66 Monocot Plant Promoters with experimentally verified TSS(the first 51 nt of transcribed region, putative TATA- and CCAAT-core motifs are indicated in upper case letters) > PLPR0037 ..AC:D15051 ..OS:Hordeum vulgare ..GENE:Ids-2 ..PROD:ids2 ..[ -200: +51] ..CDS:+86 ..TSS:201 (+1) |Monocot Plants ccatactagacgacgaggacgatttgaacggcaagtttcacgctgtcactcccactctcg ctctcattttattaatcactaacaaacgcatgatttgatcagacacccaaaataggaata ggagatgctatcatcaagcatgcttcttgctgcccagagcatcccacgactacaaaacac ggctggccggaggattataaCACGATCGAGCGACCAATCCAAGCACCTACGCACTCTTCT TTGCTCTCATC > PLPR0038 ..AC:M55449 ..OS:Hordeum vulgare ..GENE:RcaA1 ..PROD:ribulose 1,5-bisphosphate carboxylase activase ..[ -200: +51] ..CDS:+91 ..TSS:201 (+1) # Alternative TSS(s): +7 |Monocot Plants ttggtcttgacggtccaagtcatccaaccggccggccaagacgctcagaacccaatctcc agcgtgtggcctctggggatcgggaggctgatccacaagcaggggtgtgtgtatgccgcc tcctcctccaagctccccacagcagagcagcaatatgccaatccacgtgtatttaaggcg tcacatagctcggcctctatACTTTGAGCAGCAGCAGTATTCATCACTGATCACCAGCAC AGCCGCGCGCA > PLPR0064 ..AC:X87946 ..OS:Oryza sativa ..GENE:ZB8 ..PROD:phenylalanine ammonia-lyase ..[ -200: +51] ..CDS:+137 ..TSS:201 (+1) |Monocot Plants accaccacacagccacagcgccgcacacgaaacttccacaccgcagagcccaaaaacctc ccgttttctctcctactccgcgacgctgaccgtgtgctctcgccttggatcaccagacca tcaccaacccccctccgtcatccgtcctgcaggccacccacccgcctatttaagccgcgc ctccccctccattcccctccAAGAAGAGCCGCACCATCCAGTGCAGTAGTACACTAGCTC TTCTTCACAAC > PLPR0071 ..AC:X64770 S41992 ..OS:Oryza sativa ..GENE:RSs1 ..PROD:sucrose synthase ..[ -200: +51] ..CDS+1222 ..TSS:201 (+1) |Monocot Plants atcagattaaaaaaacatatgttttgattaaaaaaatggggaatttggggggagcaataa tttggggttatccattgctgtttcatcatgtcagctgaaaggccctaccactaaaCCAAT atctgtactattctaccacctatcagaattcagagcactggggttttgcaactatttatt ggtccttctggatctcggagAAACCCTCCATTCGTTTGCTCGTCTCTGACCACCATTGGG TATGTTGCTTC > PLPR0110 ..AC:X78988 ..OS:Zea mays ..GENE:MPI ..PROD:proteinase inhibitor ..[ -200: +51] ..CDS:+205 ..TSS:201 (+1) |Monocot Plants tcagcgccactacgcgcgctggaaaatgctgactattttggctgcaagcatgggataacc atggattttttttccctgcagtgttgctatctgttctttgtttcgtagtggctgtttatc ctcgtgtgcctcgcgtgcgtatatacacacacgtcctgcctgcacgcaacgcagctctat aaatacctcatcaccggtgcACTCGCTTAATATATATCCAACAACCAGCAGTGCAACAAG CAAGATTTACC > PLPR0121 ..AC:U14599 ..OS:Zea mays ..GENE:Bz2 ..PROD:unknown seed protein ..[ -200: +51] ..TSS:201 (+1) |Monocot Plants caatgttattaccaacacgtgctgttctgctctcgtgtaatgtccagctacaagcacgcg cgcgagccgaatttggacgcaccagaatcagttagctcgcaccaacccgcacgagcaccg accggTCAATgacacgactcgccagtcgccactaccggttcccgtttaaattgccggccg catcaagctgagggctgaggCAGAGAGGTGCCAACAGAAGTCACGTCGAGACCAGCCGGC CGGCCGGACTG > PLPR0139 ..AC:X02382 ..OS:Zea mays ..GENE:sucrose synthase,EC 2.4.1.13 ..PROD:sucrose synthase ..[ -200: +51] ..TSS+1142 (+1) |Monocot Plants attgagtgcgccatcaggatttggaaattctggttttgagtaatactgtaatttggcatt atccattgccgagtttccaagctccgtcagcttgaacgtggacccctaccatctgcacca gctcggcacctcacgctcgcagcgcatggagcctaggagcagctgcccgtctatttattg gtccctctcccgtcccagagAAACCCTCCCTCCCTCCTCCATTGGACTGCTTGCTCCCTG TTGACCATTGG > PLPR0165 ..AC:X13908 S47120 ..OS:Oryza sativa ..GENE:cab1R ..PROD:chlorophyll a/..[ -200: +51] ..TSS:201 (+1) |Monocot Plants aagaatcttcgagaaacttataaactccgccgaaaaatctcggacaaacccgcggctcac acgcctcctcgcaccaaaacccacctagaatatcctctccttggccacgcgcgcacatca gctcCCAATctcccgccccaggaggcaatcccccctcgcttcccgcgctatttaaactcc cgcgccatctccaactcccaACTCACACTCGCTCGCTCATCGCCATCTCTCTCAGCTCTC ACAGCTCACTG > PLPR0188 ..AC:AJ243829 ..OS:Oryza sativa ..GENE:RPA ..PROD:protein phosphatase 2A A subunit ..