Theoretical and Applied Genetics
February 2013, DOI: 10.1007/s00122-013-2052-6
Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1
Ning et al.,
1. Plant Genome Research Unit, National Institute of Agrobiological Sciences (NIAS), 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan 2. Graduate school of Horticulture, Chiba University, 648 Matsudo, Matsudo, Chiba, 271-8510, Japan
... cgi). Softberry Bacterial Genome Explorer (http://www.linux1.softberry.com/berry. phtml) software was then used to allow the simultaneous comparison of distinct annotated genomes. Phylogenetic analysis. Protein sequence ...
425, 209-215 (11 September 2003) | doi:10.1038/425209a
Bioinformatics: Programmed for success
... Three-way synteny from Softberry. Fast searching is also a feature of Genome Explorer from Softberry in Mount Kisco, New York, which uses the FMAP algorithm. ...
European Journal of Human Genetics
12 Nov 2008, doi: 10.1038/ejhg.2008.21
Noncanonical and canonical splice sites: a novel mutation at the rare noncanonical splice-donor cut site (IVS4+1A>G) of SEDL causes variable splicing isoforms in X-linked spondyloepiphyseal dysplasia tarda
Feng Xiong et al.,
1 Children's Hospital of Chongqing Medical University, Central District, Chongqing, PR China 2 Bio-X Center, Shanghai Jiao Tong University, Shanghai, China
... 9 Exons 3, 4, 5 and 6 (containing the ... canonical and noncanonical mammalian splice sites (SpliceDB) was used ... and SPL platforms (http://www.softberry.com/) were ...
JOURNAL OF COMPUTATIONAL BIOLOGY
Volume 12, Number 6, 2005 Pp. 894-906
Finding short DNA motifs using permuted markov models
X Zhao, H Huang, TP Speed
... The data are human donor sequences from SpliceDB, a recently developed database of known mammalian splice site sequences (http://www.softberry.com/spldb ...
Current Opinion in Structural Biology
The evolving roles of alternative splicing
Liana F Lareau1, Richard E Green1, Rajiv S Bhatnagar2,3 and Steven E Brenner1,2_
Departments of 1Molecular and Cell Biology, and 2Plant and Microbial Biology, University of California, Berkeley, California 94720, USA 3Department of Dermatology, University of California, San Francisco, California 94143, USA
...  SpliceDBhttp://www.softberry.com/berry.phtml?topic?SpliceDBDatabase and composition statistics for mammalian splice sites inferred from ESTs  ...
Yearbook of Medical Informatics.
Review Paper. 2004 121-136
Curated databases and their role in clinical bioinformatics
CC Englbrecht, M Han, MT Mader, A Osanger KFX Mayer
MIPS, Institute for Bioinformatics
...SpliceDB http://www.softberry.com/spldb/SpliceDB.html Canonical and non-canonical mammalian splice sites 
122.Burset M, Seledtsov IA, Solovyev VV. SpliceDB: database of canonical and non-canonical mammalian splice sites. Nucleic Acids Res 2001;29:255-9
Nucleic Acids Research,
2001, Vol. 29, No. 1 255-259
SpliceDB: database of canonical and non-canonical mammalian splice sites
M. Burset, I. A. Seledtsov1 and V. V. Solovyev*
The Sanger Centre, Hinxton, Cambridge CB10 1SA, UK and 1Softberry Inc., 108 Corporate Park Drive, Suite 120, White Plains, NY 10604, USA