Individual Characteristics of Genes/Promoters and
Original Data Sources
Monocotyledons: 11 species, 146 genes, 150
promoters |
||||
Species |
PlantProm
DB Accession Number and Gene/Product |
Promoter
Type |
GenBank
Accession Number |
PubMed Links/Refs |
Avena fatua |
PLPR0156: alpha-Amy2D |
TATA |
||
|
PLPR0209: alpha-Amy2A |
TATA |
||
Avena sativa |
PLPR0305: avenin |
TATA |
||
|
PLPR0316: OGI-E1 |
TATA |
2326176 |
|
Aegilops tauschii |
PLPR0203: starch synthase |
TATA |
||
Dendrobium grex Madame Thong-IN |
PLPR0464: DOMADS1* |
TATA-less |
||
|
PLPR0464: DOMADS1* |
TATA-less |
||
|
PLPR0464: DOMADS1* |
TATA-less |
||
Hordeum vulgare |
PLPR0037: Ids-2 |
TATA-less |
||
|
PLPR0038: RcaA1 |
TATA-less |
||
|
PLPR0054: nitrate reductase |
TATA |
||
|
PLPR0055: Per1 |
TATA |
||
|
PLPR0136: B1 hordein |
TATA |
||
|
PLPR0157: Amy32b |
TATA |
||
|
PLPR0167: Amy1 |
TATA |
||
|
PLPR0233: BKIN12 |
TATA-less |
||
|
PLPR0264: CHS |
TATA |
||
|
PLPR0297: Kas12 |
TATA-less |
||
|
PLPR0317: Lem2 |
TATA |
||
|
PLPR0321: HvPKABA1 |
TATA-less |
||
|
PLPR0322: rsh1 |
TATA |
||
|
PLPR0350: LOX1 |
TATA-less |
||
|
PLPR0375: thiol protease |
TATA |
||
|
PLPR0380: plastocyanin |
TATA |
||
|
PLPR0381: 1,3-glucan endohydrolase isoenzyme GIII |
TATA |
||
|
PLPR0386: (1-3,1-4)-beta-D-glucanase |
TATA |
||
|
PLPR0393: sbeIIa |
TATA-less |
||
|
PLPR0394: sbeIIb |
TATA-less |
||
|
PLPR0395: hir1 |
TATA-less |
||
|
PLPR0396: hir3* |
TATA-less |
||
|
PLPR0396: hir3* |
TATA-less |
||
|
PLPR0423: Ltp6 |
TATA |
||
|
PLPR0429: Itr1 |
TATA |
||
|
PLPR0462: prb1 |
TATA |
||
|
PLPR0484: LEA B19.1 |
TATA |
||
|
PLPR0485: LEA B19.1b |
TATA |
||
|
PLPR0486: LEA B19.3 |
TATA |
||
|
PLPR0487: LEA B19.4 |
TATA |
||
|
PLPR0531: cor14b |
TATA-less |
||
|
PLPR0546: limit dextrinase |
TATA-less |
||
Lophopyrum elongatum |
PLPR0205: ESI47 |
TATA-less |
||
Musa x paradisiaca |
PLPR0323: ACT1 |
TATA-less |
[13] |
|
Oryza sativa |
PLPR0001: phospholipase D |
TATA-less |
||
|
PLPR0002: RepA |
TATA |
||
|
PLPR0042: lip19 |
TATA |
||
|
PLPR0064: ZB8 |
TATA-less |
||
|
PLPR0065: GluB-1 |
TATA |
||
|
PLPR0066: gns1 |
TATA |
||
|
PLPR0067: GOS2 |
TATA |
||
|
PLPR0068: GOS9 |
TATA |
||
|
PLPR0069: RAmy3A |
TATA |
||
|
PLPR0070: Ramy3C |
TATA |
||
|
PLPR0071: RSs1 |
TATA-less |
||
|
PLPR0072: Pdc1 |
TATA |
||
|
PLPR0073: OSHSP18.0 |
TATA |
||
|
PLPR0090: Osg4B |
TATA |
7858214 |
|
|
PLPR0152: Ramy3B |
TATA |
||
|
PLPR0155: type II glutelin |
TATA |
||
|
PLPR0165: cab1R |
TATA-less |
||
|
PLPR0171: Osg6B |
TATA |
||
|
PLPR0173: rep1 |
TATA |
||
|
PLPR0188: RPA |
TATA-less |
||
|
PLPR0189: PIB |
TATA-less |
||
|
PLPR0190: OsENOD40 |
TATA-less |
||
|
PLPR0194: anther-specific protein |
TATA-less |
||
|
PLPR0208: Reb |
TATA-less |
||
|
PLPR0239: SPS1 |
TATA-less |
||
|
PLPR0242: CatA |
TATA-less |
||
|
PLPR0243: RGA1 |
TATA-less |
||
|
PLPR0271: PCNA |
TATA-less |
||
|
PLPR0279: GT3 |
TATA |
||
|
PLPR0284: Ltp1 |
TATA-less |
||
|
PLPR0307: Osgrp-2 |
TATA |
[15] |
|
|
PLPR0311: OSPHY18 |
TATA-less |
||
|
PLPR0326: SALT |
TATA |
||
|
PLPR0328: tub-16 |
TATA-less |
||
|
PLPR0351: Waxy |
TATA |
||
|
PLPR0371: RIM2 |
TATA-less |
[11] |
|
|
PLPR0398: Oshsp16 |
TATA |
||