[ -200: +51] ..CDS:+27 ..TSS:201 (+1) |Monocot Plants tgcttggtttgattgaaccatatattaattagtgatatagtttaggcttgattttgtgag ttatatgcgtggttcactcttgaccttttagattaacatggatttgtttctctgatggaa ccgtgcctaagatgagaaatatatgattataggttttgctagattccaatgaccatagag cactaatcttctttctttacAGTTGTAGGAATCCTTGATAAGGCTGATGGCTTCGATGGA TGAGCCTCTTT > PLPR0189 ..AC:AB013448 ..OS:Oryza sativa ..GENE:PIB ..PROD:Pib ..[ -200: +51] ..CDS:+82 ..TSS:201 (+1) |Monocot Plants ttatttttctcatcaaacaatagcatcttcttctggaaatcgaattcagggcttatatgt tgcttattctgatatataggtctgtcacgaggcgtatgatcatcaactctgccacaaaat ccattcaaaaatagaacagaGCAATggaggcgacggcgctgagtgtgggcaaatccgtgc tgaatggagcgcttggctacGCAAAATCTGCATTTGCTGAGGAGGTGGCCTTGCAGCTTG GTATCCAGAAA > PLPR0190 ..AC:AB024054 ..OS:Oryza sativa ..GENE:OsENOD40 ..PROD:OsENOD40 ..[ -200: +51] ..CDS:+92 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand gggtttgtaagtggaatgagaatttctctagagaaggaatatagttagaattgacatgat gagggaagaacaacctcagtgtgaagtccagcaaatgagcacttggcacagtttttactt tcATTGTcctttctccactaagcatgctgcgctgtccaatttaaaatgctaccatgcaga ttctgggttctttgcaattgATTTCTCTGGAGAAGTACCTGCAGACATCAGCAACCTCGT CAAGGTATAAA > PLPR0191 ..AC:AB030708 ..OS:Triticum aestivum ..GENE:Ahm1 ..PROD:AHM1 ..[ -200: +51] ..CDS:+91 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand tatgtctttttagggatgaacgtatgtgtgtatgtatgatctcgtccgtacagtgtttta aaaaagaaatcacccgagaattttgagcaatgagcaaaattcggattcttATTGGgccgt ccaaggcccatgaaaagccgttggtttatgtcggaatcgtccatgttaaacatcgctatt atcggcacgcacacccagctGATCCATCCCCAATTCGACCATCAGAGAAAAAAAAGATCC ATCCCCAATTC > PLPR0194 ..AC:AF042275 ..OS:Oryza sativa ..GENE:anther-specific protein ..PROD:anther-specific protein ..[ -200: +51] ..CDS:+51 ..TSS:201 (+1) |Monocot Plants attttcacgtatgtaaaagttttacctataaattattaattttcagcggagtaagcatta gtgttatgggttataatcatctggtatgcttaaatctctttacttggacttagttgggAC AATtcgtaatgcattctcgtgccatctctataatacggcctgctagctttcgtcttgtat ctgcacacaagaactagctgGCAAAGTCCTCAAGGCGAACCGCCTCCATCTTCTCCTTCC AGCTCCTCCCA > PLPR0195 ..AC:AF055898 ..OS:Zea mays ..GENE:alt ..PROD:alanine aminotransferase ..[ -200: +51] ..CDS:+69 ..TSS:201 (+1) |Monocot Plants aaaccgcggcagtggtcggcggccccccggtctccttccactcgcttttccggcgggcga ctggcctaaaatcgcctcttgtttgtttgcttccgtcgtcccctctccacgtagagcacg cccccggaccaccttttataagcaccaaccatctggccttgccgcgccgattcgccacga agccgcactgtgagagagggACGCGGCCTGTTGTCCCGGCTTTTAGACGCAACTTCCATC GCTGCGAAGCT > PLPR0197 ..AC:AF077337 ..OS:Zea mays ..GENE:HSP101 ..PROD:heat shock protein 101 ..[ -200: +51] ..CDS:+147 ..TSS:201 (+1) |Monocot Plants ccatgtgtcacacatcgggagcacttcgtcaacaatccaacggtccatgattattaaggc ccacatgtcatagaaccctctggcaccctctcgccgcttcgtcacctgtcccgtcgctcg tcctctcgtttccacggccttctagactcccggcgaacactcccctccgccttcttatgc tcatcccctccgcttccgaaGCACAACATTTCAACCAGAAACACTAGCCGAAGCAAATCC ATTCCACAAGC > PLPR0203 ..AC:AF258609 ..OS:Aegilops tauschii ..GENE:starch synthase III ..PROD:starch synthase III ..[ -200: +51] ..CDS:+28 ..TSS:201 (+1) |Monocot Plants taaaggatcgaagctgctctcggacaaaatggttgaaggacgaaggagcctttttggtgc gcagatctccacgccagagcgttgtattccaattttagttctttccccgtgaggagggga ggctaggcgggcgaggcagaggggatagggcagtcgccgctgcgtggtggactgactggt gtggtgggtggtgggttttgCGGGCGGGGTTTAGTAGGTTCCCGGAAATGGAGATGGCTC TCCGGCCACGG > PLPR0205 ..AC:AF339747 ..OS:Lophopyrum elongatum ..GENE:ESI47 ..PROD:protein kinase ..