PATTERN / pattern search
Paste sequence here: >Example seq >SET2_11_1: -1000:+100 (TSS) |STAT5: -118:-102| gi|184396|gb|M77144.1|HUMHSD3BA Human type II 3-beta hydroxysteroid dehydrogenase/ 5-delta - 4-delta isomerase gene gggggagggcaggcaattgactaagaacaggcagataaaactttctggag tgaaggaaatggtggtcttcttttcgttggtacttacatggacatatata actgtcaaggttcattgacaatgaacacttaagtgtacactgaacgctta agatctgggccttgtaatgcccagattacatctacttaaaaaaactacat ctctatttttttaagtagagaaaagtgtcttggggagtttatggcagtga tgtttgggcagactggggcataggtttcagaagcattcatagcatcttca gttcaacaatttgctaagaatggttttgcagccaaaaatgtaagatgagt gcaaatatctatgattagagtcattgggcatacaactacaaatccccaca cttgtattacaggccatatgattaattcgttatcactagatacctttcct tcaatgaggttcttccattaggaacccagagctctccagggaaaaattgc aattgaggttttggatatattgggtggaaaagaaagtcacctcacataaa acttagtgattggagctgtcaccattgaaaatttctaaactttgcaagac agcagtgacgtttcaaatgacactctcagagagttgataatgggctaaaa tagatctccctccaggtggatttactgtacaaggacaacatttacattgc acttggagacttctcccagtttggtttaagttcacagattgcagatccca gacagctggtatcaactgaccagtgttctgttaaggctaaagccaagact ctttatcacactgtggccttaagattggatttctcttcctgttcctggga agaattagagatataacctaaaggtcactattattctgagaaaagggatt ctggaggaggagggagcaatgagtatgtggcaggagttcaaggtaataag ggctgagacacaagccacagagcataaagctccagtccttcctccaggga tgaggcagtaaggacttggactcctctgtccagcttttaacaatctaagt tacggttagagctttctccttttctttcaactactcctggcagttgtggg g >SET2_11_2: -800:+3 (ATG; Multiple TSSs from -151 to -14) |STAT5: -643:-635| acid labile subunit (ALS) of the insulin-like growth factor binding complex, mouse ctttgcacacaaggtagtaggttgttaggccctccatactgtggaggccagcagaaactg gctctgcccctgaggctgcggtgcccccatgtcttcctgccaacccttttctaggaggac tgtgctggggagagcaaacacgaggtagctggtggctctgccaggtgttcctagaagagg ccctgggggaggggcggtagccagccgtcagctgacctagaggtcacaggaagactgaga ctgggccttagacaaacccctggactgggaggcacaaatggtgggcccacttaggcctaa gaaaccccaggtcagagagcattcgagaagtataggcaaggccttaggaaacagggcaaa ctgtttaagcctgacagagtcatctgctccgtatagaggtgagtgggggggttcccagga acccccgagctccctcaccttagctgaatctactgggagacagggccccctacacctacc ttgagcaccaatcccgaaggcctactccaccaagcctctacctccaacaccagcagaggt ggctttcaattgctcccccgcccctcaatccccgagactttggggcggacaaagtgcccc tcccctgcaccacccgcatcgagaggagcttctgttgagacttgttgcccagccctagag ggttaaaggagccagagtgtggggcagggccagctgagggctgccagctacaggcagtgg ggaaatccactgggcagcagcctgtgctgtagacggcccttgctcactgcctgcctgcgg ccagctctgtacaaggaacaatg >SET2_11_3: -783:+100 (TSS) |STAT5: -97:-89| gi|203314|gb|AH002146.1|SEG_RATCASB Rat beta-casein gene caaaaaaaaaaagagagagagagagagagagagagagagagagagagagagagagagaga gaaagagagagagagagaaaatgtacacaaaaagagaacgagagagacacacacagagag aaaataccttttttggtgtttgtaaacctctgagaccttattatttaagccaagaatttg atttattctaaacccgttttacaaacttttctctttttacaaattcatagttttatcttt tatacaaaccttaaagattccttttctcacttgttctaatactatgtaaaacgcagtccc ctgtgtactgaatattagttgaatgtatttaaattttcccaaatcttggtgaatgtgagc aatcaaaaagtatgctacttcatgaccagtctatcttagcattatggagttcttagtgct caggtggagatgaaatcttggcctctctaaagcttgtgaattttgatgtctctatatcat