|
PLPR0407: OsPSK |
TATA-less |
||
|
PLPR0420: rubi3 |
TATA |
||
|
PLPR0433: GluB-2 |
TATA |
||
|
PLPR0441: RC24 |
TATA |
||
|
PLPR0447: Osgrp-1* |
TATA-less |
||
|
PLPR0447: Osgrp-1* |
TATA-less |
||
|
PLPR0454: RAG1 |
TATA |
||
|
PLPR0478: Gt1 |
TATA |
||
|
PLPR0479: Gt2 |
TATA |
||
|
PLPR0505: OsEPB-89 |
TATA-less |
||
|
PLPR0532: EP3A |
TATA |
||
|
PLPR0552: DMC1A |
TATA-less |
[10] |
|
|
PLPR0553: DMC1B |
TATA-less |
[10] |
|
|
PLPR0555: CAD2 |
TATA |
[14] |
|
|
PLPR0303: RTS2 |
TATA |
||
Sauromatum guttatum |
PLPR0163: aox1 |
TATA |
||
Triticum aestivum |
PLPR0099: TA-ACS2 |
TATA |
||
|
PLPR0125: LMW |
TATA |
||
|
PLPR0126: HMW glutenin |
TATA |
||
|
PLPR0148: alpfa/beta-gliadin |
TATA |
||
|
PLPR0158: Amy2/54 |
TATA |
||
|
PLPR0159: Amy2/8 |
TATA |
||
|
PLPR0160: Amy2/53 |
TATA |
||
|
PLPR0161: Amy2/46 |
TATA |
||
|
PLPR0162: Amy2/34 |
TATA |
||
|
PLPR0169: germin 9f-2.8 |
TATA |
||
|
PLPR0191: Ahm1 |
TATA-less |
||
|
PLPR0250: sbe1 |
TATA-less |
||
|
PLPR0252: germin gf-3.8 |
TATA-less |
||
|
PLPR0274: POX1 |
TATA-less |
||
|
PLPR0275: Amy3 |
TATA-less |
||
|
PLPR0367: wcs120 |
TATA |
||
|
PLPR0048: GIR |
TATA |
||
|
PLPR0480: cab-1 |
TATA |
||
|
PLPR0304: H4 |
TATA-less |
||
Zea mays |
PLPR0015: sbe1 |
TATA-less |
||
|
PLPR0022: anthocyanin
regulatory B protein |
TATA |
||
|
PLPR0023: Brittle-2 (Bt2) |
TATA |
||
|
PLPR0059: zein protein |
TATA |
||
|
PLPR0107: C1-I |
TATA |
||
|
PLPR0108: c2 |
TATA |
||
|
PLPR0109: Cab-m7 |
TATA |
||
|
PLPR0110: MPI |
TATA |
||
|
PLPR0121: Bz2 |
TATA |
||
|
PLPR0139: sucrose synthase |
TATA-less |
||
|
PLPR0145: Adh2-N |
TATA |
||
|
PLPR0146: Adh1-1S |
TATA |
||
|
PLPR0195: alt |
TATA-less |
||
|
PLPR0197: HSP101 |
TATA-less |
||
|
PLPR0237: Zm-ER abp1 |
TATA-less |
||
|
PLPR0253: cat2 |
TATA |
||
|
PLPR0254: Y1 |
TATA-less |
||
|
PLPR0259: PHYT I |
TATA-less |
||
|
PLPR0260: PHYT II |
TATA-less |
||
|
PLPR0269: cat1 |
TATA-less |
||
|
PLPR0495: Fer2 |
TATA-less |
7649160 |
|
|
PLPR0331: P (P1-rr) |
TATA-less |
||
|
PLPR0336: apb4 |
TATA |
||
|
PLPR0384: ANT-G1 |
TATA-less |
||
|
PLPR0385: ANT-G2 |
TATA-less |
||
|
PLPR0389: p60.1 |
TATA |
||
|
PLPR0400: mus1 |
TATA-less |
||
|
PLPR0404: Ae |
TATA-less |
||
|
PLPR0432: PRms |
TATA |
||
|
PLPR0473: gpc2 |
TATA-less |
||
|
PLPR0474: gpc4 |
TATA |
||
|
PLPR0494: Fer1 |
TATA |
||
|
PLPR0515: ER-abp1 |
TATA-less |
L08425.1 |
|
|
PLPR0519: mads2 |
TATA-less |
||
|
PLPR0533: shrunken-2 |
TATA |
||
|
PLPR0325: |
TATA-less |
||
Dicotyledons: 66 species, 389 genes, 403 promoters |
||||
Antirrhinum majus |
PLPR0024:
deficiens |
TATA |
||
|
PLPR0025:
fil1 |
TATA |
||
|
PLPR0210:
globosa |
TATA-less |
||
Atropa
belladonna |
PLPR0414: AbH6H |
TATA |
||
Actinidia
deliciosa |
PLPR0449: actinidin protease |
TATA |
||
Arabidopsis
thaliana |
PLPR0003: DREB1A |
TATA |
||
|
PLPR0332: FedA |
TATA-less |
||
|
PLPR0004: DREB1C |
TATA |
||
|
PLPR0006: TT1 |
TATA |
||
|
PLPR0007: TMK1 |
TATA |
|
|
|
PLPR0008: AKT3 |
TATA-less |
||
|
PLPR0014: NAT2 |
TATA |
||
|
PLPR0026: Aco |
TATA |
||
|
PLPR0027: ttg1 |
TATA-less |
||
|
PLPR0028: hsp21 |
TATA |
||
|
PLPR0029: PIP1b |
TATA |
||
|
PLPR0030: ribosomal P40
protein |
TATA |
||
|