[ -200: +51] ..CDS:+515 ..TSS:201 (+1) |Monocot Plants gcagcgagcgaccaagcaagcagaaagagacagcccgaagcaggggccggccatccattg acctactaactacgcaatccaatatccaaatcccgtaccctgaaccagaagcagccgcgt cttcttcctcccaaccccatgtgggggaggctcagctaggtggctttgcccaggtgagca ggaaacgacccgccccgtgaAGAGAGCTTCGTGTCTTTCAACTTCTCTTGGGTTGGTTTT GGAGAACAAGG > PLPR0208 ..AC:AF395819 ..OS:Oryza sativa ..GENE:Reb ..PROD:transcription activator REB ..[ -200: +51] ..CDS:+157 ..TSS:201 (+1) |Monocot Plants caaactaccctcacccagtagttacaaacgcatattttgccgttagttaattattatccg gtaaagaaggtaaagaagattggtagtaatccaaaattttcccaaccccaacctcggaac aaaaaccgcgtagtatttgtcgtaaccaggagcatccgagtcattaatttacacccaaac acaaaaaattagcagcacgcAGCCGCCTTCCCAATCCTCTCCTCTCTCCTCTCCTCTTCT CCAAGCGGCAA > PLPR0233 ..AC:X65606 ..OS:Hordeum vulgare ..GENE:BKIN12 ..PROD:protein kinase ..[ -200: +51] ..CDS:+117 ..TSS:201 (+1) |Monocot Plants aaactttgcccaaatttggcaagggaacttcaccaatttcgttgaccattggccacactt gaccttgccattcatgtcccatagctgtcttttatggccagcccactcatttcacactca aggccggcctctaacaagtggcatgctgcaaatatttcatattattcatgatcagtatat tcagcgcgcgtacgtagcatCTTGACGCATATGTTTCACCAGTTCAAAGGGGTGCATCAA TCTTGTGTCCA > PLPR0237 ..AC:L08425 ..OS:Zea mays ..GENE:Zm-ER abp1 ..PROD:auxin-binding protein ..[ -200: +51] ..CDS:+321 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand catcttttgatgctatatatacaaagatggtgcttttgatggtatgtatccaacaagtgg ttcttttaatagtgtagatccaattttctctaagggtgcattcgtttatgccggatttgg tccagaatcattccagctcATTGActcttatataaattaaacaaacaatccagctaggaa tcattccgggtgctcaatccACTGGAACCGAACAAGCCCTACATATATGCCGGTTGGATT CTTGTTGCCTT > PLPR0239 ..AC:U33175 ..OS:Oryza sativa ..GENE:SPS1 ..PROD:sucrose phosphate synthase ..[ -200: +51] ..TSS:201 (+1) # Alternative TSS(s): +3 |Monocot Plants tttcagtttgtaaccaccggatgacgcacggacggctcggatcatcccgaaaagatcaac cgcggcgcgagcacgagaccaccgtgggccccatggcccaccgacttacACAATctctcc cactgccatgcgggcccacaccagcaacagtccagtccagagagccccgaactcctccaa acccggggggccacaccctgCCACGTGTCACCCGCCAGCCTCCCTCTCATCCTCTCTCTC CTCGTCCAGTG > PLPR0242 ..AC:D29966 ..OS:Oryza sativa ..GENE:CatA ..PROD:catalase ..[ -200: +51] ..CDS:+32 ..TSS:201 (+1) |Monocot Plants accttatcctcgtccagttcctgtgggacccaaccatgcagtatggccacccgggcccac cagtcagtgtgtggcaccggtctccggtaagctcaccggggaggtcagtgctcctcacca cctcccgctatataacctttaggcaggctgtctcaccgagcaagctggagagctagcaga aacaaacccctctcactcccAGATACCTGCTGCTGCCACTAGCCCACTACCATGGATCCT TGCAAGGTCAG > PLPR0243 ..AC:L35844 ..OS:Oryza sativa ..GENE:RGA1 ..PROD:G protein alpha subunit ..[ -200: +51] ..CDS+1580 ..TSS:201 (+1) |Monocot Plants ggggttccacgtgggccctgcactgactcagccaccacgttaacaaaaccggaaagcaat actaccttgggattaaaagtggtccgtttgcaagattaggggttcagggccgtgtaaaac tcaacgacaagataagggaccttagatgaacttttttgggagatgaggcgcctgtgcata tgacccataggcaggcgacaCCGCGGCAGAGCGGCGCTGCACGACCTCCGCCTCCCCAAT CCGTCCCGTCT > PLPR0252 ..AC:M63224 ..OS:Triticum aestivum ..GENE:germin gf-3.8 ..PROD:germin ..[ -200: +51] ..CDS:+102 ..TSS:201 (+1) |Monocot Plants gccctaggctgaggagtgtcttgcctgctgcttaacattttctgcctccatatatgttgt tgcatatgtttccttccgtgctaagcaacgatccttgagttagtacatgatgtggtgctg agattactttgttttcgctgcagttatcagttaaccacaagtgcatttgcgtgctaattc ccaacaatatgccacccgcaACTCATCCACCATAGCTCAGCAGCAACCACCAATGCCATA GACACTCTCGG > PLPR0254 ..AC:U32636 ..OS:Zea mays ..GENE:Y1 ..PROD:phytoene synthase ..[ -200: +51] ..CDS:+14 ..TSS:201 (+1) |Monocot Plants ccaaaaagcgggcttcgtgccgggctcacgggcctcgtgctttttggccatctatgagcc gcacacttagcatacatacgcaagaagaggagaggccggaggtgcgcgtgctccttgctg ctgttctgctgactggtctcaccatctcatctcatcccaccaccaccaccaccaccacca ccaccaccatctttaggataAGATAGCAAATATATGGCCATCATACTCGTACGAGCAGCG TCGCCGGGGCT > PLPR0259 ..AC:AJ223470 ..OS:Zea mays ..GENE:PHYT I ..PROD:phytase ..