GenomeMatch - build synteny alignments of 2 genomes You can view the alignment data in Synteny Viewer
Paste first genome in here >scaff_1195 Tccgtccttcctcggggagtggcaacatcgctgcttccgtgaatatggacgtgctggtca cctgggggaaacaccttgcttccttcacactcctgtcgcagagtaccgtacgattctact ccctgatcgcctcgtagcacgattactcgtagtatggggtcactctgctcttagtctgat tcctcccctttggccttcctaacatggttataccttatggaacggagttccactcaGTGA AGTATCGTGAACGGCTTTGTGCGTATATTTCCTAGTCTGACACATATGGAATCAAGACTC ...Alternatively, load a local file: Local file name:
Paste second genome in here >opera_v5_2 1-5728931 TGATGCTGATGATGATCAAGATTTCGCATATACTCCTCCTAGATCCAGTTGTAGGTGCGG GAAGAAATCGGTTTGTTCCTCAAAGTGACCTTCGCAACAGACACGGACTATCTGACTTGG CTCGGAAAATTAATCAGCACGTACATCTTCATATGAGAGCATACAATCACAGCAGAATGC CAGGTAACTTTGGGTCTAAATTAAAGGGAAAGGTCATCCGTCAGACACTCGGTTCCTAAG AGATGCCAGGGACAAAAGGACAAGTATCCGTTCAGAAGTGGCACCCCAATAACTGTAAAG ...Alternatively, load a local file: Local file name:
Format of alignment: GenomMatch Coords
[Help] [Program's page][Example1: Opisthorchis felineus vs Clonorchis sinensis (Top 10 homologous contigs, Coords format)]
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Last modification date: 1 Nov 2016