PLPR0031: sus1 |
TATA |
||
|
PLPR0032: ACT2 |
TATA |
||
|
PLPR0033: ACT8 |
TATA |
||
|
PLPR0034: atC4H |
TATA |
||
|
PLPR0035: His1-3 |
TATA |
||
|
PLPR0092:
SAUR-AC1 |
TATA |
||
|
PLPR0094: beta-amylase |
TATA |
||
|
PLPR0112: pyk10 |
TATA |
||
|
PLPR0122: cor15a |
TATA |
||
|
PLPR0129: nit1 |
TATA |
||
|
PLPR0137: Adh |
TATA |
||
|
PLPR0164: ACT4 |
TATA-less |
||
|
PLPR0166: DREB1B |
TATA |
||
|
PLPR0168: ACP A1 |
TATA |
||
|
PLPR0177: AGL3 |
TATA-less |
||
|
PLPR0179: CAO |
TATA-less |
||
|
PLPR0180: RHL1 |
TATA-less |
||
|
PLPR0182:
calmodulin-binding protein |
TATA-less |
||
|
PLPR0183:
HRT |
TATA-less |
||
|
PLPR0184: FIN219 |
TATA-less |
||
|
PLPR0185: srp30 |
TATA |
||
|
PLPR0186: CRY2 |
TATA-less |
||
|
PLPR0192: atao1 |
TATA-less |
||
|
PLPR0193: CGS1 |
TATA-less |
||
|
PLPR0198: CoA ligase 3 |
TATA-less |
||
|
PLPR0199: RCP1 |
TATA-less |
||
|
PLPR0200: ADK1 |
TATA-less |
||
|
PLPR0202: DEX1 |
TATA-less |
||
|
PLPR0201: acyl-CoA binding
protein 2 |
TATA-less |
||
|
PLPR0204: EMF1 |
TATA-less |
||
|
PLPR0206: SDE3 |
TATA-less |
||
|
PLPR0211: DAG1 |
TATA-less |
||
|
PLPR0212: bcb |
TATA-less |
||
|
PLPR0213: CER3 |
TATA-less |
||
|
PLPR0214: GASA4 |
TATA-less |
||
|
PLPR0215: GPRP |
TATA-less |
||
|
PLPR0216: photosystem II 10
kDa polypeptide |
TATA-less |
||
|
PLPR0217: prha |
TATA-less |
||
|
PLPR0218: ACBP |
TATA-less |
||
|
PLPR0219: ATHATPLC1G |
TATA |
||
|
PLPR0220: AtDMC1 |
TATA-less |
||
|
PLPR0221: nim1 |
TATA-less |
||
|
PLPR0244:
sedoheptulose-1,7-bisphosphatase (SBPase) |
TATA-less |
||
|
PLPR0257: eEF-1beta |
TATA-less |
||
|
PLPR0261:
serine/threonine protein phosphatase PP2A-3 catalytic subunit |
TATA-less |
||
|
PLPR0262:
serine/threonine protein phosphatase 2A-4 catalytic subunit |
TATA-less |
||
|
PLPR0263: 103-1a |
TATA-less |
||
|
PLPR0276: ACT12 |
TATA-less |
||
|
PLPR0285: CCA1 |
TATA |
||
|
PLPR0289: APETALA3 (AP3) |
TATA-less |
||
|
PLPR0294: FPS2 |
TATA-less |
||
|
PLPR0301: hemC |
TATA-less |
||
|
PLPR0306: OPR1 |
TATA |
||
|
PLPR0312: AOS |
TATA |
||
|
PLPR0318: kin1 |
TATA |
||
|
PLPR0324: ATHB13 |
TATA |
||
|
PLPR0341: HMG2* |
TATA |
||
|
PLPR0341: HMG2* |
TATA-less |
||
|
PLPR0342: WRKY6 |
TATA-less |
||
|
PLPR0345: AHA2 |
TATA |
||
|
PLPR0346: AHA3 |
TATA |
||
|
PLPR0213: ER |
TATA-less |
||
|
PLPR0349: aha9 |
TATA |
||
|
PLPR0358: Atgrp7 |
TATA |
||
|
PLPR0366: TGG3 |
TATA |
||
|
PLPR0419: At59 |
TATA-less |
||
|
PLPR0436: ATK1* |
TATA-less |
||
|
PLPR0436: ATK1* |
TATA-less |
||
|
PLPR0442: PAL1 |
TATA-Less |
|
|
|
PLPR0443: PAL2 |
TATA-less |
|
|
|
PLPR0456: ats1B |
TATA |
||
|
PLPR0457:
ats2B |
TATA-less |
||
|
PLPR0458:
ats3B |
TATA |
||
|
PLPR0467:
dhdps |
TATA-less |
||
|
PLPR0469:
vsp1 |
TATA |
||
|
PLPR0470: vsp2 |
TATA |
||
|
PLPR0475: ABT 4 |
TATA |
||
|
PLPR0483: sen1 |
TATA |
||
|
PLPR0490: AVA-P3 |
TATA-less |
|
|
|
PLPR0491: ASC4 |
TATA |
||
|
PLPR0507: COW1 |
TATA-less |
||
|
PLPR0513: PAT1 |
TATA-less |
||
|
PLPR0517: HSP70-1 |
TATA |
|
|
|
PLPR0520: erd5 |
TATA |
||
|
PLPR0522: RCI2A |
TATA |
||
|
PLPR0523: RCI2B |
TATA |
||
|
PLPR0530: rps11 |
TATA |
||
|
PLPR0541: dbp |
TATA |
||
|
PLPR0542: carboxypeptidase
Y-like protein |
TATA-Less |
||
|