[ -200: +51] ..TSS:201 (+1) |Monocot Plants acaacaccaacaagaccagaccccacccccttccctatcaacggagggatgatatattat ttaagtgcatgcgcgtgctgcacgctgttatggacctatttggtaggactaggagtagga tatatatcacaaagttgtatacctataaatagctcgctttgatcatatgatctgctgcct tatacgaaacatagctactcCTACTACTCAAATCCATCCTTATTGTAAGTGCGGTCTTAT AAGCTACTACT > PLPR0260 ..AC:AJ223471 ..OS:Zea mays ..GENE:PHYT II ..PROD:phytase ..[ -200: +51] ..TSS:201 (+1) |Monocot Plants tctactattatattcactctaaatcatatgtgttaatactagagtacctaaacaaggtct taagtgcatgcacgtgctgcacgctgttatggacctattaggtagtagtaggtcgagtag gatatatatcacaaagttgtatacctataaatagctcgctttgataacatgatctgctgc cttatacgaaacatagctacCTACTACTCAAGTATCCATCCTTATTGTAAGTGCTCTTAT AAGCTACTACT > PLPR0269 ..AC:X60135 ..OS:Zea mays ..GENE:cat1 ..PROD:catalase-1 ..[ -200: +51] ..TSS:201 (+1) |Monocot Plants ctgcaaatgggtgttatgtctgttcccctcgtctctgcaagtaggccaccctcgccgacg ggctgaatcatgtaaccaagaagtccacgtggaggtggaagaggGCAATatggacagcga ggagagcacgaaaccaccgccgtgccgtgccagtgccatcctccctccattgtttcccgg ctctccgtcccttgggagttGGGCCTTGGCATTTCCTTAAGATAAAAAAGGGGGGAAATC GGCTTCCTACT > PLPR0271 ..AC:X54046 ..OS:Oryza sativa ..GENE:PCNA ..PROD:proliferating cell nuclear antigen ..[ -200: +51] ..TSS:201 (+1) |Monocot Plants caggtgggcccgtactccaccatggtcccacatgtcagctgaatcttccactgcaagaag cgggaaacatttcgggtggaggcgggtttccccccaatttctccctccatttttttttcg tctcgcgtcccccaaacccctccctattaatctcccccttccccctttcttcccctcgcc gccgcctcctcctcccaaacCCCACAAGCGAATCCTAGGGTTTCTCGCCTCGCCGCCGCA TCGCCGCCGGG > PLPR0274 ..AC:X53675 S54871 ..OS:Triticum aestivum ..GENE:POX1 ..PROD:putative peroxidase ..[ -200: +51] ..CDS:+58 ..TSS+1287 (+1) |Monocot Plants gatcgtcagccatcatagaccaatcgaccatctgttatggatgcttgctagctagactag tcagacataaaatttggatactttctcccaactgggagacggggactgatgtgcagctgc acgtgagctaaatttttccctataaatatgcatgaaatactgcattatcttgccacagcc actgccacagccagataacaAGTGCAGCTGGTAGCACGCAACGCATAGCTCTGGACTTGT AGCTAGGTAGC > PLPR0275 ..AC:M16991 ..OS:Triticum aestivum ..GENE:Amy3 ..PROD:alpha-amylase 3 ..[ -200: +51] ..CDS:+57 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand cggcagtaattaatagacaaaactttagctcctaatccattttatctcagaagccagcgg tccttatccatgcggatatctttggagaaaaattaaggagaATTGAtagtttttactagg cacctactaatctctaagctccaagtacctataaatacaagcgagctcaagcattgccaa accaaggagtagtcgtcggtCCAGGAGTCCAGATTTCATAGGAAGTAGAGGCGAGCTGCA CTGCAGACTGT > PLPR0284 ..AC:AJ704770, AY466108 ..OS:Oryza sativa ..GENE:Ltp1 ..PROD:lipid transfer protein..[ -200: +51] ..CDS:+124 ..TSS:201 (+1) |Monocot Plants atgtaagtgtaaaactattggaagtatgtgtccaattttttctagaacttttgtgacatt tgctaatttgatatatcagggtgtgtatataagaaaagtttttgtgtatagaatatgttc tctaattataggtggactattccgcgtagtagctacatttgacttggtcgatgcatcggc acagatgaaataatagctatTTAAAGCCCCCTACATTCCCGGGAATTCTCATCGATCGAT CTCACCTGCAG > PLPR0297 ..AC:M95172 ..OS:Hordeum vulgare ..GENE:Kas12 ..PROD:beta-ketoacyl-acyl carrier protein (ACP) synthase I ..[ -200: +51] ..CDS:+169 ..TSS:201 (+1) # Alternative TSS(s): -3,-2,-1 |Monocot Plants aacaaatcagttgatctaatattttttcagtcaactgatccatgccaggcccttattttc ctccatttgaaatctagcatgtttctcttccaaaaagatgtactcctattttttataccg ctcaaaaaaaaacctcctatttttcataaacacgcagtagtaactgaaagcgacagttct gatttctgcccctcccaatcCAATCCACAATAAACCTCTCCCTCCAAAAATCCATCCATC CATCTTTCCGC > PLPR0304 ..AC:X00043 ..OS:Triticum aestivum ..GENE: H4 ..PROD:histone H4 ..[ -200: +51] ..CDS: +68 |Monocot Plants aaatttcgagctgccgccacagctctgacccagcccgccaaaccaccggtccaatctctc ggccacgtcaccgatccgcggcatctctcccccggatcgccgtctcgaccgtccactcca tccgcatccaacggcagccacacgcctcctccaacctctcgacccctttaagacgccctt cgccccacccagcaaatcacAGCACCAGACGCCACCCACCACCGTTCCTCCCATCCCACA CTCGCTCGCAG > PLPR0311 ..AC:X14172.1 ..OS:Oryza sativa (indica cultivar groupp) ..GENE:OSPHY18 ..PROD:phytochrome ..