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The programs usage in Scientific publications List of Plant Regsite database factors used in TSSP and Nsite-PL programs FPROM / Human promoter prediction [Help] [Example] PATTERN / pattern search [Help] [Example] TSSP / Prediction of PLANT Promoters (Using RegSite Plant DB, Softberry Inc.) [Help] [Example] TSSPlant / Search for RNA polymerase II promoters (TSSs) in plant DNA sequences [Help] [Example] TSSG / Recognition of human PolII promoter region and start of transcription [Help] [Example] TSSW / Recognition of human PolII promoter region and start of transcription (Transfac DB, Biobase GmbH, ONLY for academic use) [Help] [Example] Nsite-PL / Recognition of PLANT Regulatory motifs with statistics (RegsitePL DB) [Help] [Example] NsiteM-PL / Recognition of PLANT Regulatory motifs conserved in several sequences (RegsitePL DB) [Help] [Example] PlantPromDB_Blast / BLAST search in sequences of PlantPromDB [Example] Nsite / Recognition of Regulatory motifs (for RE Sets derived from ooTFD, RegsiteAN DB and RegsitePL DB) [Help] [Example] NsiteM / Recognition of Conserved Regulatory motifs (for RE Sets derived from ooTFD, RegsiteAN DB and RegsitePL DB) [Help] [Example] NsiteH / Search for functional motifs conserved in a pair of orthologous sequences (for RE Sets derived from ooTFD, Regsite AN DB and RegsitePL DB) [Help] [Example] POLYAH / Recognition of 3'-end cleavage and polyadenilation region [Help] [Example] BPROM / Prediction of bacterial promoters [Help] [Example] PromH(G) / Promoter prediction using ortologous sequences in eukaryotic genomes [Help] [Example] PromH(W) / Promoter prediction using ortologous sequences in eukaryotic genomes (only for academic usage) [Help] [Example] CpGFinder / GC-islands finding [Help] [Example] ScanWM-P / Search for weight matrix patterns of plant regulatory sequences [Help] [Example] Motif Explorer / Motif and promoter visualization |