PLPR0543: ARR5 |
TATA |
||
|
PLPR0544: REM1 |
TATA-less |
||
|
PLPR0549: SQS1 |
TATA-less |
||
|
PLPR0550: AtMLH1 |
TATA-less |
||
|
PLPR0551: MS1 |
TATA-less |
||
|
PLPR0554: PISTILLATA |
TATA |
||
|
PLPR0575:
HMG1* |
TATA |
||
|
PLPR0576:
HMG1* |
TATA-less |
||
Bertholletia excelsa |
PLPR0036:
BE2S1 |
TATA |
||
Beta
vulgaris |
PLPR0119: BV-16/1 |
TATA-less |
||
|
PLPR0265: BV-70/5 |
TATA-less |
||
Beta
vulgaris |
PLPR0422: BvPAL |
TATA-less |
||
Betula
pendula |
PLPR0130: NR |
TATA |
[2] |
|
|
PLPR0222: BP8 |
TATA-less |
||
|
PLPR0567:
Bplti36 |
TATA-less |
see: Suppl. Material |
|
Brassica
napus |
PLPR0039: napA |
TATA |
||
|
PLPR0116: Bp19 |
TATA |
||
|
PLPR0150: rbcSF1 |
TATA |
||
|
PLPR0178:
oleosin BN-III |
TATA-less |
||
|
PLPR0245:
btg-26 |
TATA-less |
||
|
PLPR0355: Bp10 |
TATA |
||
|
PLPR0453: ACP05 |
TATA |
||
|
PLPR0468: iMyAP |
TATA |
||
Brassica
juncea |
PLPR0392: GSTF2 |
TATA |
||
Catharanthus roseus |
PLPR0013:
CRSD4H |
TATA |
||
|
PLPR0228:
str1 |
TATA-less |
||
|
PLPR0267:
CYM |
TATA-less |
||
|
PLPR0444:
cyc07 |
TATA |
||
|
PLPR0361: cpr |
TATA |
||
Canavalia
gladiata |
PLPR0408: CgHMGY1 |
TATA |
||
Capsicum
annuum |
PLPR0409: PCEL1 |
TATA |
||
|
PLPR0416: CaSIG4 |
TATA |
||
Citrus
sinensis |
PLPR0230: acs1 |
TATA-less |
||
Craterostigma
plantagineum |
PLPR0040: CDeT27-45 |
TATA-less |
||
|
PLPR0113: CDeT6-19 |
TATA |
||
|
PLPR0308: CDet11-24 |
TATA-less |
||
|
PLPR0313: Ss1 |
TATA-less |
||
|
PLPR0314: Ss2 |
TATA-less |
||
|
PLPR0319: CpEdi-9 |
TATA |
||
Cucumis
sativus |
PLPR0302: hpr-A |
TATA |
||
|
PLPR0327: NPR |
TATA |
||
|
PLPR0440: malate synthase |
TATA |
||
Daucus
carota |
PLPR0043: DHFR-TS |
TATA |
||
|
PLPR0337: Inva1*DC1 |
TATA |
||
|
PLPR0510: EMB-1 |
TATA |
||
Dianthus
caryophyllus |
PLPR0044: GST1 |
TATA |
||
|
PLPR0151: hcbt2 |
TATA |
||
|
PLPR0232:
CARSR12 |
TATA-less |
||
Eucalyptus
gunnii |
PLPR0045: CAD |
TATA |
||
|
PLPR0128: CYM |
TATA |
||
Flaveria
brownie |
PLPR0046: pdk* |
TATA |
||
Flaveria
trinervia |
PLPR0047: pdk* |
TATA |
||
Glycine
max |
PLPR0050: GH3 |
TATA |
||
|
PLPR0051: sc514 |
TATA |
||
|
PLPR0098: SbPRP3 |
TATA |
||
|
PLPR0123: Aux28 |
TATA-less |
||
|
PLPR0124: Aux22 |
TATA |
||
Glycine
max |
PLPR0127: lbc3 |
TATA |
||
|
PLPR0147: nodulin-23 |
TATA |
||
|
PLPR0170: SbPRP2 |
TATA |
||
|
PLPR0295: SbHRGP3 |
TATA-less |
||
|
PLPR0343:
tubB1* |
TATA-less |
||
|
PLPR0343:
tubB1* |
TATA-less |
||
|
PLPR0359:
GmPEPC7 |
TATA |
||
|
PLPR0360:
GmPEPC15 |
TATA |
||
|
PLPR0481: hsp70 |
TATA |
||
|
PLPR0509: vspB |
TATA-less |
||
|
PLPR0527: SCaM-4 |
TATA-less |
||
|
PLPR0529: rps11 |
TATA-less |
||
|
PLPR0534: vspA |
TATA-less |
||
|
PLPR0536:
GmPM9 |
TATA-less |
||
|
PLPR0526: N-24 |
TATA |
||
|
PLPR0498:
nodulin-35 |
TATA-less |
||
|
PLPR0399: lox-3 |
TATA |
[4] |
|
|
PLPR0401: hs6871 |
TATA |
||
|
PLPR0503: Gmhsp17.5-E |
TATA |
||
|
PLPR0504: Gmhsp17.5-M |
TATA |
||
|
PLPR0508: Gmhsp17.6-L |
TATA |
||
|
PLPR0514: Gmhsp18.5-C |
TATA |
||
|
PLPR0516: Gmhsp17.9-D |
TATA |
||
|
PLPR0559: Gmhsp26-A |
TATA |
||
|
PLPR0560: N-20 |
TATA |
||
|
PLPR0563: N-22 |
TATA |
||
Gossypium
hirsutum |
PLPR0049: MT1A |
TATA |
||
|
PLPR0172: Chi2;1 |
TATA |
||
|
PLPR0538: Mat5-A |