[ -200: +51] ..CDS:+2753 ..TSS:201 (+1) |Monocot Plants ggtaaatccgcgacacctcacctccccacggcgaccccatccgcgccggccggtgatcgg ggtgatgggggaaggatggggccggtgcgtgcgtgcgatgcgacgcgagccccggcctaa gcacagcacagctgactagctgagcccccacaccatcacaggctaggctatttatttatt cagctcgccactgccacccgAGTGCGGCTGCCTTGGCTTTGTCTCGTCCCGTCTCGTCTG CCTCCTCCTCT > PLPR0321 ..AC:AB058924.1 ..OS:Hordeum vulgare (cultivar:Igri) ..GENE:HvPKABA1 ..PROD:protein kinase ..[ -200: +51] ..CDS: +193 ..TSS:201 (+1) |Monocot Plants tctgtcagaaatctccacggggcggcacggttagaatcttttatcgtgcatccgtgatga caggatttgatgttagatcttttgtacgttggaccgcgacgtcgactagtaacacacgtc gcgcctggagctccgtgcgacgaaaggtgttcgaattgggttttcccttttctagcttcc agacggcacccgcggcgacaCATGGCCGACGTCTCTCGAGTTCGCCCCCATCCTCATCCC TCATCGCCCCC > PLPR0323 ..AC:AF285176.1 ..OS:Musa x paradisiaca ..GENE:ACT1 ..PROD:actin ..[ -200: +51] ..CDS:+1055 ..TSS:201 (+1) |Monocot Plants ctcgagacagctcattgacgaacacaaaaggcatattcgacttccgtgtatagctcaagc gacaaaacactgggtttaatctttttattcgacattctctgtgggatccgcaacacgtat cctaaatcccataagtcgagttaatagaaagaccatttaagctgtctcgtcgctgggtag agacacaggagctgcttgttCTTTTCCTTTTTCTCTCTGTTTATCTTTGATCTCGCTACT GCAATGATACC > PLPR0325 ..AC:S82324.1 ..OS:Zea mays=maize, cv. Merit ..GENE:CaM kinase homolog MCK1 ..PROD:calcium/calmodulin-dependent protein kinase homolog ..[ -200: +51] ..CDS: +119 ..TSS:201 (+1) |Monocot Plants gcgaggcgggctttcgccgtatgtattgtacgcgcagagaagactcttttgcgtactgcc ccttggggagtgggtggattcacggtcgcctcccgaggacccgaccccgccccagctagc tgccgcgctgtaaccgagggagggggaggagagagaaataacggacgccacctctcgctc cctccctcctcctcctgtctCGCGCCCCCCTGGCCCCTGCTTCTTCTCCTTCCCCTTTCA TTCCCAACGAG > PLPR0328 ..AC:AJ306592.1 ..OS:Oryza sativa (subsp. indica) ..GENE:tub-16 ..PROD:beta-tubulin 16 ..[ -200: +51] ..CDS: +290 ..TSS:201 (+1) |Monocot Plants taagatacttgtggacttttgattttgggggatttcaactgggatatgtataagctattc ctgcagttctgcttcactatgaggcatttcgagtgtatttagcttttagcctataaatcc gatgccagaataccgatccatttttaggtggtctggtgtgtatgatgatgcatttagatg gaccatcggtgattgaactgTGAAGACACTAGGTTTTAGCCATTTTAGCATACGAAACTC CAGATCTGGCT > PLPR0331 ..AC:AF209212.1 M73029.1 ..OS:Zea mays ..GENE:P (P1-rr) ..PROD:myb-like transcription factor (P) protein .. [-35:+50] .. ..CDS: +321 ..TSS:201 (+1) |Monocot Plants cacgacctcggcgccatagcctatggcgccgagcaaagggtccaaaactgcatttaaaat ttttttaggtctaaacgtgattttacttctgtttaagggctaaaatacaaacgtgcactc tgcactctactaagcgctagtgtacgtacgtacgtactccgtccgctgctatattatggc cggccgtggcgtgccctctcTAGCCAGCACAGCACACACACTGGAAAGTGCAAGCTGTAG TGAGACCTGCG > PLPR0350 ..AC:U83904.1 ..OS:Hordeum vulgare (subsp. vulgare) ..GENE:LOX1 (lipoxygenase isoenzyme 1 of LOXA (Lox:Hv1) ..PROD:lipoxygenase isoenzyme 1 ..[ -200: +51] ..CDS: +68 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand accggagcgcgccatgcgaagcacgaggagggcacgtcaccgtccgcgcgcagcacgtgg agagcacgtcgccgtccgatccatctctccaaagccgagcgccacaccaccggacccgga ccggcctataaATTGCccggaccgagctgcaagcagctcctcacacacactcacgcaaca cacatccatcttcactgaaaAGTGAAAAACAGTGTGCTGGTGCCATTGGTTGGAGCAGTG AAAGCGAGGAG > PLPR0371 ..AC:AF121139.2 ..OS:Oryza sativa L. subsp. indica ..GENE:RIM2 ..PROD:RIM2 protein ..[ -200: +51] ..CDS: +149 ..TSS:201 (+1) # Alternative TSS(s): +2 |Monocot Plants | CCAAT motif on reverse strand cgagcagggccacaaaaagttggataccactctggagttcctgcaatggaaggcaaaaaa tggtgttagtgacaaggcatttggcgatttattgaaactcgtcaagaacattcttccgga gggaaacaaATTGCccgtgacaacgtacgaggctaaggagatagtcctgccctctaggac tgaagttcagagattcacgcATGTCCTGTTTGATTGTATCCTATATCGCGGTGAGGGGTA CGAGAACCTAG > PLPR0384 ..AC:X15711.1 ..OS:Zea mays ..GENE:ANT-G1 ..PROD:adenine nucleotide translocator ..