GenomeSequence Explorer

GenomeSequence Explorer

Theoretical and Applied Genetics
February 2013, DOI: 10.1007/s00122-013-2052-6

Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1

Ning et al.,
1. Plant Genome Research Unit, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan 2. Graduate school of Horticulture, Chiba University, 648 Matsudo, Matsudo, Chiba, 271-8510, Japan

... cgi). Softberry Bacterial Genome Explorer ( phtml) software was then used to allow the simultaneous comparison of distinct annotated genomes. Phylogenetic analysis. Protein sequence ...

425, 209-215 (11 September 2003) | doi:10.1038/425209a

Bioinformatics: Programmed for success

Steve Buckingham

... Three-way synteny from Softberry. Fast searching is also a feature of Genome Explorer from Softberry in Mount Kisco, New York, which uses the FMAP algorithm. ...


European Journal of Human Genetics
12 Nov 2008, doi: 10.1038/ejhg.2008.21

Noncanonical and canonical splice sites: a novel mutation at the rare noncanonical splice-donor cut site (IVS4+1A>G) of SEDL causes variable splicing isoforms in X-linked spondyloepiphyseal dysplasia tarda

Feng Xiong et al.,
1 Children's Hospital of Chongqing Medical University, Central District, Chongqing, PR China 2 Bio-X Center, Shanghai Jiao Tong University, Shanghai, China

... 9 Exons 3, 4, 5 and 6 (containing the ... canonical and noncanonical mammalian splice sites (SpliceDB) was used ... and SPL platforms ( were ...

Volume 12, Number 6, 2005 Pp. 894-906

Finding short DNA motifs using permuted markov models

X Zhao, H Huang, TP Speed

... The data are human donor sequences from SpliceDB[9], a recently developed database of known mammalian splice site sequences ( ...

Current Opinion in Structural Biology
2004, 14:273-282

The evolving roles of alternative splicing

Liana F Lareau1, Richard E Green1, Rajiv S Bhatnagar2,3 and Steven E Brenner1,2_
Departments of 1Molecular and Cell Biology, and 2Plant and Microbial Biology, University of California, Berkeley, California 94720, USA 3Department of Dermatology, University of California, San Francisco, California 94143, USA

... [79] SpliceDB and composition statistics for mammalian splice sites inferred from ESTs [80] ...

Yearbook of Medical Informatics.
Review Paper. 2004 121-136

Curated databases and their role in clinical bioinformatics

CC Englbrecht, M Han, MT Mader, A Osanger KFX Mayer
MIPS, Institute for Bioinformatics

...SpliceDB Canonical and non-canonical mammalian splice sites [122]
122.Burset M, Seledtsov IA, Solovyev VV. SpliceDB: database of canonical and non-canonical mammalian splice sites. Nucleic Acids Res 2001;29:255-9

Nucleic Acids Research,
2001, Vol. 29, No. 1 255-259

SpliceDB: database of canonical and non-canonical mammalian splice sites

M. Burset, I. A. Seledtsov1 and V. V. Solovyev*
The Sanger Centre, Hinxton, Cambridge CB10 1SA, UK and 1Softberry Inc., 108 Corporate Park Drive, Suite 120, White Plains, NY 10604, USA