TATA |
||
|
PLPR0539: Lea4-D9 |
TATA |
||
|
PLPR0540: LEA2 |
TATA |
||
|
PLPR0547: LegA |
TATA |
||
Helianthus annuus |
PLPR0052:
SF18 |
TATA |
||
|
PLPR0415:
ds10 |
TATA-less |
||
|
PLPR0450:
GUbB1* |
TATA |
||
|
PLPR0451:
GUbB2* |
TATA |
||
|
PLPR0488:
hsp17.7 G4 |
TATA |
||
|
PLPR0489:
hsp18.6 G2 |
TATA |
||
|
PLPR0492:
hsp17.6 G1 |
TATA |
||
|
PLPR0537:
HaHX3 |
TATA |
||
Hevea
brasiliensis |
PLPR0053: SODMn |
TATA |
||
Ipomoea
batatas |
PLPR0410: gSPO-A1 |
TATA |
||
|
PLPR0411: gSPO-B1 |
TATA |
||
Ipomoea
nil |
PLPR0518: Hsp83 |
TATA |
||
|
PLPR0524: shsp-1 |
TATA-less |
||
Lupinus
luteus |
PLPR0012: Ypr10.1a |
TATA |
||
|
PLPR0058: glutamate-ammonia ligase |
TATA |
||
Lycopersicon
esculentum |
PLPR0056: gast1 |
TATA |
||
|
PLPR0057: tas14 |
TATA |
||
|
PLPR0093: adh3a |
TATA |
||
|
PLPR0104: le25 |
TATA |
||
|
PLPR0117: adh3b |
TATA |
||
|
PLPR0153: HMG2 |
TATA |
||
|
PLPR0181: Asc |
TATA-less |
||
|
PLPR0187: vsf-1 |
TATA-less |
||
|
PLPR0234: SOD Cp;Le:1 |
TATA-less |
||
|
PLPR0235: ubi3 |
TATA-less |
||
|
PLPR0247: DCL |
TATA-less |
||
|
PLPR0293: LE-ACS4 |
TATA |
||
|
PLPR0402: LCA1* |
TATA-less |
||
|
PLPR0402: LCA1* |
TATA-less |
||
|
PLPR0405: tomloxA |
TATA |
||
|
PLPR0406: tomloxB |
TATA |
||
|
PLPR0431: vacuolar invertase |
TATA |
||
|
PLPR0455: Adh2 |
TATA-less |
||
|
PLPR0521: TPSI1 |
TATA |
||
|
PLPR0535: le16 |
TATA |
||
|
PLPR0548: rnale (=RNaseLE) |
TATA |
||
|
PLPR0574: ACC2 |
TATA-less |
||
|
PLPR0571:
ethylene-responsive fruit ripening gene E8 |
TATA |
|
|
|
PLPR0572: LAT52 |
TATA |
||
|
PLPR0570: proteinase
inhibitor I |
TATA |
||
Lycopersicon
peruvianum |
PLPR0105: proteinase
inhibitor I |
TATA |
|
|
Lycopersicon
pimpinellifolium |
PLPR0430: vacuolar invertase |
TATA |
||
Lycopersicon
penellii |
PLPR0446: His1 |
TATA |
||
Linum usitatissimum |
PLPR0388: PLR |
TATA |
||
Lotus
japonicus |
PLPR0368: gln1* |
TATA |
||
|
PLPR0368: gln1* |
TATA |
||
Madagascar
periwinkle |
PLPR0176: tdc |
TATA |
||
Malus
domestica |
PLPR0118: Ypr10 |
TATA |
[17] |
|
|
PLPR0364: ACC oxidase |
TATA |
||
|
PLPR0365: polygalacturonase (MdPG) |
TATA |
||
Medicago
sativa |
PLPR0236: PO22 |
TATA-less |
||
|
PLPR0298: IFR |
TATA |
||
|
PLPR0452: Nms-25 |
TATA |
||
Medicago
truncatula |
PLPR0299: rip1 |
TATA |
||
Nicotiana
benthamiana |
PLPR0131: PCNA |
TATA |
8972593 |
|
Nicotiana
plumbaginifolia |
PLPR0101: beta-1,3-glucanase
regulador |
TATA |
|
|
|
PLPR0103: pma3 |
TATA |
||
|
PLPR0175: Cab-E |
TATA |
||
|
PLPR0273: atp2-1 |
TATA-less |
||
|
PLPR0310: ABC1* |
TATA |
||
|
PLPR0310: ABC1* |
TATA-less |
||
Nicotiana
sylvestris |
PLPR0286: Lhcb1*9 |
TATA |
||
|
PLPR0287: Lhcb1*8 |
TATA |
||
|
PLPR0288: Lhcb1*3 |
TATA |
||
|
PLPR0329: psaDb |
TATA-less |
||
|
PLPR0497: Lhcb1*2 |
TATA |
||
|
PLPR0499: Lhcb1*4 |
TATA |
||
|
PLPR0500: Lhcb1*5 |
TATA |
||
|
PLPR0501: Lhcb1*6 |
TATA |
||
|
PLPR0502:
Lhcb1*7 |
TATA-less |
||
Nicotiana
tabacum |
PLPR0060: CHN50 |
TATA |
||
|
PLPR0061: NTM19 |
TATA |
||
|
PLPR0062: Sp41a |
TATA |
||
|
PLPR0063: rbcmtT |
TATA |
||
|
PLPR0091: TobRB7 |
TATA |
||
|
PLPR0100: extensin |
TATA |
||
|
PLPR0102: glucanase GLA |
TATA |
||
|
PLPR0114: GNT1 |
TATA |
||
|
PLPR0115: GNT35 |