[ -200: +51] ..CDS: +221 ..TSS:201 (+1) # Alternative TSS(s): +2 +24 |Monocot Plants tataattgcacttttatctgtcattgacttaatgtttatacacaggctctctttttcaat taactgtgttgagctttggcttttactctgttgaaacacagaaaatatgttgtttctgta gctttgttactatataatatgcatcttttttacacacagttagacgtggagatctgttat tctttatgcactatcctaagTTGTGTGTCTTGATATTATGTTGCAGCCAATAGTTTTCAG GTGGCAATGGC > PLPR0385 ..AC:X15712.1 ..OS:Zea mays ..GENE:ANT-G2 ..PROD:adenine nucleotide translocator ..[ -200: +51] ..CDS: +221 ..TSS:201 (+1) # Alternative TSS(s): +2 +19 +24 |Monocot Plants | CCAAT motif on reverse strand gtatgtttgtatagttgcattcattgtttatttctgtctaatagtttatctgttagtgtt tgcacggaggctctctgcttcagttagatgtgtctagctttgatttgttgttactctatA TTGAaactgtaaaatatactcatccttttttgcacaggtgcggaggtcttattttgtttc tctttatgtaatgtcctaagTTTTGTGTGTTGACATTATGTTGCAGCCAACAGTTTTGAG GTGGTAATGGC > PLPR0393 ..AC:AF064562.1 ..OS:Hordeum vulgare subsp. vulgare ..GENE:sbeIIa ..PROD:starch branching enzyme IIa ..[ -200: +51] ..CDS: +453 ..TSS:201 (+1) # Alternative TSS(s): +3 +5 |Monocot Plants gttcgataccgttccccaattgatctgcatgaatgagagagatagctggattaggcgatc gcgcttcctgagcctgtattttttttccgtgcgggtaaatgcgttagtgttacccaggcc ctggcgttaccacggctttgatcatttcctcctttcattctgatatatgttttcccactc tttttcttcctgttcttgctGTAGCTGCAAGTTGTAGCGCTGTTTCACTATCGTAGCCAT CCTTGCATTTG > PLPR0394 ..AC:AF064563.1 ..OS:Hordeum vulgare subsp. vulgare ..GENE:sbeIIb ..PROD:starch branching enzyme IIb ..[ -200: +51] ..CDS: +124 ..TSS:201 (+1) |Monocot Plants gccaccgcaaaaccccaaacctcttcgcccccatgctaccatccatgcagccgtccgccc gcgcgcgcgcgttggccacgccacccggtggtggccaggccaccacgccgccactctcgc gtgaaggctccgtccgcttcctcctagtcccactctctgcccgtgctatatagcatccgc cctccgccccctaccaatctTAGCACACCCCCCTGCGCCTCCTCATTTCGCTCGCGTGGG TTTAAGCAGGA > PLPR0395 ..AC:AY137518.1 ..OS:Hordeum vulgare subsp. vulgare ..GENE:hir1 ..PROD:hypersensitive-induced reaction protein 1 ..[ -200: +51] ..CDS:+1671 ..TSS:201 (+1) # Alternative TSS(s): +9 |Monocot Plants tataataaatttgatcatttaaaaaatattgtataaggttgggtttatgttaaaaccata tgcataactggtggggtcaacatggtatccaaaccctattcatccgggctggaatcccca tccgttatttatttccgttttcctcgacgcgcaagaacttttctcccagcttataagtgg cggaggaggggaggcggaagAAGAAGCCAACCCAACCAAGCGTTCAAGCAGAGCAGACGA CCGGCCGGACG > PLPR0396 ..AC:AY137517.1 ..OS:Hordeum vulgare subsp. vulgare ..GENE:hir3 ..PROD:hypersensitive-induced reaction protein 3 ..[ -200: +51] ..CDS:+2159 ..TSS:201 (+1) |Monocot Plants cagcgagctgcccgttgttgctcctgctttcgctccgcccgccggctggcagccaactga aatccggtaccagcgctactctccggcgctaatcgcgatgattttcgcagtaggggggtc ttggactcctccgctggtcctcatccacaatgccgactatttagggccgcgccgcggcag cagggaacacaacagacgccGTCCTCACTGCCACTGCCACTTCACCGCTCCCACCTTTCC CCACTCGTCTC > PLPR0397 ..AC:AY137517.1 ..OS:Hordeum vulgare subsp. vulgare GENE:hir3 ..PROD:hypersensitive-induced reaction protein 3 ..[ -200: +51] ..CDS: +244 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand cgcccaagtgggtgatcagtgaattgcttaggatgcgtatactcatgctgattggtctca tttgtctccgtccaagtggatacagataacaacgggtataATTGAacaggctgtagacct gtagtgtgcccttgcttatagggcgcattgcagatacctgccttcattgtaaagatccag cttatttgtcatttggccttATCCTTGTACCAGCTGAGCTTTTCTCTTTTGCCCTGCCAA TTCAAGTTTCG > PLPR0400 ..AC:AJ238785.1 ..OS:Zea mays ..GENE:mus1 ..PROD:putative DNA mismatch repair protein ..