tgccacataggtgaggttaaagccccccactaggctggggagagtgctgaggactgtgta ctaggctggagagacatttcagttattggacaatttcctttcctgacaagttccttcacc agcttctgaattgctgccttgtttaatgtcccccagaatttcttgggaaagaaaatagaa agaaaccattttctaatcatgtgaacttcttggaattaaggaacttttgaatatcttacg aaccacaaattagcatgtcattaagtatggtatatatacagtcacagagtctgatagacc atcatcctctgagcttcatcttctctcttgtcctccgctaaaggtaagaacttcagacgt aagtttgaaatactattttcattatttatttcaaacccatact >SET2_11_4: -665:+3 (ATG) |STAT5: -253:-245| human cytokine-inducible SH2-containing protein (CIS) gene aggagccgctcgcagggaggacaagcccgggactccgccccccgccctgccacgagttcc accgcgagataagagggcccttccccaacgacgcagaatgccagaaggcaatctgggcgc gggttgctgagcccgggcccctccttaacttccccgacccggtctttccccactgatctc tccgacctgcccctctgggtagcttcagccccgggtccacgcgctgctattggccctccc cgaccgcacggctccaccttcagcgtcgcgattggtcagctcgcggggccccgccccgtt ttcctggaaacttcttggaaatctgtcaaagtatttcctttcactgctcagggccccaga cccggcgacggggcccccgcaccccgcccgggccccaccgctcagcccgcggttctagga agacgctgcttccgggaagggctggaacgcggcagacaaaggattaggcagcagctcccc ccgccccgctcgtctggcccgcccccctcgccctcgccggcggtccgcgccactgcctct cagtccctgtcctgcgcccgcgcgccccgggagcctacccagcacgcgctccgcgcccac tggttccctccagccgccgccgtccagccgagtccccactccggagtcgccgctgccgcg gggacatg >SET2_11_5: -1000:+100 (TSS) |STAT5: -640:-632| gi|483600|emb|Z29078.1|HSCYCLI H.sapiens cyclin D1 gene ctacacccccaacaaaaccaattaggaacttcggtggtcttgtcccaggcagaggggact aatatttccagcaatttaatttcttttttaattaaaaaaaatgagtcagaatggagatca ctgtttctcagctttccattcagaggtgtgtttctcccggttaaattgccggcacgggaa gggagggggtgcagttggggacccccgcaaggaccgactggtcaaggtaggaaggcagcc cgaagagtctccaggctagaaggacaagatgaaggaaatgctggccaccatcttgggctg ctgctggaattttcgggcatttattttattttattttttgagcgagcgcatgctaagctg aaatccctttaacttttagggttacccccttgggcatttgcaacgacgcccctgtgcgcc ggaatgaaacttgcacaggggttgtgtgcccggtcctccccgtccttgcatgctaaatta gttcttgcaatttacacgtgttaatgaaaatgaaagaagatgcagtcgctgagattcttt ggccgtctgtccgcccgtgggtgccctcgtggcgttcttggaaatgcgcccattctgccg gcttggatatggggtgtcgccgcgccccagtcaccccttctcgtggtctccccaggctgc gtgctgtgccggccttcctagttgtcccctactgcagagccacctccacctcacccccta aatcccgggggacccactcgaggcggacggggccccctgcacccctcttccctggcgggg agaaaggctgcagcggggcgatttgcatttctatgaaaaccggactacaggggcaactcc gccgcagggcaggcgcggcgcctcagggatggcttttgggctctgcccctcgctgctccc ggcgtttggcgcccgcgccccctccccctgcgcccgcccccgcccccctcccgctcccat tctctgccgggctttgatctttgcttaacaacagtaacgtcacacggactacaggggagt tttgttgaagttgcaaagtcctggagcctccagagggctgtcggcgcagtagcagcgagc agcagagtccgcacgctccg >SET2_11_6: -822:+100 (TSS) |STAT5: -91:-83| gi|1110567|gb|S79317.1|S79317 CYP3A10=CYP3A10/6 beta-hydroxylase, hamsters aagcttatctccacagtctggcggtttcatgtgtcggcactgtggaccagatgttctttt cgatctgaccttgttccctgcctaggggaccttggggaattttccactggggcgatcttc tgagtctccaggggggtgtattgaggtctttcaggggaaagagtgtaagagctggaggat gggagggagtgctgtgaaatgccacaaagagaaaaataccgttagagtatggagaaaaac aattgagttttgtgccaaggaacaaagtagtgcagagtgggaagtgatttttagatgtgg