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FSPLICE

FSPLICE - find splice sites in genomic DNA

Paste nucleotide sequence here:

Alternatively, load a local file with sequence in Fasta format:

Local file name:

Select organism specific gene-finding parameters :

Total 539 genome-specific parameters are available for genefinders of FGENESH suite

Search in chain:  Direct
 Reverse
 Both

Search for GC donor site 

Output splice site sequence 
Output splice site sequence length 

Splice site threshold 

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Most gene finding parameters presented here were trained by Softberry for its own use and distribution, using proprietary and publicly available data. Some of the parameters were created for our academic customers, including Broad Institute/MIT, Washington University, University of Minnesota and The Institute for Genomic Research (TIGR).


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Last modification date: 12 Dec 2013