TATA |
||
|
PLPR0207: zgt |
TATA-less |
||
|
PLPR0238: eIF-4a |
TATA-less |
||
|
PLPR0251: ASF-1/G13 |
TATA-less |
||
|
PLPR0270: par |
TATA-less |
||
|
PLPR0282: tbzF |
TATA-less |
[12] |
|
|
PLPR0283: Sar8.2b |
TATA |
||
|
PLPR0300: EAS |
TATA |
||
|
PLPR0309: COMT II |
TATA |
12956522 |
|
|
PLPR0333: PR-2d |
TATA |
||
|
PLPR0418: Nt59 |
TATA-less |
||
|
PLPR0434: gln2 |
TATA |
||
|
PLPR0435: prb-1b |
TATA |
||
|
PLPR0438: nia-1 |
TATA |
||
|
PLPR0439: nia-2 |
TATA |
||
|
PLPR0460: E2 |
TATA-less |
||
|
PLPR0461: E22 |
TATA-less |
||
|
PLPR0482: Npg1 |
TATA |
||
|
PLPR0493: PR-1a |
TATA |
||
|
PLPR0545:
squalene synthase |
TATA-less |
||
|
PLPR0565: NtPMT1a |
TATA-less |
||
|
PLPR0347: ltp1 |
TATA |
||
|
PLPR0372: chn134 |
TATA |
||
Nicotiana
glutinosa |
PLPR0556: ngr1 |
TATA |
||
|
PLPR0557: ngr3 |
TATA |
||
Papaver
somniferum |
PLPR0412: tydc7 |
TATA |
||
|
PLPR0413: bbe1 |
TATA |
||
|
PLPR0459: gMLP15 |
TATA |
||
Petroselinum
crispum |
PLPR0020: ACO |
TATA |
||
|
PLPR0074: PR2 |
TATA |
||
|
PLPR0075: CPRF1 |
TATA-less |
||
Petroselinum
crispum |
PLPR0353: Pc4CL1 |
TATA-less |
||
|
PLPR0354: Pc4CL2 |
TATA-less |
||
|
PLPR0376: ELI7.1 |
TATA-less |
[7] |
|
|
PLPR0377: ELI7.2 |
TATA-less |
||
|
PLPR0568: CCoAOMT |
TATA |
||
Petunia
integrifolia |
PLPR0077: S1 protein |
TATA |
||
Petunia
hybrida |
PLPR0078: S1 |
TATA |
||
|
PLPR0079: Adh2 |
TATA |
||
|
PLPR0089: An11 |
TATA-less |
||
|
PLPR0132: rbcS (ssu8) |
TATA |
||
|
PLPR0133: rbcS (ssu11A) |
TATA |
||
|
PLPR0463: flavonol
3-O-galactosyltransferase |
TATA |
||
|
PLPR0506: LRR protein |
TATA-less |
||
|
PLPR0496: ACO1 |
TATA |
||
Pharbitis nil |
PLPR0518:Hsp83 |
TATA |
||
Phaseolus
coccineus |
PLPR0021: G564 |
TATA |
||
Phaseolus
vulgaris |
PLPR0010: ME1 |
TATA |
||
|
PLPR0080: gln-gamma* |
TATA |
||
|
PLPR0080: gln-gamma* |
TATA |
||
|
PLPR0088: cellulase |
TATA |
||
|
PLPR0140: dlec1* |
TATA |
||
|
PLPR0140: dlec1* |
TATA |
||
|
PLPR0141: dlec2 |
TATA |
||
|
PLPR0383: Ypr10 |
TATA |
||
|
PLPR0427: gln-delta* |
TATA-less |
||
|
PLPR0427: gln-delta* |
TATA-less |
||
|
PLPR0445: pEP-C1a |
TATA |
||
|
PLPR0477: LEA-18 |
TATA-less |
||
Pisum
sativum |
PLPR0009: gr* |
TATA-less |
||
|
PLPR0009:
gr* |
TATA-less |
||
|
PLPR0019: CYP82A1v2 |
TATA |
||
|
PLPR0076: EGL1 |
TATA |
||
|
PLPR0084: Cab II |
TATA-less |
||
|
PLPR0085: gdcT |
TATA-less |
||
|
PLPR0086: lpcr |
TATA |
||
|
PLPR0087: GS3A |
TATA |
||
|
PLPR0111: rpL9 |
TATA |
[16] |
|
|
PLPR0138: rbcS-3C |
TATA |
||
|
PLPR0144: legB |
TATA |
||
|
PLPR0174:
PsNOD6 |
TATA-less |
||
|
PLPR0240:
CL22 |
TATA-less |
||
|
PLPR0255:
legA |
TATA |
||
|
PLPR0256:
Fed-1 |
TATA-less |
||
|
PLPR0266:
33RNP |
TATA-less |
||
|
PLPR0272:
rbcS-3A |
TATA |
||
|
PLPR0357:
rcpme1* |
TATA |
||
|
PLPR0561:
rcpme1* |
TATA |
||
|
PLPR0370:
plc |
TATA-less |
||
|
PLPR0417:
PsTopII |
TATA-less |
||
|
PLPR0424:
SBP65 |
TATA-less |
||
|
PLPR0019:
P4 |
TATA |
||
|
PLPR0426:
S2 |
TATA |
||
|
PLPR0511:
CYP73A9 |
TATA |
||
|
PLPR0019:
CYP82A1 |
TATA |
AF175278.1 |
|
|
PLPR0525:
PRA2 |
TATA-less |
||
|
PLPR0138:
rbcS |
TATA |
||
|
PLPR0338:
LHC AB80 |
TATA |
||
|
PLPR0339:
cvcA |
TATA |
||
|
PLPR0352:
legJ |
TATA |
||