gtttcacatcttccagagcacacagaggccttaaaggaagagagccttgctggacgttgg tggcgcacacctttaatcccagcactcgggaggcagaggcaggcggatctctgtgagttc aagaccagcctggactaccgagcgagttccaggacagagtccaaaacaatacagagaaac cctgtctcaaaaaaacaaaaatcaaaggaagagggccttgcatagacaaagattagtagc tatagttttgttgtatggacttaatgtttttggaaagagaacagccacggacacaactgc aaataagaagaaagtagttccaatcaatatgagtttctgaaagaacaaatataggcagaa tgtaagctcaaagttcagattaggtgaattcatgaaccttttggcattttaaccaatacc agttacccaagttcctggaagcgtgcaagaggcccttctactggctgcagccctgacacc tccttctttcccagcacataaactctgcagtctggactcactgggtctcagctgagcaca gcaggggagccctgcaagactctcagttgggagggaaacttggagccagacctgctgaag gctgaagaaaagctgcaatgg >SET2_11_7: -752:+100 (TSS) |STAT5: -116:-108| gi|4494071|emb|Y16640.1|RNY16640 Rattus norvegicus HNF-6 gene cagggtatactcgtcccaagtccctgtaggacaatcatttaagtacagggaacggactgg cctccagagactctccagggaataaagcccaatgggcgaacgggcaaaggccatggcata gtctccagctcccagccgataacctgcaccgggaaccagcaactccgacccaggggctct agttctctaaccttgctggcccacggtgacagaaagcaggcaagagagtcgggctgggaa gagagagggaggaagtaaggaagaccaggaggtagcaaatctccgaggactgtggcggct ccaggtcgcgctctgcgcgcgtcccgtgcacgtgctcaccgatcccgggccattcggcgc cgctgagaaagctctactcggcccccccacccccccttagttcatttgtgcatggacgtc acggagctctgggactgagggggcggggcctggcagcgcgcatgcgcgctgcgcccggcg ggcgtgagggtgggcagcggcagcggcagcggctaccgaatctcagccacagtctgcaac agtaaccgagccatggctcgagctggcgggcggcacaggcagacagcagccgcggcaggc acacgggccgcgtcaagggagccgggggcagcaggattctaagaaagagaggggcgagag ggggccgggctgggcgggctaggggcaccgcgctctcccaacagcacggatcctttttgg aaattaatattaaaaaagaaaaaaaagaaaagaaaaggcagaggggaaggtaggagcaag agagaaggcaagacacacacagagagagcgaaagacacagatccccacagtgagaggaag aaaggccacagt >SET2_11_8: -463:+100 (ATG) |STAT5: -157:-149| gi|38091284|ref|XM_137493.2| Mus musculus oncostatin M (Osm) tcaacaaggaagatgtctggctccctttagccctaaaccttcgtgtcctaggaggttggt agtttctggaccaggggtggcctcccttgcaagtcgtgctctgacccctggactgatccc tgaagatgatacggacccccgtgctgcccgctcaccccaagaaggctgaggctgcggttt acatcatccttgggcgtggggctgacctcgaagaacgaattcgaagaaaacgggaggagg agcgggcatgtcatggcgcatggcgcccattggccgcctggggagactttggtttttggg gtcatgttcccagaaggcctgcccttccccctccccctccccacccacctcacgagatgt tggccaatcgccccgtcgggcataaagtggctgccagcctgcaggacacccagccaagct gtgtcacccctgagaggcacgggccagagtaccaggacccagtatgcagacacggcttct aagaacactgctcagtttgaccctcagtctcctcatcctgagcatggcactggccaatcg tggctgctccaactcttcctctc >SET2_11_9: -835:+58 (TSS) |STAT5: -191:-183| gi|4877794|gb|AF129855.1|AF129855 Homo sapiens oncostatin M gene gtccatgctggcagcaaccctgtgaggtgggctgggaaaggcttttctcctcctcatttt atagttgtgggtctctgaggcccagagaggttaagtgacttgcctcaggtcacacagcac ctcagcaggcttgaaccctggcctcctgtttctcttgctccaagtgtccagttctcccca gtggagcctgcctacaaagacaaggcctggctttggggagtgggcctggcagagggtgca cgatgggggaaaggagaccgtcgggagccgggctgggggatgctggtcctggggcctgaa ccacaatctcggggctgccagcctgcgtctggctctgtgcccagagcccggtggtttccg ctcacagatgtcccaacagccccggcgagagggcaggaagggcactcaagaaggaagatg tctcgctcccctcagcccccaaccaccgtgtcctgtgaggccaatggctcctgggccaag