[ -200: +51] ..CDS: +80 ..TSS:201 (+1) |Monocot Plants tgataatattttaccaaatatttatataatatcgaaacaggttataagtttttcaaagac cactgtattttggcttctgggagagagacccacgacgctccattcccccacgaaatgaga ctccgcgcgcaaaagccccgtttctcgccgcgcgcgagaaaaccctaccttttcccgcca cccgtgcgcatttagtcgagCACATAGTCCGCACTCCGCACCCCGCATCACCACCGCCAC CACCAGAACCT > PLPR0404 ..AC:AF072725.1 ..OS:Zea mays ..GENE:Ae ..PROD:starch branching enzyme IIb ..[ -200: +51] ..CDS: +100 ..TSS:201 (+1) |Monocot Plants ccacgccgccgctggagctgcgcgtgcgcgtgtgcgcttggaccgacgcgcaacggcctg cctcgaccgcccgtgcacgccactgctcatgcagccgtccgcctcgcccccgccccgaac tgccgaggtcgcgtgaacgcccactcccctcaccgctcgtctccgtgctatataggcagc ccgcgcccctcctaattgtaGCCCTGCAGTCACCCAGAGCAGACCCGGATTTCGCTCTTG CGGTCGCTGGG > PLPR0407 ..AC:AB026837.1 ..OS:Oryza sativa ..GENE:OsPSK ..PROD:preprophytosulfokine ..[ -200: +51] ..CDS: +102 ..TSS:201 (+1) |Monocot Plants | CCAAT motif on reverse strand tactctaccacaaaactttggttgtttttgctatcatctcaaggccactgcagcatgcgc attgcgcacgtacgagatgctactctttccaaggaaccgatgtctctctctctctctcca gcctccATTGCttataaatatgttcctccttcctatactggtaatggcagcaaagcaaag aaacaaagaagaagaagaaaGAAGAAGCAGCAGCAAAAAAGTTGATCAGTTAATTAGCAA GTGTGTTCTTC > PLPR0447 ..AC:X53596.1 ..OS:Oryza sativa (indica cultivar-croup) ..GENE:Osgrp-1 ..PROD:glycine-rich cell wall protein ..[ -200: +51] ..CDS: +224 ..TSS:201 (+1) |Monocot Plants atgaataaaaatagtcgtgttagtcttacctgatgtgcactctaaactcgattacccacg gtttttatgatactgaagcggaggccctcttcagaagtaaaccacaagtgacaacacaag gttaaaaaaaatgagataattaaatatgagtgagagttgtttctggtgttgtttgcttcg acagagcaaaatcttgcctaCTTTGATCGATGACTACTTTGACTTTCTGTTTGGGCCACC GTAGAAAGACA > PLPR0448 ..AC:X53596.1 ..OS:Oryza sativa (indica cultivar-croup) ..GENE:Osgrp-1 ..PROD:glycine-rich cell wall protein ..[ -200: +51] ..CDS: +34 ..TSS:201 (+1) |Monocot Plants gtagaaagacataacagtgtacacagagatgcacagctcgtttttgactgattgcaatct aacctttgaattgagttacctacttactcgttaactagagcttgcctaactaatctacct acctacatgccatagttggttagctcgcaggtgtacacaatacgcatccaaatttgacct ataaatactcagtgcaaacaAGCACTTGGTACTCATCTGCAGCACTGAAGTAAAATGGCC AGGAAGGTAAT > PLPR0464 ..AC:AJ288901.1 ..OS:Dendrobium grex Madame Thong-IN ..GENE:DOMADS1 ..PROD:MADS box protein DOMADS1 ..[ -200: +51] ..CDS: +177 ..TSS:201 (+1) |Monocot Plants atattagcatcgtcgagattcatccgtgcggctcccatccactaccaacacgtgtccttt catttattcaataatatggctcccgcctcggcgcctgatcccgttgttggttttaggggt ttctctctctctctctctctctctctcctttctctataaccacttttaccacccacaaca ctacgagagtaaaagataaaAAGGAGAAGGCAAATGGGGAAGTAGGGCAACGAATGGGGC CTCCCCTCTTC > PLPR0465 ..AC:AJ288901.1 ..OS:Dendrobium grex Madame Thong-IN ..GENE:DOMADS1 ..PROD:MADS box protein DOMADS1 ..[ -200: +51] ..CDS: +65 ..TSS:201 (+1) |Monocot Plants ttaggggtttctctctctctctctctctctctctcctttctctataaccacttttaccac ccacaacactacgagagtaaaagataaaaaggagaaggcaaatggggaagtagggcaacg aatggggcctcccctcttcacgtcttgctttcatggcctaaaaatggaaaaaatgaatgc ctcatctcttccctcagaggAAGGAAACTTAGCTTTCTGATCTCCAGTGTTTTAGCTGAG AACGAAGGGAG > PLPR0466 ..AC:AJ288901.1 AF198174.1 ..OS:Dendrobium grex Madame Thong-IN ..GENE:DOMADS1 ..PROD:MADS box protein DOMADS1 ..[ -200: +51] ..CDS: +27 ..TSS:201 (+1) |Monocot Plants tctctataaccacttttaccacccacaacactacgagagtaaaagataaaaaggagaagg caaatggggaagtagggcaacgaatggggcctcccctcttcacgtcttgctttcatggcc taaaaatggaaaaaatgaatgcctcatctcttccctcagaggaaggaaacttagctttct gatctccagtgttttagctgAGAACGAAGGGAGAGAAAGAGAAAGAAATGGGGAGAGGAA GGGTGGAGATG > PLPR0473 ..AC:U45858.1 ..OS:Zea mays ..GENE:gpc2 ..PROD:glyceraldehyde-3-phosphate dehydrogenase ..