Populus balsamifera subsp. trichocarpa |
PLPR0196:
PTD |
TATA-less |
||
Populus kitakamiensis |
PLPR0378:
prxA3a |
TATA-less |
||
|
PLPR0379:
prxA4a |
TATA-less |
||
Psophocarpus tetragonolobus |
PLPR0278:
major Kunitz chymotrypsin inhibitor A |
TATA |
||
Prunus
persica |
PLPR0363: ACO1 |
TATA |
||
Pyrus
serotina |
PLPR0564: S4-RNase |
TATA |
||
Ricinus
communis |
PLPR0135: ricin |
TATA-less |
||
|
PLPR0476: calreticulin |
TATA |
||
Sinapis
alba |
PLPR0154: CHS1 |
TATA |
||
Solanum
commersonii |
PLPR0095: OSML13 |
TATA |
||
|
PLPR0246: OLP |
TATA-less |
||
Solanum
melongena |
PLPR0421: SmCP* |
TATA |
||
|
PLPR0421: SmCP* |
TATA |
||
Solanum
tuberosum |
PLPR0011: PAL-1 |
TATA |
||
|
PLPR0016:
St4CL |
TATA |
||
|
PLPR0018:
ChtC2 |
TATA |
||
|
PLPR0081:
ADP-glucose pyrophosphorylase small subunit |
TATA |
||
|
PLPR0082:
multicystatin |
TATA |
||
|
PLPR0083:
St4C1-1 |
TATA |
||
|
PLPR0142:
Proteinase inhibitor II |
TATA |
||
|
PLPR0143:
B33/patatin |
TATA-less |
||
|
PLPR0248:
waxy |
TATA |
||
|
PLPR0249:
mcpi |
TATA-less |
||
|
PLPR0296: ci21A |
TATA-less |
9046587 |
|
|
PLPR0472: phyB* |
TATA |
||
|
PLPR0472: phyB* |
TATA-less |
||
|
PLPR0528: UGPase |
TATA-less |
||
Spinacia
oleracea |
PLPR0120: rps1 |
TATA-less |
||
|
PLPR0258: APX2 |
TATA-less |
||
|
PLPR0277: nir |
TATA-less |
||
|
PLPR0280: GT3 |
TATA-less |
||
|
PLPR0280: GT3 |
TATA-less |
||
|
PLPR0334: psaF |
TATA-less |
||
|
PLPR0120: rps1 |
TATA-less |
||
Sesbania
rostrata |
PLPR0356: Enod2 |
TATA |
||
Sesamum
indicum |
PLPR0268: microsomal oleic
acid desaturase gen |
TATA |
||
Striga
hermonthica |
PLPR0374: ShAS |
TATA-less |
[8] |
|
Vicia
faba |
PLPR0106: USP |
TATA |
||
|
PLPR0134: LeB4 |
TATA |
||
|
PLPR0290: VfENOD5 |
TATA-less |
||
Vigna
radiata |
PLPR0017: ACS7 |
TATA |
||
Other organisms: 10 species, 23 genes, 23
promoters |
||||
Chlamydomonas reinhardtii |
PLPR0005: gpxh |
TATA |
[9] |
|
|
PLPR0041: hsp70 |
TATA |
||
|
PLPR0224: Csbp |
TATA-less |
||
|
PLPR0225: RSP4 |
TATA-less |
||
|
PLPR0226: RSP6 |
TATA-less |
||
|
PLPR0227: hsp70b |
TATA-less |
||
|
PLPR0229: CRY1 |
TATA-less |
||
|
PLPR0373: AOX1 |
TATA-less |
||
|
PLPR0382: hyd1 |
TATA-less |
||
|
PLPR0387: NIT1 |
TATA-less |
||
Chlorella vulgaris |
PLPR0231: nitrate reductase |
TATA-less |
||
Chlorococcum littorale |
PLPR0223: rca |
TATA-less |
||
Dunaliella tertiolecta |
PLPR0390: rbcS1 |
TATA-less |
||
|
PLPR0391: rbcS2 |
TATA-less |
||
Pinus thunbergii |
PLPR0566: LHC cab-6 |
TATA |
||
Pinus sylvestris |
PLPR0315: GS1b |
TATA |
||
|
PLPR0362: gln1a |
TATA-less |
||
Pseudotsuga menziesii |
PLPR0320: gPmMTa |
TATA |
||
Pyrenomonas salina |
PLPR0241: histone H4 |
TATA-less |
||
Scenedesmus obliquus |
PLPR0096: hydA |
TATA-less |
||
|
PLPR0097: ENR |
TATA-less |
||
Volvox carteri |
PLPR0291: alpha2tub |
TATA-less |
||
|
PLPR0292: beta2tub |
TATA-less |
References
[1] Krebbers E, Seurinck J, Herdies L, Cashmore AR, Timko MP (1988) Four genes in two diverged subfamilies encode
the ribulose-l,5-bisphosphate carboxylase small subunit polypeptides of Arabidopsis
thaliana. Plan Molecular Biology,
11, 745-759