actggcctggggcctccagaggcccagctcgaagtccctcctgcccatccctggcccagt tccctgaagatggcatggacccttttcctccccactcaccctaggaaggctgaggctgcg gttttacatcatccttgggcgtagggctgacctcgaagaacgaattcgaagaaaacagga ggaggagcgggcatacaccgcgccctgcgcccattggccgcccgtggaaattttggtttt tggggtcatgttcccagaaggcctgccctcccccctccccatccccacccacctcatgag gtgttggccaatcgccccagcgggcataaagtggctgccagcctgcagggctcccagccg agaggtgtcacccccagcgggcgcgggccggagcacgggcacccagcatgggg >SET2_11_10: -999:+100 (TSS) |STAT5: -159:-151| gi|1223856|gb|U34728.1|RNU34728 Rattus norvegicus prolactin receptor gene (exon 1a) ctccagtaaagctacctggccctgggcttttttttttttttggagatttttaatgacttc ttctatttctttagagactatgggcctgtttagatagtttacttgctcttgatttaactt cggtacatggtatctgtctagaaagtcatccatttcatctagattttccaattttgttgc gtataggctttcattcttactaaactggttgaggttgttttgtgaccaattatatgatca attttggagaaggtactatgaggtgctgagaagaaggtatgttcttttatttttggtgaa atgtttggtatatatctactaagtccatttggttcataaccactattagtttcactgtct ctgtttagtttctgttttaatgacttgttcattattagtgagagtgtggtgttgaagtct cccactattactgtgtaggtttaatgtgttttgagctttagtaaagtttcttttatgaat gtgggtgccaggataggagagtacattgagatacaactgattttcagttgtcactgaaag cttgtagtttgggtcagctgggtcagagcctgtgaaatgaaggcactatgtcctcctgaa gcaccccccaaaaaatcaatcattcaacatttgagccttctccatatgggccaagctagg accaccatactaaggcttagaatgtcactgtaatgtgtcctggataggaacacaggcctc ctaggggagtagctgacgtgaatcaaagtgtttactcaccgcagattgctttgtaaaaat aaataagggatgttgattttttgtgcagatggttaaacaaatctggtgggccaaaatgag ttctaggaataaagaatatcagagggcaaagctgctgaagacagcaagagctgcacctgg acaacgttgtggcatagtccctggcaggtgtgtgtgagactctttcaggggactactgtg ccaggagaataagaacacttgcctggcaaagagggaagctgactcaagggggcaaagtca agcgagctggattctagggaaacatagaagagtaatcatccagagaggggctctggtgga gctcactagccattgactg >SET2_11_11: -1013:+1 (CAP site) |STAT5: -131:-123| gi|57297|emb|X16361.1|RNSPI2G Rat SPI-2 serine protease inhibitor gene ggagcctaggcctgccaacaggccaaaagaggatcgaggagaattggggacctcgtagtt atagacactagaaaaagactcagcagagcatgggagccagcagaccttgaactgcagaca ttgaaaactgtgattcaagcaaaaccttgcttcgctcagtggatcctctcaaatcattca gtttgattccattgatcaacatgcctgtcttcatgccaacgccatggaggtttattacta ttgctttgttgcaagcttgaattcagggatgttagtccttcaagtccttttattgtataa gatttttatacctgtactgggtgggggttatttccatatgaagttgggaattgctctttc aagtcctgtaaagagttgtgttggaattttaaagagattggtttgaatatttagataggc attggtaaggtgaacatttaacttggttaatcctaccaatgcaagtgcaaaggagatctt gccatattctgatatctacctaatttcatagagactggagttcttgtcctgcaggacatt tcctggctaggttgaagttaacccaagatatttcacattatttttgctattgtgaaggat gttgtttcttaatttctttctttgcccatttaatatttatataaaggagggctatttgtt tggtttttctctttgtgttttagttggtttttagtattcattttgaaataatttagacaa tggaggaaaaatgtaaggttacagacatgctgggacacaagtaaggcagaatttgtacac tctacttttgtttttgacttctcccactttccacattgactttgagccactcaataaata aaagatgtgttcaagagatcagtacgcttctactaatccatgttctgagaaatcatcccg tctgcccatctgtaatctgaacacaaagcacagttatccaaggcagtatttcctaagagg agggaggagcccttggtggggataaatagccatcgctgtgcacaagagagcaaa
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Last modification date: 24 Jul 2007