[ -200: +51] ..CDS: +76 ..TSS:201 (+1) |Monocot Plants tgcccatgcgtcttctagagaaaggcggacggacaggtcacccccgcacctcattccagg agttgcatttcgctttctcctttatttatttataccaataaaaaataaatccgccttttc tcctccctatcgtgtgtctcctctcgccggctttaaaaacgcacacaagcgctaaaaccc tctccaccgtccacctcagcTCCCATATCCGCTCCCCTACCTCTCCAGCATCCTCCCGTC TCCGTCGTCTC > PLPR0495 ..AC:X83077.1 ..OS:Zea mays ..GENE:Fer2 ..PROD:ferritin ..[ -200: +51] ..CDS: +109 ..TSS:201 (+1) # Alternative TSS(s): +6 |Monocot Plants ctgagcttgctttgagccctcctcgctcgctcgctcaccttcttatctcctccatccatc caaaaatatctccatgcgctcagacggggacgagacgacgggagaaccaccaccagggcg cccgcccgccacgcgcctcctccaaatcccagccgtccacgtgtcccagtccgcgacccc cacgcgcctatatccatccaTCATCCTATTCCTATCCCGCCACATAGTCCACCACCTATT ATTCCGCTCCC > PLPR0505 ..AC:AJ312199.1 ..OS:Oryza sativa ..GENE:OsEPB-89 ..PROD:ethylene responsive protein ..[ -200: +51] ..CDS: +42 ..TSS:201 (+1) |Monocot Plants atcaatttaacctgcaaccaacttttgccacaatttttttaaggagacgaattgacaacg aggcagcccacagacttcggcgcccacaagatcgggagatagcggcccacggagactaca cagcccatccccacatcagccagcgacggcgacgccgacgacgacgacttttcctctatt taccactcccgcgtcgcgccATAGCGACGTCTCTCCCGGAGAAAGAAGAGCGCGCCGCGC CATGTGCGGCG > PLPR0515 ..AC:L08425.1 ..OS:Zea mays (cultivar W22) ..GENE:ER-abp1 ..PROD:auxin-binding protein ..[ -200: +51] ..CDS: +111 ..TSS:201 (+1) |Monocot Plants aacaagccctacatatatgccggttggattcttgttgccttatttctgtccaagcaagat tttcgttaacagaggagagcaaaaaaaaaaaaaaaaacaggtcgtccggcctggcaaggc gaggcttgtcctgcgtggtgcggcttgtctctgggccggctgctcccacaggctatctga gccgctccatttgatcggacAGTCGACACCGTCCGAGCGGCGATCAAAACCACCTTCGAC GACTACGCCGA > PLPR0519 ..AC:AY227363.1 ..OS:Zea mays ..GENE:mads2 ..PROD:MADS-box transcription factor MADS2 ..[ -200: +51] ..CDS: +311 ..TSS:201 (+1) |Monocot Plants gccatttaggggtaatgagcagcggccaataaacaaagccctggggtagccaatcgggtg tcgccgtgcgcgcgcgcgcgcgtctggcctcctgccctcctcctccctttccttgctaaa taaagcaagtagcagataggggaaagtctgctcgcaagttgcatccgccctgcgccaaga aaagccatcgttcttcccacAAACGCACACATAGAAGCATCATTCCCCTCTCGGCTAGCT TCCTCCTCTCT > PLPR0531 ..AC:AJ512944.1 ..OS:Hordeum vulgare ..GENE:cor14b (=COR14b-G1) ..PROD:cold regulated protein ..[ -200: +51] ..CDS: +103 ..TSS:201 (+1) |Monocot Plants cctcacgggtatggccgccacgcgcaccacacaaaccgtcgacagtctcgcacgcaccgc cgcaccacacaaccttgtcgaccaccccgtgtcgccatgcacccgcagcgatcgcggctc gtcgtacgtacgtggaacccctccacatgccctcgcgcccggcctacaaaaggccggcgc tgcacctctctcgtcctcccACCGTCGTACCACCGCAAGTGCAAAGTAGCTCATACGTAC ATCCATCGGCG > PLPR0546 ..AC:AF122050.1 ..OS:Hordeum vulgare ..GENE:limit dextrinase (note: pullanase) ..PROD:limit dextrinase ..[ -200: +51] ..CDS: +78 ..TSS:201 (+1) |Monocot Plants atgatggctgacacatgaaccaacttgttgttggccgcacatttctttacgcaactctta taacagaaaaaagtacaaaaaggaagaaataaaatttcttgcaagacataaccgaaaaaa agagctttgttgagttggaaaatagaaaagccaatacggtttttttgtgccgcgtcatgg atagaactgaacggaacagaATCTGTTGGCCCCAAAAAGCACAGAGGAAAAAAAAGGAAG TCTTTCTCTTC > PLPR0552 ..AC:AF265548.1 ..OS:Oryza sativa ..GENE:DMC1A ..PROD:meiotic protein Dmc1A ..[ -200: +51] ..CDS: +86 ..TSS:201 (+1) |Monocot Plants gagcccaagcagtttccagaaggcccaagtagcccaccgtcgcagccggagcaaccgcac tgttcacacacgcaacggcgcaacacaaccacttcgtcgtcttcctctgctgcttccttc tcctccaagcccccgctccgctccgacgacctcgccgcctccgcctacaggtgaggaggt ttttctccgccgcggcggacGCCTCCGCTCGCCGTTCTCGCTTGGGTTTTTGGGTGATTC TGGTTGGGTTC > PLPR0553 ..AC:AF265549.1 ..OS:Oryza sativa ..GENE:DMC1B ..PROD:meiotic protein Dmc1B ..[ -200: +51] ..CDS: +101 ..TSS:201 (+1) |Monocot Plants ccagaaggcccgagagcctcaagtagcccacctcgccgcacgctgcgcaacgcaacggca caagcacaacaccacttagagtgtgtttgtcgtctcgcctctgctgcttccttctcctcc aagccgccgctccgacctcgccgtcgccggtcgccggccgcctccgcctacaggtgagga aggttctctccgccgcagcgGCCTCCGCTCGACGTCTTTGCTAGGGTTTTGGGGTGATTT TTCGGTTGGGT