[2] Strater T, Hachtel W (2000) Identification of light- and nitrate-responsive regions of the nitrate reductase promoter from birch. Plant Sci. 150, 153-161
[3] Marks MD, West J, Weeks DP (1987) The relatively large beta-tubulin gene family of Arabidopsis contains a member with an unusual transcribed 5' noncoding sequence. Plant Mol. Biol., 10, 91-104
[4] Yenofsky RL, Fine M, Liu C (1988) Isolation and characterization of a soybean (Glycine max) lipoxygenase-3 gene. Mol. Gen. Genet., 211, 215-222
[5] van Kan JAL, Van de Rhee MD, Zuidema D, Cornelissen BJC. Bol JF (1989) Structure of tobacco genes encoding thaumatin-like proteins. Plant Mol. Biol., 12, 153-155
[6] Payne G, Parks TD, Burkhart W, Dincher S, Ahl P, Metraux JP, Ryals J (1988) Isolation of the genomic clone for pathogenesis-related protein 1a from Nicotiana tabacum cv. Xanthi-nc. Plant Mol. Biol., 11, 89-94
[7] Kirsch C, Takamiya-Wik M, Schmelzer E, Hahlbrock K, Somssich IE (2000) A novel regulatory element involved in rapid activation of parsley ELI7 gene family members by fungal elicitor or pathogen infection. Mol. Plant Pathol., 1, 243-251
[8] Simier P, Delavault P, Demarsy E, Pouvreau JB, Pageau K, Le Bizec B, Fer A, Thalouarn P (2005) Characterization of an unusually regulated gene encoding asparagine synthetase in the parasitic plant Striga hermonthica (Scrophulariaceae). Physiol. Plantarum, 123, 9-20
[9] Leisinger U, Ruefenacht K, Zehnder AJB, Eggen RIL (1999) Structure of a glutathione peroxidase homologous gene involved in the oxidative stress response in Chlamydomonas reinhardtii. Plant Sci.,149, 139-149
[10] Kathiresan A, Khush GS, Bennett J (2002 Two rice DMC1 genes are differentially expressed during meiosis and during haploid and diploid mitosis. Sex Plant Reprod, 14, 257-267
[11] Dong H, Dong J, He Z, Li D (1999) A Rice Transposon Protein-like cDNA Is Induced by Magnaporthe grisea. Plant Physiol., 119, 1149
[12] Yang SH,
Yamaguchi Y, Koizumi N, Kusano T, Sano H (2002) Promoter analysis of tbzF, a
gene encoding a bZIP-type transcription factor, reveals distinct variation in
cis-regions responsible for transcriptional activation between senescing leaves
and flower buds in tobacco plants. Plant Sci., 162, 973-980
[13] Hermann SR, Harding RM, Dale JL (2001) The banana actin 1 promoter drives near-constitutive
transgene expression in vegetative tissues of banana ( Musaspp.). Plant Cell
Rep, 20, 525-530
[14] Tobias CM, Chow EK (2005) Structure of the cinnamyl-alcohol
dehydrogenase gene family in rice and promoter activity of a member associated
with lignification. Planta, 220, 678-688
[15] Liu Z-Z, Wang J-L, Xun Huang X, Xu W-H, Liu Z-M, Fang R-X (2003)
The promoter of a rice glycine-rich protein gene, Osgrp-2, confers
vascular-specific expression in transgenic plants. Planta, 216,824-833
[16] Moran DL, Cohn NS and Mitchell JP (1996) cDNA and Gene Sequences of a Pea homologue of Eukaryotic ribosomal protein L9. Plant Physiol., 112, 863-863
[17] Puhringer H., Moll D., Hoffmann-Sommergruber
K., Watillon B., Katinger H. and da Camara Machado M.L. (2000) The
promoter of an apple Ypr10 gene, encoding the major allergen Mal d 1, is
stress- and pathogen-inducible. Plant Science, 152, 35-50
*Alternative Promoters