AC RSP01103 Mean Expected Number 0.007 +strand +7 : +14 AAACCTCA AC RSP01255 Mean Expected Number 0.001 +strand -161 : -154 ACACGTGG AC RSP01734 Mean Expected Number 0.005 -strand -153 : -159 TCCACGT Totally 9 motifs of 8 different REs have been found Description of REs found 325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965 500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2 745. Group RE: DAE /AC: RSP00792//OS: Hordeum vulgare /GENE: Amy32b/RE: DAE /TF: unknown 897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981 942. Group TF: AEF /AC: RSP01017//OS: Arabidopsis thaliana /GENE: GapA/RE: AE box 2 /TF: AEF 1021. Group RE: AC1 /AC: RSP01103//OS: Spinacia oleracea /GENE: rps22/RE: AC1 /TF: unknown 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1 1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: AP2 domain-containing transcription factor |LOCUS: AT5G67180 |PROD: the same as GENE |complement(26819233..26821245) |SUPPORT | 9 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +85 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.10 T - 0.46 C - 0.16 1 acacttgtat tgggaaagaa tcaattttca aaatgaattt cttcataaat 51 attttttttt cctttgactc ctttcattga taaaaaaaaa tcctgcacct 101 ctctaatgat gaatacttga atagagtcag atatttattc tattaaataa 151 tttagttatt tatttagaac ctacctttat ttgctttgat ggttattctc 201 ATCTGAGTTT TCTTCTTCTC TCTTATTTCT CTCCCAAGTT TCTTATTTTT 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00985 Mean Expected Number 0.005 -strand -25 : -34 AGgTAGGTTC AC RSP01078 Mean Expected Number 0.000 -strand -5 : -16 ATAACCATCaAA AC RSP01167 Mean Expected Number 0.006 -strand -64 : -72 TAAATATCT AC RSP01453 Mean Expected Number 0.006 +strand -32 : -26 ACCTACC Totally 4 motifs of 4 different REs have been found Description of REs found 906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305) 996. Group TF: DcMYB1 /AC: RSP01078//OS: Daucus carota /GENE: DcPAL1/RE: box-L0 /TF: DcMYB1 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins 1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CYCD3;2 |LOCUS: AT5G67260 |PROD: cyclin family protein |26853374..26855037 |SUPPORT | 4 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +165 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.38 G - 0.21 T - 0.27 C - 0.14 1 aggactggga gcgtaatcat cacgatccga tcgggacata tgtttgtctc 51 catcgtacgg atagggtata tgagcgtgtt tttcacgcgc atcattcgcg 101 tgaactaaga atgctaatga attcgttaat tcgttaaaat aaaataaaat 151 aaattatatt agaaattaaa agaaaagaaa gaaagaaaaa aaaaaaagac 201 AAGGCGTGAG ATAATAAAAC CCTTTGGCTT TCTCATAGAG ATTTGTCCGG 251 T RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00272 Mean Expected Number 0.000 +strand -118 : -108 TCACGCGcATC AC RSP00379 Mean Expected Number 0.002 +strand -143 : -134 CGGATAGGGt AC RSP00444 Mean Expected Number 0.001 +strand -26 : -13 AAGAAAGAAAGAAA Totally 3 motifs of 3 different REs have been found Description of REs found 264. Group RE: Type II element /AC: RSP00272//OS: Nicotiana tabacum /GENE: artifical construction/RE: Type II element /TF: unknown 364. Group RE: LS7 /AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/RE: LS7 /TF: unknown 424. Group TF: Dof1 /AC: RSP00444//OS: Zea mays /GENE: cyPPDK1/RE: box d /TF: Dof1 ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: CYP81G1 |LOCUS: AT5G67310 |PROD: cytochrome P450 family protein |complement(26871249..26874167) |SUPPORT | 2 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +17 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.28 G - 0.13 T - 0.35 C - 0.24 1 atctccgaca aaaagtaaac ctttactggg taaccaaatc actagattat 51 cgtaatgggc ctatcaataa ccaataactt catatttttc ggcccaaccc 101 atcgtatatt tttgactagt ctctccagaa ctatgtacac tttcttttct 151 ttttttcgct ccctcgtata ttataatagt gagacctctg gtattttttt 201 GACTACTCTC CAGAATCATG CGACTAGTCT CCAGAATTAT GTGTTCACGA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00450 Mean Expected Number 0.002 -strand -86 : -97 TCAAAAATATaC AC RSP00868 Mean Expected Number 0.005 -strand -23 : -34 TATTATAaTATA AC RSP01109 Mean Expected Number 0.009 -strand +40 : +33 ATAATTCT Totally 3 motifs of 3 different REs have been found Description of REs found 429. Group RE: AIV /AC: RSP00450//OS: Phaseolus vulgaris /GENE: CHS/RE: AIV /TF: unknown 804. Group RE: TA-rich motif /AC: RSP00868//OS: Nicotiana tabacum /GENE: NiPMT1a/RE: TA-rich motif /TF: unknown 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: porin, putative |LOCUS: AT5G67500 |PROD: the same as GENE |26952389..26954709 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +60 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.26 G - 0.17 T - 0.34 C - 0.22 1 gtgggctgat ttcgaacccg taaccttttt atatattaga cctcattacc 51 aaaaagcgat tcgattatct cataaagcgt catgtgtttt tttgtgccac 101 atcaacggct gtgagtggtt agtcactaaa gaaaagtcac aggctgttat 151 atagtattgg cttcgctatt tattttcgtc taccacgaga aaaacaagtc 201 GTAATTCTTC TATCTTGATA TCTTCACCGC CTGCCGATCT CTCTCAATCT 251 C RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00915 Mean Expected Number 0.004 -strand -95 : -104 GTTGATGTGG AC RSP01602 Mean Expected Number 0.008 +strand +42 : +49 TCTCAATC Totally 2 motifs of 2 different REs have been found Description of REs found 846. Group TF: Opaque-2 /AC: RSP00915//OS: Zea mays /GENE: b-32/RE: B3 /TF: Opaque-2 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: adenylylsulfate kinase, putative |LOCUS: AT5G67520 |PROD: the same as GENE |26956385..26958172 |SUPPORT | 6 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +183 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.28 C - 0.18 1 gttggagata aggaaatcat caaatcataa aagatccatt taggttagaa 51 ataaatacac acttattgaa tatcatttga taaggcttat ctcaaactaa 101 taaaacaaga atcgagattc gagaatctca ctaaacaaat agattaggtg 151 aatccgacaa aagccaatga tgccgtcacg ctcataaaac tcggattcca 201 CAAGCCCAAA ATAGACAACA TGTTTTATTT TATTATTTGT TTACCGACTT 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00022 Mean Expected Number 0.005 -strand +36 : +28 ATAATAAAA AC RSP00054 Mean Expected Number 0.009 +strand -116 : -110 GCTTATC AC RSP01339 Mean Expected Number 0.001 +strand +42 : +50 TACCGACTT Totally 3 motifs of 3 different REs have been found Description of REs found 21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1 53. Group RE: C2a-BS /AC: RSP00054//OS: Oryza sativa tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/RE: C2a-BS /TF: unknown 1224. Group RE: DR1 /AC: RSP01339//OS: Arabidopsis thaliana /GENE: rd17/RE: DR1 /TF: unknown ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: FRO1 |LOCUS: AT5G67590 |PROD: NADH-ubiquinone oxidoreductase-related |26975232..26976781 |SUPPORT | 5 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +67 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.39 G - 0.15 T - 0.35 C - 0.11 1 atgaatagga tcaagctgaa taaaatatac tagtactatt ttttaaaaat 51 aatgtatcta taaaatttat cgttgttaaa tctcacagat agtttagggg 101 ctattaaaga tttttcatat aatagtaaga ccgaaagcgt aatttataaa 151 attttgatgg ctagattgaa atatgtgttt tttttttctt tctaaaatct 201 ACAGAAGTAG AAGAAACCAA AGCGAAATCA AAAAGCTCAG CAATTTTCCA 251 G RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00117 Mean Expected Number 0.007 -strand -147 : -159 cATTATTTTTAAA AC RSP00860 Mean Expected Number 0.002 -strand -8 : -16 AGAAAGAAA AC RSP00879 Mean Expected Number 0.004 +strand -69 : -63 CGAAAGC Totally 3 motifs of 3 different REs have been found Description of REs found 115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 815. Group RE: D2 /Group TF: Dof family /AC: RSP00879//OS: Hordeum vulgare /GENE: Al21/RE: D2 /TF: Dof family ------------------------------------------------------------ > A.thaliana, Chr 5: GENE: expressed protein |LOCUS: AT5G67600 |PROD: the same as GENE |complement(26976797..26977535) |SUPPORT | 3 exon(s) |Alternative mRNAs: 1 | -200:+51 from mRNA start|,5"-UTR: +83 bp |Taxon: Dicot |Promoter: TATA-less Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.34 C - 0.13 1 ctagtagtag agtagttgaa attaaattct tgtacggtca agtttctagc 51 acattagaag aagatcacct aattttcaaa gaaatttaat cgtaatcttt 101 atgatgcaag aaagacttta tttaaagaat atttccttta ttttctggtt 151 cctttattaa attaaaagta tatatcatta ttcctcaccg gcatagcttc 201 GTTATAAAGG AAAGGAACAG AGTTTGCTTT TAAACAAAGA GAGAAAGAAA 251 A RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case): AC RSP00615 Mean Expected Number 0.008 +strand -17 : -12 CTCACC AC RSP00860 Mean Expected Number 0.006 +strand +42 : +50 AGAAAGAAA AC RSP01030 Mean Expected Number 0.009 -strand -154 : -161 AGAAACTT Totally 3 motifs of 3 different REs have been found Description of REs found 591. Group RE: C-rich GG1 /AC: RSP00615//OS: Lycopersicon esculentum /GENE: rbcS3A/RE: C-rich GG1 /TF: unknown 796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1 955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF ------------------------------------------------------------